Pregenerated sensors for EFCAB9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044056Ensembl transcript IDs: ENSMUST00000054327.3, ENSMUST00000109377.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR GCA 90 bp | GCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGTCTCTGGCTCTTCCCAGTCCCAGATGGTCCTGATGTaGCAGCAGTATGCAAATCAA | + |
Preference number: 4 (lower is better) Translates to: AKPFSPRQGLLVSGSSQSQMVLM*QQYANQ Trigger: TTGATTTGCATACTGCTGGCACATCAGGACCATCTG...GGACTGGGAAGAGCCAGAGACCAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109377.2 |
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CDS-3UTR GCA 90 bp | CTCTCCCAGGCAGGGCCTGTTGGTCTCTGGCTCTTCCCAGTCCCAGCCTGTTTGAGGTCTCGGAGTTCCTaGTTTTTAATATTGAAGAGA | + |
Preference number: 4 (lower is better) Translates to: LSQAGPVGLWLFPVPACLRSRSS*FLILKR Trigger: TCTCTTCAATATTAAAAAGCAGGAACTCCGAGACCT...CAAACAGGCTGGGACTGGGAAGAGCCAGAGACCAACAGGCCCTGCCTGGGAGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109377.2 |
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CDS-3UTR GCA 90 bp | AACTTAGCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGTCTCTGGCTCTTCCGATGTGCCAGCAGTATaGAAATCAACACATAGAACT | + |
Preference number: 4 (lower is better) Translates to: NLAKPFSPRQGLLVSGSSDVPAV*KSTHRT Trigger: AGTTCTATGTGTTGATTTGCATACTGCTGGCACATC...GGAAGAGCCAGAGACCAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGCTAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109377.2 |
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CDS-3UTR TCA 90 bp | TACATAATACAGAACTTAGCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGTCTTACTCGGTCACCTGTaGTGTCAAAGTCATGGAAAA | + |
Preference number: 4 (lower is better) Translates to: YIIQNLAKPFSPRQGLLVLLGHL*CQSHGK Trigger: TTTTCCATGACTTTGACATCACAGGTGACCGAGTAA...GACCAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGCTAAGTTCTGTATTATGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109377.2 |
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CDS TCA 90 bp | TCCTACAGCTGTCCAGTCCAGGAGGTCAAATATCATCCCGATCTGTaGCTTGTTCAGGTTAGTCACGTGCTGGAGGAAATGAAAGAAGAG | + |
Preference number: 5 (lower is better) Translates to: SYSCPVQEVKYHPDL*LVQVSHVLEEMKEE Trigger: CTCTTCTTTCATTTCCTCCAGCACGTGACTAACCTGAACAAGTCACAGATCGGGATGATATTTGACCTCCTGGACTGGACAGCTGTAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054327.3 |
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CDS-3UTR CAA 90 bp | CACTACATAATACAGAACTTAGCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGAGAAATCTGTAGTTTaGGAAATTGGCCGCACCTAT | + |
Preference number: 5 (lower is better) Translates to: HYIIQNLAKPFSPRQGLLEKSVV*EIGRTY Trigger: ATAGGTGCGGCCAATTTCCAAAACTACAGATTTCTC...CAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGCTAAGTTCTGTATTATGTAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109377.2 |
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CDS TCA 90 bp | AAGAGCACATCATTCAAGGTGTTCCTGTGGTGCACATCCAGAAGATaGAAGTACACCATCAAGGCTTTCACGTTTCTCAAAGACAGTAAG | + |
Preference number: 5 (lower is better) Translates to: KSTSFKVFLWCTSRR*KYTIKAFTFLKDSK Trigger: CTTACTGTCTTTGAGAAACGTGAAAGCCTTGATGGTGTACTTTCATCTTCTGGATGTGCACCACAGGAACACCTTGAATGATGTGCTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054327.3 |
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CDS CCA 90 bp | TCCCAAATTTCTCCACTTACTCGGTCACCTGTGATGTCAAAGTCATaGAAAAGGTCTCGGAGTTCCTGCTTTTTAATATTGAAGAGAAAT | + |
Preference number: 5 (lower is better) Translates to: SQISPLTRSPVMSKS*KRSRSSCFLILKRN Trigger: ATTTCTCTTCAATATTAAAAAGCAGGAACTCCGAGACCTTTTCCATGACTTTGACATCACAGGTGACCGAGTAAGTGGAGAAATTTGGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109377.2 |
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CDS GCA 72 bp | GCGGTACATAAAGTGGTCTTCCAGATGGTCCTGATGTaGCAGCAGTATGCAAATCAACACATAGAACTGGTC | + |
Preference number: 6 (lower is better) Translates to: AVHKVVFQMVLM*QQYANQHIELV Trigger: GACCAGTTCTATGTGTTGATTTGCATACTGCTGGCACATCAGGACCATCTGGAAGACCACTTTATGTACCGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054327.3 ENSMUST00000109377.2 |
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CDS TCA 72 bp | TGTGACTTGTTCAGGTTAGTCACGTGCTGGAGGAAATaGAAGAAGAGCACATCATTCAAGGTGTTCCTGTGG | + |
Preference number: 6 (lower is better) Translates to: CDLFRLVTCWRK*KKSTSFKVFLW Trigger: CCACAGGAACACCTTGAATGATGTGCTCTTCTTTCATTTCCTCCAGCACGTGACTAACCTGAACAAGTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054327.3 |
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CDS TCA 72 bp | TCATTCAAGGTGTTCCTGTGGTGCACATCCAGAAGATaGAAGTACACCATCAAGGCTTTCACGTTTCTCAAA | + |
Preference number: 6 (lower is better) Translates to: SFKVFLWCTSRR*KYTIKAFTFLK Trigger: TTTGAGAAACGTGAAAGCCTTGATGGTGTACTTTCATCTTCTGGATGTGCACCACAGGAACACCTTGAATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054327.3 |
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CDS CCA 72 bp | TCTCCACTTACTCGGTCACCTGTGATGTCAAAGTCATaGAAAAGGTCTCGGAGTTCCTGCTTTTTAATATTG | + |
Preference number: 6 (lower is better) Translates to: SPLTRSPVMSKS*KRSRSSCFLIL Trigger: CAATATTAAAAAGCAGGAACTCCGAGACCTTTTCCATGACTTTGACATCACAGGTGACCGAGTAAGTGGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109377.2 |