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Pregenerated sensors for EFCAB9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044056

Ensembl transcript IDs: ENSMUST00000054327.3, ENSMUST00000109377.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp GCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGTCTCTGGCTCTTCCCAGTCCCAGATGGTCCTGATGTaGCAGCAGTATGCAAATCAA +
Preference number: 4 (lower is better)
Translates to: AKPFSPRQGLLVSGSSQSQMVLM*QQYANQ
Trigger: TTGATTTGCATACTGCTGGCACATCAGGACCATCTG...GGACTGGGAAGAGCCAGAGACCAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109377.2
CDS-3UTR GCA 90 bp CTCTCCCAGGCAGGGCCTGTTGGTCTCTGGCTCTTCCCAGTCCCAGCCTGTTTGAGGTCTCGGAGTTCCTaGTTTTTAATATTGAAGAGA +
Preference number: 4 (lower is better)
Translates to: LSQAGPVGLWLFPVPACLRSRSS*FLILKR
Trigger: TCTCTTCAATATTAAAAAGCAGGAACTCCGAGACCT...CAAACAGGCTGGGACTGGGAAGAGCCAGAGACCAACAGGCCCTGCCTGGGAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109377.2
CDS-3UTR GCA 90 bp AACTTAGCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGTCTCTGGCTCTTCCGATGTGCCAGCAGTATaGAAATCAACACATAGAACT +
Preference number: 4 (lower is better)
Translates to: NLAKPFSPRQGLLVSGSSDVPAV*KSTHRT
Trigger: AGTTCTATGTGTTGATTTGCATACTGCTGGCACATC...GGAAGAGCCAGAGACCAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGCTAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109377.2
CDS-3UTR TCA 90 bp TACATAATACAGAACTTAGCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGTCTTACTCGGTCACCTGTaGTGTCAAAGTCATGGAAAA +
Preference number: 4 (lower is better)
Translates to: YIIQNLAKPFSPRQGLLVLLGHL*CQSHGK
Trigger: TTTTCCATGACTTTGACATCACAGGTGACCGAGTAA...GACCAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGCTAAGTTCTGTATTATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109377.2
CDS TCA 90 bp TCCTACAGCTGTCCAGTCCAGGAGGTCAAATATCATCCCGATCTGTaGCTTGTTCAGGTTAGTCACGTGCTGGAGGAAATGAAAGAAGAG +
Preference number: 5 (lower is better)
Translates to: SYSCPVQEVKYHPDL*LVQVSHVLEEMKEE
Trigger: CTCTTCTTTCATTTCCTCCAGCACGTGACTAACCTGAACAAGTCACAGATCGGGATGATATTTGACCTCCTGGACTGGACAGCTGTAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054327.3
CDS-3UTR CAA 90 bp CACTACATAATACAGAACTTAGCCAAGCCTTTCTCTCCCAGGCAGGGCCTGTTGGAGAAATCTGTAGTTTaGGAAATTGGCCGCACCTAT +
Preference number: 5 (lower is better)
Translates to: HYIIQNLAKPFSPRQGLLEKSVV*EIGRTY
Trigger: ATAGGTGCGGCCAATTTCCAAAACTACAGATTTCTC...CAACAGGCCCTGCCTGGGAGAGAAAGGCTTGGCTAAGTTCTGTATTATGTAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109377.2
CDS TCA 90 bp AAGAGCACATCATTCAAGGTGTTCCTGTGGTGCACATCCAGAAGATaGAAGTACACCATCAAGGCTTTCACGTTTCTCAAAGACAGTAAG +
Preference number: 5 (lower is better)
Translates to: KSTSFKVFLWCTSRR*KYTIKAFTFLKDSK
Trigger: CTTACTGTCTTTGAGAAACGTGAAAGCCTTGATGGTGTACTTTCATCTTCTGGATGTGCACCACAGGAACACCTTGAATGATGTGCTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054327.3
CDS CCA 90 bp TCCCAAATTTCTCCACTTACTCGGTCACCTGTGATGTCAAAGTCATaGAAAAGGTCTCGGAGTTCCTGCTTTTTAATATTGAAGAGAAAT +
Preference number: 5 (lower is better)
Translates to: SQISPLTRSPVMSKS*KRSRSSCFLILKRN
Trigger: ATTTCTCTTCAATATTAAAAAGCAGGAACTCCGAGACCTTTTCCATGACTTTGACATCACAGGTGACCGAGTAAGTGGAGAAATTTGGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109377.2
CDS GCA 72 bp GCGGTACATAAAGTGGTCTTCCAGATGGTCCTGATGTaGCAGCAGTATGCAAATCAACACATAGAACTGGTC +
Preference number: 6 (lower is better)
Translates to: AVHKVVFQMVLM*QQYANQHIELV
Trigger: GACCAGTTCTATGTGTTGATTTGCATACTGCTGGCACATCAGGACCATCTGGAAGACCACTTTATGTACCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054327.3
ENSMUST00000109377.2
CDS TCA 72 bp TGTGACTTGTTCAGGTTAGTCACGTGCTGGAGGAAATaGAAGAAGAGCACATCATTCAAGGTGTTCCTGTGG +
Preference number: 6 (lower is better)
Translates to: CDLFRLVTCWRK*KKSTSFKVFLW
Trigger: CCACAGGAACACCTTGAATGATGTGCTCTTCTTTCATTTCCTCCAGCACGTGACTAACCTGAACAAGTCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054327.3
CDS TCA 72 bp TCATTCAAGGTGTTCCTGTGGTGCACATCCAGAAGATaGAAGTACACCATCAAGGCTTTCACGTTTCTCAAA +
Preference number: 6 (lower is better)
Translates to: SFKVFLWCTSRR*KYTIKAFTFLK
Trigger: TTTGAGAAACGTGAAAGCCTTGATGGTGTACTTTCATCTTCTGGATGTGCACCACAGGAACACCTTGAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054327.3
CDS CCA 72 bp TCTCCACTTACTCGGTCACCTGTGATGTCAAAGTCATaGAAAAGGTCTCGGAGTTCCTGCTTTTTAATATTG +
Preference number: 6 (lower is better)
Translates to: SPLTRSPVMSKS*KRSRSSCFLIL
Trigger: CAATATTAAAAAGCAGGAACTCCGAGACCTTTTCCATGACTTTGACATCACAGGTGACCGAGTAAGTGGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109377.2