Pregenerated sensors for EFCAB7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073791Ensembl transcript IDs: ENSMUST00000136874.4, ENSMUST00000239516.1, ENSMUST00000239518.1, ENSMUST00000239519.1, ENSMUST00000239520.1, ENSMUST00000239521.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACGGACCCCTTTCAGGGGACCCTTCCATGTGGCTTCCAAACTGTTaGCGCCTCAGTTTACTGTCGGCCTCCAGTCTTTCTAGTGTAGTC | + |
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Preference number: 1 (lower is better) Translates to: DGPLSGDPSMWLPNC*RLSLLSASSLSSVV Trigger: GACTACACTAGAAAGACTGGAGGCCGACAGTAAACTGAGGCGTCAACAGTTTGGAAGCCACATGGAAGGGTCCCCTGAAAGGGGTCCGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR CCA 90 bp | CAAATGGGCATGCCTCTGTCAGCTCCAGAGCCTTATTATAGCCCATaGAATGCAGAGTCACCCACAGGTCAAGAGGGTCTCCTTCTCGGT | + |
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Preference number: 1 (lower is better) Translates to: QMGMPLSAPEPYYSP*NAESPTGQEGLLLG Trigger: ACCGAGAAGGAGACCCTCTTGACCTGTGGGTGACTCTGCATTCCATGGGCTATAATAAGGCTCTGGAGCTGACAGAGGCATGCCCATTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR GCA 90 bp | TCTTGGCTTGCATCTTTCAGCGTAGATGTTGATGACAAATGGGCATaGCTCTGTCAGCTCCAGAGCCTTATTATAGCCCATGGAATGCAG | + |
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Preference number: 1 (lower is better) Translates to: SWLASFSVDVDDKWA*LCQLQSLIIAHGMQ Trigger: CTGCATTCCATGGGCTATAATAAGGCTCTGGAGCTGACAGAGGCATGCCCATTTGTCATCAACATCTACGCTGAAAGATGCAAGCCAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR CCA 90 bp | TTTGATTCTTGGCTTGCATCTTTCAGCGTAGATGTTGATGACAAATaGGCATGCCTCTGTCAGCTCCAGAGCCTTATTATAGCCCATGGA | + |
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Preference number: 1 (lower is better) Translates to: FDSWLASFSVDVDDK*ACLCQLQSLIIAHG Trigger: TCCATGGGCTATAATAAGGCTCTGGAGCTGACAGAGGCATGCCCATTTGTCATCAACATCTACGCTGAAAGATGCAAGCCAAGAATCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR CCA 90 bp | GCACACTGCCAATCCTTTAAGTTTGGCTCAGTTAATGTTGAGTCTTaGTTACTGTTAGCGCTCATGGTCATTGTGAAGGAGACAGATGTT | + |
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Preference number: 1 (lower is better) Translates to: AHCQSFKFGSVNVES*LLLALMVIVKETDV Trigger: AACATCTGTCTCCTTCACAATGACCATGAGCGCTAACAGTAACCAAGACTCAACATTAACTGAGCCAAACTTAAAGGATTGGCAGTGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR-3UTR GCA 90 bp | AGAGGGTCTCCTTCTCGGTCATTTGCTTCCATCAGATGCAAGTCCATAAAGCCCGGCTTGTGTCACCTTTaGTTGAGAATGTTTCTTGGT | + |
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Preference number: 2 (lower is better) Translates to: RGSPSRSFASIRCKSIKPGLCHL*LRMFLG Trigger: ACCAAGAAACATTCTCAAGCAAAGGTGACACAAGCC...GGGCTTTATGGACTTGCATCTGATGGAAGCAAATGACCGAGAAGGAGACCCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGAGCCTTATTATAGCCCATGGAATGCAGAGTCACCCACAGGTCAAGAGGTTAATGTTGAGTCTTaGTTACTGTTAGCGCTCATG | + |
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Preference number: 2 (lower is better) Translates to: APEPYYSPWNAESPTGQEVNVES*LLLALM Trigger: CATGAGCGCTAACAGTAACCAAGACTCAACATTAAC...CTCTTGACCTGTGGGTGACTCTGCATTCCATGGGCTATAATAAGGCTCTGGAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CCA 90 bp | GGCCTTTTCAAGTTGCCCACTGCATGCCTCCATATGGACAACTTTGATTCTTGGTCTCTATGTACAAGCTaGGCTTCTTCTGTTACTGGT | + |
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Preference number: 2 (lower is better) Translates to: GLFKLPTACLHMDNFDSWSLCTS*ASSVTG Trigger: ACCAGTAACAGAAGAAGCCCAGCTTGTACATAGAGA...CCAAGAATCAAAGTTGTCCATATGGAGGCATGCAGTGGGCAACTTGAAAAGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR CAA 90 bp | TGGTTACTGTTAGCGCTCATGGTCATTGTGAAGGAGACAGATGTTTaGAACTTTCTAGTTGTTGACAGTAAGGCATGGCTTGTGTCACCT | + |
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Preference number: 2 (lower is better) Translates to: WLLLALMVIVKETDV*NFLVVDSKAWLVSP Trigger: AGGTGACACAAGCCATGCCTTACTGTCAACAACTAGAAAGTTCAAAACATCTGTCTCCTTCACAATGACCATGAGCGCTAACAGTAACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR-3UTR GCA 90 bp | GTCTTGGTTACTGTTAGCGCTCATGGTCATTGTGAAGGAGACAGATGTTTTGAAGTAGTCTTGAGACACTaGTCACTGGTTGTCATGTAT | + |
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Preference number: 2 (lower is better) Translates to: VLVTVSAHGHCEGDRCFEVVLRH*SLVVMY Trigger: ATACATGACAACCAGTGAGCAGTGTCTCAAGACTAC...TTCAAAACATCTGTCTCCTTCACAATGACCATGAGCGCTAACAGTAACCAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR-3UTR CCA 90 bp | TTCTTCTTGTTCATTCAGGGGCATTACATGTTGACACACCATTGTAGATCTTGGCTGCATGCCTCCATATaGACAACTTTGATTCTTGGC | + |
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Preference number: 2 (lower is better) Translates to: FFLFIQGHYMLTHHCRSWLHASI*TTLILG Trigger: GCCAAGAATCAAAGTTGTCCATATGGAGGCATGCAG...CCAAGATCTACAATGGTGTGTCAACATGTAATGCCCCTGAATGAACAAGAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CCA 90 bp | ATGAGCTGTGGCTCTGCTGGATTCTCATTTTTCTTAAGAATATATAAGGCTGTGGTTGACAGTAAGGCATaGCTTGTGTCACCTTTGCTT | + |
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Preference number: 2 (lower is better) Translates to: MSCGSAGFSFFLRIYKAVVDSKA*LVSPLL Trigger: AAGCAAAGGTGACACAAGCCATGCCTTACTGTCAAC...CACAGCCTTATATATTCTTAAGAAAAATGAGAATCCAGCAGAGCCACAGCTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR TCA 90 bp | AACTCACTTGTAAGAGATAATTCCCCTGTTTCATCTCTATGTACAAGCTGGGCTTTTTGTACTGATGACTaGCAACTTCACCGTCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: NSLVRDNSPVSSLCTSWAFCTDD*QLHRLL Trigger: AAGAAGACGGTGAAGTTGTCAGTCATCAGTACAAAA...AGCCCAGCTTGTACATAGAGATGAAACAGGGGAATTATCTCTTACAAGTGAGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR GCA 90 bp | ATACACACAACAATATATCCATTCTTCTTGTTCATTCAGGGGCATTACATGTTGTTTGCTTCCATCAGATaGAAGTCCATAAAGCCCTGT | + |
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Preference number: 2 (lower is better) Translates to: IHTTIYPFFLFIQGHYMLFASIR*KSIKPC Trigger: ACAGGGCTTTATGGACTTGCATCTGATGGAAGCAAA...CAACATGTAATGCCCCTGAATGAACAAGAAGAATGGATATATTGTTGTGTGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR TCA 72 bp | CTTTCAGGGGACCCTTCCATGTGGCTTCCAAACTGTTaGCGCCTCAGTTTACTGTCGGCCTCCAGTCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: LSGDPSMWLPNC*RLSLLSASSLS Trigger: AGAAAGACTGGAGGCCGACAGTAAACTGAGGCGTCAACAGTTTGGAAGCCACATGGAAGGGTCCCCTGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR-3UTR CAA 90 bp | CTGGTGACGGACCCCTTTCAGGGGACCCTTCCATGTGGCTTCCAAACTGTTGACCTTTCTAGTGTAGTCTaGAGACACTGCTCACTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LVTDPFQGTLPCGFQTVDLSSVV*RHCSLV Trigger: AACCAGTGAGCAGTGTCTCAAGACTACACTAGAAAG...GTCAACAGTTTGGAAGCCACATGGAAGGGTCCCCTGAAAGGGGTCCGTCACCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR GCA 72 bp | CACCCACAGGTCAAGAGGGTCTCCTTCTCGGTCATTTaGTTCCATCAGATGCAAGTCCATAAAGCCCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: HPQVKRVSFSVI*FHQMQVHKALS Trigger: AGACAGGGCTTTATGGACTTGCATCTGATGGAAGCAAATGACCGAGAAGGAGACCCTCTTGACCTGTGGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR GCA 72 bp | GCATCTTTCAGCGTAGATGTTGATGACAAATGGGCATaGCTCTGTCAGCTCCAGAGCCTTATTATAGCCCAT | + |
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Preference number: 3 (lower is better) Translates to: ASFSVDVDDKWA*LCQLQSLIIAH Trigger: ATGGGCTATAATAAGGCTCTGGAGCTGACAGAGGCATGCCCATTTGTCATCAACATCTACGCTGAAAGATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR CCA 72 bp | ATGGCCTTTTCAAGTTGCCCACTGCATGCCTCCATATaGACAACTTTGATTCTTGGCTTGCATCTTTCAGCG | + |
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Preference number: 3 (lower is better) Translates to: MAFSSCPLHASI*TTLILGLHLSA Trigger: CGCTGAAAGATGCAAGCCAAGAATCAAAGTTGTCCATATGGAGGCATGCAGTGGGCAACTTGAAAAGGCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR CCA 72 bp | CAGGGGCATTACATGTTGACACACCATTGTAGATCTTaGTGCCACTTCTACTGCAAAGATGTTGAGTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: QGHYMLTHHCRS*CHFYCKDVESS Trigger: AGAGGACTCAACATCTTTGCAGTAGAAGTGGCACCAAGATCTACAATGGTGTGTCAACATGTAATGCCCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CAA 90 bp | CCTTATTATAGCCCATGGAATGCAGAGTCACCCACAGGTCAAGAGGGTCTCCTTAAGGAGACAGATGTTTaGAACTTTCTAGTTGTTGAC | + |
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Preference number: 3 (lower is better) Translates to: PYYSPWNAESPTGQEGLLKETDV*NFLVVD Trigger: GTCAACAACTAGAAAGTTCAAAACATCTGTCTCCTT...AAGGAGACCCTCTTGACCTGTGGGTGACTCTGCATTCCATGGGCTATAATAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR GCA 72 bp | AGATTTGCAAATGGCCTTTTCAAGTTGCCCACTGCATaGCTCCATATGGACAACTTTGATTCTTGGCTTGCA | + |
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Preference number: 3 (lower is better) Translates to: RFANGLFKLPTA*LHMDNFDSWLA Trigger: TGCAAGCCAAGAATCAAAGTTGTCCATATGGAGGCATGCAGTGGGCAACTTGAAAAGGCCATTTGCAAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR GCA 72 bp | GGGCATTACATGTTGACACACCATTGTAGATCTTGGTaGCACTTCTACTGCAAAGATGTTGAGTCCTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: GHYMLTHHCRSW*HFYCKDVESSV Trigger: AACAGAGGACTCAACATCTTTGCAGTAGAAGTGGCACCAAGATCTACAATGGTGTGTCAACATGTAATGCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CAA 90 bp | GGCCTTTTCAAGTTGCCCACTGCATGCCTCCATATGGACAACTTTGATTCTTGGAGGCTAATCAGACCATaGCCATCTAAATCAATTACT | + |
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Preference number: 3 (lower is better) Translates to: GLFKLPTACLHMDNFDSWRLIRP*PSKSIT Trigger: AGTAATTGATTTAGATGGCAATGGTCTGATTAGCCT...CCAAGAATCAAAGTTGTCCATATGGAGGCATGCAGTGGGCAACTTGAAAAGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CAA 90 bp | TTCTTCTTGTTCATTCAGGGGCATTACATGTTGACACACCATTGTAGATCTTGGCTCCTTCTCGGTCATTaGCTTCCATCAGATGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: FFLFIQGHYMLTHHCRSWLLLGH*LPSDAS Trigger: ACTTGCATCTGATGGAAGCAAATGACCGAGAAGGAG...CCAAGATCTACAATGGTGTGTCAACATGTAATGCCCCTGAATGAACAAGAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CAA 90 bp | CCAAACACTTCTCTGTTTCGTAGTTCAGTAAAGCACATGAGCTGTGGCTCTGCTGACACTGCTCACTGGTaGTCATGTATAATTTACAAA | + |
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Preference number: 3 (lower is better) Translates to: PNTSLFRSSVKHMSCGSADTAHW*SCIIYK Trigger: TTTGTAAATTATACATGACAACCAGTGAGCAGTGTC...AGCAGAGCCACAGCTCATGTGCTTTACTGAACTACGAAACAGAGAAGTGTTTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR-3UTR CAA 90 bp | CATTACATGTTGACACACCATTGTAGATCTTGGTGCCACTTCTACTGCAAAGATCTTTCTAGTGTAGTCTaGAGACACTGCTCACTGGTT | + |
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Preference number: 3 (lower is better) Translates to: HYMLTHHCRSWCHFYCKDLSSVV*RHCSLV Trigger: AACCAGTGAGCAGTGTCTCAAGACTACACTAGAAAG...ATCTTTGCAGTAGAAGTGGCACCAAGATCTACAATGGTGTGTCAACATGTAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR TCA 72 bp | CAGATCTCTGAGCTATGTGCATTTTGTACTGATGACTaGCAACTTCACCGTCTTCTTCTAAAAAGAAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: QISELCAFCTDD*QLHRLLLKRSS Trigger: GCTGCTTCTTTTTAGAAGAAGACGGTGAAGTTGTCAGTCATCAGTACAAAATGCACATAGCTCAGAGATCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR GCA 72 bp | TCGGCCTCCAGTCTTTCTAGTGTAGTCTTGAGACACTaGTCACTGGTTGTCATGTATAATTTACAAAACTTA | + |
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Preference number: 3 (lower is better) Translates to: SASSLSSVVLRH*SLVVMYNLQNL Trigger: TAAGTTTTGTAAATTATACATGACAACCAGTGAGCAGTGTCTCAAGACTACACTAGAAAGACTGGAGGCCGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR CCA 72 bp | GATGTTTTGAACTTTCTAGTTGTTGACAGTAAGGCATaGCTTGTGTCACCTTTGCTTGAGAATGTTTCTTGG | + |
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Preference number: 3 (lower is better) Translates to: DVLNFLVVDSKA*LVSPLLENVSW Trigger: CCAAGAAACATTCTCAAGCAAAGGTGACACAAGCCATGCCTTACTGTCAACAACTAGAAAGTTCAAAACATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR-3UTR CAA 90 bp | GAGACAGATGTTTTGAACTTTCTAGTTGTTGACAGTAAGGCATGGCTTGTGTCAGACACTGCTCACTGGTaGTCATGTATAATTTACAAA | + |
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Preference number: 3 (lower is better) Translates to: ETDVLNFLVVDSKAWLVSDTAHW*SCIIYK Trigger: TTTGTAAATTATACATGACAACCAGTGAGCAGTGTC...TGACACAAGCCATGCCTTACTGTCAACAACTAGAAAGTTCAAAACATCTGTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR-3UTR CAA 90 bp | ATACACACAACAATATATCCATTCTTCTTGTTCATTCAGGGGCATTACATGTTGATGTTGAGTCCTCTGTaGTTGACACAGTTTTTACTC | + |
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Preference number: 3 (lower is better) Translates to: IHTTIYPFFLFIQGHYMLMLSPL*LTQFLL Trigger: GAGTAAAAACTGTGTCAACAACAGAGGACTCAACAT...CAACATGTAATGCCCCTGAATGAACAAGAAGAATGGATATATTGTTGTGTGTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR CAA 72 bp | CCTTTCAGGGGACCCTTCCATGTGGCTTCCAAACTGTaGACGCCTCAGTTTACTGTCGGCCTCCAGTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: PFRGPFHVASKL*TPQFTVGLQSF Trigger: GAAAGACTGGAGGCCGACAGTAAACTGAGGCGTCAACAGTTTGGAAGCCACATGGAAGGGTCCCCTGAAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| CDS-3UTR TCA 90 bp | ATGTTGACACACCATTGTAGATCTTGGTGCCACTTCTACTGCAAAGATGTTGAGGAAAGCAGTGGGTTCTaGGTACCCAAAGCTGCATCA | + |
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Preference number: 4 (lower is better) Translates to: MLTHHCRSWCHFYCKDVEESSGF*VPKAAS Trigger: TGATGCAGCTTTGGGTACTCAGAACCCACTGCTTTC...CTCAACATCTTTGCAGTAGAAGTGGCACCAAGATCTACAATGGTGTGTCAACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| 3UTR CAA 72 bp | TCCATGACTTTAGCATCGCTTCTATCAAGGACAGATTaGCAAATGGCCTTTTCAAGTTGCCCACTGCATGCC | + |
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Preference number: 4 (lower is better) Translates to: SMTLASLLSRTD*QMAFSSCPLHA Trigger: GGCATGCAGTGGGCAACTTGAAAAGGCCATTTGCAAATCTGTCCTTGATAGAAGCGATGCTAAAGTCATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| CDS-3UTR TCA 90 bp | GATGTTTTGAACTTTCTAGTTGTTGACAGTAAGGCATGGCTTGTGTCACCTTTGGAAAGCAGTGGGTTCTaGGTACCCAAAGCTGCATCA | + |
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Preference number: 4 (lower is better) Translates to: DVLNFLVVDSKAWLVSPLESSGF*VPKAAS Trigger: TGATGCAGCTTTGGGTACTCAGAACCCACTGCTTTC...CAAAGGTGACACAAGCCATGCCTTACTGTCAACAACTAGAAAGTTCAAAACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR CAA 72 bp | CAACTTCACCGTCTTCTTCTAAAAAGAAGCAGCCTTTaGACTGTGCACACTGCCAATCCTTTAAGTTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: QLHRLLLKRSSL*TVHTANPLSLA Trigger: AGCCAAACTTAAAGGATTGGCAGTGTGCACAGTCAAAAGGCTGCTTCTTTTTAGAAGAAGACGGTGAAGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR CAA 72 bp | TTAGCGCTCATGGTCATTGTGAAGGAGACAGATGTTTaGAACTTTCTAGTTGTTGACAGTAAGGCATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LALMVIVKETDV*NFLVVDSKAWL Trigger: AAGCCATGCCTTACTGTCAACAACTAGAAAGTTCAAAACATCTGTCTCCTTCACAATGACCATGAGCGCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| 3UTR CAA 72 bp | ATTGTAGATCTTGGTGCCACTTCTACTGCAAAGATGTaGAGTCCTCTGTTGTTGACACAGTTTTTACTCAGT | + |
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Preference number: 4 (lower is better) Translates to: IVDLGATSTAKM*SPLLLTQFLLS Trigger: ACTGAGTAAAAACTGTGTCAACAACAGAGGACTCAACATCTTTGCAGTAGAAGTGGCACCAAGATCTACAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| CDS-3UTR CAA 90 bp | GCTCCAGAGCCTTATTATAGCCCATGGAATGCAGAGTCACCCACAGGTCAAGAGTTAGTGGGAATTTCTTaGTTCGAGGACTCCCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: APEPYYSPWNAESPTGQELVGIS*FEDSQK Trigger: TTTCTGGGAGTCCTCGAACAAAGAAATTCCCACTAA...CTCTTGACCTGTGGGTGACTCTGCATTCCATGGGCTATAATAAGGCTCTGGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239519.1 |
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| CDS-3UTR CAA 90 bp | GTCTTGGTTACTGTTAGCGCTCATGGTCATTGTGAAGGAGACAGATGTTTTGAATTAGTGGGAATTTCTTaGTTCGAGGACTCCCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: VLVTVSAHGHCEGDRCFELVGIS*FEDSQK Trigger: TTTCTGGGAGTCCTCGAACAAAGAAATTCCCACTAA...TTCAAAACATCTGTCTCCTTCACAATGACCATGAGCGCTAACAGTAACCAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239519.1 ENSMUST00000239521.1 |
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| CDS CCA 72 bp | TGGGAATTTCTTTGTTCGAGGACTCCCAGAAAGCAGTaGGTTCTGAGTACCCAAAGCTGCATCACTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: WEFLCSRTPRKQ*VLSTQSCITSR Trigger: CCTGGAAGTGATGCAGCTTTGGGTACTCAGAACCCACTGCTTTCTGGGAGTCCTCGAACAAAGAAATTCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000136874.4 ENSMUST00000239516.1 ENSMUST00000239518.1 ENSMUST00000239519.1 ENSMUST00000239520.1 ENSMUST00000239521.1 |
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