Pregenerated sensors for EFCAB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020690Ensembl transcript IDs: ENSMUST00000021029.6, ENSMUST00000136876.8, ENSMUST00000137086.8
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAATGGCAAAGGCAGCAGTaGTCGAGCGAGGGGGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKWQRQQ*SSEGES Trigger: GCTCTCCCCCTCGCTCGAGCACTGCTGCCTTTGCCA...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR TCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGAGCCTGAGGCAGACTTaGGAGGTTTCACATTCATGG | + |
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Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKSLRQT*EVSHSW Trigger: CCATGAATGTGAAACCTCTCAAGTCTGCCTCAGGCT...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR TCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGACTCCACATTATTTCTaGGTGGCTCTCCTGGAACCT | + |
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Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKTPHYF*VALLEP Trigger: AGGTTCCAGGAGAGCCACTCAGAAATAATGTGGAGT...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR GCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAGTGGCTTTCTTTACATaGTGTTTGATAGCAGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKVAFFT*CLIAAA Trigger: TGCGGCTGCTATCAAACAGCATGTAAAGAAAGCCAC...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR TCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAGCTTATCAATCCGTGTaGATCAATACAGCCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKAYQSV*INTASS Trigger: AGAACTGGCTGTATTGATTCACACGGATTGATAAGC...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAGAGGTTTCACATTCATaGCCTGTGTTTTCCAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKEVSHS*PVFSNL Trigger: GAGATTGGAAAACACAGGCCATGAATGTGAAACCTC...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGATTGCCGAAACCCTCTaGAACTTTTCCGTTTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKIAETL*NFSVSS Trigger: AGAGGAAACGGAAAAGTTCCAGAGGGTTTCGGCAAT...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR TCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAAACACAGGTATTTTTaGGTATGGGCTATCTGTACG | + |
|
Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKKHRYF*VWAICT Trigger: CGTACAGATAGCCCATACTCAAAAATACCTGTGTTT...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 38% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR GCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAATTATATCCTTTCTGTaGAGGGACGAGGTTTCTACA | + |
|
Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKIISFL*RDEVST Trigger: TGTAGAAACCTCGTCCCTGCACAGAAAGGATATAAT...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR GCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGGTCACAGTCCAATGTTaGTTTTTCTTGAACAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKVTVQC*FFLNRW Trigger: CCACCTGTTCAAGAAAAAGCAACATTGGACTGTGAC...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGTTGTGTGTCTTTAAATaGTTTTCCCATCACCGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKLCVFK*FSHHRP Trigger: GGGACGGTGATGGGAAAACCATTTAAAGACACACAA...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR TCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAATCTTTATCTCTCTTGTaGAAGACAGGTGCTTTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKSLSLL*KTGAFK Trigger: CTTAAAAGCACCTGTCTTTCACAAGAGAGATAAAGA...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR TCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGCAGTTCTATCCTTGGTaGAGAAGTTGTAAGCATTAC | + |
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Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKQFYPW*RSCKHY Trigger: GTAATGCTTACAACTTCTTCACCAAGGATAGAACTG...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR TCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGAATGTTGCTTTTTCTTaGACAGGTGGTCAATGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKNVAFS*TGGQWL Trigger: TAGCCATTGACCACCTGTTCAAGAAAAAGCAACATT...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR GCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAATTCATTCCCAGTTTTaGTATGGTGCTTATCAATCC | + |
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Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKIHSQF*YGAYQS Trigger: GGATTGATAAGCACCATAGCAAAACTGGGAATGAAT...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGGCATATTTTCTTTTCTaGAACCACAGCCTTGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKAYFLF*NHSLEE Trigger: TTCCTCAAGGCTGTGGTTCCAGAAAAGAAAATATGC...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CCA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGTTATAACTCTCCGTaGCTTTCTTTACATGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKSYNSP*LSLHAV Trigger: AACAGCATGTAAAGAAAGCCACGGAGAGTTATAACT...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR GCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGAAAAGGACTCATTGTTaGTTTCGATCCCAACCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKKRTHC*FRSQPN Trigger: ATTTGGTTGGGATCGAAAGCAACAATGAGTCCTTTT...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CCA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGTTTTTCTTGAACAGGTaGTCAATGGCTAAGATGTCA | + |
|
Preference number: 4 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKFFLNR*SMAKMS Trigger: TGACATCTTAGCCATTGACCACCTGTTCAAGAAAAA...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS TCA 90 bp | CACCGTCCCATCCACATCAGGAAACAACGGAAACACAGGTATTTTTaGGTATGGGCTATCTGTACGGAGATTACACCGTTTGAGGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: HRPIHIRKQRKHRYF*VWAICTEITPFEGF Trigger: GAAGCCCTCAAACGGTGTAATCTCCGTACAGATAGCCCATACTCAAAAATACCTGTGTTTCCGTTGTTTCCTGATGTGGATGGGACGGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAGAGATCCTAGCAGAGTaGGCAAAGGCAGCAGTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKEILAE*AKAAVL Trigger: GAGCACTGCTGCCTTTGCCAACTCTGCTAGGATCTC...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS TCA 90 bp | TGCTTATCAATCCGTGTGAATCAATACAGCCAGTTCTATCCTTGGTaGAGAAGTTGTAAGCATTACGGAAGGCTTCAAGTTGTGCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: CLSIRVNQYSQFYPW*RSCKHYGRLQVVQD Trigger: GTCCTGCACAACTTGAAGCCTTCCGTAATGCTTACAACTTCTTCACCAAGGATAGAACTGGCTGTATTGATTCACACGGATTGATAAGCA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS TCA 90 bp | GGTGGTCAATGGCTAAGATGTCATCTGAATAGCCTGAGGCAGACTTaGGAGGTTTCACATTCATGGCCTGTGTTTTCCAATCTCTTTTAT | + |
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Preference number: 5 (lower is better) Translates to: GGQWLRCHLNSLRQT*EVSHSWPVFSNLFY Trigger: ATAAAAGAGATTGGAAAACACAGGCCATGAATGTGAAACCTCTCAAGTCTGCCTCAGGCTATTCAGATGACATCTTAGCCATTGACCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS CCA 90 bp | AAGGGCTTTAGCTTCATCGTGGCTTTAATTTCTGAAACTGCCATTTaGCTAGAAGCTCTGTCTTTTCTGAAGCGGAAACTTGTCATTTGC | + |
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Preference number: 5 (lower is better) Translates to: KGFSFIVALISETAI*LEALSFLKRKLVIC Trigger: GCAAATGACAAGTTTCCGCTTCAGAAAAGACAGAGCTTCTAGCCAAATGGCAGTTTCAGAAATTAAAGCCACGATGAAGCTAAAGCCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137086.8 |
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| CDS-3UTR CAA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAGAAGATAACCCAGAGTaGGAGGGGGAACTCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKEDNPE*EGELLF Trigger: GAACAAGAGTTCCCCCTCCAACTCTGGGTTATCTTC...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS GCA 90 bp | TTACGGAAGGCTTCAAGTTGTGCAGGACTCAGCTTTGATTCTTTGTaGTTTAAATGGTCTGAGAAAGATCCTCGCAAATCTTTATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: LRKASSCAGLSFDSL*FKWSEKDPRKSLSL Trigger: GAGAGATAAAGATTTGCGAGGATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACAACTTGAAGCCTTCCGTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS GCA 90 bp | AACACACTTAATTCAACCATTTTGTTCTCATCAGTGTGTAGAAGCTaGATCAGGTCCTCACAATCCTCCTTCTCAAGTTCGAATTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: NTLNSTILFSSVCRS*IRSSQSSFSSSNSA Trigger: TGCAGAATTCGAACTTGAGAAGGAGGATTGTGAGGACCTGATGCAGCTTCTACACACTGATGAGAACAAAATGGTTGAATTAAGTGTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136876.8 |
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| CDS GCA 90 bp | TGTAGATATCGTACGTGTTTAGATTCATTCCCAGTTTTGCTATGGTaGTTATCAATCCGTGTGAATCAATACAGCCAGTTCTATCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: CRYRTCLDSFPVLLW*LSIRVNQYSQFYPW Trigger: CCAAGGATAGAACTGGCTGTATTGATTCACACGGATTGATAAGCACCATAGCAAAACTGGGAATGAATCTAAACACGTACGATATCTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS-3UTR CAA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAATTCTTTACATGCTGTTaGATAGCAGCCGCATCAGTC | + |
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Preference number: 5 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKFFTCC*IAAASV Trigger: GACTGATGCGGCTGCTATCAAACAGCATGTAAAGAA...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS GCA 90 bp | AAGCTGCATCAGGTCCTCACAATCCTCCTTCTCAAGTTCGAATTCTaGATTCTTCAAAATCAGTGGTATATTAGAGACTTGAACTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: KLHQVLTILLLKFEF*ILQNQWYIRDLNFL Trigger: AAGAAAGTTCAAGTCTCTAATATACCACTGATTTTGAAGAATGCAGAATTCGAACTTGAGAAGGAGGATTGTGAGGACCTGATGCAGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136876.8 |
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| CDS CCA 90 bp | CATTGTAGATATCGTACGTGTTTAGATTCATTCCCAGTTTTGCTATaGTGCTTATCAATCCGTGTGAATCAATACAGCCAGTTCTATCCT | + |
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Preference number: 5 (lower is better) Translates to: HCRYRTCLDSFPVLL*CLSIRVNQYSQFYP Trigger: AGGATAGAACTGGCTGTATTGATTCACACGGATTGATAAGCACCATAGCAAAACTGGGAATGAATCTAAACACGTACGATATCTACAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CCA 90 bp | ACAATCCTCCTTCTCAAGTTCGAATTCTGCATTCTTCAAAATCAGTaGTATATTAGAGACTTGAACTTTCTTCCCTTTGATCTGTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: TILLLKFEFCILQNQ*YIRDLNFLPFDLCH Trigger: GTGGCACAGATCAAAGGGAAGAAAGTTCAAGTCTCTAATATACCACTGATTTTGAAGAATGCAGAATTCGAACTTGAGAAGGAGGATTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136876.8 |
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| CDS-3UTR CAA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGTCACAGTCCAATGTaGCTTTTTCTTGAACAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKSHSPM*LFLEQV Trigger: CACCTGTTCAAGAAAAAGCAACATTGGACTGTGACT...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAGATTCATTCCCAGTTTaGCTATGGTGCTTATCAATC | + |
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Preference number: 5 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKDSFPV*LWCLSI Trigger: GATTGATAAGCACCATAGCAAAACTGGGAATGAATC...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGATAAAATCTGAGAAGTaGATCTTACCGTCCCTGTCG | + |
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Preference number: 5 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKIKSEK*ILPSLS Trigger: CGACAGGGACGGTAAGATCAACTTCTCAGATTTTAT...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGCAATGTTGCTTTTTCTaGAACAGGTGGTCAATGGCT | + |
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Preference number: 5 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKQCCFF*NRWSMA Trigger: AGCCATTGACCACCTGTTCAAGAAAAAGCAACATTG...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGCTCAGCTTTGATTCTTaGTGCTTTAAATGGTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKLSFDS*CFKWSE Trigger: CTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAG...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGGTGCAGGACTCAGCTTaGATTCTTTGTGCTTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKVQDSA*ILCALN Trigger: ATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCAC...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | CTGGTCGGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAACAAGATTCCTGGGTaGTTAGCTAAATCTAAGCAT | + |
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Preference number: 5 (lower is better) Translates to: LVGIHKMSKFPPRHVIDKNKIPG*LAKSKH Trigger: ATGCTTAGATTTAGCTAACAACCCAGGAATCTTGTT...TTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCCGACCAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS-3UTR CAA 90 bp | GGAATCCATAAGATGTCAAAATTTCCACCTAGGCATGTAATAGATAAAAGCAAGGAAACACAGGTATTTTaGAGTATGGGCTATCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: GIHKMSKFPPRHVIDKSKETQVF*SMGYLY Trigger: GTACAGATAGCCCATACTCAAAAATACCTGTGTTTC...CTTGCTTTTATCTATTACATGCCTAGGTGGAAATTTTGACATCTTATGGATTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS TCA 72 bp | GTTTCCTCTTCCTCCCCGTCTCCGGGTCAGACTCACTaGAGTCCGATGGGGAAGATAACCCAGAGTTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: VSSSSPSPGQTH*SPMGKITQSWR Trigger: CCTCCAACTCTGGGTTATCTTCCCCATCGGACTTCAGTGAGTCTGACCCGGAGACGGGGAGGAAGAGGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS CAA 72 bp | GACTCACTGAAGTCCGATGGGGAAGATAACCCAGAGTaGGAGGGGGAACTCTTGTTCATGCTGGCGTCGTGC | + |
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Preference number: 6 (lower is better) Translates to: DSLKSDGEDNPE*EGELLFMLASC Trigger: GCACGACGCCAGCATGAACAAGAGTTCCCCCTCCAACTCTGGGTTATCTTCCCCATCGGACTTCAGTGAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS CAA 90 bp | AACTTATACAAATCCCTTTCTTTCATTATGGAGATCCTAGCAGAGTaGGCAAAGGCAGCAGTGCTCGAGCGAGGGGGAGAGCAGATCTCT | + |
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Preference number: 6 (lower is better) Translates to: NLYKSLSFIMEILAE*AKAAVLERGGEQIS Trigger: AGAGATCTGCTCTCCCCCTCGCTCGAGCACTGCTGCCTTTGCCAACTCTGCTAGGATCTCCATAATGAAAGAAAGGGATTTGTATAAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS CAA 72 bp | TTGTCGGAGAGCATCAAGCCCATTTTCCTCAGCACGTaGTTCAGATTACCAACATCAATCTTCTCCCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: LSESIKPIFLST*FRLPTSIFSPV Trigger: CACTGGGGAGAAGATTGATGTTGGTAATCTGAACAACGTGCTGAGGAAAATGGGCTTGATGCTCTCCGACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000136876.8 ENSMUST00000137086.8 |
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| CDS CAA 72 bp | GCAGCCGCATCAGTCACAGTCCAATGTTGCTTTTTCTaGAACAGGTGGTCAATGGCTAAGATGTCATCTGAA | + |
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Preference number: 6 (lower is better) Translates to: AAASVTVQCCFF*NRWSMAKMSSE Trigger: TTCAGATGACATCTTAGCCATTGACCACCTGTTCAAGAAAAAGCAACATTGGACTGTGACTGATGCGGCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS CAA 90 bp | TGGCTAGAAGCTCTGTCTTTTCTGAAGCGGAAACTTGTCATTTGCTaGTACAGCATTGCCATTTCTTTGGGTTTAAGCTTCTTCAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: WLEALSFLKRKLVIC*YSIAISLGLSFFRP Trigger: GGGCCTGAAGAAGCTTAAACCCAAAGAAATGGCAATGCTGTACAAGCAAATGACAAGTTTCCGCTTCAGAAAAGACAGAGCTTCTAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137086.8 |
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| CDS TCA 72 bp | TGGCTAAGATGTCATCTGAATAGCCTGAGGCAGACTTaGGAGGTTTCACATTCATGGCCTGTGTTTTCCAAT | + |
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Preference number: 6 (lower is better) Translates to: WLRCHLNSLRQT*EVSHSWPVFSN Trigger: ATTGGAAAACACAGGCCATGAATGTGAAACCTCTCAAGTCTGCCTCAGGCTATTCAGATGACATCTTAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS TCA 72 bp | CAGCCGCATCAGTCACAGTCCAATGTTGCTTTTTCTTaGACAGGTGGTCAATGGCTAAGATGTCATCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: QPHQSQSNVAFS*TGGQWLRCHLN Trigger: ATTCAGATGACATCTTAGCCATTGACCACCTGTTCAAGAAAAAGCAACATTGGACTGTGACTGATGCGGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS GCA 72 bp | TGTTTGATAGCAGCCGCATCAGTCACAGTCCAATGTTaGTTTTTCTTGAACAGGTGGTCAATGGCTAAGATG | + |
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Preference number: 6 (lower is better) Translates to: CLIAAASVTVQC*FFLNRWSMAKM Trigger: CATCTTAGCCATTGACCACCTGTTCAAGAAAAAGCAACATTGGACTGTGACTGATGCGGCTGCTATCAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS GCA 72 bp | AATTCAACCATTTTGTTCTCATCAGTGTGTAGAAGCTaGATCAGGTCCTCACAATCCTCCTTCTCAAGTTCG | + |
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Preference number: 6 (lower is better) Translates to: NSTILFSSVCRS*IRSSQSSFSSS Trigger: CGAACTTGAGAAGGAGGATTGTGAGGACCTGATGCAGCTTCTACACACTGATGAGAACAAAATGGTTGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136876.8 |
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| CDS CAA 72 bp | CATCCACATCAGGAAACAACGGAAACACAGGTATTTTaGAGTATGGGCTATCTGTACGGAGATTACACCGTT | + |
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Preference number: 6 (lower is better) Translates to: HPHQETTETQVF*SMGYLYGDYTV Trigger: AACGGTGTAATCTCCGTACAGATAGCCCATACTCAAAAATACCTGTGTTTCCGTTGTTTCCTGATGTGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS TCA 72 bp | CATTCCCAGTTTTGCTATGGTGCTTATCAATCCGTGTaGATCAATACAGCCAGTTCTATCCTTGGTGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: HSQFCYGAYQSV*INTASSILGEE Trigger: TTCTTCACCAAGGATAGAACTGGCTGTATTGATTCACACGGATTGATAAGCACCATAGCAAAACTGGGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS TCA 72 bp | ATCCACATCAGGAAACAACGGAAACACAGGTATTTTTaGGTATGGGCTATCTGTACGGAGATTACACCGTTT | + |
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Preference number: 6 (lower is better) Translates to: IHIRKQRKHRYF*VWAICTEITPF Trigger: AAACGGTGTAATCTCCGTACAGATAGCCCATACTCAAAAATACCTGTGTTTCCGTTGTTTCCTGATGTGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021029.6 |
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| CDS GCA 72 bp | GCTTCAAGTTGTGCAGGACTCAGCTTTGATTCTTTGTaGTTTAAATGGTCTGAGAAAGATCCTCGCAAATCT | + |
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Preference number: 6 (lower is better) Translates to: ASSCAGLSFDSL*FKWSEKDPRKS Trigger: AGATTTGCGAGGATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACAACTTGAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS GCA 72 bp | CGTACGTGTTTAGATTCATTCCCAGTTTTGCTATGGTaGTTATCAATCCGTGTGAATCAATACAGCCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: RTCLDSFPVLLW*LSIRVNQYSQF Trigger: GAACTGGCTGTATTGATTCACACGGATTGATAAGCACCATAGCAAAACTGGGAATGAATCTAAACACGTACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CCA 72 bp | AGCTTCATCGTGGCTTTAATTTCTGAAACTGCCATTTaGCTAGAAGCTCTGTCTTTTCTGAAGCGGAAACTT | + |
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Preference number: 6 (lower is better) Translates to: SFIVALISETAI*LEALSFLKRKL Trigger: AAGTTTCCGCTTCAGAAAAGACAGAGCTTCTAGCCAAATGGCAGTTTCAGAAATTAAAGCCACGATGAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137086.8 |
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| CDS CAA 72 bp | AAGGCTTCAAGTTGTGCAGGACTCAGCTTTGATTCTTaGTGCTTTAAATGGTCTGAGAAAGATCCTCGCAAA | + |
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Preference number: 6 (lower is better) Translates to: KASSCAGLSFDS*CFKWSEKDPRK Trigger: TTTGCGAGGATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACAACTTGAAGCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CAA 72 bp | CATTACGGAAGGCTTCAAGTTGTGCAGGACTCAGCTTaGATTCTTTGTGCTTTAAATGGTCTGAGAAAGATC | + |
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Preference number: 6 (lower is better) Translates to: HYGRLQVVQDSA*ILCALNGLRKI Trigger: GATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACAACTTGAAGCCTTCCGTAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CAA 72 bp | CTGACGATATCCAATAGTTCATTCAGATCCACTGTTTaGTTTCCCTCAGGTGGAAGTTGGGCTATTAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: LTISNSSFRSTV*FPSGGSWAISS Trigger: AGAACTAATAGCCCAACTTCCACCTGAGGGAAACAAAACAGTGGATCTGAATGAACTATTGGATATCGTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000136876.8 ENSMUST00000137086.8 |
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| CDS CAA 72 bp | GCTCTGTCTTTTCTGAAGCGGAAACTTGTCATTTGCTaGTACAGCATTGCCATTTCTTTGGGTTTAAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: ALSFLKRKLVIC*YSIAISLGLSF Trigger: GAAGCTTAAACCCAAAGAAATGGCAATGCTGTACAAGCAAATGACAAGTTTCCGCTTCAGAAAAGACAGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137086.8 |
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| CDS CAA 90 bp | GCATTACGGAAGGCTTCAAGTTGTGCAGGACTCAGCTTTGATTCTTaGTGCTTTAAATGGTCTGAGAAAGATCCTCGCAAATCTTTATCT | + |
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Preference number: 6 (lower is better) Translates to: ALRKASSCAGLSFDS*CFKWSEKDPRKSLS Trigger: AGATAAAGATTTGCGAGGATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACAACTTGAAGCCTTCCGTAATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CAA 90 bp | AGTTGTAAGCATTACGGAAGGCTTCAAGTTGTGCAGGACTCAGCTTaGATTCTTTGTGCTTTAAATGGTCTGAGAAAGATCCTCGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: SCKHYGRLQVVQDSA*ILCALNGLRKILAN Trigger: ATTTGCGAGGATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACAACTTGAAGCCTTCCGTAATGCTTACAACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CAA 90 bp | CTGAAGCGGAAACTTGTCATTTGCTTGTACAGCATTGCCATTTCTTaGGGTTTAAGCTTCTTCAGGCCCTCTATTATTGACTGTACGATA | + |
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Preference number: 6 (lower is better) Translates to: LKRKLVICLYSIAIS*GLSFFRPSIIDCTI Trigger: TATCGTACAGTCAATAATAGAGGGCCTGAAGAAGCTTAAACCCAAAGAAATGGCAATGCTGTACAAGCAAATGACAAGTTTCCGCTTCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137086.8 |
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| CDS TCA 72 bp | TCTGAGAAAGATCCTCGCAAATCTTTATCTCTCTTGTaGAAGACAGGTGCTTTTAAGGGCTTTAGCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: SEKDPRKSLSLL*KTGAFKGFSFI Trigger: GATGAAGCTAAAGCCCTTAAAAGCACCTGTCTTTCACAAGAGAGATAAAGATTTGCGAGGATCTTTCTCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS GCA 72 bp | CAGGTCCTCACAATCCTCCTTCTCAAGTTCGAATTCTaGATTCTTCAAAATCAGTGGTATATTAGAGACTTG | + |
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Preference number: 6 (lower is better) Translates to: QVLTILLLKFEF*ILQNQWYIRDL Trigger: CAAGTCTCTAATATACCACTGATTTTGAAGAATGCAGAATTCGAACTTGAGAAGGAGGATTGTGAGGACCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136876.8 |
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| CDS CCA 72 bp | TGTGCAGGACTCAGCTTTGATTCTTTGTGCTTTAAATaGTCTGAGAAAGATCCTCGCAAATCTTTATCTCTC | + |
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Preference number: 6 (lower is better) Translates to: CAGLSFDSLCFK*SEKDPRKSLSL Trigger: GAGAGATAAAGATTTGCGAGGATCTTTCTCAGACCATTTAAAGCACAAAGAATCAAAGCTGAGTCCTGCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CCA 72 bp | TATCGTACGTGTTTAGATTCATTCCCAGTTTTGCTATaGTGCTTATCAATCCGTGTGAATCAATACAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: YRTCLDSFPVLL*CLSIRVNQYSQ Trigger: CTGGCTGTATTGATTCACACGGATTGATAAGCACCATAGCAAAACTGGGAATGAATCTAAACACGTACGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS TCA 72 bp | TCTGCATTCTTCAAAATCAGTGGTATATTAGAGACTTaGACTTTCTTCCCTTTGATCTGTGCCACACTGTTC | + |
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Preference number: 6 (lower is better) Translates to: SAFFKISGILET*TFFPLICATLF Trigger: GAACAGTGTGGCACAGATCAAAGGGAAGAAAGTTCAAGTCTCTAATATACCACTGATTTTGAAGAATGCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136876.8 |
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| CDS CAA 72 bp | TGTAGATATCGTACGTGTTTAGATTCATTCCCAGTTTaGCTATGGTGCTTATCAATCCGTGTGAATCAATAC | + |
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Preference number: 6 (lower is better) Translates to: CRYRTCLDSFPV*LWCLSIRVNQY Trigger: GTATTGATTCACACGGATTGATAAGCACCATAGCAAAACTGGGAATGAATCTAAACACGTACGATATCTACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CAA 90 bp | TTAATTCATTGTAGATATCGTACGTGTTTAGATTCATTCCCAGTTTaGCTATGGTGCTTATCAATCCGTGTGAATCAATACAGCCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: LIHCRYRTCLDSFPV*LWCLSIRVNQYSQF Trigger: GAACTGGCTGTATTGATTCACACGGATTGATAAGCACCATAGCAAAACTGGGAATGAATCTAAACACGTACGATATCTACAATGAATTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021029.6 ENSMUST00000137086.8 |
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| CDS CCA 72 bp | CTTCTCAAGTTCGAATTCTGCATTCTTCAAAATCAGTaGTATATTAGAGACTTGAACTTTCTTCCCTTTGAT | + |
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Preference number: 6 (lower is better) Translates to: LLKFEFCILQNQ*YIRDLNFLPFD Trigger: ATCAAAGGGAAGAAAGTTCAAGTCTCTAATATACCACTGATTTTGAAGAATGCAGAATTCGAACTTGAGAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136876.8 |
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