RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFCAB11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021176

Ensembl transcript IDs: ENSMUST00000046485.5, ENSMUST00000220875.2, ENSMUST00000221929.2, ENSMUST00000223114.2

Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTAAACAACCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATaGACCTTAGAGCTTGTAGGCCATCATCCAGGGACGTCTGGGCAG +
Preference number: 1 (lower is better)
Translates to: CKQPRPRAAWEGKGS*TLELVGHHPGTSGQ
Trigger: CTGCCCAGACGTCCCTGGATGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
3UTR TCA 90 bp ATGGTTCATGGCGTATTCAAAGTCTCGGAAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCTGAACACCTCCAGCACTGTCCTCGC +
Preference number: 1 (lower is better)
Translates to: MVHGVFKVSEADVTI*VLICLPEHLQHCPR
Trigger: GCGAGGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTGAATACGCCATGAACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR TCA 90 bp AATCCATCGAGCTGTCCAAGTAGTTCACAAGCACCCGGCTCATTTTaGCTGCCCATGGTTCATGGCGTATTCAAAGTCTCGGAAGCTGAC +
Preference number: 1 (lower is better)
Translates to: NPSSCPSSSQAPGSF*LPMVHGVFKVSEAD
Trigger: GTCAGCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTACTTGGACAGCTCGATGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR TCA 90 bp ATTTCAGAGTTATCTTTAGTAGATGCTGAGCTGTATGTTGTGACTTaGTGTGATCACTGGCGCCCAGGGGCATGGCAGGGAGTGGAGACT +
Preference number: 1 (lower is better)
Translates to: ISELSLVDAELYVVT*CDHWRPGAWQGVET
Trigger: AGTCTCCACTCCCTGCCATGCCCCTGGGCGCCAGTGATCACATCAAGTCACAACATACAGCTCAGCATCTACTAAAGATAACTCTGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
3UTR CCA 90 bp TATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTaGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTAGGCCATCAT +
Preference number: 1 (lower is better)
Translates to: YCLCCCCKQPRPRAA*EGKGSCTLELVGHH
Trigger: ATGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
3UTR TCA 90 bp AATCTTCTAGAGTTAAAAATCCACGATAGTGCACGTCGAAAGCTGTaGAGATCTGCCTTATCTCATTCCGATAGAGTCGCGCTTCCTTCT +
Preference number: 1 (lower is better)
Translates to: NLLELKIHDSARRKL*RSALSHSDRVALPS
Trigger: AGAAGGAAGCGCGACTCTATCGGAATGAGATAAGGCAGATCTTCACAGCTTTCGACGTGCACTATCGTGGATTTTTAACTCTAGAAGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR-3UTR TCA 90 bp CTGACAAGAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCCAGCAGTAGCAGCCTaGCTCAGGGCTGCTGGAGAC +
Preference number: 2 (lower is better)
Translates to: LTRAERGKNSKPTGWQGQPAVAA*LRAAGD
Trigger: GTCTCCAGCAGCCCTGAGTCAGGCTGCTACTGCTGG...CTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTCTTGTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000046485.5
ENSMUST00000220875.2
ENSMUST00000223114.2
3UTR-3UTR GCA 90 bp GAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAGTAGCAGAGTGAGGGACTCATaGGGAGTTAGCAGAGCCTCC +
Preference number: 2 (lower is better)
Translates to: EQRGGKTPNPLGGRASSSRVRDS*GVSRAS
Trigger: GGAGGCTCTGCTAACTCCGCATGAGTCCCTCACTCT...GCTACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
3UTR-3UTR GCA 90 bp CTGACAAGAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGTACACAGGTGCCCTGTaGACCTCTCTGTACCCCAGG +
Preference number: 2 (lower is better)
Translates to: LTRAERGKNSKPTGWQGQYTGAL*TSLYPR
Trigger: CCTGGGGTACAGAGAGGTGCACAGGGCACCTGTGTA...CTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTCTTGTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
3UTR-3UTR CCA 90 bp CAACCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATGCACCTTAGAGCTTTCATCCAGGGACGTCTaGGCAGGAACTCCAGGCAGG +
Preference number: 2 (lower is better)
Translates to: QPRPRAAWEGKGSCTLELSSRDV*AGTPGR
Trigger: CCTGCCTGGAGTTCCTGCCCAGACGTCCCTGGATGA...AAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
3UTR-3UTR TCA 90 bp GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCACTTGATCTGCCTCCCTaGACACCTCCAGCACTGTCC +
Preference number: 2 (lower is better)
Translates to: ELAEPPTHRIEDRKLTRALDLPP*TPPALS
Trigger: GGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAG...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR-3UTR CCA 90 bp ACCCGGCTCATTTTGACTGCCCATGGTTCATGGCGTATTCAAAGTCTCGGAAGCAAACTCCAAACCCACTaGGTGGCAGGGCCAGCAGTA +
Preference number: 2 (lower is better)
Translates to: TRLILTAHGSWRIQSLGSKLQTH*VAGPAV
Trigger: TACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTT...GCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR-3UTR GCA 90 bp GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCAGAGTGAGGGACTCATaGGGAGTTAGCAGAGCCTCC +
Preference number: 2 (lower is better)
Translates to: GDTHRRFPSLGPISAFKSRVRDS*GVSRAS
Trigger: GGAGGCTCTGCTAACTCCGCATGAGTCCCTCACTCT...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
3UTR-3UTR CCA 90 bp ACACAGTTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTAAAACTCCAAACCCACTaGGTGGCAGGGCCAGCAGTA +
Preference number: 2 (lower is better)
Translates to: TQFHTLPRLRSVRPSTRLKLQTH*VAGPAV
Trigger: TACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTT...TAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046485.5
ENSMUST00000220875.2
ENSMUST00000223114.2
3UTR-3UTR CCA 90 bp CTAGCTAGCTTCTCTGAAGAAAGAAGCCCAGGCTCAGGTCCAGGCTATCCTAAAACCCCAGTTACATCCTaGACTTCTCTGTATAAAGAA +
Preference number: 2 (lower is better)
Translates to: LASFSEERSPGSGPGYPKTPVTS*TSLYKE
Trigger: TTCTTTATACAGAGAAGTCCAGGATGTAACTGGGGT...TTTAGGATAGCCTGGACCTGAGCCTGGGCTTCTTTCTTCAGAGAAGCTAGCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
3UTR-3UTR CCA 90 bp ATCACCCAGTCTCCCACACTATCACAAGTAGCAGAGGAAGTCCAGGCTTGGTTCTCTCTTAGGTTCCTCTaGTTTAGCATAGCTAAAAAC +
Preference number: 2 (lower is better)
Translates to: ITQSPTLSQVAEEVQAWFSLRFL*FSIAKN
Trigger: GTTTTTAGCTATGCTAAACCAGAGGAACCTAAGAGA...GAACCAAGCCTGGACTTCCTCTGCTACTTGTGATAGTGTGGGAGACTGGGTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
3UTR-3UTR TCA 90 bp ACAAGTACACAGTTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTCAAAAACCCCTCAAGTaGAACACCAGAAGTGTTGGG +
Preference number: 2 (lower is better)
Translates to: TSTQFHTLPRLRSVRPSTQKPLK*NTRSVG
Trigger: CCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTG...AGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGTACTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR CAA 90 bp ACTAAGAGTTTACTCACAAGTACACAGTTTCATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCGAGCTG +
Preference number: 2 (lower is better)
Translates to: TKSLLTSTQFHTLPR*RSVRPSTRLQSIEL
Trigger: CAGCTCGATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGTACTTGTGAGTAAACTCTTAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046485.5
ENSMUST00000220875.2
ENSMUST00000223114.2
3UTR GCA 72 bp CCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATaGACCTTAGAGCTTGTAGGCCATCATCCAGGGACG +
Preference number: 3 (lower is better)
Translates to: PRPRAAWEGKGS*TLELVGHHPGT
Trigger: CGTCCCTGGATGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
3UTR CCA 72 bp CCCACACTATCACAAGTAGCAGAGGAAGTCCAGGCTTaGTTCATCTCTACCGTATGGTCCCTAGGGGCCCGT +
Preference number: 3 (lower is better)
Translates to: PTLSQVAEEVQA*FISTVWSLGAR
Trigger: ACGGGCCCCTAGGGACCATACGGTAGAGATGAACCAAGCCTGGACTTCCTCTGCTACTTGTGATAGTGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
3UTR-3UTR CAA 90 bp GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCAGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC +
Preference number: 3 (lower is better)
Translates to: ELAEPPTHRIEDRKLTRAVLAGS*GATRLN
Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR TCA 72 bp GGCGTATTCAAAGTCTCGGAAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCTGAACACCTCCAGCAC +
Preference number: 3 (lower is better)
Translates to: GVFKVSEADVTI*VLICLPEHLQH
Trigger: GTGCTGGAGGTGTTCAGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTGAATACGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR CCA 72 bp GTAGTTCACAAGCACCCGGCTCATTTTGACTGCCCATaGTTCATGGCGTATTCAAAGTCTCGGAAGCTGACG +
Preference number: 3 (lower is better)
Translates to: VVHKHPAHFDCP*FMAYSKSRKLT
Trigger: CGTCAGCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR TCA 72 bp AGCTGTCCAAGTAGTTCACAAGCACCCGGCTCATTTTaGCTGCCCATGGTTCATGGCGTATTCAAAGTCTCG +
Preference number: 3 (lower is better)
Translates to: SCPSSSQAPGSF*LPMVHGVFKVS
Trigger: CGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTACTTGGACAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR GCA 72 bp GTCCAAGTAGTTCACAAGCACCCGGCTCATTTTGACTaGCCATGGTTCATGGCGTATTCAAAGTCTCGGAAG +
Preference number: 3 (lower is better)
Translates to: VQVVHKHPAHFD*PWFMAYSKSRK
Trigger: CTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTACTTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR TCA 72 bp CAGTTACATCCTGGACTTCTCTGTATAAAGAATGGCTaGTGGCCTAGCCAGAGCTGCTTCCTCCTAGGCTTT +
Preference number: 3 (lower is better)
Translates to: QLHPGLLCIKNG*WPSQSCFLLGF
Trigger: AAAGCCTAGGAGGAAGCAGCTCTGGCTAGGCCATCAGCCATTCTTTATACAGAGAAGTCCAGGATGTAACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
3UTR CCA 72 bp TGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTaGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTA +
Preference number: 3 (lower is better)
Translates to: CCCCKQPRPRAA*EGKGSCTLELV
Trigger: TACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
3UTR-3UTR CAA 90 bp GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCCATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCA +
Preference number: 3 (lower is better)
Translates to: GDTHRRFPSLGPISAFKSHTLPR*RSVRPS
Trigger: TGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046485.5
ENSMUST00000220875.2
ENSMUST00000223114.2
3UTR-3UTR CAA 90 bp GGAGCCACTCGACTAAACGCCCTCTTGAAATCTTCTAGAGTTAAAAATCCACGACATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCA +
Preference number: 3 (lower is better)
Translates to: GATRLNALLKSSRVKNPRHTLPR*RSVRPS
Trigger: TGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG...TCGTGGATTTTTAACTCTAGAAGATTTCAAGAGGGCGTTTAGTCGAGTGGCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
3UTR GCA 72 bp CATCTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATTaGTTGGACACAGTAAGCTTGATGTTCAGCCGAGGT +
Preference number: 3 (lower is better)
Translates to: HLRVFVFLALAH*LDTVSLMFSRG
Trigger: ACCTCGGCTGAACATCAAGCTTACTGTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR TCA 90 bp GAGCTGACAAGAGTGAGGGACTCATGCGGAGTTAGCAGAGCCTCCAACCCACAGCTTGATCTGCCTCCCTaGACACCTCCAGCACTGTCC +
Preference number: 4 (lower is better)
Translates to: ELTRVRDSCGVSRASNPQLDLPP*TPPALS
Trigger: GGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAG...CTGTGGGTTGGAGGCTCTGCTAACTCCGCATGAGTCCCTCACTCTTGTCAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR TCA 90 bp AGGGAGTGGAGACTCCTAACTCTAGGATGGCTGGAGCTTCAGGTCCAGGGCAGAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCT +
Preference number: 4 (lower is better)
Translates to: REWRLLTLGWLELQVQGRADVTI*VLICLP
Trigger: AGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGC...TCTGCCCTGGACCTGAAGCTCCAGCCATCCTAGAGTTAGGAGTCTCCACTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR TCA 90 bp GAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAGTAGCCAAAAACCCCTCAAGTaGAACACCAGAAGTGTTGGG +
Preference number: 4 (lower is better)
Translates to: EQRGGKTPNPLGGRASSSQKPLK*NTRSVG
Trigger: CCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTG...GCTACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR TCA 90 bp CTGACAAGAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAAAGTCTCGGAAGCTaGCGTGACCATCTGAGTCTT +
Preference number: 4 (lower is better)
Translates to: LTRAERGKNSKPTGWQGQQSLGS*RDHLSL
Trigger: AAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTG...CTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTCTTGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR CCA 90 bp GAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAGTAGCCATCCGCTTCTATCTTaGAGGGTTTGTACCCAAACA +
Preference number: 4 (lower is better)
Translates to: EQRGGKTPNPLGGRASSSHPLLS*RVCTQT
Trigger: TGTTTGGGTACAAACCCTCCAAGATAGAAGCGGATG...GCTACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR TCA 90 bp GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCT +
Preference number: 4 (lower is better)
Translates to: ELAEPPTHRIEDRKLTRAADVTI*VLICLP
Trigger: AGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGC...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR CCA 90 bp CCTAGCCAGAGCTGCTTCCTCCTAGGCTTTGTACACAGGTGCCCTGTGCACCTCCATCCGCTTCTATCTTaGAGGGTTTGTACCCAAACA +
Preference number: 4 (lower is better)
Translates to: PSQSCFLLGFVHRCPVHLHPLLS*RVCTQT
Trigger: TGTTTGGGTACAAACCCTCCAAGATAGAAGCGGATG...GAGGTGCACAGGGCACCTGTGTACAAAGCCTAGGAGGAAGCAGCTCTGGCTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR TCA 90 bp AGGGCTGCTGGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCACAAAGTCTCGGAAGCTaGCGTGACCATCTGAGTCTT +
Preference number: 4 (lower is better)
Translates to: RAAGDTHRRFPSLGPISAQSLGS*RDHLSL
Trigger: AAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTG...TGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCCAGCAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR TCA 90 bp GCTGTTGTAAACAACCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATGCAAGTGTTGGGATTTACTaGAGACATCACAGCATCCGC +
Preference number: 4 (lower is better)
Translates to: AVVNNHDREQLGKERVHASVGIY*RHHSIR
Trigger: GCGGATGCTGTGATGTCTTCAGTAAATCCCAACACT...TGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CCA 90 bp CTGCTTCCTCCTAGGCTTTGTACACAGGTGCCCTGTGCACCTCTCTGTACCCCAAAACACCAGAAGTGTTaGGATTTACTGAAGACATCA +
Preference number: 4 (lower is better)
Translates to: LLPPRLCTQVPCAPLCTPKHQKC*DLLKTS
Trigger: TGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTT...TGGGGTACAGAGAGGTGCACAGGGCACCTGTGTACAAAGCCTAGGAGGAAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR TCA 90 bp TTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCCTTGATCTGCCTCCCTaGACACCTCCAGCACTGTCC +
Preference number: 4 (lower is better)
Translates to: FHTLPRLRSVRPSTRLQSLDLPP*TPPALS
Trigger: GGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAG...GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR TCA 90 bp GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCAGTGTTGGGATTTACTaGAGACATCACAGCATCCGC +
Preference number: 4 (lower is better)
Translates to: GDTHRRFPSLGPISAFKSSVGIY*RHHSIR
Trigger: GCGGATGCTGTGATGTCTTCAGTAAATCCCAACACT...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR CCA 90 bp ACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTAGGCCAAAACACCAGAAGTGTTaGGATTTACTGAAGACATCA +
Preference number: 4 (lower is better)
Translates to: TESSLGRKGFMHLRACRPKHQKC*DLLKTS
Trigger: TGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTT...TGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
3UTR CAA 72 bp CTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATTGCTaGGACACAGTAAGCTTGATGTTCAGCCGAGGTGGA +
Preference number: 4 (lower is better)
Translates to: LRVFVFLALAHC*DTVSLMFSRGG
Trigger: TCCACCTCGGCTGAACATCAAGCTTACTGTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR GCA 90 bp ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCCTTTCACCCATTTCCTaGGTTCTGAGGCGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: IMKTVEILSIHHPVSHTILSPIS*VLRRWL
Trigger: AAGCCAGCGCCTCAGAACGCAGGAAATGGGTGAAAG...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR GCA 90 bp TTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCCTTTCACCCATTTCCTaGGTTCTGAGGCGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: FHTLPRLRSVRPSTRLQSLSPIS*VLRRWL
Trigger: AAGCCAGCGCCTCAGAACGCAGGAAATGGGTGAAAG...GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR GCA 90 bp ATCACCCAGTCTCCCACACTATCACAAGTAGCAGAGGAAGTCCAGGCTTGGTTCGTTGTCTTCATCGCATaGTTTAAATACTTTCACCCA +
Preference number: 4 (lower is better)
Translates to: ITQSPTLSQVAEEVQAWFVVFIA*FKYFHP
Trigger: TGGGTGAAAGTATTTAAAGCATGCGATGAAGACAAC...GAACCAAGCCTGGACTTCCTCTGCTACTTGTGATAGTGTGGGAGACTGGGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
3UTR CAA 72 bp TCATCTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATaGCTTGGACACAGTAAGCTTGATGTTCAGCCGAGG +
Preference number: 4 (lower is better)
Translates to: SSQSLCFPSTSS*LGHSKLDVQPR
Trigger: CCTCGGCTGAACATCAAGCTTACTGTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR CCA 90 bp CTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTGGGAACATCCGCTTCTATCTTaGAGGGTTTGTACCCAAACA +
Preference number: 4 (lower is better)
Translates to: LYCLCCCCKQPRPRAAWEHPLLS*RVCTQT
Trigger: TGTTTGGGTACAAACCCTCCAAGATAGAAGCGGATG...TTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CCA 90 bp CATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCACTGCCCATGGTTCATaGCGTATTCAAAGTCTCGGA +
Preference number: 4 (lower is better)
Translates to: HTLPRLRSVRPSTRLQSITAHGS*RIQSLG
Trigger: TCCGAGACTTTGAATACGCCATGAACCATGGGCAGT...GATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR TCA 90 bp ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCAGTGTTGGGATTTACTaGAGACATCACAGCATCCGC +
Preference number: 4 (lower is better)
Translates to: IMKTVEILSIHHPVSHTISVGIY*RHHSIR
Trigger: GCGGATGCTGTGATGTCTTCAGTAAATCCCAACACT...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR GCA 90 bp TTACGTAAAACCTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCTTTCACCCATTTCCTaGGTTCTGAGGCGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: LRKTSHFIVCVAVVNNHDLSPIS*VLRRWL
Trigger: AAGCCAGCGCCTCAGAACGCAGGAAATGGGTGAAAG...GTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAGGTTTTACGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CCA 90 bp TTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCACTGCCCATGGTTCATaGCGTATTCAAAGTCTCGGA +
Preference number: 4 (lower is better)
Translates to: FHTLPRLRSVRPSTRLQSTAHGS*RIQSLG
Trigger: TCCGAGACTTTGAATACGCCATGAACCATGGGCAGT...GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR GCA 90 bp ATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTGGGAAGGAAGTTGTCTTCATCGCATaGTTTAAATACTTTCACCCA +
Preference number: 4 (lower is better)
Translates to: IVCVAVVNNHDREQLGKEVVFIA*FKYFHP
Trigger: TGGGTGAAAGTATTTAAAGCATGCGATGAAGACAAC...TTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR TCA 90 bp TTACGTAAAACCTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCAAAAACCCCTCAAGTaGAACACCAGAAGTGTTGGG +
Preference number: 4 (lower is better)
Translates to: LRKTSHFIVCVAVVNNHDQKPLK*NTRSVG
Trigger: CCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTG...GTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAGGTTTTACGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
3UTR CAA 72 bp TTACTCACAAGTACACAGTTTCATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCAACTAGATTACAATCC +
Preference number: 4 (lower is better)
Translates to: LLTSTQFHTLPR*RSVRPSTRLQS
Trigger: GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGTACTTGTGAGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046485.5
ENSMUST00000220875.2
ENSMUST00000223114.2
CDS-3UTR CAA 90 bp CTTAGAGCTTGTAGGCCATCATCCAGGGACGTCTGGGCAGGAACTCCAGGCAGGCGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGA +
Preference number: 5 (lower is better)
Translates to: LRACRPSSRDVWAGTPGRRLLGA*RLPLTR
Trigger: TCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCG...CCTGCCTGGAGTTCCTGCCCAGACGTCCCTGGATGATGGCCTACAAGCTCTAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CAA 90 bp CTGCTTCCTCCTAGGCTTTGTACACAGGTGCCCTGTGCACCTCTCTGTACCCCACGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGA +
Preference number: 5 (lower is better)
Translates to: LLPPRLCTQVPCAPLCTPRLLGA*RLPLTR
Trigger: TCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCG...TGGGGTACAGAGAGGTGCACAGGGCACCTGTGTACAAAGCCTAGGAGGAAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR CAA 90 bp GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCACGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGA +
Preference number: 5 (lower is better)
Translates to: ELAEPPTHRIEDRKLTRARLLGA*RLPLTR
Trigger: TCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCG...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR CAA 90 bp GGCGCATCATCTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATTGCTTGGACACGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC +
Preference number: 5 (lower is better)
Translates to: GASSQSLCFPSTSSLLGHVLAGS*GATRLN
Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...GTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAGATGATGCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR CAA 90 bp CTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC +
Preference number: 5 (lower is better)
Translates to: LTLYCLCCCCKQPRPRAAVLAGS*GATRLN
Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...AGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CAA 90 bp CATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC +
Preference number: 5 (lower is better)
Translates to: HTLPRLRSVRPSTRLQSIVLAGS*GATRLN
Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...GATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR CAA 90 bp CACGTCGAAAGCTGTGAAGATCTGCCTTATCTCATTCCGATAGAGTCGCGCTTCCGCTTCTTGGAGGGTTaGTACCCAAACAGCATTACA +
Preference number: 5 (lower is better)
Translates to: HVESCEDLPYLIPIESRFRFLEG*YPNSIT
Trigger: TGTAATGCTGTTTGGGTACAAACCCTCCAAGAAGCG...GAAGCGCGACTCTATCGGAATGAGATAAGGCAGATCTTCACAGCTTTCGACGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220875.2
CDS-3UTR CAA 90 bp GAGAGCAGCTTGGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTAGGCCATCATCTATCTTGGAGGGTTaGTACCCAAACAGCATTACA +
Preference number: 5 (lower is better)
Translates to: ESSLGRKGFMHLRACRPSSILEG*YPNSIT
Trigger: TGTAATGCTGTTTGGGTACAAACCCTCCAAGATAGA...TGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CAA 90 bp GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCGCATCCGCTTCTATCTaGGAGGGTTTGTACCCAAAC +
Preference number: 5 (lower is better)
Translates to: GDTHRRFPSLGPISAFKSASASI*EGLYPN
Trigger: GTTTGGGTACAAACCCTCCAAGATAGAAGCGGATGC...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS CCA 90 bp TCTTTACGGCACTCAAAAACCCCTCAAGTGAAACACCAGAAGTGTTaGGATTTACTGAAGACATCACAGCATCCGCTTCTATCTTGGAGG +
Preference number: 5 (lower is better)
Translates to: SLRHSKTPQVKHQKC*DLLKTSQHPLLSWR
Trigger: CCTCCAAGATAGAAGCGGATGCTGTGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTGAGTGCCGTAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046485.5
ENSMUST00000221929.2
ENSMUST00000223114.2
CDS-3UTR CAA 90 bp ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCGCATCCGCTTCTATCTaGGAGGGTTTGTACCCAAAC +
Preference number: 5 (lower is better)
Translates to: IMKTVEILSIHHPVSHTIASASI*EGLYPN
Trigger: GTTTGGGTACAAACCCTCCAAGATAGAAGCGGATGC...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR CAA 90 bp CGTAAAACCTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGCATCCGCTTCTATCTaGGAGGGTTTGTACCCAAAC +
Preference number: 5 (lower is better)
Translates to: RKTSHFIVCVAVVNNHDRASASI*EGLYPN
Trigger: GTTTGGGTACAAACCCTCCAAGATAGAAGCGGATGC...TCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAGGTTTTACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CAA 90 bp CTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTGAAACACCAGAAGTGTaGGGATTTACTGAAGACATC +
Preference number: 5 (lower is better)
Translates to: LTLYCLCCCCKQPRPRAAETPEV*GFTEDI
Trigger: GATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTC...AGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS-3UTR CAA 90 bp CATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCGAAACACCAGAAGTGTaGGGATTTACTGAAGACATC +
Preference number: 5 (lower is better)
Translates to: HTLPRLRSVRPSTRLQSIETPEV*GFTEDI
Trigger: GATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTC...GATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS-3UTR CAA 90 bp ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCTCTATCTTGGAGGGTTaGTACCCAAACAGCATTACA +
Preference number: 5 (lower is better)
Translates to: IMKTVEILSIHHPVSHTISILEG*YPNSIT
Trigger: TGTAATGCTGTTTGGGTACAAACCCTCCAAGATAGA...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046485.5
CDS-3UTR CAA 90 bp ACACAGTTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTAGAAACACCAGAAGTGTaGGGATTTACTGAAGACATC +
Preference number: 5 (lower is better)
Translates to: TQFHTLPRLRSVRPSTRLETPEV*GFTEDI
Trigger: GATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTC...TAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046485.5
ENSMUST00000223114.2
CDS CAA 90 bp CCCATTTCCTGCGTTCTGAGGCGCTGGCTTCGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGAACATCGCCACCGACACGGAGACCA +
Preference number: 6 (lower is better)
Translates to: PISCVLRRWLRLLGA*RLPLTRTSPPTRRP
Trigger: TGGTCTCCGTGTCGGTGGCGATGTTCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCGAAGCCAGCGCCTCAGAACGCAGGAAATGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221929.2
CDS CAA 90 bp CTCTTTACGGCACTCAAAAACCCCTCAAGTGAAACACCAGAAGTGTaGGGATTTACTGAAGACATCACAGCATCCGCTTCTATCTTGGAG +
Preference number: 6 (lower is better)
Translates to: LFTALKNPSSETPEV*GFTEDITASASILE
Trigger: CTCCAAGATAGAAGCGGATGCTGTGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTGAGTGCCGTAAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046485.5
ENSMUST00000221929.2
ENSMUST00000223114.2