Pregenerated sensors for EFCAB11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021176Ensembl transcript IDs: ENSMUST00000046485.5, ENSMUST00000220875.2, ENSMUST00000221929.2, ENSMUST00000223114.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTAAACAACCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATaGACCTTAGAGCTTGTAGGCCATCATCCAGGGACGTCTGGGCAG | + |
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Preference number: 1 (lower is better) Translates to: CKQPRPRAAWEGKGS*TLELVGHHPGTSGQ Trigger: CTGCCCAGACGTCCCTGGATGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| 3UTR TCA 90 bp | ATGGTTCATGGCGTATTCAAAGTCTCGGAAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCTGAACACCTCCAGCACTGTCCTCGC | + |
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Preference number: 1 (lower is better) Translates to: MVHGVFKVSEADVTI*VLICLPEHLQHCPR Trigger: GCGAGGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTGAATACGCCATGAACCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR TCA 90 bp | AATCCATCGAGCTGTCCAAGTAGTTCACAAGCACCCGGCTCATTTTaGCTGCCCATGGTTCATGGCGTATTCAAAGTCTCGGAAGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: NPSSCPSSSQAPGSF*LPMVHGVFKVSEAD Trigger: GTCAGCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTACTTGGACAGCTCGATGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR TCA 90 bp | ATTTCAGAGTTATCTTTAGTAGATGCTGAGCTGTATGTTGTGACTTaGTGTGATCACTGGCGCCCAGGGGCATGGCAGGGAGTGGAGACT | + |
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Preference number: 1 (lower is better) Translates to: ISELSLVDAELYVVT*CDHWRPGAWQGVET Trigger: AGTCTCCACTCCCTGCCATGCCCCTGGGCGCCAGTGATCACATCAAGTCACAACATACAGCTCAGCATCTACTAAAGATAACTCTGAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| 3UTR CCA 90 bp | TATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTaGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTAGGCCATCAT | + |
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Preference number: 1 (lower is better) Translates to: YCLCCCCKQPRPRAA*EGKGSCTLELVGHH Trigger: ATGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| 3UTR TCA 90 bp | AATCTTCTAGAGTTAAAAATCCACGATAGTGCACGTCGAAAGCTGTaGAGATCTGCCTTATCTCATTCCGATAGAGTCGCGCTTCCTTCT | + |
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Preference number: 1 (lower is better) Translates to: NLLELKIHDSARRKL*RSALSHSDRVALPS Trigger: AGAAGGAAGCGCGACTCTATCGGAATGAGATAAGGCAGATCTTCACAGCTTTCGACGTGCACTATCGTGGATTTTTAACTCTAGAAGATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR-3UTR TCA 90 bp | CTGACAAGAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCCAGCAGTAGCAGCCTaGCTCAGGGCTGCTGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: LTRAERGKNSKPTGWQGQPAVAA*LRAAGD Trigger: GTCTCCAGCAGCCCTGAGTCAGGCTGCTACTGCTGG...CTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTCTTGTCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000046485.5 ENSMUST00000220875.2 ENSMUST00000223114.2 |
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| 3UTR-3UTR GCA 90 bp | GAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAGTAGCAGAGTGAGGGACTCATaGGGAGTTAGCAGAGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: EQRGGKTPNPLGGRASSSRVRDS*GVSRAS Trigger: GGAGGCTCTGCTAACTCCGCATGAGTCCCTCACTCT...GCTACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| 3UTR-3UTR GCA 90 bp | CTGACAAGAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGTACACAGGTGCCCTGTaGACCTCTCTGTACCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: LTRAERGKNSKPTGWQGQYTGAL*TSLYPR Trigger: CCTGGGGTACAGAGAGGTGCACAGGGCACCTGTGTA...CTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTCTTGTCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| 3UTR-3UTR CCA 90 bp | CAACCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATGCACCTTAGAGCTTTCATCCAGGGACGTCTaGGCAGGAACTCCAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: QPRPRAAWEGKGSCTLELSSRDV*AGTPGR Trigger: CCTGCCTGGAGTTCCTGCCCAGACGTCCCTGGATGA...AAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| 3UTR-3UTR TCA 90 bp | GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCACTTGATCTGCCTCCCTaGACACCTCCAGCACTGTCC | + |
|
Preference number: 2 (lower is better) Translates to: ELAEPPTHRIEDRKLTRALDLPP*TPPALS Trigger: GGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAG...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCGGCTCATTTTGACTGCCCATGGTTCATGGCGTATTCAAAGTCTCGGAAGCAAACTCCAAACCCACTaGGTGGCAGGGCCAGCAGTA | + |
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Preference number: 2 (lower is better) Translates to: TRLILTAHGSWRIQSLGSKLQTH*VAGPAV Trigger: TACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTT...GCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR-3UTR GCA 90 bp | GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCAGAGTGAGGGACTCATaGGGAGTTAGCAGAGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: GDTHRRFPSLGPISAFKSRVRDS*GVSRAS Trigger: GGAGGCTCTGCTAACTCCGCATGAGTCCCTCACTCT...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| 3UTR-3UTR CCA 90 bp | ACACAGTTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTAAAACTCCAAACCCACTaGGTGGCAGGGCCAGCAGTA | + |
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Preference number: 2 (lower is better) Translates to: TQFHTLPRLRSVRPSTRLKLQTH*VAGPAV Trigger: TACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTT...TAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046485.5 ENSMUST00000220875.2 ENSMUST00000223114.2 |
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| 3UTR-3UTR CCA 90 bp | CTAGCTAGCTTCTCTGAAGAAAGAAGCCCAGGCTCAGGTCCAGGCTATCCTAAAACCCCAGTTACATCCTaGACTTCTCTGTATAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: LASFSEERSPGSGPGYPKTPVTS*TSLYKE Trigger: TTCTTTATACAGAGAAGTCCAGGATGTAACTGGGGT...TTTAGGATAGCCTGGACCTGAGCCTGGGCTTCTTTCTTCAGAGAAGCTAGCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| 3UTR-3UTR CCA 90 bp | ATCACCCAGTCTCCCACACTATCACAAGTAGCAGAGGAAGTCCAGGCTTGGTTCTCTCTTAGGTTCCTCTaGTTTAGCATAGCTAAAAAC | + |
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Preference number: 2 (lower is better) Translates to: ITQSPTLSQVAEEVQAWFSLRFL*FSIAKN Trigger: GTTTTTAGCTATGCTAAACCAGAGGAACCTAAGAGA...GAACCAAGCCTGGACTTCCTCTGCTACTTGTGATAGTGTGGGAGACTGGGTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| 3UTR-3UTR TCA 90 bp | ACAAGTACACAGTTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTCAAAAACCCCTCAAGTaGAACACCAGAAGTGTTGGG | + |
|
Preference number: 2 (lower is better) Translates to: TSTQFHTLPRLRSVRPSTQKPLK*NTRSVG Trigger: CCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTG...AGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGTACTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR CAA 90 bp | ACTAAGAGTTTACTCACAAGTACACAGTTTCATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: TKSLLTSTQFHTLPR*RSVRPSTRLQSIEL Trigger: CAGCTCGATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGTACTTGTGAGTAAACTCTTAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046485.5 ENSMUST00000220875.2 ENSMUST00000223114.2 |
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| 3UTR GCA 72 bp | CCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATaGACCTTAGAGCTTGTAGGCCATCATCCAGGGACG | + |
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Preference number: 3 (lower is better) Translates to: PRPRAAWEGKGS*TLELVGHHPGT Trigger: CGTCCCTGGATGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| 3UTR CCA 72 bp | CCCACACTATCACAAGTAGCAGAGGAAGTCCAGGCTTaGTTCATCTCTACCGTATGGTCCCTAGGGGCCCGT | + |
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Preference number: 3 (lower is better) Translates to: PTLSQVAEEVQA*FISTVWSLGAR Trigger: ACGGGCCCCTAGGGACCATACGGTAGAGATGAACCAAGCCTGGACTTCCTCTGCTACTTGTGATAGTGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| 3UTR-3UTR CAA 90 bp | GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCAGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC | + |
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Preference number: 3 (lower is better) Translates to: ELAEPPTHRIEDRKLTRAVLAGS*GATRLN Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR TCA 72 bp | GGCGTATTCAAAGTCTCGGAAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCTGAACACCTCCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: GVFKVSEADVTI*VLICLPEHLQH Trigger: GTGCTGGAGGTGTTCAGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTGAATACGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR CCA 72 bp | GTAGTTCACAAGCACCCGGCTCATTTTGACTGCCCATaGTTCATGGCGTATTCAAAGTCTCGGAAGCTGACG | + |
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Preference number: 3 (lower is better) Translates to: VVHKHPAHFDCP*FMAYSKSRKLT Trigger: CGTCAGCTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR TCA 72 bp | AGCTGTCCAAGTAGTTCACAAGCACCCGGCTCATTTTaGCTGCCCATGGTTCATGGCGTATTCAAAGTCTCG | + |
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Preference number: 3 (lower is better) Translates to: SCPSSSQAPGSF*LPMVHGVFKVS Trigger: CGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTACTTGGACAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR GCA 72 bp | GTCCAAGTAGTTCACAAGCACCCGGCTCATTTTGACTaGCCATGGTTCATGGCGTATTCAAAGTCTCGGAAG | + |
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Preference number: 3 (lower is better) Translates to: VQVVHKHPAHFD*PWFMAYSKSRK Trigger: CTTCCGAGACTTTGAATACGCCATGAACCATGGGCAGTCAAAATGAGCCGGGTGCTTGTGAACTACTTGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR TCA 72 bp | CAGTTACATCCTGGACTTCTCTGTATAAAGAATGGCTaGTGGCCTAGCCAGAGCTGCTTCCTCCTAGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: QLHPGLLCIKNG*WPSQSCFLLGF Trigger: AAAGCCTAGGAGGAAGCAGCTCTGGCTAGGCCATCAGCCATTCTTTATACAGAGAAGTCCAGGATGTAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| 3UTR CCA 72 bp | TGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTaGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTA | + |
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Preference number: 3 (lower is better) Translates to: CCCCKQPRPRAA*EGKGSCTLELV Trigger: TACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| 3UTR-3UTR CAA 90 bp | GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCCATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCA | + |
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Preference number: 3 (lower is better) Translates to: GDTHRRFPSLGPISAFKSHTLPR*RSVRPS Trigger: TGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046485.5 ENSMUST00000220875.2 ENSMUST00000223114.2 |
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| 3UTR-3UTR CAA 90 bp | GGAGCCACTCGACTAAACGCCCTCTTGAAATCTTCTAGAGTTAAAAATCCACGACATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCA | + |
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Preference number: 3 (lower is better) Translates to: GATRLNALLKSSRVKNPRHTLPR*RSVRPS Trigger: TGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG...TCGTGGATTTTTAACTCTAGAAGATTTCAAGAGGGCGTTTAGTCGAGTGGCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| 3UTR GCA 72 bp | CATCTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATTaGTTGGACACAGTAAGCTTGATGTTCAGCCGAGGT | + |
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Preference number: 3 (lower is better) Translates to: HLRVFVFLALAH*LDTVSLMFSRG Trigger: ACCTCGGCTGAACATCAAGCTTACTGTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR TCA 90 bp | GAGCTGACAAGAGTGAGGGACTCATGCGGAGTTAGCAGAGCCTCCAACCCACAGCTTGATCTGCCTCCCTaGACACCTCCAGCACTGTCC | + |
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Preference number: 4 (lower is better) Translates to: ELTRVRDSCGVSRASNPQLDLPP*TPPALS Trigger: GGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAG...CTGTGGGTTGGAGGCTCTGCTAACTCCGCATGAGTCCCTCACTCTTGTCAGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR TCA 90 bp | AGGGAGTGGAGACTCCTAACTCTAGGATGGCTGGAGCTTCAGGTCCAGGGCAGAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: REWRLLTLGWLELQVQGRADVTI*VLICLP Trigger: AGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGC...TCTGCCCTGGACCTGAAGCTCCAGCCATCCTAGAGTTAGGAGTCTCCACTCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR TCA 90 bp | GAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAGTAGCCAAAAACCCCTCAAGTaGAACACCAGAAGTGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: EQRGGKTPNPLGGRASSSQKPLK*NTRSVG Trigger: CCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTG...GCTACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR TCA 90 bp | CTGACAAGAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAAAGTCTCGGAAGCTaGCGTGACCATCTGAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: LTRAERGKNSKPTGWQGQQSLGS*RDHLSL Trigger: AAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTG...CTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTCTTGTCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR CCA 90 bp | GAGCAGAGAGGGGGAAAAACTCCAAACCCACTGGGTGGCAGGGCCAGCAGTAGCCATCCGCTTCTATCTTaGAGGGTTTGTACCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: EQRGGKTPNPLGGRASSSHPLLS*RVCTQT Trigger: TGTTTGGGTACAAACCCTCCAAGATAGAAGCGGATG...GCTACTGCTGGCCCTGCCACCCAGTGGGTTTGGAGTTTTTCCCCCTCTCTGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR TCA 90 bp | GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCAGCTGACGTGACCATCTaGGTCTTGATCTGCCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: ELAEPPTHRIEDRKLTRAADVTI*VLICLP Trigger: AGGGAGGCAGATCAAGACTCAGATGGTCACGTCAGC...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR CCA 90 bp | CCTAGCCAGAGCTGCTTCCTCCTAGGCTTTGTACACAGGTGCCCTGTGCACCTCCATCCGCTTCTATCTTaGAGGGTTTGTACCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: PSQSCFLLGFVHRCPVHLHPLLS*RVCTQT Trigger: TGTTTGGGTACAAACCCTCCAAGATAGAAGCGGATG...GAGGTGCACAGGGCACCTGTGTACAAAGCCTAGGAGGAAGCAGCTCTGGCTAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR TCA 90 bp | AGGGCTGCTGGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCACAAAGTCTCGGAAGCTaGCGTGACCATCTGAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: RAAGDTHRRFPSLGPISAQSLGS*RDHLSL Trigger: AAGACTCAGATGGTCACGTCAGCTTCCGAGACTTTG...TGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCCAGCAGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR TCA 90 bp | GCTGTTGTAAACAACCACGACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATGCAAGTGTTGGGATTTACTaGAGACATCACAGCATCCGC | + |
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Preference number: 4 (lower is better) Translates to: AVVNNHDREQLGKERVHASVGIY*RHHSIR Trigger: GCGGATGCTGTGATGTCTTCAGTAAATCCCAACACT...TGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CCA 90 bp | CTGCTTCCTCCTAGGCTTTGTACACAGGTGCCCTGTGCACCTCTCTGTACCCCAAAACACCAGAAGTGTTaGGATTTACTGAAGACATCA | + |
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Preference number: 4 (lower is better) Translates to: LLPPRLCTQVPCAPLCTPKHQKC*DLLKTS Trigger: TGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTT...TGGGGTACAGAGAGGTGCACAGGGCACCTGTGTACAAAGCCTAGGAGGAAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR TCA 90 bp | TTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCCTTGATCTGCCTCCCTaGACACCTCCAGCACTGTCC | + |
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Preference number: 4 (lower is better) Translates to: FHTLPRLRSVRPSTRLQSLDLPP*TPPALS Trigger: GGACAGTGCTGGAGGTGTTCAGGGAGGCAGATCAAG...GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR TCA 90 bp | GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCAGTGTTGGGATTTACTaGAGACATCACAGCATCCGC | + |
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Preference number: 4 (lower is better) Translates to: GDTHRRFPSLGPISAFKSSVGIY*RHHSIR Trigger: GCGGATGCTGTGATGTCTTCAGTAAATCCCAACACT...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR CCA 90 bp | ACCGAGAGCAGCTTGGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTAGGCCAAAACACCAGAAGTGTTaGGATTTACTGAAGACATCA | + |
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Preference number: 4 (lower is better) Translates to: TESSLGRKGFMHLRACRPKHQKC*DLLKTS Trigger: TGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTT...TGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTCGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| 3UTR CAA 72 bp | CTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATTGCTaGGACACAGTAAGCTTGATGTTCAGCCGAGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LRVFVFLALAHC*DTVSLMFSRGG Trigger: TCCACCTCGGCTGAACATCAAGCTTACTGTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR GCA 90 bp | ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCCTTTCACCCATTTCCTaGGTTCTGAGGCGCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: IMKTVEILSIHHPVSHTILSPIS*VLRRWL Trigger: AAGCCAGCGCCTCAGAACGCAGGAAATGGGTGAAAG...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR GCA 90 bp | TTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCCTTTCACCCATTTCCTaGGTTCTGAGGCGCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: FHTLPRLRSVRPSTRLQSLSPIS*VLRRWL Trigger: AAGCCAGCGCCTCAGAACGCAGGAAATGGGTGAAAG...GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR GCA 90 bp | ATCACCCAGTCTCCCACACTATCACAAGTAGCAGAGGAAGTCCAGGCTTGGTTCGTTGTCTTCATCGCATaGTTTAAATACTTTCACCCA | + |
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Preference number: 4 (lower is better) Translates to: ITQSPTLSQVAEEVQAWFVVFIA*FKYFHP Trigger: TGGGTGAAAGTATTTAAAGCATGCGATGAAGACAAC...GAACCAAGCCTGGACTTCCTCTGCTACTTGTGATAGTGTGGGAGACTGGGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| 3UTR CAA 72 bp | TCATCTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATaGCTTGGACACAGTAAGCTTGATGTTCAGCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: SSQSLCFPSTSS*LGHSKLDVQPR Trigger: CCTCGGCTGAACATCAAGCTTACTGTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR CCA 90 bp | CTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTGGGAACATCCGCTTCTATCTTaGAGGGTTTGTACCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: LYCLCCCCKQPRPRAAWEHPLLS*RVCTQT Trigger: TGTTTGGGTACAAACCCTCCAAGATAGAAGCGGATG...TTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CCA 90 bp | CATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCACTGCCCATGGTTCATaGCGTATTCAAAGTCTCGGA | + |
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Preference number: 4 (lower is better) Translates to: HTLPRLRSVRPSTRLQSITAHGS*RIQSLG Trigger: TCCGAGACTTTGAATACGCCATGAACCATGGGCAGT...GATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR TCA 90 bp | ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCAGTGTTGGGATTTACTaGAGACATCACAGCATCCGC | + |
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Preference number: 4 (lower is better) Translates to: IMKTVEILSIHHPVSHTISVGIY*RHHSIR Trigger: GCGGATGCTGTGATGTCTTCAGTAAATCCCAACACT...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR GCA 90 bp | TTACGTAAAACCTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCTTTCACCCATTTCCTaGGTTCTGAGGCGCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LRKTSHFIVCVAVVNNHDLSPIS*VLRRWL Trigger: AAGCCAGCGCCTCAGAACGCAGGAAATGGGTGAAAG...GTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAGGTTTTACGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CCA 90 bp | TTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCACTGCCCATGGTTCATaGCGTATTCAAAGTCTCGGA | + |
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Preference number: 4 (lower is better) Translates to: FHTLPRLRSVRPSTRLQSTAHGS*RIQSLG Trigger: TCCGAGACTTTGAATACGCCATGAACCATGGGCAGT...GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR GCA 90 bp | ATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTTGGGAAGGAAGTTGTCTTCATCGCATaGTTTAAATACTTTCACCCA | + |
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Preference number: 4 (lower is better) Translates to: IVCVAVVNNHDREQLGKEVVFIA*FKYFHP Trigger: TGGGTGAAAGTATTTAAAGCATGCGATGAAGACAAC...TTCCTTCCCAAGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR TCA 90 bp | TTACGTAAAACCTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCAAAAACCCCTCAAGTaGAACACCAGAAGTGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: LRKTSHFIVCVAVVNNHDQKPLK*NTRSVG Trigger: CCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTG...GTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAGGTTTTACGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| 3UTR CAA 72 bp | TTACTCACAAGTACACAGTTTCATACCCTTCCTAGATaGAGGTCTGTGAGACCTTCAACTAGATTACAATCC | + |
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Preference number: 4 (lower is better) Translates to: LLTSTQFHTLPR*RSVRPSTRLQS Trigger: GGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGTACTTGTGAGTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046485.5 ENSMUST00000220875.2 ENSMUST00000223114.2 |
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| CDS-3UTR CAA 90 bp | CTTAGAGCTTGTAGGCCATCATCCAGGGACGTCTGGGCAGGAACTCCAGGCAGGCGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGA | + |
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Preference number: 5 (lower is better) Translates to: LRACRPSSRDVWAGTPGRRLLGA*RLPLTR Trigger: TCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCG...CCTGCCTGGAGTTCCTGCCCAGACGTCCCTGGATGATGGCCTACAAGCTCTAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CAA 90 bp | CTGCTTCCTCCTAGGCTTTGTACACAGGTGCCCTGTGCACCTCTCTGTACCCCACGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGA | + |
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Preference number: 5 (lower is better) Translates to: LLPPRLCTQVPCAPLCTPRLLGA*RLPLTR Trigger: TCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCG...TGGGGTACAGAGAGGTGCACAGGGCACCTGTGTACAAAGCCTAGGAGGAAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR CAA 90 bp | GAGTTAGCAGAGCCTCCAACCCACAGGATAGAGGACAGAAAGCTGACAAGAGCACGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGA | + |
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Preference number: 5 (lower is better) Translates to: ELAEPPTHRIEDRKLTRARLLGA*RLPLTR Trigger: TCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCG...TGCTCTTGTCAGCTTTCTGTCCTCTATCCTGTGGGTTGGAGGCTCTGCTAACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR CAA 90 bp | GGCGCATCATCTCAGAGTCTTTGTTTTCCTAGCACTAGCTCATTGCTTGGACACGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC | + |
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Preference number: 5 (lower is better) Translates to: GASSQSLCFPSTSSLLGHVLAGS*GATRLN Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...GTGTCCAAGCAATGAGCTAGTGCTAGGAAAACAAAGACTCTGAGATGATGCGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR CAA 90 bp | CTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC | + |
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Preference number: 5 (lower is better) Translates to: LTLYCLCCCCKQPRPRAAVLAGS*GATRLN Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...AGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CAA 90 bp | CATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCGTCCTCGCTGGTAGCTaGGGAGCCACTCGACTAAAC | + |
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Preference number: 5 (lower is better) Translates to: HTLPRLRSVRPSTRLQSIVLAGS*GATRLN Trigger: GTTTAGTCGAGTGGCTCCCAAGCTACCAGCGAGGAC...GATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR CAA 90 bp | CACGTCGAAAGCTGTGAAGATCTGCCTTATCTCATTCCGATAGAGTCGCGCTTCCGCTTCTTGGAGGGTTaGTACCCAAACAGCATTACA | + |
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Preference number: 5 (lower is better) Translates to: HVESCEDLPYLIPIESRFRFLEG*YPNSIT Trigger: TGTAATGCTGTTTGGGTACAAACCCTCCAAGAAGCG...GAAGCGCGACTCTATCGGAATGAGATAAGGCAGATCTTCACAGCTTTCGACGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220875.2 |
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| CDS-3UTR CAA 90 bp | GAGAGCAGCTTGGGAAGGAAAGGGTTCATGCACCTTAGAGCTTGTAGGCCATCATCTATCTTGGAGGGTTaGTACCCAAACAGCATTACA | + |
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Preference number: 5 (lower is better) Translates to: ESSLGRKGFMHLRACRPSSILEG*YPNSIT Trigger: TGTAATGCTGTTTGGGTACAAACCCTCCAAGATAGA...TGATGGCCTACAAGCTCTAAGGTGCATGAACCCTTTCCTTCCCAAGCTGCTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CAA 90 bp | GGAGACACACACAGGAGATTCCCATCTCTAGGTCCAATATCAGCATTCAAAAGCGCATCCGCTTCTATCTaGGAGGGTTTGTACCCAAAC | + |
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Preference number: 5 (lower is better) Translates to: GDTHRRFPSLGPISAFKSASASI*EGLYPN Trigger: GTTTGGGTACAAACCCTCCAAGATAGAAGCGGATGC...GCTTTTGAATGCTGATATTGGACCTAGAGATGGGAATCTCCTGTGTGTGTCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS CCA 90 bp | TCTTTACGGCACTCAAAAACCCCTCAAGTGAAACACCAGAAGTGTTaGGATTTACTGAAGACATCACAGCATCCGCTTCTATCTTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SLRHSKTPQVKHQKC*DLLKTSQHPLLSWR Trigger: CCTCCAAGATAGAAGCGGATGCTGTGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTGAGTGCCGTAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000046485.5 ENSMUST00000221929.2 ENSMUST00000223114.2 |
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| CDS-3UTR CAA 90 bp | ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCGCATCCGCTTCTATCTaGGAGGGTTTGTACCCAAAC | + |
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Preference number: 5 (lower is better) Translates to: IMKTVEILSIHHPVSHTIASASI*EGLYPN Trigger: GTTTGGGTACAAACCCTCCAAGATAGAAGCGGATGC...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR CAA 90 bp | CGTAAAACCTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGCATCCGCTTCTATCTaGGAGGGTTTGTACCCAAAC | + |
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Preference number: 5 (lower is better) Translates to: RKTSHFIVCVAVVNNHDRASASI*EGLYPN Trigger: GTTTGGGTACAAACCCTCCAAGATAGAAGCGGATGC...TCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAGGTTTTACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CAA 90 bp | CTCACACTTTATTGTTTGTGTTGCTGTTGTAAACAACCACGACCGAGAGCAGCTGAAACACCAGAAGTGTaGGGATTTACTGAAGACATC | + |
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Preference number: 5 (lower is better) Translates to: LTLYCLCCCCKQPRPRAAETPEV*GFTEDI Trigger: GATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTC...AGCTGCTCTCGGTCGTGGTTGTTTACAACAGCAACACAAACAATAAAGTGTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS-3UTR CAA 90 bp | CATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTACAATCCATCGAAACACCAGAAGTGTaGGGATTTACTGAAGACATC | + |
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Preference number: 5 (lower is better) Translates to: HTLPRLRSVRPSTRLQSIETPEV*GFTEDI Trigger: GATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTC...GATGGATTGTAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS-3UTR CAA 90 bp | ATCATGAAAACAGTAGAAATCCTATCTATCCATCACCCAGTCTCCCACACTATCTCTATCTTGGAGGGTTaGTACCCAAACAGCATTACA | + |
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Preference number: 5 (lower is better) Translates to: IMKTVEILSIHHPVSHTISILEG*YPNSIT Trigger: TGTAATGCTGTTTGGGTACAAACCCTCCAAGATAGA...GATAGTGTGGGAGACTGGGTGATGGATAGATAGGATTTCTACTGTTTTCATGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046485.5 |
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| CDS-3UTR CAA 90 bp | ACACAGTTTCATACCCTTCCTAGATTGAGGTCTGTGAGACCTTCAACTAGATTAGAAACACCAGAAGTGTaGGGATTTACTGAAGACATC | + |
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Preference number: 5 (lower is better) Translates to: TQFHTLPRLRSVRPSTRLETPEV*GFTEDI Trigger: GATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTC...TAATCTAGTTGAAGGTCTCACAGACCTCAATCTAGGAAGGGTATGAAACTGTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046485.5 ENSMUST00000223114.2 |
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| CDS CAA 90 bp | CCCATTTCCTGCGTTCTGAGGCGCTGGCTTCGCCTGCTCGGGGCCTaGCGCCTGCCTCTGACAAGAACATCGCCACCGACACGGAGACCA | + |
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Preference number: 6 (lower is better) Translates to: PISCVLRRWLRLLGA*RLPLTRTSPPTRRP Trigger: TGGTCTCCGTGTCGGTGGCGATGTTCTTGTCAGAGGCAGGCGCAAGGCCCCGAGCAGGCGAAGCCAGCGCCTCAGAACGCAGGAAATGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221929.2 |
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| CDS CAA 90 bp | CTCTTTACGGCACTCAAAAACCCCTCAAGTGAAACACCAGAAGTGTaGGGATTTACTGAAGACATCACAGCATCCGCTTCTATCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LFTALKNPSSETPEV*GFTEDITASASILE Trigger: CTCCAAGATAGAAGCGGATGCTGTGATGTCTTCAGTAAATCCCAACACTTCTGGTGTTTCACTTGAGGGGTTTTTGAGTGCCGTAAAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000046485.5 ENSMUST00000221929.2 ENSMUST00000223114.2 |
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