Pregenerated sensors for EEF1B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025967Ensembl transcript IDs: ENSMUST00000027108.13, ENSMUST00000126795.3, ENSMUST00000129339.8, ENSMUST00000135877.8, ENSMUST00000142062.8, ENSMUST00000174890.9
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTTCCTTTCAGGACACTTCCAAAAACTCTTATGTACAGGTGTTGTaGTCGTGGCCATCAGAGCACCTTCTAGAGTTTCGCTCTTACTCT | + |
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Preference number: 1 (lower is better) Translates to: CSFQDTSKNSYVQVL*SWPSEHLLEFRSYS Trigger: AGAGTAAGAGCGAAACTCTAGAAGGTGCTCTGATGGCCACGAGCACAACACCTGTACATAAGAGTTTTTGGAAGTGTCCTGAAAGGAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR TCA 90 bp | TCCATCTCTAGGTTGAGTTCTGAAAACCCACACTTGACCACCTTATaGGCCTACAATGTTCCTTTCAGGACACTTCCAAAAACTCTTATG | + |
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Preference number: 1 (lower is better) Translates to: SISRLSSENPHLTTL*AYNVPFRTLPKTLM Trigger: CATAAGAGTTTTTGGAAGTGTCCTGAAAGGAACATTGTAGGCTCATAAGGTGGTCAAGTGTGGGTTTTCAGAACTCAACCTAGAGATGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR TCA 90 bp | CTATTTCTCTTTCCAGTTCAAGTTTTCGCCACTAATGAGTTACACTaGATCCTTTCCTTCAAAATGAAGACATACCATTTCACAGCAAAA | + |
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Preference number: 1 (lower is better) Translates to: LFLFPVQVFATNELH*ILSFKMKTYHFTAK Trigger: TTTTGCTGTGAAATGGTATGTCTTCATTTTGAAGGAAAGGATTCAGTGTAACTCATTAGTGGCGAAAACTTGAACTGGAAAGAGAAATAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR-3UTR TCA 90 bp | GGAAGACTTCGCAACAACTGCAGGCTTTTTAGCTTTCTTGGACTCATACTGTGCCACTCCCGGCAGGCTTaGAAACAAACATTCTGGCCT | + |
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Preference number: 2 (lower is better) Translates to: GRLRNNCRLFSFLGLILCHSRQA*KQTFWP Trigger: AGGCCAGAATGTTTGTTTTCAAGCCTGCCGGGAGTG...GCACAGTATGAGTCCAAGAAAGCTAAAAAGCCTGCAGTTGTTGCGAAGTCTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027108.13 |
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| 3UTR-3UTR GCA 90 bp | CTGGGATTTGAACTCACAACCTTCAGAAGAGCAGTTGGTGTTCTTAACCATCTCTATGTACAGGTGTTGTaGTCGTGGCCATCAGAGCAC | + |
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Preference number: 2 (lower is better) Translates to: LGFELTTFRRAVGVLNHLYVQVL*SWPSEH Trigger: GTGCTCTGATGGCCACGAGCACAACACCTGTACATA...GAGATGGTTAAGAACACCAACTGCTCTTCTGAAGGTTGTGAGTTCAAATCCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CAA 90 bp | CAATGTTCCTTTCAGGACACTTCCAAAAACTCTTATGTACAGGTGTaGTGCTCGTGGCCATCAGAGCACCTTCTAGAGTTTCGCTCTTAC | + |
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Preference number: 2 (lower is better) Translates to: QCSFQDTSKNSYVQV*CSWPSEHLLEFRSY Trigger: GTAAGAGCGAAACTCTAGAAGGTGCTCTGATGGCCACGAGCACAACACCTGTACATAAGAGTTTTTGGAAGTGTCCTGAAAGGAACATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR-3UTR TCA 90 bp | GAGATTTCATTAAGTATGCTCACTTCCATTCTTAGTGAACTGGAATCCACTTCCGAGGTGTGGGAAAGGTaGACTGCGGTTGTCCATGTT | + |
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Preference number: 2 (lower is better) Translates to: EISLSMLTSILSELESTSEVWER*TAVVHV Trigger: AACATGGACAACCGCAGTTCACCTTTCCCACACCTC...GGAAGTGGATTCCAGTTCACTAAGAATGGAAGTGAGCATACTTAATGAAATCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174890.9 |
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| 3UTR-3UTR CCA 90 bp | TGCTCACTTCCATTCTTAGTGAACTGGAATCCACTTCCCCAAACTTCCACCCTTCCATTCTTAGTGAACTaGAATCCACTTCCCCAAACT | + |
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Preference number: 2 (lower is better) Translates to: CSLPFLVNWNPLPQTSTLPFLVN*NPLPQT Trigger: AGTTTGGGGAAGTGGATTCCAGTTCACTAAGAATGG...AAGGGTGGAAGTTTGGGGAAGTGGATTCCAGTTCACTAAGAATGGAAGTGAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000126795.3 ENSMUST00000174890.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGGATTTGAACTCACAACCTTCAGAAGAGCAGTTGGTGTTCTTAACCATCTCTGGTACACACAGTGTTaGCTAAAAGACAACTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: LGFELTTFRRAVGVLNHLWYTQC*LKDNFR Trigger: CCTGAAGTTGTCTTTTAGCCAACACTGTGTGTACCA...GAGATGGTTAAGAACACCAACTGCTCTTCTGAAGGTTGTGAGTTCAAATCCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CAA 90 bp | GCACAATCCCAGGCAAATAACTTTACTCTTCACCCATGGGAGACATaGTATTCAGTACTCACTACGGCTTACTCTTTCAGAATGAACATC | + |
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Preference number: 2 (lower is better) Translates to: AQSQANNFTLHPWET*YSVLTTAYSFRMNI Trigger: GATGTTCATTCTGAAAGAGTAAGCCGTAGTGAGTACTGAATACAATGTCTCCCATGGGTGAAGAGTAAAGTTATTTGCCTGGGATTGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| 3UTR-3UTR CCA 90 bp | ACAATGTTCCTTTCAGGACACTTCCAAAAACTCTTATGTACAGGTGTTGTGCTCGGTCATCAAGCTGAGTaGTTTAAAAATGCTGAGCTA | + |
|
Preference number: 2 (lower is better) Translates to: TMFLSGHFQKLLCTGVVLGHQAE*FKNAEL Trigger: TAGCTCAGCATTTTTAAACCACTCAGCTTGATGACC...GAGCACAACACCTGTACATAAGAGTTTTTGGAAGTGTCCTGAAAGGAACATTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR-3UTR CCA 90 bp | TCGAAGGCATCTAGTGACAGTTTATCAATAGTATCATGTACTGCTAACAGCAAAAAGACAACTTCAGGTTaGTCTGGTCATCAAGCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: SKASSDSLSIVSCTANSKKTTSG*SGHQAE Trigger: CTCAGCTTGATGACCAGACCAACCTGAAGTTGTCTT...TTTGCTGTTAGCAGTACATGATACTATTGATAAACTGTCACTAGATGCCTTCGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CAA 90 bp | CAGTTCTTTATCTTCCTTTTAATTATATCTATGGTACACACAGTGTaGGCTAAAAGACAACTTCAGGTTGGTCTGGTCATCAAGCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: QFFIFLLIISMVHTV*AKRQLQVGLVIKLS Trigger: ACTCAGCTTGATGACCAGACCAACCTGAAGTTGTCTTTTAGCCAACACTGTGTGTACCATAGATATAATTAAAAGGAAGATAAAGAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR-3UTR TCA 90 bp | TCGAAGGCATCTAGTGACAGTTTATCAATAGTATCATGTACTGCTAACAGCAAACATTTCACAGCAAAATaGAGAGCCAAGGGTTATCTT | + |
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Preference number: 2 (lower is better) Translates to: SKASSDSLSIVSCTANSKHFTAK*RAKGYL Trigger: AAGATAACCCTTGGCTCTTCATTTTGCTGTGAAATG...TTTGCTGTTAGCAGTACATGATACTATTGATAAACTGTCACTAGATGCCTTCGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR TCA 72 bp | TTGCTGGTAGTTTCAGAAGAATGGCCAGGGACCGAATaGGCGAGCTACCCTCACACCCCAGCGGTGGCCCCC | + |
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Preference number: 3 (lower is better) Translates to: LLVVSEEWPGTE*ASYPHTPAVAP Trigger: GGGGGCCACCGCTGGGGTGTGAGGGTAGCTCGCTCATTCGGTCCCTGGCCATTCTTCTGAAACTACCAGCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174890.9 |
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| 3UTR-3UTR CAA 90 bp | ACTTCCACCCTTGCTGGTAGTTTCAGAAGAATGGCCAGGGACCGAATGAGCGAGCCCAAACTTCCACCCTaGCTGGTAGTTTCAGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: TSTLAGSFRRMARDRMSEPKLPP*LVVSEE Trigger: TTCTTCTGAAACTACCAGCAAGGGTGGAAGTTTGGG...CTCGCTCATTCGGTCCCTGGCCATTCTTCTGAAACTACCAGCAAGGGTGGAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000126795.3 ENSMUST00000174890.9 |
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| 3UTR GCA 72 bp | GATCCCATTACAGATGGTTGTGAGCCACCATGCGGTTaGTGGGATTTGAACTCACAACCTTCAGAAGAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: DPITDGCEPPCG*WDLNSQPSEEQ Trigger: CTGCTCTTCTGAAGGTTGTGAGTTCAAATCCCAGCAACCGCATGGTGGCTCACAACCATCTGTAATGGGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CCA 72 bp | CCCATTACAGATGGTTGTGAGCCACCATGCGGTTGCTaGGATTTGAACTCACAACCTTCAGAAGAGCAGTTG | + |
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Preference number: 3 (lower is better) Translates to: PITDGCEPPCGC*DLNSQPSEEQL Trigger: CAACTGCTCTTCTGAAGGTTGTGAGTTCAAATCCCAGCAACCGCATGGTGGCTCACAACCATCTGTAATGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR-3UTR CAA 90 bp | GGAAGACTTCGCAACAACTGCAGGCTTTTTAGCTTTCTTGGACTCATACTGTGCTCACTCCCGGCAGGCTaGAAAACAAACATTCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: GRLRNNCRLFSFLGLILCSLPAG*KTNILA Trigger: GGCCAGAATGTTTGTTTTCAAGCCTGCCGGGAGTGA...GCACAGTATGAGTCCAAGAAAGCTAAAAAGCCTGCAGTTGTTGCGAAGTCTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027108.13 |
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| 3UTR GCA 72 bp | CAGGACACTTCCAAAAACTCTTATGTACAGGTGTTGTaGTCGTGGCCATCAGAGCACCTTCTAGAGTTTCGC | + |
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Preference number: 3 (lower is better) Translates to: QDTSKNSYVQVL*SWPSEHLLEFR Trigger: GCGAAACTCTAGAAGGTGCTCTGATGGCCACGAGCACAACACCTGTACATAAGAGTTTTTGGAAGTGTCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR GCA 72 bp | GTGTCAGATCCCATTACAGATGGTTGTGAGCCACCATaGGGTTGCTGGGATTTGAACTCACAACCTTCAGAA | + |
|
Preference number: 3 (lower is better) Translates to: VSDPITDGCEPP*GCWDLNSQPSE Trigger: TTCTGAAGGTTGTGAGTTCAAATCCCAGCAACCGCATGGTGGCTCACAACCATCTGTAATGGGATCTGACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR-3UTR CAA 90 bp | TCACCCATGGGAGACATTGTATTCAGTACTCACTACGGCTTACTCTTTCAGAATCCCAAACTTCCACCCTaGCTGGTAGTTTCAGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: SPMGDIVFSTHYGLLFQNPKLPP*LVVSEE Trigger: TTCTTCTGAAACTACCAGCAAGGGTGGAAGTTTGGG...ATTCTGAAAGAGTAAGCCGTAGTGAGTACTGAATACAATGTCTCCCATGGGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| 3UTR CCA 72 bp | GCACAATCCCAGGCAAATAACTTTACTCTTCACCCATaGGAGACATTGTATTCAGTACTCACTACGGCTTAC | + |
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Preference number: 3 (lower is better) Translates to: AQSQANNFTLHP*ETLYSVLTTAY Trigger: GTAAGCCGTAGTGAGTACTGAATACAATGTCTCCCATGGGTGAAGAGTAAAGTTATTTGCCTGGGATTGTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| 3UTR TCA 72 bp | AGGTTGAGTTCTGAAAACCCACACTTGACCACCTTATaGGCCTACAATGTTCCTTTCAGGACACTTCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: RLSSENPHLTTL*AYNVPFRTLPK Trigger: TTTTGGAAGTGTCCTGAAAGGAACATTGTAGGCTCATAAGGTGGTCAAGTGTGGGTTTTCAGAACTCAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR TCA 72 bp | TTTCCAGTTCAAGTTTTCGCCACTAATGAGTTACACTaGATCCTTTCCTTCAAAATGAAGACATACCATTTC | + |
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Preference number: 3 (lower is better) Translates to: FPVQVFATNELH*ILSFKMKTYHF Trigger: GAAATGGTATGTCTTCATTTTGAAGGAAAGGATTCAGTGTAACTCATTAGTGGCGAAAACTTGAACTGGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CAA 72 bp | AGCATAACCTCCCACAAGTGTCTCCAAGGAATAGCTTaGCGCATACTGCCTCCCCCAGCACTTCCCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: SITSHKCLQGIA*RILPPPALPSI Trigger: GATGGAGGGAAGTGCTGGGGGAGGCAGTATGCGCAAAGCTATTCCTTGGAGACACTTGTGGGAGGTTATGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS-3UTR CCA 90 bp | TGGAATCCACTTCCCCAAACTTCCACCCTTGCTGGTAGTTTCAGAAGAATGGCCACACAGGTCAGCAGGTaGTGGACCAGAAACTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: WNPLPQTSTLAGSFRRMATQVSR*WTRNCF Trigger: GAAGCAGTTTCTGGTCCACCACCTGCTGACCTGTGT...GGCCATTCTTCTGAAACTACCAGCAAGGGTGGAAGTTTGGGGAAGTGGATTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000126795.3 ENSMUST00000174890.9 |
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| CDS-3UTR CCA 90 bp | AATCCACTTCCCCAAACTTCCACCCTTGCTGGTAGTTTCAGAAGAATGGCCAGGACACAGGTCAGCAGGTaGTGGACCAGAAACTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: NPLPQTSTLAGSFRRMARTQVSR*WTRNCF Trigger: GAAGCAGTTTCTGGTCCACCACCTGCTGACCTGTGT...CCTGGCCATTCTTCTGAAACTACCAGCAAGGGTGGAAGTTTGGGGAAGTGGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000126795.3 ENSMUST00000174890.9 |
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| CDS-3UTR TCA 90 bp | GAAGACTTCGCAACAACTGCAGGCTTTTTAGCTTTCTTGGACTCATACTGTGCATGCCACGTCTGCTTGTaGTGGCACGTACCTGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: EDFATTAGFLAFLDSYCACHVCL*WHVPAS Trigger: ACTGGCAGGTACGTGCCATCACAAGCAGACGTGGCA...TGCACAGTATGAGTCCAAGAAAGCTAAAAAGCCTGCAGTTGTTGCGAAGTCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027108.13 ENSMUST00000135877.8 |
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| CDS-3UTR CCA 90 bp | AGACTTCGCAACAACTGCAGGCTTTTTAGCTTTCTTGGACTCATACTGTGCAAGACAAGTGCACAGACCTaGAGGCCGGCAGGGGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: RLRNNCRLFSFLGLILCKTSAQT*RPAGVF Trigger: GAAAACCCCTGCCGGCCTCCAGGTCTGTGCACTTGT...CTTGCACAGTATGAGTCCAAGAAAGCTAAAAAGCCTGCAGTTGTTGCGAAGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135877.8 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCACCATGCGGTTGCTGGGATTaGAACTCACAACCTTCAGAAGAGCAGTTGGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWD*NSQPSEEQLVF Trigger: GAACACCAACTGCTCTTCTGAAGGTTGTGAGTTCAAATCCCAGCAACCGCATGGTGGCTCACAACCATCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS-3UTR CCA 90 bp | GGAAGACTTCGCAACAACTGCAGGCTTTTTAGCTTTCTTGGACTCATACTGTGCACACAGGTCAGCAGGTaGTGGACCAGAAACTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: GRLRNNCRLFSFLGLILCTQVSR*WTRNCF Trigger: GAAGCAGTTTCTGGTCCACCACCTGCTGACCTGTGT...GCACAGTATGAGTCCAAGAAAGCTAAAAAGCCTGCAGTTGTTGCGAAGTCTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135877.8 |
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| CDS-3UTR CCA 90 bp | GTACAGGTGTTGTGCTCGTGGCCATCAGAGCACCTTCTAGAGTTTCGCTCTTACAATTCCATATCCCACTaGAACCAATTTAGAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: VQVLCSWPSEHLLEFRSYNSISH*NQFRGA Trigger: GGCTCCTCTAAATTGGTTCCAGTGGGATATGGAATT...GTAAGAGCGAAACTCTAGAAGGTGCTCTGATGGCCACGAGCACAACACCTGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS-3UTR TCA 90 bp | CACATTAGGTCAGTGTCAAAGCCCTTTCTAGGCAAAACACACAATCTTCCTTTCGAGGTGTGGGAAAGGTaGACTGCGGTTGTCCATGTT | + |
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Preference number: 4 (lower is better) Translates to: HIRSVSKPFLGKTHNLPFEVWER*TAVVHV Trigger: AACATGGACAACCGCAGTTCACCTTTCCCACACCTC...GAAAGGAAGATTGTGTGTTTTGCCTAGAAAGGGCTTTGACACTGACCTAATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| CDS-3UTR TCA 90 bp | ACAATGTTCCTTTCAGGACACTTCCAAAAACTCTTATGTACAGGTGTTGTGCTCACCAGGCCATCTGCTTaGATGCTTCGGACACACTCC | + |
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Preference number: 4 (lower is better) Translates to: TMFLSGHFQKLLCTGVVLTRPSA*MLRTHS Trigger: GGAGTGTGTCCGAAGCATTCAAGCAGATGGCCTGGT...GAGCACAACACCTGTACATAAGAGTTTTTGGAAGTGTCCTGAAAGGAACATTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CAA 72 bp | GAAGACTTCGCAACAACTGCAGGCTTTTTAGCTTTCTaGGACTCATACTGTGCAAGGCGTTCTTCTCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: EDFATTAGFLAF*DSYCARRSSRS Trigger: GCTACGAGAAGAACGCCTTGCACAGTATGAGTCCAAGAAAGCTAAAAAGCCTGCAGTTGTTGCGAAGTCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027108.13 ENSMUST00000135877.8 ENSMUST00000142062.8 |
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| CDS-3UTR GCA 90 bp | CACATTAGGTCAGTGTCAAAGCCCTTTCTAGGCAAAACACACAATCTTCCTTTCGTGGGAAAGGTGAACTaGGGTTGTCCATGTTCTACC | + |
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Preference number: 4 (lower is better) Translates to: HIRSVSKPFLGKTHNLPFVGKVN*GCPCST Trigger: GGTAGAACATGGACAACCGCAGTTCACCTTTCCCAC...GAAAGGAAGATTGTGTGTTTTGCCTAGAAAGGGCTTTGACACTGACCTAATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| CDS-3UTR CCA 90 bp | CAGCCCAAGATTCAGTTTTTCAGAAAGACATCGAAGGCATCTAGTGACAGTTTAACACAGGTCAGCAGGTaGTGGACCAGAAACTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: QPKIQFFRKTSKASSDSLTQVSR*WTRNCF Trigger: GAAGCAGTTTCTGGTCCACCACCTGCTGACCTGTGT...TAAACTGTCACTAGATGCCTTCGATGTCTTTCTGAAAAACTGAATCTTGGGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CAA 72 bp | TTTCAGGACACTTCCAAAAACTCTTATGTACAGGTGTaGTGCTCGTGGCCATCAGAGCACCTTCTAGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: FQDTSKNSYVQV*CSWPSEHLLEF Trigger: AAACTCTAGAAGGTGCTCTGATGGCCACGAGCACAACACCTGTACATAAGAGTTTTTGGAAGTGTCCTGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS-3UTR GCA 90 bp | TCGAAGGCATCTAGTGACAGTTTATCAATAGTATCATGTACTGCTAACAGCAAACCACACCAGGCCATCTaGTTGAATGCTTCGGACACA | + |
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Preference number: 4 (lower is better) Translates to: SKASSDSLSIVSCTANSKPHQAI*LNASDT Trigger: TGTGTCCGAAGCATTCAAGCAGATGGCCTGGTGTGG...TTTGCTGTTAGCAGTACATGATACTATTGATAAACTGTCACTAGATGCCTTCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS-3UTR GCA 90 bp | TCGAAGGCATCTAGTGACAGTTTATCAATAGTATCATGTACTGCTAACAGCAAAAGACTTCGCAACAACTaGAGGCTTTTTAGCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SKASSDSLSIVSCTANSKRLRNN*RLFSFL Trigger: AAGAAAGCTAAAAAGCCTGCAGTTGTTGCGAAGTCT...TTTGCTGTTAGCAGTACATGATACTATTGATAAACTGTCACTAGATGCCTTCGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| 3UTR CAA 72 bp | ATCTTCCTTTTAATTATATCTATGGTACACACAGTGTaGGCTAAAAGACAACTTCAGGTTGGTCTGGTCATC | + |
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Preference number: 4 (lower is better) Translates to: IFLLIISMVHTV*AKRQLQVGLVI Trigger: GATGACCAGACCAACCTGAAGTTGTCTTTTAGCCAACACTGTGTGTACCATAGATATAATTAAAAGGAAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS-3UTR CCA 90 bp | AGTACTCACTACGGCTTACTCTTTCAGAATGAACATCTGTTTGAGATTTCATTAATGTTCTACCTGTTCTaGCCTTTTCTTTTTCATACG | + |
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Preference number: 4 (lower is better) Translates to: STHYGLLFQNEHLFEISLMFYLF*PFLFHT Trigger: CGTATGAAAAAGAAAAGGCCAGAACAGGTAGAACAT...TAATGAAATCTCAAACAGATGTTCATTCTGAAAGAGTAAGCCGTAGTGAGTACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| CDS GCA 90 bp | CCCAGGTCCAAAGCACATGATCAGAGAGGTGTGGGAAAGGTGAACTaGGGTTGTCCATGTTCTACCTGTTCTGGCCTTTTCTTTTTCATA | + |
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Preference number: 5 (lower is better) Translates to: PRSKAHDQRGVGKVN*GCPCSTCSGLFFFI Trigger: TATGAAAAAGAAAAGGCCAGAACAGGTAGAACATGGACAACCGCAGTTCACCTTTCCCACACCTCTCTGATCATGTGCTTTGGACCTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| CDS-3UTR CAA 90 bp | CCCTTTCTAGGCAAAACACACAATCTTCCTTTCCCAGGAACTCCCACTCTCTTCAAAGGTGAACTGCGGTaGTCCATGTTCTACCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: PFLGKTHNLPFPGTPTLFKGELR*SMFYLF Trigger: GAACAGGTAGAACATGGACAACCGCAGTTCACCTTT...GAAGAGAGTGGGAGTTCCTGGGAAAGGAAGATTGTGTGTTTTGCCTAGAAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| CDS-3UTR CAA 90 bp | GTTTCGCTCTTACTCTATGGAGTGAACCAAACAGTAAGCAACCTCAGTGGCTATGGCTTTTTAGCTTTCTaGGACTCATACTGTGCAAGG | + |
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Preference number: 5 (lower is better) Translates to: VSLLLYGVNQTVSNLSGYGFLAF*DSYCAR Trigger: CCTTGCACAGTATGAGTCCAAGAAAGCTAAAAAGCC...ATAGCCACTGAGGTTGCTTACTGTTTGGTTCACTCCATAGAGTAAGAGCGAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS-3UTR CAA 90 bp | TCTTTCCAGTTCAAGTTTTCGCCACTAATGAGTTACACTGAATCCTTTCCTTCACACACTCCTCTAGTTTaGTCATGTCCGTCTCATCAT | + |
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Preference number: 5 (lower is better) Translates to: SFQFKFSPLMSYTESFPSHTPLV*SCPSHH Trigger: ATGATGAGACGGACATGACAAAACTAGAGGAGTGTG...TGAAGGAAAGGATTCAGTGTAACTCATTAGTGGCGAAAACTTGAACTGGAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129339.8 |
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| CDS TCA 72 bp | GGTCCAAAGCACATGATCAGAGAGGTGTGGGAAAGGTaGACTGCGGTTGTCCATGTTCTACCTGTTCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: GPKHMIREVWER*TAVVHVLPVLA Trigger: GGCCAGAACAGGTAGAACATGGACAACCGCAGTTCACCTTTCCCACACCTCTCTGATCATGTGCTTTGGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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| CDS GCA 72 bp | AAAGCACATGATCAGAGAGGTGTGGGAAAGGTGAACTaGGGTTGTCCATGTTCTACCTGTTCTGGCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: KAHDQRGVGKVN*GCPCSTCSGLF Trigger: GAAAAGGCCAGAACAGGTAGAACATGGACAACCGCAGTTCACCTTTCCCACACCTCTCTGATCATGTGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126795.3 |
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