Pregenerated sensors for EED (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030619Ensembl transcript IDs: ENSMUST00000207980.2, ENSMUST00000238792.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GGTTTGTCGAATAGCCGCGCCACATTTATGATGGGTCAGTGTTGTGCATTTGGCTACAGTTTGCCAACCTaGTTGCCCAATGCAAGCATT | + |
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Preference number: 4 (lower is better) Translates to: GLSNSRATFMMGQCCAFGYSLPT*LPNASI Trigger: AATGCTTGCATTGGGCAATCAGGTTGGCAAACTGTA...GCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS-3UTR GCA 90 bp | GGTTTGTCGAATAGCCGCGCCACATTTATGATGGGTCAGTGTTGTGCATTTGGCGTTTGCCAACCTGATTaGCCAATGCAAGCATTAGGT | + |
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Preference number: 4 (lower is better) Translates to: GLSNSRATFMMGQCCAFGVCQPD*PMQALG Trigger: ACCTAATGCTTGCATTGGGCAATCAGGTTGGCAAAC...GCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS-3UTR TCA 90 bp | GGTTTGTCGAATAGCCGCGCCACATTTATGATGGGTCAGTGTTGTGCATTTGGCCACAGTTTAAGAGAGTaGTCCATACCACAGGACATT | + |
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Preference number: 4 (lower is better) Translates to: GLSNSRATFMMGQCCAFGHSLRE*SIPQDI Trigger: AATGTCCTGTGGTATGGATCACTCTCTTAAACTGTG...GCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS-3UTR GCA 90 bp | GGTTTGTCGAATAGCCGCGCCACATTTATGATGGGTCAGTGTTGTGCATTTGGCTATCATCCTCCATTTTaGCAGGTTTCCAGCATACAA | + |
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Preference number: 4 (lower is better) Translates to: GLSNSRATFMMGQCCAFGYHPPF*QVSSIQ Trigger: TTGTATGCTGGAAACCTGGCAAAATGGAGGATGATA...GCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS-3UTR TCA 90 bp | GGTTTGTCGAATAGCCGCGCCACATTTATGATGGGTCAGTGTTGTGCATTTGGCATTCATCATCCTCTTTaGGTTGATTCTCCACAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: GLSNSRATFMMGQCCAFGIHHPL*VDSPQF Trigger: AAACTGTGGAGAATCAACTCAAAGAGGATGATGAAT...GCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS-3UTR CCA 90 bp | GGTTTGTCGAATAGCCGCGCCACATTTATGATGGGTCAGTGTTGTGCATTTGGCTTTCTGGGAAATAAATaGCCTGTTAGTTTTGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: GLSNSRATFMMGQCCAFGFLGNK*PVSFVW Trigger: CCAAACAAAACTAACAGGCCATTTATTTCCCAGAAA...GCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS-3UTR CAA 90 bp | GGTTTGTCGAATAGCCGCGCCACATTTATGATGGGTCAGTGTTGTGCATTTGGCGCATTTTCACAAGACTaGGAAAGTATCAAATCGCCT | + |
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Preference number: 5 (lower is better) Translates to: GLSNSRATFMMGQCCAFGAFSQD*ESIKSP Trigger: AGGCGATTTGATACTTTCCAAGTCTTGTGAAAATGC...GCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS GCA 72 bp | CTCTCGGACATGTTCCTCCGCCTCCCTCCAGGTTCTTaGCGCCTCGGGCGGGGCCTCCGCCACACCGCCGTC | + |
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Preference number: 6 (lower is better) Translates to: LSDMFLRLPPGS*RLGRGLRHTAV Trigger: GACGGCGGTGTGGCGGAGGCCCCGCCCGAGGCGGCAAGAACCTGGAGGGAGGCGGAGGAACATGTCCGAGAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238792.2 |
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| CDS TCA 72 bp | TCTACTTCTAAATCCCAAACATACAGTTTGCCAACCTaGTTGCCCAATGCAAGCATTAGGTTTAATTTTATC | + |
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Preference number: 6 (lower is better) Translates to: STSKSQTYSLPT*LPNASIRFNFI Trigger: GATAAAATTAAACCTAATGCTTGCATTGGGCAATCAGGTTGGCAAACTGTATGTTTGGGATTTAGAAGTAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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| CDS GCA 72 bp | CTTCTAAATCCCAAACATACAGTTTGCCAACCTGATTaGCCAATGCAAGCATTAGGTTTAATTTTATCTATA | + |
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Preference number: 6 (lower is better) Translates to: LLNPKHTVCQPD*PMQALGLILSI Trigger: TATAGATAAAATTAAACCTAATGCTTGCATTGGGCAATCAGGTTGGCAAACTGTATGTTTGGGATTTAGAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207980.2 |
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