Pregenerated sensors for EDN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021367Ensembl transcript IDs: ENSMUST00000021796.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTCTGAGTGATGCCACTCTAGAATGGCATCGTGTCTCTGCTCTCTaGGAAGTCCTCTGTCATTCCCAACCGGCAAGAAGAGGCAGAAAG | + |
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Preference number: 1 (lower is better) Translates to: SLSDATLEWHRVSAL*EVLCHSQPARRGRK Trigger: CTTTCTGCCTCTTCTTGCCGGTTGGGAATGACAGAGGACTTCTCAGAGAGCAGAGACACGATGCCATTCTAGAGTGGCATCACTCAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR TCA 90 bp | AGAATGTGTATGACAGTGCAGAAAGGTGAGGTAGACTCATATTCATaGAATACATCCCAATGTACAGTAGTAACAGTTGCTTTGAGTTTT | + |
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Preference number: 1 (lower is better) Translates to: RMCMTVQKGEVDSYS*NTSQCTVVTVALSF Trigger: AAAACTCAAAGCAACTGTTACTACTGTACATTGGGATGTATTTCATGAATATGAGTCTACCTCACCTTTCTGCACTGTCATACACATTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR TCA 90 bp | AACCGGCAAGAAGAGGCAGAAAGGCACTCGCTCCCAGCGGACGCAGACAGGCTAGCACTATATAAGGGATaGCTTCCAAAACACTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: NRQEEAERHSLPADADRLALYKG*LPKHWG Trigger: CCCCCAGTGTTTTGGAAGTCATCCCTTATATAGTGC...TAGCCTGTCTGCGTCCGCTGGGAGCGAGTGCCTTTCTGCCTCTTCTTGCCGGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR GCA 90 bp | TTTCTACAGAAACCCCGCCCTGCTGTGGAATCTCCTGGCTCTCTGAGTGATGCCATGGCATCGTGTCTCTaGTCTCTGAGAAGTCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: FLQKPRPAVESPGSLSDAMASCL*SLRSPL Trigger: CAGAGGACTTCTCAGAGAGCAGAGACACGATGCCAT...GGCATCACTCAGAGAGCCAGGAGATTCCACAGCAGGGCGGGGTTTCTGTAGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR GCA 90 bp | TCAGAAAAATTTTTGCATGGACTTTGGAGTTTCTCCCTGAAATGTGCCAGGCGCAGCCAGCATGGAGAGTaGAGAGCTGGCCATGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: SEKFLHGLWSFSLKCARRSQHGE*RAGHGA Trigger: AGCCCCATGGCCAGCTCTGCACTCTCCATGCTGGCT...GCGCCTGGCACATTTCAGGGAGAAACTCCAAAGTCCATGCAAAAATTTTTCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR CCA 90 bp | TTTCTACAGAAACCCCGCCCTGCTGTGGAATCTCCTGGCTCTCTGAGTGATGCCCTTTCTTGGAATGTTTaGATCAAGGATGCTGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: FLQKPRPAVESPGSLSDALSWNV*IKDAGP Trigger: AGGACCAGCATCCTTGATCCAAACATTCCAAGAAAG...GGCATCACTCAGAGAGCCAGGAGATTCCACAGCAGGGCGGGGTTTCTGTAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR CAA 90 bp | AGCACAGACCAGGTTTTCAACATGTACACAAACAACTCTAAACCATaGTGTTTCCCAAGGTCAAGGGCAGGGGCCAGATTCTGTCATCCT | + |
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Preference number: 2 (lower is better) Translates to: STDQVFNMYTNNSKP*CFPRSRAGARFCHP Trigger: AGGATGACAGAATCTGGCCCCTGCCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGAAAACCTGGTCTGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR CCA 90 bp | TTTTCAACATGTACACAAACAACTCTAAACCATTGTGTTTCCCAAGGTCAAGGGTGGAGAGTGCAGAGCTaGCCATGGGGCTCGCACTAT | + |
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Preference number: 2 (lower is better) Translates to: FSTCTQTTLNHCVSQGQGWRVQS*PWGSHY Trigger: ATAGTGCGAGCCCCATGGCCAGCTCTGCACTCTCCA...CCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR TCA 90 bp | TTTTCAACATGTACACAAACAACTCTAAACCATTGTGTTTCCCAAGGTCAAGGGGGTCCTCTGCCCGTCTaGACAAGAAACTGTAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: FSTCTQTTLNHCVSQGQGGPLPV*TRNCRS Trigger: GCTTCTACAGTTTCTTGTTCAGACGGGCAGAGGACC...CCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR CCA 90 bp | CATTCCTCAGAAAAATTTTTGCATGGACTTTGGAGTTTCTCCCTGAAATGTGCCCACCTCAGCCTTTCTTaGAATGTTTGGATCAAGGAT | + |
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Preference number: 2 (lower is better) Translates to: HSSEKFLHGLWSFSLKCAHLSLS*NVWIKD Trigger: ATCCTTGATCCAAACATTCCAAGAAAGGCTGAGGTG...GGCACATTTCAGGGAGAAACTCCAAAGTCCATGCAAAAATTTTTCTGAGGAATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR CCA 90 bp | GCACAGACCAGGTTTTCAACATGTACACAAACAACTCTAAACCATTGTGTTTCCGCTAGCAGATTAGCATaGCAATGTTTCAGCTACTTC | + |
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Preference number: 2 (lower is better) Translates to: AQTRFSTCTQTTLNHCVSASRLA*QCFSYF Trigger: GAAGTAGCTGAAACATTGCCATGCTAATCTGCTAGC...GGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGAAAACCTGGTCTGTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR TCA 90 bp | TTTTCAACATGTACACAAACAACTCTAAACCATTGTGTTTCCCAAGGTCAAGGGTGTTTCAGCTACTTCTaGCTCAATTTCTGTGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: FSTCTQTTLNHCVSQGQGCFSYF*LNFCEA Trigger: TGCCTCACAGAAATTGAGTCAGAAGTAGCTGAAACA...CCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR TCA 72 bp | AATGTTTGGATCAAGGATGCTGGTCCTCTGCCCGTCTaGACAAGAAACTGTAGAAGCCACACAGATGGTCTT | + |
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Preference number: 3 (lower is better) Translates to: NVWIKDAGPLPV*TRNCRSHTDGL Trigger: AAGACCATCTGTGTGGCTTCTACAGTTTCTTGTTCAGACGGGCAGAGGACCAGCATCCTTGATCCAAACATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR CAA 90 bp | TTACTGCTAAAAAGCACAGACCAGGTTTTCAACATGTACACAAACAACTCTAAAGCCACACAGATGGTCTaGCTAAGATCCCAGCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LLLKSTDQVFNMYTNNSKATQMV*LRSQPA Trigger: TGCTGGCTGGGATCTTAGCAAGACCATCTGTGTGGC...TTTAGAGTTGTTTGTGTACATGTTGAAAACCTGGTCTGTGCTTTTTAGCAGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR-3UTR CAA 90 bp | TCAACATGTACACAAACAACTCTAAACCATTGTGTTTCCCAAGGTCAAGGGCAGACACCTCAGCCTTTCTaGGAATGTTTGGATCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: STCTQTTLNHCVSQGQGQTPQPF*ECLDQG Trigger: TCCTTGATCCAAACATTCCAAGAAAGGCTGAGGTGT...CTGCCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR TCA 72 bp | GCTAGCAGATTAGCATGGCAATGTTTCAGCTACTTCTaGCTCAATTTCTGTGAGGCAAGGATTCAGTATAGG | + |
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Preference number: 3 (lower is better) Translates to: ASRLAWQCFSYF*LNFCEARIQYR Trigger: CCTATACTGAATCCTTGCCTCACAGAAATTGAGTCAGAAGTAGCTGAAACATTGCCATGCTAATCTGCTAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR TCA 72 bp | ATGACAGTGCAGAAAGGTGAGGTAGACTCATATTCATaGAATACATCCCAATGTACAGTAGTAACAGTTGCT | + |
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Preference number: 3 (lower is better) Translates to: MTVQKGEVDSYS*NTSQCTVVTVA Trigger: AGCAACTGTTACTACTGTACATTGGGATGTATTTCATGAATATGAGTCTACCTCACCTTTCTGCACTGTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR TCA 90 bp | CCGGCAAGAAGAGGCAGAAAGGCACTCGCTCCCAGCGGACGCAGACAGGCTAGGTGGTACTTTGGGCCCTaGGTTCTTTTCCTGCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: PARRGRKALAPSGRRQARWYFGP*VLFLLG Trigger: GCCAAGCAGGAAAAGAACTCAGGGCCCAAAGTACCA...CCTAGCCTGTCTGCGTCCGCTGGGAGCGAGTGCCTTTCTGCCTCTTCTTGCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR GCA 90 bp | CCGGCAAGAAGAGGCAGAAAGGCACTCGCTCCCAGCGGACGCAGACAGGCTAGGGCACTGACATCTAACTaGCTGGTCTGTGGCCTTATT | + |
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Preference number: 4 (lower is better) Translates to: PARRGRKALAPSGRRQARALTSN*LVCGLI Trigger: AATAAGGCCACAGACCAGGCAGTTAGATGTCAGTGC...CCTAGCCTGTCTGCGTCCGCTGGGAGCGAGTGCCTTTCTGCCTCTTCTTGCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CCA 90 bp | CCGGCAAGAAGAGGCAGAAAGGCACTCGCTCCCAGCGGACGCAGACAGGCTAGGACTTCTTTCCCAACTTaGAACAGGGTTTTCCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: PARRGRKALAPSGRRQARTSFPT*NRVFLS Trigger: AGAAAGGAAAACCCTGTTCCAAGTTGGGAAAGAAGT...CCTAGCCTGTCTGCGTCCGCTGGGAGCGAGTGCCTTTCTGCCTCTTCTTGCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CCA 90 bp | AACCGGCAAGAAGAGGCAGAAAGGCACTCGCTCCCAGCGGACGCAGACAGGCTAAGTTCTTTTCCTGCTTaGCAGAAATTCCAGCACTTC | + |
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Preference number: 4 (lower is better) Translates to: NRQEEAERHSLPADADRLSSFPA*QKFQHF Trigger: GAAGTGCTGGAATTTCTGCCAAGCAGGAAAAGAACT...TAGCCTGTCTGCGTCCGCTGGGAGCGAGTGCCTTTCTGCCTCTTCTTGCCGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR GCA 90 bp | CTGTCATTCCCAACCGGCAAGAAGAGGCAGAAAGGCACTCGCTCCCAGCGGACGCTCAGCTTTCAACTTTaGAACACGAAAAGATGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LSFPTGKKRQKGTRSQRTLSFQL*NTKRCL Trigger: AAGGCATCTTTTCGTGTTGCAAAGTTGAAAGCTGAG...CGTCCGCTGGGAGCGAGTGCCTTTCTGCCTCTTCTTGCCGGTTGGGAATGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CCA 90 bp | CTCTCTGAGAAGTCCTCTGTCATTCCCAACCGGCAAGAAGAGGCAGAAAGGCACGTTTCTGGAGCTCCTTaGAAAGTCACGAACAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LSEKSSVIPNRQEEAERHVSGAP*KVTNSR Trigger: TCTGCTGTTCGTGACTTTCCAAGGAGCTCCAGAAAC...GTGCCTTTCTGCCTCTTCTTGCCGGTTGGGAATGACAGAGGACTTCTCAGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CCA 90 bp | CTGAAATGTGCCAGGCGCCTGAGTCAGACACGAACACTCCCTAAGGACTTTCTACTTTCAAGGAACGCTTaGACCTGGAAGAACCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LKCARRLSQTRTLPKDFLLSRNA*TWKNLP Trigger: TGGGAGGTTCTTCCAGGTCCAAGCGTTCCTTGAAAG...TAGAAAGTCCTTAGGGAGTGTTCGTGTCTGACTCAGGCGCCTGGCACATTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR GCA 90 bp | CTCTCTGAGAAGTCCTCTGTCATTCCCAACCGGCAAGAAGAGGCAGAAAGGCACCCTGAGTTCTTTTCCTaGTTGGCAGAAATTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LSEKSSVIPNRQEEAERHPEFFS*LAEIPA Trigger: TGCTGGAATTTCTGCCAAGCAGGAAAAGAACTCAGG...GTGCCTTTCTGCCTCTTCTTGCCGGTTGGGAATGACAGAGGACTTCTCAGAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CCA 90 bp | CTCTCTGAGAAGTCCTCTGTCATTCCCAACCGGCAAGAAGAGGCAGAAAGGCACGGTCTGTGGCCTTATTaGGAAGTAAGTCTTTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: LSEKSSVIPNRQEEAERHGLWPY*EVSLSR Trigger: CCTTGAAAGACTTACTTCCCAATAAGGCCACAGACC...GTGCCTTTCTGCCTCTTCTTGCCGGTTGGGAATGACAGAGGACTTCTCAGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR CAA 72 bp | CAGGTTTTCAACATGTACACAAACAACTCTAAACCATaGTGTTTCCCAAGGTCAAGGGCAGGGGCCAGATTC | + |
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Preference number: 4 (lower is better) Translates to: QVFNMYTNNSKP*CFPRSRAGARF Trigger: GAATCTGGCCCCTGCCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGAAAACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| 3UTR CAA 72 bp | ATTTGTGCATTCCTCAGAAAAATTTTTGCATGGACTTaGGAGTTTCTCCCTGAAATGTGCCAGGCGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ICAFLRKIFAWT*EFLPEMCQAPE Trigger: CTCAGGCGCCTGGCACATTTCAGGGAGAAACTCCAAAGTCCATGCAAAAATTTTTCTGAGGAATGCACAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR GCA 90 bp | CATTCCTCAGAAAAATTTTTGCATGGACTTTGGAGTTTCTCCCTGAAATGTGCCCAATGTGCTCGGTTGTaGGTCAACTTCTGGTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: HSSEKFLHGLWSFSLKCAQCARL*VNFWSL Trigger: TAGAGACCAGAAGTTGACGCACAACCGAGCACATTG...GGCACATTTCAGGGAGAAACTCCAAAGTCCATGCAAAAATTTTTCTGAGGAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CAA 90 bp | AACCGGCAAGAAGAGGCAGAAAGGCACTCGCTCCCAGCGGACGCAGACAGGCTATCTTTCAAGGAACGCTaGGACCTGGAAGAACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: NRQEEAERHSLPADADRLSFKER*DLEEPP Trigger: GGGAGGTTCTTCCAGGTCCAAGCGTTCCTTGAAAGA...TAGCCTGTCTGCGTCCGCTGGGAGCGAGTGCCTTTCTGCCTCTTCTTGCCGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CCA 90 bp | CCTGGTCTGTGGCCTTATTGGGAAGTAAGTCTTTCAAGGAACGCTTaGACCTGGAAGAACCTCCCAGTCCATACGGTACGACGCGCTCGG | + |
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Preference number: 5 (lower is better) Translates to: PGLWPYWEVSLSRNA*TWKNLPVHTVRRAR Trigger: CCGAGCGCGTCGTACCGTATGGACTGGGAGGTTCTTCCAGGTCCAAGCGTTCCTTGAAAGACTTACTTCCCAATAAGGCCACAGACCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CCA 90 bp | CTGTGGCCTTATTGGGAAGTAAGTCTTTCAAGGAACGCTTGGACCTaGAAGAACCTCCCAGTCCATACGGTACGACGCGCTCGGGAGTGT | + |
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Preference number: 5 (lower is better) Translates to: LWPYWEVSLSRNAWT*KNLPVHTVRRAREC Trigger: ACACTCCCGAGCGCGTCGTACCGTATGGACTGGGAGGTTCTTCCAGGTCCAAGCGTTCCTTGAAAGACTTACTTCCCAATAAGGCCACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CAA 90 bp | CGGATAGCGGAGAGGAGAGAATACAGGGAGGCAATAATTAAAGGTGAGAATGTGGAACAGGAACAGCGCTaGGACCTGCGGGGTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: RIAERREYREAIIKGENVEQEQR*DLRGLQ Trigger: CTGGAGACCCCGCAGGTCCAAGCGCTGTTCCTGTTC...CACATTCTCACCTTTAATTATTGCCTCCCTGTATTCTCTCCTCTCCGCTATCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS GCA 90 bp | GTTGTGCGTCAACTTCTGGTCTCTATAGAGCTCAGCTTTCAACTTTaGAACACGAAAAGATGCCTTGATGCTATTGCTGATGGCCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: VVRQLLVSIELSFQL*NTKRCLDAIADGLQ Trigger: TTGGAGGCCATCAGCAATAGCATCAAGGCATCTTTTCGTGTTGCAAAGTTGAAAGCTGAGCTCTATAGAGACCAGAAGTTGACGCACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CAA 90 bp | TCAACATGTACACAAACAACTCTAAACCATTGTGTTTCCCAAGGTCAAGGGCAGCACTTCTTTCCCAACTaGGAACAGGGTTTTCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: STCTQTTLNHCVSQGQGQHFFPN*EQGFPF Trigger: GAAAGGAAAACCCTGTTCCAAGTTGGGAAAGAAGTG...CTGCCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CAA 90 bp | TTTTCAACATGTACACAAACAACTCTAAACCATTGTGTTTCCCAAGGTCAAGGGGCACTTCTTGTCTTTTaGGTGAGCGCACTGACATCT | + |
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Preference number: 5 (lower is better) Translates to: FSTCTQTTLNHCVSQGQGALLVF*VSALTS Trigger: AGATGTCAGTGCGCTCACCAAAAAGACAAGAAGTGC...CCCTTGACCTTGGGAAACACAATGGTTTAGAGTTGTTTGTGTACATGTTGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CAA 90 bp | TTTGTGCATTCCTCAGAAAAATTTTTGCATGGACTTTGGAGTTTCTCCCTGAAATTTCTGCATGGTACTTaGGGCCCTGAGTTCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: FVHSSEKFLHGLWSFSLKFLHGT*GPEFFS Trigger: GGAAAAGAACTCAGGGCCCAAAGTACCATGCAGAAA...TTTCAGGGAGAAACTCCAAAGTCCATGCAAAAATTTTTCTGAGGAATGCACAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS-3UTR CAA 90 bp | TTACTGCTAAAAAGCACAGACCAGGTTTTCAACATGTACACAAACAACTCTAAAGCTCAGCTTTCAACTTaGCAACACGAAAAGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: LLLKSTDQVFNMYTNNSKAQLST*QHEKMP Trigger: AGGCATCTTTTCGTGTTGCAAAGTTGAAAGCTGAGC...TTTAGAGTTGTTTGTGTACATGTTGAAAACCTGGTCTGTGCTTTTTAGCAGTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CAA 90 bp | GCCTGGTCTGTGGCCTTATTGGGAAGTAAGTCTTTCAAGGAACGCTaGGACCTGGAAGAACCTCCCAGTCCATACGGTACGACGCGCTCG | + |
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Preference number: 6 (lower is better) Translates to: AWSVALLGSKSFKER*DLEEPPSPYGTTRS Trigger: CGAGCGCGTCGTACCGTATGGACTGGGAGGTTCTTCCAGGTCCAAGCGTTCCTTGAAAGACTTACTTCCCAATAAGGCCACAGACCAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CAA 72 bp | GAGTTCGGCTCCCAAGACAGCTGTTTCTGGAGCTCCTaGGAAAGTCACGAACAGCAGAGAGAAGATCACGGG | + |
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Preference number: 6 (lower is better) Translates to: EFGSQDSCFWSS*ESHEQQREDHG Trigger: CCCGTGATCTTCTCTCTGCTGTTCGTGACTTTCCAAGGAGCTCCAGAAACAGCTGTCTTGGGAGCCGAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CCA 72 bp | AGTTCGGCTCCCAAGACAGCTGTTTCTGGAGCTCCTTaGAAAGTCACGAACAGCAGAGAGAAGATCACGGGA | + |
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Preference number: 6 (lower is better) Translates to: SSAPKTAVSGAP*KVTNSREKITG Trigger: TCCCGTGATCTTCTCTCTGCTGTTCGTGACTTTCCAAGGAGCTCCAGAAACAGCTGTCTTGGGAGCCGAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CAA 90 bp | TCCGGTGCTGAGTTCGGCTCCCAAGACAGCTGTTTCTGGAGCTCCTaGGAAAGTCACGAACAGCAGAGAGAAGATCACGGGAAAATAATC | + |
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Preference number: 6 (lower is better) Translates to: SGAEFGSQDSCFWSS*ESHEQQREDHGKII Trigger: GATTATTTTCCCGTGATCTTCTCTCTGCTGTTCGTGACTTTCCAAGGAGCTCCAGAAACAGCTGTCTTGGGAGCCGAACTCAGCACCGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CCA 72 bp | TATTGGGAAGTAAGTCTTTCAAGGAACGCTTGGACCTaGAAGAACCTCCCAGTCCATACGGTACGACGCGCT | + |
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Preference number: 6 (lower is better) Translates to: YWEVSLSRNAWT*KNLPVHTVRRA Trigger: AGCGCGTCGTACCGTATGGACTGGGAGGTTCTTCCAGGTCCAAGCGTTCCTTGAAAGACTTACTTCCCAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CAA 72 bp | TCCTGCTTGGCAGAAATTCCAGCACTTCTTGTCTTTTaGGTGAGCGCACTGACATCTAACTGCCTGGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: SCLAEIPALLVF*VSALTSNCLVC Trigger: ACAGACCAGGCAGTTAGATGTCAGTGCGCTCACCAAAAAGACAAGAAGTGCTGGAATTTCTGCCAAGCAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS CAA 90 bp | GAGTTCTTTTCCTGCTTGGCAGAAATTCCAGCACTTCTTGTCTTTTaGGTGAGCGCACTGACATCTAACTGCCTGGTCTGTGGCCTTATT | + |
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Preference number: 6 (lower is better) Translates to: EFFSCLAEIPALLVF*VSALTSNCLVCGLI Trigger: AATAAGGCCACAGACCAGGCAGTTAGATGTCAGTGCGCTCACCAAAAAGACAAGAAGTGCTGGAATTTCTGCCAAGCAGGAAAAGAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS GCA 72 bp | ATAGAGCTCAGCTTTCAACTTTGCAACACGAAAAGATaGCTTGATGCTATTGCTGATGGCCTCCAACCTTCG | + |
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Preference number: 6 (lower is better) Translates to: IELSFQLCNTKR*LDAIADGLQPS Trigger: CGAAGGTTGGAGGCCATCAGCAATAGCATCAAGGCATCTTTTCGTGTTGCAAAGTTGAAAGCTGAGCTCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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| CDS GCA 72 bp | TTTCTGCATGGTACTTTGGGCCCTGAGTTCTTTTCCTaGTTGGCAGAAATTCCAGCACTTCTTGTCTTTTTG | + |
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Preference number: 6 (lower is better) Translates to: FLHGTLGPEFFS*LAEIPALLVFL Trigger: CAAAAAGACAAGAAGTGCTGGAATTTCTGCCAAGCAGGAAAAGAACTCAGGGCCCAAAGTACCATGCAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021796.9 |
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