RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EDF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015092

Ensembl transcript IDs: ENSMUST00000015236.4

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTTGCTTTGTTTGACAGCAGTTATGGGTTGAGGGGGCACACAGGCCTAACCCCCGACCCACGGCAGTGCTaGTGGTCCTGGGGGACCAGC +
Preference number: 2 (lower is better)
Translates to: FALFDSSYGLRGHTGLTPDPRQC*WSWGTS
Trigger: GCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTC...GGGGGTTAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
3UTR-3UTR CCA 90 bp TTTGCTTTGTTTGACAGCAGTTATGGGTTGAGGGGGCACACAGGCCTAACCCCCCAGTGCTGGTGGTCCTaGGGGACCAGCCAGGAGAGC +
Preference number: 2 (lower is better)
Translates to: FALFDSSYGLRGHTGLTPQCWWS*GTSQES
Trigger: GCTCTCCTGGCTGGTCCCCCAGGACCACCAGCACTG...GGGGGTTAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR CCA 90 bp TTTGACCATGTGAGGAGACCCACGGCAGTGCTGGTGGTCCTGGGGGACCAGCCATGGCCTGTGCGGCCGTaGGGCCCTTCTTGCGCAGCA +
Preference number: 4 (lower is better)
Translates to: FDHVRRPTAVLVVLGDQPWPVRP*GPSCAA
Trigger: TGCTGCGCAAGAAGGGCCCCACGGCCGCACAGGCCA...TGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR CCA 90 bp TTTGACCATGTGAGGAGACCCACGGCAGTGCTGGTGGTCCTGGGGGACCAGCCACTCTGCCGGCCCCGCTaGATCACTTTGCCCACCTCC +
Preference number: 4 (lower is better)
Translates to: FDHVRRPTAVLVVLGDQPLCRPR*ITLPTS
Trigger: GGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAG...TGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR TCA 90 bp TCCTGGGGGACCAGCCAGGAGAGCTCAGCCGGAACCACTGGCTTCGAGGCTTTGTCTTCTCCTCGTCGCTaGGCCGCTAAGATGGCCTGC +
Preference number: 4 (lower is better)
Translates to: SWGTSQESSAGTTGFEALSSPRR*AAKMAC
Trigger: GCAGGCCATCTTAGCGGCTCAGCGACGAGGAGAAGA...CAAAGCCTCGAAGCCAGTGGTTCCGGCTGAGCTCTCCTGGCTGGTCCCCCAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR TCA 90 bp TTTGACCATGTGAGGAGACCCACGGCAGTGCTGGTGGTCCTGGGGGACCAGCCAAGGGTCACCCTGTCGTaGTGCAGCTCCTCGGTCTCC +
Preference number: 4 (lower is better)
Translates to: FDHVRRPTAVLVVLGDQPRVTLS*CSSSVS
Trigger: GGAGACCGAGGAGCTGCATCACGACAGGGTGACCCT...TGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR GCA 90 bp TTTGACCATGTGAGGAGACCCACGGCAGTGCTGGTGGTCCTGGGGGACCAGCCAGTCAGGCCTTTGCTCTaGCGGCCCCGCTGGATCACT +
Preference number: 4 (lower is better)
Translates to: FDHVRRPTAVLVVLGDQPVRPLL*RPRWIT
Trigger: AGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGAC...TGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR GCA 90 bp TTTGCTTTGTTTGACAGCAGTTATGGGTTGAGGGGGCACACAGGCCTAACCCCCCCGTGGGGCCCTTCTTaGGCAGCACCGTCACGGTGT +
Preference number: 4 (lower is better)
Translates to: FALFDSSYGLRGHTGLTPPWGPS*AAPSRC
Trigger: ACACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGG...GGGGGTTAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAA
59% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR GCA 90 bp TCCTGGGGGACCAGCCAGGAGAGCTCAGCCGGAACCACTGGCTTCGAGGCTTTGTTAGTAATGGAATGCTaGTTGTTCTGGCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: SWGTSQESSAGTTGFEALLVMEC*LFWPAA
Trigger: GGCTGCTGGCCAGAACAAGCAGCATTCCATTACTAA...CAAAGCCTCGAAGCCAGTGGTTCCGGCTGAGCTCTCCTGGCTGGTCCCCCAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR GCA 90 bp AGGTTTGCTTTGTTTGACAGCAGTTATGGGTTGAGGGGGCACACAGGCCTAACCCCCGCTGGATCACTTTaGCCACCTCCAGGGTCACCC +
Preference number: 4 (lower is better)
Translates to: RFALFDSSYGLRGHTGLTPAGSL*PPPGSP
Trigger: GGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGG...GGTTAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR CCA 90 bp TTTGACCATGTGAGGAGACCCACGGCAGTGCTGGTGGTCCTGGGGGACCAGCCACAGCAGCCCATTTCTTaGATGTCTCCACATCTTCTC +
Preference number: 4 (lower is better)
Translates to: FDHVRRPTAVLVVLGDQPQQPIS*MSPHLL
Trigger: GAGAAGATGTGGAGACATCCAAGAAATGGGCTGCTG...TGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR CAA 90 bp TCCTGGGGGACCAGCCAGGAGAGCTCAGCCGGAACCACTGGCTTCGAGGCTTTGGCCGTGGGGCCCTTCTaGCGCAGCACCGTCACGGTG +
Preference number: 5 (lower is better)
Translates to: SWGTSQESSAGTTGFEALAVGPF*RSTVTV
Trigger: CACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGGC...CAAAGCCTCGAAGCCAGTGGTTCCGGCTGAGCTCTCCTGGCTGGTCCCCCAGGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS GCA 90 bp CCTTCTGGGTCAGGCCTTTGCTCTGCCGGCCCCGCTGGATCACTTTaGCCACCTCCAGGGTCACCCTGTCGTGATGCAGCTCCTCGGTCT +
Preference number: 5 (lower is better)
Translates to: PSGSGLCSAGPAGSL*PPPGSPCRDAAPRS
Trigger: AGACCGAGGAGCTGCATCACGACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS TCA 90 bp CGGCCCCGCTGGATCACTTTGCCCACCTCCAGGGTCACCCTGTCGTaGTGCAGCTCCTCGGTCTCCCGGTCGAGCTTGGCTGTGTTTTTA +
Preference number: 5 (lower is better)
Translates to: RPRWITLPTSRVTLS*CSSSVSRSSLAVFL
Trigger: TAAAAACACAGCCAAGCTCGACCGGGAGACCGAGGAGCTGCATCACGACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS GCA 90 bp TCATTGATTTTCGTGGCCAGGTCCTTCTGGGTCAGGCCTTTGCTCTaGCGGCCCCGCTGGATCACTTTGCCCACCTCCAGGGTCACCCTG +
Preference number: 5 (lower is better)
Translates to: SLIFVARSFWVRPLL*RPRWITLPTSRVTL
Trigger: CAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGGACCTGGCCACGAAAATCAATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR CAA 90 bp TCCTGGGGGACCAGCCAGGAGAGCTCAGCCGGAACCACTGGCTTCGAGGCTTTGGTCTCCCGGTCGAGCTaGGCTGTGTTTTTAGTAATG +
Preference number: 5 (lower is better)
Translates to: SWGTSQESSAGTTGFEALVSRSS*AVFLVM
Trigger: CATTACTAAAAACACAGCCAAGCTCGACCGGGAGAC...CAAAGCCTCGAAGCCAGTGGTTCCGGCTGAGCTCTCCTGGCTGGTCCCCCAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS GCA 90 bp TCCTCGGTCTCCCGGTCGAGCTTGGCTGTGTTTTTAGTAATGGAATaGTGCTTGTTCTGGCCAGCAGCCCATTTCTTGGATGTCTCCACA +
Preference number: 5 (lower is better)
Translates to: SSVSRSSLAVFLVME*CLFWPAAHFLDVST
Trigger: TGTGGAGACATCCAAGAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCATTACTAAAAACACAGCCAAGCTCGACCGGGAGACCGAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS-3UTR CAA 90 bp AGGTTTGCTTTGTTTGACAGCAGTTATGGGTTGAGGGGGCACACAGGCCTAACCGTAATGGAATGCTGCTaGTTCTGGCCAGCAGCCCAT +
Preference number: 5 (lower is better)
Translates to: RFALFDSSYGLRGHTGLTVMECC*FWPAAH
Trigger: ATGGGCTGCTGGCCAGAACAAGCAGCATTCCATTAC...GGTTAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS GCA 90 bp GCCCAAAACCTGGTTATTCGGAATGGCCCGTCCACTTTCATAGTCTaGGATGACTTGCGGCTTCTCATTGATTTTCGTGGCCAGGTCCTT +
Preference number: 5 (lower is better)
Translates to: AQNLVIRNGPSTFIV*DDLRLLIDFRGQVL
Trigger: AAGGACCTGGCCACGAAAATCAATGAGAAGCCGCAAGTCATCGCAGACTATGAAAGTGGACGGGCCATTCCGAATAACCAGGTTTTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS CCA 72 bp TCCTTCTGGGTCAGGCCTTTGCTCTGCCGGCCCCGCTaGATCACTTTGCCCACCTCCAGGGTCACCCTGTCG +
Preference number: 6 (lower is better)
Translates to: SFWVRPLLCRPR*ITLPTSRVTLS
Trigger: CGACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS GCA 72 bp TCAGGCCTTTGCTCTGCCGGCCCCGCTGGATCACTTTaGCCACCTCCAGGGTCACCCTGTCGTGATGCAGCT +
Preference number: 6 (lower is better)
Translates to: SGLCSAGPAGSL*PPPGSPCRDAA
Trigger: AGCTGCATCACGACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS CAA 90 bp GGCTTCTCATTGATTTTCGTGGCCAGGTCCTTCTGGGTCAGGCCTTaGCTCTGCCGGCCCCGCTGGATCACTTTGCCCACCTCCAGGGTC +
Preference number: 6 (lower is better)
Translates to: GFSLIFVARSFWVRP*LCRPRWITLPTSRV
Trigger: GACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGGACCTGGCCACGAAAATCAATGAGAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS CAA 72 bp TTCCCCCGGAGCTTGAGGCCGATGGCTCTCTCAATTTaGCCCAAAACCTGGTTATTCGGAATGGCCCGTCCA +
Preference number: 6 (lower is better)
Translates to: FPRSLRPMALSI*PKTWLFGMARP
Trigger: TGGACGGGCCATTCCGAATAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGGGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS TCA 72 bp CATTTCTTGGATGTCTCCACATCTTCTCCTCGTCGCTaGGCCGCTAAGATGGCCTGCTTAGACTTGGCCTGT +
Preference number: 6 (lower is better)
Translates to: HFLDVSTSSPRR*AAKMACLDLAC
Trigger: ACAGGCCAAGTCTAAGCAGGCCATCTTAGCGGCTCAGCGACGAGGAGAAGATGTGGAGACATCCAAGAAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS CAA 72 bp CGGAATGGCCCGTCCACTTTCATAGTCTGCGATGACTaGCGGCTTCTCATTGATTTTCGTGGCCAGGTCCTT +
Preference number: 6 (lower is better)
Translates to: RNGPSTFIVCDD*RLLIDFRGQVL
Trigger: AAGGACCTGGCCACGAAAATCAATGAGAAGCCGCAAGTCATCGCAGACTATGAAAGTGGACGGGCCATTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS CAA 90 bp CTGGTTATTCGGAATGGCCCGTCCACTTTCATAGTCTGCGATGACTaGCGGCTTCTCATTGATTTTCGTGGCCAGGTCCTTCTGGGTCAG +
Preference number: 6 (lower is better)
Translates to: LVIRNGPSTFIVCDD*RLLIDFRGQVLLGQ
Trigger: CTGACCCAGAAGGACCTGGCCACGAAAATCAATGAGAAGCCGCAAGTCATCGCAGACTATGAAAGTGGACGGGCCATTCCGAATAACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS GCA 72 bp TCCCGGTCGAGCTTGGCTGTGTTTTTAGTAATGGAATaGTGCTTGTTCTGGCCAGCAGCCCATTTCTTGGAT +
Preference number: 6 (lower is better)
Translates to: SRSSLAVFLVME*CLFWPAAHFLD
Trigger: ATCCAAGAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCATTACTAAAAACACAGCCAAGCTCGACCGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS GCA 72 bp CTGGTTATTCGGAATGGCCCGTCCACTTTCATAGTCTaGGATGACTTGCGGCTTCTCATTGATTTTCGTGGC +
Preference number: 6 (lower is better)
Translates to: LVIRNGPSTFIV*DDLRLLIDFRG
Trigger: GCCACGAAAATCAATGAGAAGCCGCAAGTCATCGCAGACTATGAAAGTGGACGGGCCATTCCGAATAACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4
CDS CAA 72 bp TCGAGCTTGGCTGTGTTTTTAGTAATGGAATGCTGCTaGTTCTGGCCAGCAGCCCATTTCTTGGATGTCTCC +
Preference number: 6 (lower is better)
Translates to: SSLAVFLVMECC*FWPAAHFLDVS
Trigger: GGAGACATCCAAGAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCATTACTAAAAACACAGCCAAGCTCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015236.4