RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EDEM3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043019

Ensembl transcript IDs: ENSMUST00000059498.12, ENSMUST00000187951.7, ENSMUST00000188145.7, ENSMUST00000191070.2

Found 342 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCAGAACGCGCTTaGGCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGG +
Preference number: 1 (lower is better)
Translates to: APGSYGGYLPQSERA*AMLRASQESLLGTG
Trigger: CCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR TCA 90 bp CCAGGAGTGGGCAGTCATCTTTCCCTGGCCAGGGATACCGCCATCTaGGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGT +
Preference number: 1 (lower is better)
Translates to: PGVGSHLSLARDTAI*GLVSLHFGWGSFSG
Trigger: ACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCTCAGATGGCGGTATCCCTGGCCAGGGAAAGATGACTGCCCACTCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000191070.2
3UTR CCA 90 bp CCTGGCCAGGGATACCGCCATCTGAGGGCTTGTGAGTCTCCACTTTaGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCA +
Preference number: 1 (lower is better)
Translates to: PGQGYRHLRACESPL*MGQFQWSALTQRAP
Trigger: TGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCTCAGATGGCGGTATCCCTGGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000191070.2
3UTR GCA 90 bp AGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCTaGTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCC +
Preference number: 1 (lower is better)
Translates to: SQNALEQCSEPPRRA*LVQGGCHKPQFTSS
Trigger: GGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR GCA 90 bp TCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTaGTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCAGAACGCGC +
Preference number: 1 (lower is better)
Translates to: STLDGAVSVVSSNTA*SRFLWWLLTPVRTR
Trigger: GCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTaGCTACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGC +
Preference number: 1 (lower is better)
Translates to: VSVVSSNTACSRFLW*LLTPVRTRLSNAQS
Trigger: GCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATaGTGGCTACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAG +
Preference number: 1 (lower is better)
Translates to: AVSVVSSNTACSRFL*WLLTPVRTRLSNAQ
Trigger: CTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 90 bp CATCTGAGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTaGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTAC +
Preference number: 1 (lower is better)
Translates to: HLRACESPLWMGQFQ*SALTQRAPGSYGGY
Trigger: GTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCTCAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 90 bp GACAGTAGTCACCCCGGGACTACAGTCTACTACCATGGTTTCTCATaGCTCTATAAGATAGGGAGATGGAGCAGGGCTTGGAGACGAGCC +
Preference number: 1 (lower is better)
Translates to: DSSHPGTTVYYHGFS*LYKIGRWSRAWRRA
Trigger: GGCTCGTCTCCAAGCCCTGCTCCATCTCCCTATCTTATAGAGCCATGAGAAACCATGGTAGTAGACTGTAGTCCCGGGGTGACTACTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CCA 90 bp GCAACAGCTCCTCCTAGTGGCCAAAGGAATGTAAGTGGCAGTCGCTaGCTTTTCCTAATGTGCCATGGGCTCCCCTTCATGCCCTTAAGT +
Preference number: 1 (lower is better)
Translates to: ATAPPSGQRNVSGSR*LFLMCHGLPFMPLS
Trigger: ACTTAAGGGCATGAAGGGGAGCCCATGGCACATTAGGAAAAGCCAGCGACTGCCACTTACATTCCTTTGGCCACTAGGAGGAGCTGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 90 bp TTCAATCAGAAAGCGACACTGACTCTGTTCCCAGGTTCCATTAGCTaGATTTGCTTCTTGTCTACCCAGGAGTGGGCAGTCATCTTTCCC +
Preference number: 1 (lower is better)
Translates to: FNQKATLTLFPGSIS*ICFLSTQEWAVIFP
Trigger: GGGAAAGATGACTGCCCACTCCTGGGTAGACAAGAAGCAAATTCAGCTAATGGAACCTGGGAACAGAGTCAGTGTCGCTTTCTGATTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 90 bp AAATGCATCTGCTTCAGAACCCGTAGGTCACTTAGAGAGTTCCTGTaGAGGCAGCAAAGCCGAGATGCCACAATACTCGCTCAAATCTTC +
Preference number: 1 (lower is better)
Translates to: KCICFRTRRSLREFL*RQQSRDATILAQIF
Trigger: GAAGATTTGAGCGAGTATTGTGGCATCTCGGCTTTGCTGCCTTCACAGGAACTCTCTAAGTGACCTACGGGTTCTGAAGCAGATGCATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 90 bp CCCAAGCCCAAGGCAGTGAAGCTTTCTTCAATCAGAAAGCGACACTaGCTCTGTTCCCAGGTTCCATTAGCTGAATTTGCTTCTTGTCTA +
Preference number: 1 (lower is better)
Translates to: PKPKAVKLSSIRKRH*LCSQVPLAEFASCL
Trigger: TAGACAAGAAGCAAATTCAGCTAATGGAACCTGGGAACAGAGTCAGTGTCGCTTTCTGATTGAAGAAAGCTTCACTGCCTTGGGCTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 90 bp TGTTGGGAGAGGAAAAGAAATCAAGTCGTCCTGGCCATTTGTCACTaGTTGAAGCATGTAACAGCGATGCGCAGAAACTGTCATTGCCGT +
Preference number: 1 (lower is better)
Translates to: CWERKRNQVVLAICH*LKHVTAMRRNCHCR
Trigger: ACGGCAATGACAGTTTCTGCGCATCGCTGTTACATGCTTCAATCAGTGACAAATGGCCAGGACGACTTGATTTCTTTTCCTCTCCCAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CCA 90 bp CATGGTTTCTCATGGCTCTATAAGATAGGGAGATGGAGCAGGGCTTaGAGACGAGCCTTCCATCTCAAACTGCATACTAAAATGGATGGA +
Preference number: 1 (lower is better)
Translates to: HGFSWLYKIGRWSRA*RRAFHLKLHTKMDG
Trigger: TCCATCCATTTTAGTATGCAGTTTGAGATGGAAGGCTCGTCTCCAAGCCCTGCTCCATCTCCCTATCTTATAGAGCCATGAGAAACCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 90 bp TGTGGTGATCATTTCAGCTCTATTTCTAAGCAGTCAACATTTAACTaGGGTAGACCAGATGTTTCTAAACTCAGGGTCTCAGAAGTCCCT +
Preference number: 1 (lower is better)
Translates to: CGDHFSSISKQSTFN*GRPDVSKLRVSEVP
Trigger: AGGGACTTCTGAGACCCTGAGTTTAGAAACATCTGGTCTACCTCAGTTAAATGTTGACTGCTTAGAAATAGAGCTGAAATGATCACCACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CCA 90 bp CTATTTGAATTACTTAGGCTGAGCTTTCTTATGATGGATCTGGCATaGAGTCTGGTGAGAGAACAAACGCTGGCTTTGTATAAGAAAAGT +
Preference number: 1 (lower is better)
Translates to: LFELLRLSFLMMDLA*SLVREQTLALYKKS
Trigger: ACTTTTCTTATACAAAGCCAGCGTTTGTTCTCTCACCAGACTCCATGCCAGATCCATCATAAGAAAGCTCAGCCTAAGTAATTCAAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CAA 90 bp TGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCAGAACGCGCTaGAGCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGG +
Preference number: 2 (lower is better)
Translates to: CSRFLWWLLTPVRTR*SNAQSLPGEPAWYR
Trigger: CCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR-3UTR CCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTTCCAGGTTCCTATGGTaGCTACTTACCCCAGTCAGA +
Preference number: 2 (lower is better)
Translates to: CESPLWMGQFQWSALTQRSRFLW*LLTPVR
Trigger: TCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGA...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR-3UTR CCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACATCCAGGTTCCTATGGTaGCTACTTACCCCAGTCAGA +
Preference number: 2 (lower is better)
Translates to: RACESPLWMGQFQWSALTSRFLW*LLTPVR
Trigger: TCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGA...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CAA 90 bp AGGTCATTGTTGGGAGAGGAAAAGAAATCAAGTCGTCCTGGCCATTaGTCACTGATTGAAGCATGTAACAGCGATGCGCAGAAACTGTCA +
Preference number: 2 (lower is better)
Translates to: RSLLGEEKKSSRPGH*SLIEACNSDAQKLS
Trigger: TGACAGTTTCTGCGCATCGCTGTTACATGCTTCAATCAGTGACAAATGGCCAGGACGACTTGATTTCTTTTCCTCTCCCAACAATGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR-3UTR CCA 90 bp GTTGATATTGCAACATTACAGTTTCTCCTTCTCTATTTACCCCGAGCAGTAAGCTTGTCTACCCAGGAGTaGGCAGTCATCTTTCCCTGG +
Preference number: 2 (lower is better)
Translates to: VDIATLQFLLLYLPRAVSLSTQE*AVIFPW
Trigger: CCAGGGAAAGATGACTGCCCACTCCTGGGTAGACAA...GCTTACTGCTCGGGGTAAATAGAGAAGGAGAAACTGTAATGTTGCAATATCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR-3UTR CCA 90 bp ATGCTGTTGGAATTTCCTAGTGAACTCAAAAGACTACTTTGTGGCAGGCAGTATTTTCCTAATGTGCCATaGGCTCCCCTTCATGCCCTT +
Preference number: 2 (lower is better)
Translates to: MLLEFPSELKRLLCGRQYFPNVP*APLHAL
Trigger: AAGGGCATGAAGGGGAGCCCATGGCACATTAGGAAA...ATACTGCCTGCCACAAAGTAGTCTTTTGAGTTCACTAGGAAATTCCAACAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CAA 90 bp GGCAGTATGTCAAATACAAAAATGGATGGAGACTCAGTTAGAATGTaGTGTTCTGACGCTGAACGTATTCCTCTTTTCTTAAGTAGGGGG +
Preference number: 2 (lower is better)
Translates to: GSMSNTKMDGDSVRM*CSDAERIPLFLSRG
Trigger: CCCCCTACTTAAGAAAAGAGGAATACGTTCAGCGTCAGAACACAACATTCTAACTGAGTCTCCATCCATTTTTGTATTTGACATACTGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR-3UTR CCA 90 bp ATCTCCCCTTCTGTATACTCTATGTATTACGGTTCTATCTTCTCACACCAAACTCACTGGGCTCAGCTTTaGTTAAATGCTAAGGTCATT +
Preference number: 2 (lower is better)
Translates to: ISPSVYSMYYGSIFSHQTHWAQL*LNAKVI
Trigger: AATGACCTTAGCATTTAACCAAAGCTGAGCCCAGTG...AGTTTGGTGTGAGAAGATAGAACCGTAATACATAGAGTATACAGAAGGGGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR-3UTR TCA 90 bp ATGCTGTTGGAATTTCCTAGTGAACTCAAAAGACTACTTTGTGGCAGGCAGTATCATGGTAAAAAGGAATaGAGTCCCTCAAATATTCCT +
Preference number: 2 (lower is better)
Translates to: MLLEFPSELKRLLCGRQYHGKKE*SPSNIP
Trigger: AGGAATATTTGAGGGACTTCATTCCTTTTTACCATG...ATACTGCCTGCCACAAAGTAGTCTTTTGAGTTCACTAGGAAATTCCAACAGCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR GCA 72 bp GTGGCTACTTACCCCAGTCAGAACGCGCTTGAGCAATaGTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAG +
Preference number: 3 (lower is better)
Translates to: VATYPSQNALEQ*SEPPRRACLVQ
Trigger: CTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR TCA 72 bp TCCTATGGTGGCTACTTACCCCAGTCAGAACGCGCTTaGGCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTT +
Preference number: 3 (lower is better)
Translates to: SYGGYLPQSERA*AMLRASQESLL
Trigger: AAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR GCA 72 bp GCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCTaGTTGGTACAGGGTGGGTGTCACAAACCACAGTTT +
Preference number: 3 (lower is better)
Translates to: ALEQCSEPPRRA*LVQGGCHKPQF
Trigger: AAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 72 bp GTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATaGTGGCTACTTACCCCAGTCAGAACGCGCTTGAGC +
Preference number: 3 (lower is better)
Translates to: VVSSNTACSRFL*WLLTPVRTRLS
Trigger: GCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR GCA 72 bp GATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTaGTCCAGGTTCCTATGGTGGCTACTTACCCCAGTC +
Preference number: 3 (lower is better)
Translates to: DGAVSVVSSNTA*SRFLWWLLTPV
Trigger: GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 72 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTaGCTACTTACCCCAGTCAGAACGCGCTTGAGCAAT +
Preference number: 3 (lower is better)
Translates to: VSSNTACSRFLW*LLTPVRTRLSN
Trigger: ATTGCTCAAGCGCGTTCTGACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 72 bp GGATACCGCCATCTGAGGGCTTGTGAGTCTCCACTTTaGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAG +
Preference number: 3 (lower is better)
Translates to: GYRHLRACESPL*MGQFQWSALTQ
Trigger: CTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCTCAGATGGCGGTATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000191070.2
3UTR CCA 72 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTaGGTGTCACAAACCACAGTTTACCTCTTCCTTTTA +
Preference number: 3 (lower is better)
Translates to: LRASQESLLGTG*VSQTTVYLFLL
Trigger: TAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 72 bp GCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTaGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTAT +
Preference number: 3 (lower is better)
Translates to: ACESPLWMGQFQ*SALTQRAPGSY
Trigger: ATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CCA 72 bp CACCCCGGGACTACAGTCTACTACCATGGTTTCTCATaGCTCTATAAGATAGGGAGATGGAGCAGGGCTTGG +
Preference number: 3 (lower is better)
Translates to: HPGTTVYYHGFS*LYKIGRWSRAW
Trigger: CCAAGCCCTGCTCCATCTCCCTATCTTATAGAGCCATGAGAAACCATGGTAGTAGACTGTAGTCCCGGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 72 bp TGCTTCAGAACCCGTAGGTCACTTAGAGAGTTCCTGTaGAGGCAGCAAAGCCGAGATGCCACAATACTCGCT +
Preference number: 3 (lower is better)
Translates to: CFRTRRSLREFL*RQQSRDATILA
Trigger: AGCGAGTATTGTGGCATCTCGGCTTTGCTGCCTTCACAGGAACTCTCTAAGTGACCTACGGGTTCTGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 72 bp AAAGCGACACTGACTCTGTTCCCAGGTTCCATTAGCTaGATTTGCTTCTTGTCTACCCAGGAGTGGGCAGTC +
Preference number: 3 (lower is better)
Translates to: KATLTLFPGSIS*ICFLSTQEWAV
Trigger: GACTGCCCACTCCTGGGTAGACAAGAAGCAAATTCAGCTAATGGAACCTGGGAACAGAGTCAGTGTCGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR GCA 72 bp GCGATGCGCAGAAACTGTCATTGCCGTAAATGCATCTaGTTCAGAACCCGTAGGTCACTTAGAGAGTTCCTG +
Preference number: 3 (lower is better)
Translates to: AMRRNCHCRKCI*FRTRRSLREFL
Trigger: CAGGAACTCTCTAAGTGACCTACGGGTTCTGAAGCAGATGCATTTACGGCAATGACAGTTTCTGCGCATCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR GCA 72 bp AGGAATGTAAGTGGCAGTCGCTGGCTTTTCCTAATGTaGCATGGGCTCCCCTTCATGCCCTTAAGTTCTCAA +
Preference number: 3 (lower is better)
Translates to: RNVSGSRWLFLM*HGLPFMPLSSQ
Trigger: TTGAGAACTTAAGGGCATGAAGGGGAGCCCATGGCACATTAGGAAAAGCCAGCGACTGCCACTTACATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CCA 72 bp TGTAAGTGGCAGTCGCTGGCTTTTCCTAATGTGCCATaGGCTCCCCTTCATGCCCTTAAGTTCTCAAAGGAA +
Preference number: 3 (lower is better)
Translates to: CKWQSLAFPNVP*APLHALKFSKE
Trigger: TTCCTTTGAGAACTTAAGGGCATGAAGGGGAGCCCATGGCACATTAGGAAAAGCCAGCGACTGCCACTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR GCA 72 bp GTAACAGCGATGCGCAGAAACTGTCATTGCCGTAAATaGATCTGCTTCAGAACCCGTAGGTCACTTAGAGAG +
Preference number: 3 (lower is better)
Translates to: VTAMRRNCHCRK*ICFRTRRSLRE
Trigger: CTCTCTAAGTGACCTACGGGTTCTGAAGCAGATGCATTTACGGCAATGACAGTTTCTGCGCATCGCTGTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 72 bp CAATACTCGCTCAAATCTTCCCCAAGCCCAAGGCAGTaGAGCTTTCTTCAATCAGAAAGCGACACTGACTCT +
Preference number: 3 (lower is better)
Translates to: QYSLKSSPSPRQ*SFLQSESDTDS
Trigger: AGAGTCAGTGTCGCTTTCTGATTGAAGAAAGCTTCACTGCCTTGGGCTTGGGGAAGATTTGAGCGAGTATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CCA 72 bp TCATGGCTCTATAAGATAGGGAGATGGAGCAGGGCTTaGAGACGAGCCTTCCATCTCAAACTGCATACTAAA +
Preference number: 3 (lower is better)
Translates to: SWLYKIGRWSRA*RRAFHLKLHTK
Trigger: TTTAGTATGCAGTTTGAGATGGAAGGCTCGTCTCCAAGCCCTGCTCCATCTCCCTATCTTATAGAGCCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 72 bp CTTATAAAAGGGCACGCTTACCTGGGACCTAAGACATaGACTTACACAACTACAGCACAGCACTGCTGTCAT +
Preference number: 3 (lower is better)
Translates to: LIKGHAYLGPKT*TYTTTAQHCCH
Trigger: ATGACAGCAGTGCTGTGCTGTAGTTGTGTAAGTTCATGTCTTAGGTCCCAGGTAAGCGTGCCCTTTTATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 72 bp AGGAAAAGAAATCAAGTCGTCCTGGCCATTTGTCACTaGTTGAAGCATGTAACAGCGATGCGCAGAAACTGT +
Preference number: 3 (lower is better)
Translates to: RKRNQVVLAICH*LKHVTAMRRNC
Trigger: ACAGTTTCTGCGCATCGCTGTTACATGCTTCAATCAGTGACAAATGGCCAGGACGACTTGATTTCTTTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CCA 72 bp TTACTTAGGCTGAGCTTTCTTATGATGGATCTGGCATaGAGTCTGGTGAGAGAACAAACGCTGGCTTTGTAT +
Preference number: 3 (lower is better)
Translates to: LLRLSFLMMDLA*SLVREQTLALY
Trigger: ATACAAAGCCAGCGTTTGTTCTCTCACCAGACTCCATGCCAGATCCATCATAAGAAAGCTCAGCCTAAGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR-3UTR CAA 90 bp CATTCAGTACCTCAAAACCACGTTGTAGAGAAAAGTTACTGTGTAATGCCATGGAGTCGTCCTGGCCATTaGTCACTGATTGAAGCATGT +
Preference number: 3 (lower is better)
Translates to: HSVPQNHVVEKSYCVMPWSRPGH*SLIEAC
Trigger: ACATGCTTCAATCAGTGACAAATGGCCAGGACGACT...CCATGGCATTACACAGTAACTTTTCTCTACAACGTGGTTTTGAGGTACTGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR GCA 72 bp TTTAAAGGATTTGGTTTTCCTAAACAAATCAATAGGTaGCTTAATGAAGGGCAACAGCTCCTCCTAGTGGCC +
Preference number: 3 (lower is better)
Translates to: FKGFGFPKQINR*LNEGQQLLLVA
Trigger: GGCCACTAGGAGGAGCTGTTGCCCTTCATTAAGGCACCTATTGATTTGTTTAGGAAAACCAAATCCTTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR TCA 72 bp CATTTCAGCTCTATTTCTAAGCAGTCAACATTTAACTaGGGTAGACCAGATGTTTCTAAACTCAGGGTCTCA +
Preference number: 3 (lower is better)
Translates to: HFSSISKQSTFN*GRPDVSKLRVS
Trigger: TGAGACCCTGAGTTTAGAAACATCTGGTCTACCTCAGTTAAATGTTGACTGCTTAGAAATAGAGCTGAAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CCA 90 bp AGGAGTGGGCAGTCATCTTTCCCTGGCCAGGGATACCGCCATCTGAGGGCTTGTCCGTGCACACGGACGTaGCCAACACCAGACAGAGCG +
Preference number: 4 (lower is better)
Translates to: RSGQSSFPGQGYRHLRACPCTRT*PTPDRA
Trigger: CGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGG...ACAAGCCCTCAGATGGCGGTATCCCTGGCCAGGGAAAGATGACTGCCCACTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAGGCCGCTGGTGGTGTTaGAAGCTGGCAGGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: AMLRASQESLLGTGWVSQGRWWC*KLAGAC
Trigger: ACAAGCTCCTGCCAGCTTTCAACACCACCAGCGGCC...TTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAGGCCGCTGGTGGTGTTaGAAGCTGGCAGGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPGRWWC*KLAGAC
Trigger: ACAAGCTCCTGCCAGCTTTCAACACCACCAGCGGCC...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGCTTTCTCCTTCAGCATaGTGGCCAGCGAGTGTCCGC +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQLSPSA*WPASVR
Trigger: GCGGACACTCGCTGGCCATCATGCTGAAGGAGAAAG...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCCCGTGCACACGGACGTaGCCAACACCAGACAGAGCG +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSPCTRT*PTPDRA
Trigger: CGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGG...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCATGCTGCCTTCCTTGCTaGACAGGAACAGCATGGGGA +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPCCLPC*TGTAWG
Trigger: TCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAGCA...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTGCTGCCTTCCTTGCTaGACAGGAACAGCATGGGGA +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQCCLPC*TGTAWG
Trigger: TCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAGCA...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTGCCTTCCTTGCTaGACAGGAACAGCATGGGGA +
Preference number: 4 (lower is better)
Translates to: TYPSQNALEQCSEPPRRACCLPC*TGTAWG
Trigger: TCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAGCA...GGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCGGAGACGCCTCTGAGTaGGAATCTGCAGGGTGTTCA +
Preference number: 4 (lower is better)
Translates to: TYPSQNALEQCSEPPRRAGDASE*ESAGCS
Trigger: TGAACACCCTGCAGATTCTCACTCAGAGGCGTCTCC...GGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGGAGGATCAAGGTGCCTaGACAGGCTGTACAGGTGTC +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQEDQGA*TGCTGV
Trigger: GACACCTGTACAGCCTGTGCAGGCACCTTGATCCTC...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACCCTCATGACTCCCAGTaGGAACATCCTTCATGGCAG +
Preference number: 4 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHPHDSQ*EHPSWQ
Trigger: CTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGG...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACCGTGCACACGGACGTaGCCAACACCAGACAGAGCG +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLPCTRT*PTPDRA
Trigger: CGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGG...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTCCGTGCACACGGACGTaGCCAACACCAGACAGAGCG +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGPCTRT*PTPDRA
Trigger: CGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGG...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAGCTTGGATTGCATGTTaGACCAGCTGGACTCGCCCA +
Preference number: 4 (lower is better)
Translates to: AMLRASQESLLGTGWVSQAWIAC*TSWTRP
Trigger: TGGGCGAGTCCAGCTGGTCCAACATGCAATCCAAGC...TTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR TCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACTTTCTCCTTCAGCATaGTGGCCAGCGAGTGTCCGC +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLLSPSA*WPASVR
Trigger: GCGGACACTCGCTGGCCATCATGCTGAAGGAGAAAG...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCCTTTCTCCTTCAGCATaGTGGCCAGCGAGTGTCCGC +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSLSPSA*WPASVR
Trigger: GCGGACACTCGCTGGCCATCATGCTGAAGGAGAAAG...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCGGCCGCTGGTGGTGTTaGAAGCTGGCAGGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFGRWWC*KLAGAC
Trigger: ACAAGCTCCTGCCAGCTTTCAACACCACCAGCGGCC...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGAGATCCAGCCCAAACTaGGCTGGTCCAGCAGTTAAG +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQRSSPN*AGPAVK
Trigger: CTTAACTGCTGGACCAGCTCAGTTTGGGCTGGATCT...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAACAGCATGGGGATCTTaGTGTCGTCTGTGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: LRASQESLLGTGWVSQTTTAWGS*CRLCPS
Trigger: GGAAGGACACAGACGACATCAAGATCCCCATGCTGT...TGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACTGCTGCCTTCCTTGCTaGACAGGAACAGCATGGGGA +
Preference number: 4 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNCCLPC*TGTAWG
Trigger: TCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAGCA...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACACTAGCAGCTTGGATTaGATGTTGGACCAGCTGGAC +
Preference number: 4 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHTSSLD*MLDQLD
Trigger: GTCCAGCTGGTCCAACATGCAATCCAAGCTGCTAGT...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR CCA 90 bp AGGAGTGGGCAGTCATCTTTCCCTGGCCAGGGATACCGCCATCTGAGGGCTTGTATGGAGTCTATAGGCTaGGCCTTTGTACCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: RSGQSSFPGQGYRHLRACMESIG*AFVPQL
Trigger: CAGCTGGGGTACAAAGGCCCAGCCTATAGACTCCAT...ACAAGCCCTCAGATGGCGGTATCCCTGGCCAGGGAAAGATGACTGCCCACTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACAGATCCAGCCCAAACTaGGCTGGTCCAGCAGTTAAG +
Preference number: 4 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNRSSPN*AGPAVK
Trigger: CTTAACTGCTGGACCAGCTCAGTTTGGGCTGGATCT...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCGAGGATCAAGGTGCCTaGACAGGCTGTACAGGTGTC +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSEDQGA*TGCTGV
Trigger: GACACCTGTACAGCCTGTGCAGGCACCTTGATCCTC...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCACTCGAGGATCAAGGTaGCTGCACAGGCTGTACAGG +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSTRGSR*LHRLYR
Trigger: CCTGTACAGCCTGTGCAGGCACCTTGATCCTCGAGT...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCACTCGAGGATCAAGGTaGCTGCACAGGCTGTACAGG +
Preference number: 4 (lower is better)
Translates to: VSSNTACSRFLWWLLTPVTRGSR*LHRLYR
Trigger: CCTGTACAGCCTGTGCAGGCACCTTGATCCTCGAGT...GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACTGCGAACATCCTTCATaGCAGCAAACCCGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNCEHPS*QQTRKA
Trigger: TGCCTTGCGGGTTTGCTGCCATGAAGGATGTTCGCA...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTAGCATGTTGGACCAGCTaGACTCGCCCATCTTTGAGG +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLACWTS*TRPSLR
Trigger: CCTCAAAGATGGGCGAGTCCAGCTGGTCCAACATGC...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR CCA 90 bp CAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAAATGGAGTCTATAGGCTaGGCCTTTGTACCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: QCSEPPRRACLVQGGCHKMESIG*AFVPQL
Trigger: CAGCTGGGGTACAAAGGCCCAGCCTATAGACTCCAT...TTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGGACCCCCAAGAACTCTaGTGTTTGTTTCGAAGACTG +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQDPQEL*CLFRRL
Trigger: CAGTCTTCGAAACAAACATCAGAGTTCTTGGGGGTC...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTCTTTCTCCTTCAGCATaGTGGCCAGCGAGTGTCCGC +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLLSPSA*WPASVR
Trigger: GCGGACACTCGCTGGCCATCATGCTGAAGGAGAAAG...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCGGCCTTAAAGGATGCTaGGCCCAATGGACCCTGAAA +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSGLKGC*AQWTLK
Trigger: TTTCAGGGTCCATTGGGCTCAGCATCCTTTAAGGCC...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACGGTTGTGTTCTTCTTTaGGATGCTTCGGTTTGTGGT +
Preference number: 4 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHGCVLL*DASVCG
Trigger: ACCACAAACCGAAGCATCTCAAAGAAGAACACAACC...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTAACAGCATGGGGATCTTaGTGTCGTCTGTGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLTAWGS*CRLCPS
Trigger: GGAAGGACACAGACGACATCAAGATCCCCATGCTGT...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCCCTCATGACTCCCAGTaGGAACATCCTTCATGGCAG +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSPHDSQ*EHPSWQ
Trigger: CTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGG...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTGCGTGCCTTTTCTaGAAACATGCACTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: LRASQESLLGTGWVSQTTVACLF*KHALSS
Trigger: AGAGGACAGTGCATGTTTGCAGAAAAGGCACGCAAC...TGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAGTTGCGTGCCTTTTCTaGAAACATGCACTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPVACLF*KHALSS
Trigger: AGAGGACAGTGCATGTTTGCAGAAAAGGCACGCAAC...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCGGTGGTGTTGAAAGCTaGCAGGAGCTTGTAACCCAG +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSGGVES*QELVTQ
Trigger: CTGGGTTACAAGCTCCTGCCAGCTTTCAACACCACC...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTAGGTGGTGTTGAAAGCTaGCAGGAGCTTGTAACCCAG +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLGGVES*QELVTQ
Trigger: CTGGGTTACAAGCTCCTGCCAGCTTTCAACACCACC...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AGGAGTGGGCAGTCATCTTTCCCTGGCCAGGGATACCGCCATCTGAGGGCTTGTCCGAGCGTTCAGCATTaGTTTGTGGATATGCACATC +
Preference number: 4 (lower is better)
Translates to: RSGQSSFPGQGYRHLRACPSVQH*FVDMHI
Trigger: GATGTGCATATCCACAAACCAATGCTGAACGCTCGG...ACAAGCCCTCAGATGGCGGTATCCCTGGCCAGGGAAAGATGACTGCCCACTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGCCGAGCGTTCAGCATTaGTTTGTGGATATGCACATC +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQPSVQH*FVDMHI
Trigger: GATGTGCATATCCACAAACCAATGCTGAACGCTCGG...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAACCGAGCGTTCAGCATTaGTTTGTGGATATGCACATC +
Preference number: 4 (lower is better)
Translates to: AMLRASQESLLGTGWVSQPSVQH*FVDMHI
Trigger: GATGTGCATATCCACAAACCAATGCTGAACGCTCGG...TTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAATGCTTCGGTTTGTGGTaGAAAGCCAAAGCGGTAACA +
Preference number: 4 (lower is better)
Translates to: AMLRASQESLLGTGWVSQCFGLW*KAKAVT
Trigger: TGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCA...TTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCATCTCGTGGTTTTCGGTaGACCCAGATATCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPSRGFR*TQISVQ
Trigger: CTGAACAGATATCTGGGTCCACCGAAAACCACGAGA...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAGGCAGGTTAAAGGCATaGGCTCATCAGCTGGGTAGG +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTGRLKA*AHQLGR
Trigger: CCTACCCAGCTGATGAGCTCATGCCTTTAACCTGCC...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAACCCAGTCTCCAGTATaGATATTGATAGTCACGCCT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPTQSPV*ILIVTP
Trigger: AGGCGTGACTATCAATATTCATACTGGAGACTGGGT...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTAGGCCTTAAAGGATGCTaGGCCCAATGGACCCTGAAA +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLGLKGC*AQWTLK
Trigger: TTTCAGGGTCCATTGGGCTCAGCATCCTTTAAGGCC...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCGGCCTTAAAGGATGCTaGGCCCAATGGACCCTGAAA +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFGLKGC*AQWTLK
Trigger: TTTCAGGGTCCATTGGGCTCAGCATCCTTTAAGGCC...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACTTCAGCCAAGAAGAATaGATCCATTCTGTCCTCATG +
Preference number: 4 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHFSQEE*IHSVLM
Trigger: CATGAGGACAGAATGGATTCATTCTTCTTGGCTGAA...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAGGTTGTGTTCTTCTTTaGGATGCTTCGGTTTGTGGT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPGCVLL*DASVCG
Trigger: ACCACAAACCGAAGCATCTCAAAGAAGAACACAACC...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp CAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACTATCATCTCCTGCATaGACCGTAACCCATCTTCAG +
Preference number: 4 (lower is better)
Translates to: QCSEPPRRACLVQGGCHKLSSPA*TVTHLQ
Trigger: CTGAAGATGGGTTACGGTTCATGCAGGAGATGATAG...TTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCTATCATCTCCTGCATaGACCGTAACCCATCTTCAG +
Preference number: 4 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNLSSPA*TVTHLQ
Trigger: CTGAAGATGGGTTACGGTTCATGCAGGAGATGATAG...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTGGAGACGCCTCTGAGTaGGAATCTGCAGGGTGTTCA +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLGDASE*ESAGCS
Trigger: TGAACACCCTGCAGATTCTCACTCAGAGGCGTCTCC...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAGAGGATCAAGGTGCCTaGACAGGCTGTACAGGTGTC +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTEDQGA*TGCTGV
Trigger: GACACCTGTACAGCCTGTGCAGGCACCTTGATCCTC...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCATCAAGGGTTCACGGATaGTCTGAGCATACAATGGAT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPSRVHG*SEHTMD
Trigger: ATCCATTGTATGCTCAGAGCATCCGTGAACCCTTGA...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGAGCTCTATCATCTCCTaGATGAACCGTAACCCATCT +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQSSIIS*MNRNPS
Trigger: AGATGGGTTACGGTTCATGCAGGAGATGATAGAGCT...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AGGAGTGGGCAGTCATCTTTCCCTGGCCAGGGATACCGCCATCTGAGGGCTTGTAGCTCTATCATCTCCTaGATGAACCGTAACCCATCT +
Preference number: 4 (lower is better)
Translates to: RSGQSSFPGQGYRHLRACSSIIS*MNRNPS
Trigger: AGATGGGTTACGGTTCATGCAGGAGATGATAGAGCT...ACAAGCCCTCAGATGGCGGTATCCCTGGCCAGGGAAAGATGACTGCCCACTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAAATTTTTCCCATCACTaGCTCAGGGTTAGTGAGCTC +
Preference number: 4 (lower is better)
Translates to: LRASQESLLGTGWVSQTTNFSHH*LRVSEL
Trigger: GAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATT...TGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACGAGAGCATCTGCTCTaGGCTCTGATTCTGAGAATC +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLREHLL*ALILRI
Trigger: GATTCTCAGAATCAGAGCGCAGAGCAGATGCTCTCG...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCGGTGGTGTTGAAAGCTaGCAGGAGCTTGTAACCCAG +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFGGVES*QELVTQ
Trigger: CTGGGTTACAAGCTCCTGCCAGCTTTCAACACCACC...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGTGGTGTTGAAAGCTaGCAGGAGCTTGTAACCCAG +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGGGVES*QELVTQ
Trigger: CTGGGTTACAAGCTCCTGCCAGCTTTCAACACCACC...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp CAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCGAGCGTTCAGCATTaGTTTGTGGATATGCACATC +
Preference number: 4 (lower is better)
Translates to: QCSEPPRRACLVQGGCHKPSVQH*FVDMHI
Trigger: GATGTGCATATCCACAAACCAATGCTGAACGCTCGG...TTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTTGCGAACATCCTTCATaGCAGCAAACCCGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGCEHPS*QQTRKA
Trigger: TGCCTTGCGGGTTTGCTGCCATGAAGGATGTTCGCA...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAGCTTGGATTGCATGTTaGACCAGCTGGACTCGCCCA +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTAWIAC*TSWTRP
Trigger: TGGGCGAGTCCAGCTGGTCCAACATGCAATCCAAGC...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR CCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAATTGAACTAGCAGCTTaGATTGCATGTTGGACCAGC +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPIELAA*IACWTS
Trigger: GCTGGTCCAACATGCAATCCAAGCTGCTAGTTCAAT...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR CCA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCCTTCTGTTGCTGACTaGACAGCTCTATCATCTCCT +
Preference number: 4 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNPSVAD*TALSSP
Trigger: AGGAGATGATAGAGCTGTCCAGTCAGCAACAGAAGG...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCTCACAATGCCACCGATaGCGCCAGCATTCTGAATGT +
Preference number: 4 (lower is better)
Translates to: VSSNTACSRFLWWLLTPVSQCHR*RQHSEC
Trigger: ACATTCAGAATGCTGGCGCCATCGGTGGCATTGTGA...GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCATGGAGTCTATAGGCTaGGCCTTTGTACCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFMESIG*AFVPQL
Trigger: CAGCTGGGGTACAAAGGCCCAGCCTATAGACTCCAT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGAACATTTCCAGGACTTaGTTTCCAAGCTTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQNISRT*FPSFCF
Trigger: GAAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTT...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTAGACCCCCAAGAACTCTaGTGTTTGTTTCGAAGACTG +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLDPQEL*CLFRRL
Trigger: CAGTCTTCGAAACAAACATCAGAGTTCTTGGGGGTC...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCATATGGTCGCTCCTGTaGATCGACTCAGTGCAGCAA +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFIWSLL*IDSVQQ
Trigger: TTGCTGCACTGAGTCGATTCACAGGAGCGACCATAT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTAATATGGTCGCTCCTGTaGATCGACTCAGTGCAGCAA +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLIWSLL*IDSVQQ
Trigger: TTGCTGCACTGAGTCGATTCACAGGAGCGACCATAT...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTGGCCTTAAAGGATGCTaGGCCCAATGGACCCTGAAA +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLGLKGC*AQWTLK
Trigger: TTTCAGGGTCCATTGGGCTCAGCATCCTTTAAGGCC...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACGGTTCACGGATGCTCTaGGCATACAATGGATCATTA +
Preference number: 4 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNGSRML*AYNGSL
Trigger: TAATGATCCATTGTATGCTCAGAGCATCCGTGAACC...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAGGACTCGCCCATCTTTaGGGTGAATCAAACTCACCC +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTGLAHL*GESNSP
Trigger: GGGTGAGTTTGATTCACCTCAAAGATGGGCGAGTCC...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR TCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTGGACTCGCCCATCTTTaGGGTGAATCAAACTCACCC +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLGLAHL*GESNSP
Trigger: GGGTGAGTTTGATTCACCTCAAAGATGGGCGAGTCC...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR TCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTAGATCCAGCCCAAACTaGGCTGGTCCAGCAGTTAAG +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRRSSPN*AGPAVK
Trigger: CTTAACTGCTGGACCAGCTCAGTTTGGGCTGGATCT...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGGGTTAGTGAGCTCTaGACAACCATTATATGGTTT +
Preference number: 4 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHRVSEL*TTIIWF
Trigger: AAACCATATAATGGTTGTTCAGAGCTCACTAACCCT...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTATGGCGCCAGCATTCTaGATGTTGCGTGCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGMAPAF*MLRAFS
Trigger: AGAAAAGGCACGCAACATTCAGAATGCTGGCGCCAT...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTACAGCATGGGGATCTTaGTGTCGTCTGTGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRTAWGS*CRLCPS
Trigger: GGAAGGACACAGACGACATCAAGATCCCCATGCTGT...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACCTCATGACTCCCAGTaGGAACATCCTTCATGGCAG +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTPHDSQ*EHPSWQ
Trigger: CTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGG...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCAATTTTTCCCATCACTaGCTCAGGGTTAGTGAGCTC +
Preference number: 4 (lower is better)
Translates to: GQFQWSALTQRAPGSYGGNFSHH*LRVSEL
Trigger: GAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATT...GCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCGTTGCGTGCCTTTTCTaGAAACATGCACTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: VSSNTACSRFLWWLLTPVVACLF*KHALSS
Trigger: AGAGGACAGTGCATGTTTGCAGAAAAGGCACGCAAC...GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACATTCTGAATGTTGCGTaGCTTTTCTGCAAACATGCA +
Preference number: 4 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHILNVA*LFCKHA
Trigger: TGCATGTTTGCAGAAAAGGCACGCAACATTCAGAAT...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACGAGAGCATCTGCTCTaGGCTCTGATTCTGAGAATC +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLREHLL*ALILRI
Trigger: GATTCTCAGAATCAGAGCGCAGAGCAGATGCTCTCG...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCCATGAGCTCATCAGCTaGGTAGGCATGTTCCATATA +
Preference number: 4 (lower is better)
Translates to: GQFQWSALTQRAPGSYGGHELIS*VGMFHI
Trigger: TATATGGAACATGCCTACCCAGCTGATGAGCTCATG...GCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCTGCTTCGGTTTGTGGTaGAAAGCCAAAGCGGTAACA +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSCFGLW*KAKAVT
Trigger: TGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCA...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTTCTGTTGCTGACTaGACAGCTCTATCATCTCCT +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLPSVAD*TALSSP
Trigger: AGGAGATGATAGAGCTGTCCAGTCAGCAACAGAAGG...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTTCACAATGCCACCGATaGCGCCAGCATTCTGAATGT +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGSQCHR*RQHSEC
Trigger: ACATTCAGAATGCTGGCGCCATCGGTGGCATTGTGA...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAATGGAGTCTATAGGCTaGGCCTTTGTACCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTMESIG*AFVPQL
Trigger: CAGCTGGGGTACAAAGGCCCAGCCTATAGACTCCAT...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCGACCCCCAAGAACTCTaGTGTTTGTTTCGAAGACTG +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFDPQEL*CLFRRL
Trigger: CAGTCTTCGAAACAAACATCAGAGTTCTTGGGGGTC...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTAGACCCCCAAGAACTCTaGTGTTTGTTTCGAAGACTG +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLDPQEL*CLFRRL
Trigger: CAGTCTTCGAAACAAACATCAGAGTTCTTGGGGGTC...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTATATGGTCGCTCCTGTaGATCGACTCAGTGCAGCAA +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLIWSLL*IDSVQQ
Trigger: TTGCTGCACTGAGTCGATTCACAGGAGCGACCATAT...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCACCCAGTCTCCAGTATaGATATTGATAGTCACGCCT +
Preference number: 4 (lower is better)
Translates to: VSSNTACSRFLWWLLTPVTQSPV*ILIVTP
Trigger: AGGCGTGACTATCAATATTCATACTGGAGACTGGGT...GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCACCCAGTCTCCAGTATaGATATTGATAGTCACGCCT +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSTQSPV*ILIVTP
Trigger: AGGCGTGACTATCAATATTCATACTGGAGACTGGGT...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCGGTTGTGTTCTTCTTTaGGATGCTTCGGTTTGTGGT +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSGCVLL*DASVCG
Trigger: ACCACAAACCGAAGCATCTCAAAGAAGAACACAACC...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAATGGCGCCAGCATTCTaGATGTTGCGTGCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTMAPAF*MLRAFS
Trigger: AGAAAAGGCACGCAACATTCAGAATGCTGGCGCCAT...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTAACAGCATGGGGATCTTaGTGTCGTCTGTGTCCTTCC +
Preference number: 4 (lower is better)
Translates to: FQWSALTQRAPGSYGGYLTAWGS*CRLCPS
Trigger: GGAAGGACACAGACGACATCAAGATCCCCATGCTGT...TAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCTCACGCCTACTAAATTaGTACTTCGCTGTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: TYPSQNALEQCSEPPRRASRLLN*YFAVFS
Trigger: AGAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGA...GGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAATTGGTTTGTGGATATaGACATCAAGTAGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPIGLWI*TSSRRG
Trigger: ACCTCTCCTACTTGATGTGCATATCCACAAACCAAT...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAATATGGTTTACTGCTTaGAACAAATCCTCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: AMLRASQESLLGTGWVSQIWFTA*NKSSCL
Trigger: GAGACACGAGGATTTGTTGCAAGCAGTAAACCATAT...TTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACACCTTTTCTGCAAACATaGACTGTCCTCTTTGTATCA +
Preference number: 4 (lower is better)
Translates to: LRASQESLLGTGWVSQTTPFLQT*TVLFVS
Trigger: TGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGG...TGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAATTCTGAATGTTGCGTaGCTTTTCTGCAAACATGCA +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPILNVA*LFCKHA
Trigger: TGCATGTTTGCAGAAAAGGCACGCAACATTCAGAAT...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp CAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACAGCATTCTGAATGTTaGGTGCCTTTTCTGCAAACA +
Preference number: 4 (lower is better)
Translates to: QCSEPPRRACLVQGGCHKQHSEC*VPFLQT
Trigger: TGTTTGCAGAAAAGGCACGCAACATTCAGAATGCTG...TTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTTCCCGTCCTGGCTTCTaGTTTTCTGATGCCAAACTT +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGSRPGF*FSDAKL
Trigger: AAGTTTGGCATCAGAAAACCAGAAGCCAGGACGGGA...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACATTCAGCATTGGTTTGTaGATATGCACATCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: LRASQESLLGTGWVSQTTFSIGL*ICTSSR
Trigger: CCTACTTGATGTGCATATCCACAAACCAATGCTGAA...TGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTTCTCGTGGTTTTCGGTaGACCCAGATATCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGSRGFR*TQISVQ
Trigger: CTGAACAGATATCTGGGTCCACCGAAAACCACGAGA...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCAACATTTCCAGGACTTaGTTTCCAAGCTTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: VSSNTACSRFLWWLLTPVNISRT*FPSFCF
Trigger: GAAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTT...GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTGGTATAACATTTCGTaGGTTTCAATAGCAGGTCTA +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQWYNIS*VSIAGL
Trigger: TAGACCTGCTATTGAAACTCACGAAATGTTATACCA...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCTGGTATAACATTTCGTaGGTTTCAATAGCAGGTCTA +
Preference number: 4 (lower is better)
Translates to: TYPSQNALEQCSEPPRRAWYNIS*VSIAGL
Trigger: TAGACCTGCTATTGAAACTCACGAAATGTTATACCA...GGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAAAGCGGTAACAGATaGGCTTCTGTTGTAAAGATA +
Preference number: 4 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNQSGNR*ASVVKI
Trigger: TATCTTTACAACAGAAGCTCATCTGTTACCGCTTTG...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCGGTTCACGGATGCTCTaGGCATACAATGGATCATTA +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFGSRML*AYNGSL
Trigger: TAATGATCCATTGTATGCTCAGAGCATCCGTGAACC...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACTATCATCTCCTGCATaGACCGTAACCCATCTTCAG +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTLSSPA*TVTHLQ
Trigger: CTGAAGATGGGTTACGGTTCATGCAGGAGATGATAG...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTAATGGCGCCAGCATTCTaGATGTTGCGTGCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: FQWSALTQRAPGSYGGYLMAPAF*MLRAFS
Trigger: AGAAAAGGCACGCAACATTCAGAATGCTGGCGCCAT...TAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGATCTTCCTCAGTTTCTaGTTGTTCTTGAACTTGGTT +
Preference number: 4 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQIFLSF*LFLNLV
Trigger: AACCAAGTTCAAGAACAATCAGAAACTGAGGAAGAT...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAATCTTCCTCAGTTTCTaGTTGTTCTTGAACTTGGTT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPIFLSF*LFLNLV
Trigger: AACCAAGTTCAAGAACAATCAGAAACTGAGGAAGAT...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCATCTTCCTCAGTTTCTaGTTGTTCTTGAACTTGGTT +
Preference number: 4 (lower is better)
Translates to: TYPSQNALEQCSEPPRRAIFLSF*LFLNLV
Trigger: AACCAAGTTCAAGAACAATCAGAAACTGAGGAAGAT...GGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCATCTTCAGCATCAATTaGACTAGCAGCCCCCATCTT +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFIFSIN*TSSPHL
Trigger: AAGATGGGGGCTGCTAGTTCAATTGATGCTGAAGAT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000187951.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCTCAAGGGTTCACGGATaGTCTGAGCATACAATGGAT +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFSRVHG*SEHTMD
Trigger: ATCCATTGTATGCTCAGAGCATCCGTGAACCCTTGA...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCCATTATATGGTTTACTaGTTGCAACAAATCCTCGTG +
Preference number: 4 (lower is better)
Translates to: TYPSQNALEQCSEPPRRAHYMVY*LQQILV
Trigger: CACGAGGATTTGTTGCAAGCAGTAAACCATATAATG...GGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACGAGAGCATCTGCTCTaGGCTCTGATTCTGAGAATC +
Preference number: 4 (lower is better)
Translates to: FQWSALTQRAPGSYGGYLREHLL*ALILRI
Trigger: GATTCTCAGAATCAGAGCGCAGAGCAGATGCTCTCG...TAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTTCCCGTCCTGGCTTCTaGTTTTCTGATGCCAAACTT +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLSRPGF*FSDAKL
Trigger: AAGTTTGGCATCAGAAAACCAGAAGCCAGGACGGGA...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTTCCCGTCCTGGCTTCTaGTTTTCTGATGCCAAACTT +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRSRPGF*FSDAKL
Trigger: AAGTTTGGCATCAGAAAACCAGAAGCCAGGACGGGA...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTTCAGCATTGGTTTGTaGATATGCACATCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: GQFQWSALTQRAPGSYGGFSIGL*ICTSSR
Trigger: CCTACTTGATGTGCATATCCACAAACCAATGCTGAA...GCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACATCATTTTCAGAAGATaGCTGGTCTTCATTTTCCAT +
Preference number: 4 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHIIFRR*LVFIFH
Trigger: ATGGAAAATGAAGACCAGCCATCTTCTGAAAATGAT...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp CGAGATGCCACAATACTCGCTCAAATCTTCCCCAAGCCCAAGGCAGTGAAGCTTACCCAGTCTCCAGTATaGATATTGATAGTCACGCCT +
Preference number: 4 (lower is better)
Translates to: RDATILAQIFPKPKAVKLTQSPV*ILIVTP
Trigger: AGGCGTGACTATCAATATTCATACTGGAGACTGGGT...AAGCTTCACTGCCTTGGGCTTGGGGAAGATTTGAGCGAGTATTGTGGCATCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR TCA 90 bp CGAGATGCCACAATACTCGCTCAAATCTTCCCCAAGCCCAAGGCAGTGAAGCTTGGTTCACGGATGCTCTaGGCATACAATGGATCATTA +
Preference number: 4 (lower is better)
Translates to: RDATILAQIFPKPKAVKLGSRML*AYNGSL
Trigger: TAATGATCCATTGTATGCTCAGAGCATCCGTGAACC...AAGCTTCACTGCCTTGGGCTTGGGGAAGATTTGAGCGAGTATTGTGGCATCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCATTGGTTTGTGGATATaGACATCAAGTAGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSIGLWI*TSSRRG
Trigger: ACCTCTCCTACTTGATGTGCATATCCACAAACCAAT...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTTCAAGGGTTCACGGATaGTCTGAGCATACAATGGAT +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRSRVHG*SEHTMD
Trigger: ATCCATTGTATGCTCAGAGCATCCGTGAACCCTTGA...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCATATGGTTTACTGCTTaGAACAAATCCTCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: VSTLDGAVSVVSSNTACSIWFTA*NKSSCL
Trigger: GAGACACGAGGATTTGTTGCAAGCAGTAAACCATAT...GGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACAGCATTCTGAATGTTaGGTGCCTTTTCTGCAAACA +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLQHSEC*VPFLQT
Trigger: TGTTTGCAGAAAAGGCACGCAACATTCAGAATGCTG...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACTCCATCATTTCAAATaGTTCTATGTCTTCATTCCA +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPLHHFK*FYVFIP
Trigger: TGGAATGAAGACATAGAAGCATTTGAAATGATGGAG...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GCAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAGCTCTGAGCATACAATaGATCATTAGGAAAAAGAAT +
Preference number: 4 (lower is better)
Translates to: AMLRASQESLLGTGWVSQALSIQ*IIRKKN
Trigger: ATTCTTTTTCCTAATGATCCATTGTATGCTCAGAGC...TTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATGCATGTTGGACCAGCTaGACTCGCCCATCTTTGAGG +
Preference number: 4 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNACWTS*TRPSLR
Trigger: CCTCAAAGATGGGCGAGTCCAGCTGGTCCAACATGC...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR CCA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAATCATTTTCAGAAGATaGCTGGTCTTCATTTTCCAT +
Preference number: 4 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPIIFRR*LVFIFH
Trigger: ATGGAAAATGAAGACCAGCCATCTTCTGAAAATGAT...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTAACATTTCCAGGACTTaGTTTCCAAGCTTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRNISRT*FPSFCF
Trigger: GAAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTT...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ATTTATCACCAAACAACAAAACCCAACGACAGTAGTGTTACAGCACCTGTTAGTGGCCGCTGGTGGTGTTaGAAGCTGGCAGGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: IYHQTTKPNDSSVTAPVSGRWWC*KLAGAC
Trigger: ACAAGCTCCTGCCAGCTTTCAACACCACCAGCGGCC...ACTAACAGGTGCTGTAACACTACTGTCGTTGGGTTTTGTTGTTTGGTGATAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR TCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTATGGTATAACATTTCGTaGGTTTCAATAGCAGGTCTA +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLWYNIS*VSIAGL
Trigger: TAGACCTGCTATTGAAACTCACGAAATGTTATACCA...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTTTCAGCCAAGAAGAATaGATCCATTCTGTCCTCATG +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRFSQEE*IHSVLM
Trigger: CATGAGGACAGAATGGATTCATTCTTCTTGGCTGAA...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTAGGTTCACGGATGCTCTaGGCATACAATGGATCATTA +
Preference number: 4 (lower is better)
Translates to: FQWSALTQRAPGSYGGYLGSRML*AYNGSL
Trigger: TAATGATCCATTGTATGCTCAGAGCATCCGTGAACC...TAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCAGGGTTAGTGAGCTCTaGACAACCATTATATGGTTT +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFRVSEL*TTIIWF
Trigger: AAACCATATAATGGTTGTTCAGAGCTCACTAACCCT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTAGGGTTAGTGAGCTCTaGACAACCATTATATGGTTT +
Preference number: 4 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGRVSEL*TTIIWF
Trigger: AAACCATATAATGGTTGTTCAGAGCTCACTAACCCT...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACGGAGACGCCTCTGAGTaGGAATCTGCAGGGTGTTCA +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYGDASE*ESAGCS
Trigger: TGAACACCCTGCAGATTCTCACTCAGAGGCGTCTCC...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTAATCTTCAGCATCAATTaGACTAGCAGCCCCCATCTT +
Preference number: 4 (lower is better)
Translates to: FQWSALTQRAPGSYGGYLIFSIN*TSSPHL
Trigger: AAGATGGGGGCTGCTAGTTCAATTGATGCTGAAGAT...TAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000187951.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp CAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACATGTTCCATATAGTTaGCATAAGCATGATCAAACA +
Preference number: 4 (lower is better)
Translates to: QCSEPPRRACLVQGGCHKHVPYS*HKHDQT
Trigger: TGTTTGATCATGCTTATGGCAACTATATGGAACATG...TTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ATGGATGGAGACTCAGTTAGAATGTTGTGTTCTGACGCTGAACGTATTCCTCTTACTCGAGGATCAAGGTaGCTGCACAGGCTGTACAGG +
Preference number: 4 (lower is better)
Translates to: MDGDSVRMLCSDAERIPLTRGSR*LHRLYR
Trigger: CCTGTACAGCCTGTGCAGGCACCTTGATCCTCGAGT...AAGAGGAATACGTTCAGCGTCAGAACACAACATTCTAACTGAGTCTCCATCCAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACACTCGAGGATCAAGGTaGCTGCACAGGCTGTACAGG +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYTRGSR*LHRLYR
Trigger: CCTGTACAGCCTGTGCAGGCACCTTGATCCTCGAGT...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCTCACGCCTACTAAATTaGTACTTCGCTGTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFSRLLN*YFAVFS
Trigger: AGAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGA...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCATTGGTTTGTGGATATaGACATCAAGTAGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFIGLWI*TSSRRG
Trigger: ACCTCTCCTACTTGATGTGCATATCCACAAACCAAT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCATATGGTTTACTGCTTaGAACAAATCCTCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFIWFTA*NKSSCL
Trigger: GAGACACGAGGATTTGTTGCAAGCAGTAAACCATAT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCCATTATATGGTTTACTaGTTGCAACAAATCCTCGTG +
Preference number: 4 (lower is better)
Translates to: VSSNTACSRFLWWLLTPVHYMVY*LQQILV
Trigger: CACGAGGATTTGTTGCAAGCAGTAAACCATATAATG...GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACCTTTTCTGCAAACATaGACTGTCCTCTTTGTATCA +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLPFLQT*TVLFVS
Trigger: TGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGG...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCATTCTGAATGTTGCGTaGCTTTTCTGCAAACATGCA +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFILNVA*LFCKHA
Trigger: TGCATGTTTGCAGAAAAGGCACGCAACATTCAGAAT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAAAGCGGTAACAGATaGGCTTCTGTTGTAAAGATA +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTQSGNR*ASVVKI
Trigger: TATCTTTACAACAGAAGCTCATCTGTTACCGCTTTG...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACAGATCCAGCCCAAACTaGGCTGGTCCAGCAGTTAAG +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYRSSPN*AGPAVK
Trigger: CTTAACTGCTGGACCAGCTCAGTTTGGGCTGGATCT...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTAGGGTTAGTGAGCTCTaGACAACCATTATATGGTTT +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRRVSEL*TTIIWF
Trigger: AAACCATATAATGGTTGTTCAGAGCTCACTAACCCT...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GAATTACTTAGGCTGAGCTTTCTTATGATGGATCTGGCATGGAGTCTGGTGAGAATGGCGCCAGCATTCTaGATGTTGCGTGCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: ELLRLSFLMMDLAWSLVRMAPAF*MLRAFS
Trigger: AGAAAAGGCACGCAACATTCAGAATGCTGGCGCCAT...TCTCACCAGACTCCATGCCAGATCCATCATAAGAAAGCTCAGCCTAAGTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR TCA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTAATCTTCCTCAGTTTCTaGTTGTTCTTGAACTTGGTT +
Preference number: 4 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLIFLSF*LFLNLV
Trigger: AACCAAGTTCAAGAACAATCAGAAACTGAGGAAGAT...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACATGTTCCATATAGTTaGCATAAGCATGATCAAACA +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLHVPYS*HKHDQT
Trigger: TGTTTGATCATGCTTATGGCAACTATATGGAACATG...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTTCACGCCTACTAAATTaGTACTTCGCTGTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLSRLLN*YFAVFS
Trigger: AGAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGA...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCATTATATGGTTTACTaGTTGCAACAAATCCTCGTG +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFHYMVY*LQQILV
Trigger: CACGAGGATTTGTTGCAAGCAGTAAACCATATAATG...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAATTCTGAATGTTGCGTaGCTTTTCTGCAAACATGCA +
Preference number: 4 (lower is better)
Translates to: RACESPLWMGQFQWSALTILNVA*LFCKHA
Trigger: TGCATGTTTGCAGAAAAGGCACGCAACATTCAGAAT...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp TTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACAGCATTCTGAATGTTaGGTGCCTTTTCTGCAAACA +
Preference number: 4 (lower is better)
Translates to: FQWSALTQRAPGSYGGYLQHSEC*VPFLQT
Trigger: TGTTTGCAGAAAAGGCACGCAACATTCAGAATGCTG...TAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACTCCATCATTTCAAATaGTTCTATGTCTTCATTCCA +
Preference number: 4 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLLHHFK*FYVFIP
Trigger: TGGAATGAAGACATAGAAGCATTTGAAATGATGGAG...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTTTCAGCATTGGTTTGTaGATATGCACATCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLFSIGL*ICTSSR
Trigger: CCTACTTGATGTGCATATCCACAAACCAATGCTGAA...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACTGCGAACATCCTTCATaGCAGCAAACCCGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYCEHPS*QQTRKA
Trigger: TGCCTTGCGGGTTTGCTGCCATGAAGGATGTTCGCA...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCACCAGAGTGCGAACATCCTTCATaGCAGCAAACCCGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: VGVTNHSLPLPFKYLPPECEHPS*QQTRKA
Trigger: TGCCTTGCGGGTTTGCTGCCATGAAGGATGTTCGCA...CTCTGGTGGTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTTTTTACCTTTTAATATaGCTGCTCGGTCTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: CESPLWMGQFQWSALTQRFYLLI*LLGLSL
Trigger: AAGCGAGAGACCGAGCAGCCATATTAAAAGGTAAAA...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000188145.7
3UTR CAA 72 bp TTGGGAGAGGAAAAGAAATCAAGTCGTCCTGGCCATTaGTCACTGATTGAAGCATGTAACAGCGATGCGCAG +
Preference number: 4 (lower is better)
Translates to: LGEEKKSSRPGH*SLIEACNSDAQ
Trigger: CTGCGCATCGCTGTTACATGCTTCAATCAGTGACAAATGGCCAGGACGACTTGATTTCTTTTCCTCTCCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR TCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACATATGGTCGCTCCTGTaGATCGACTCAGTGCAGCAA +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYIWSLL*IDSVQQ
Trigger: TTGCTGCACTGAGTCGATTCACAGGAGCGACCATAT...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCATGTTCCATATAGTTaGCATAAGCATGATCAAACA +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFHVPYS*HKHDQT
Trigger: TGTTTGATCATGCTTATGGCAACTATATGGAACATG...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AAGAAATCAAGTCGTCCTGGCCATTTGTCACTGATTGAAGCATGTAACAGCGATTTGTACCACTGCATGTaGTCGCCTTTCTCCTTCAGC +
Preference number: 4 (lower is better)
Translates to: KKSSRPGHLSLIEACNSDLYHCM*SPFSFS
Trigger: GCTGAAGGAGAAAGGCGAGCACATGCAGTGGTACAA...ATCGCTGTTACATGCTTCAATCAGTGACAAATGGCCAGGACGACTTGATTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp CATTCAGTACCTCAAAACCACGTTGTAGAGAAAAGTTACTGTGTAATGCCATGGCCTCATGACTCCCAGTaGGAACATCCTTCATGGCAG +
Preference number: 4 (lower is better)
Translates to: HSVPQNHVVEKSYCVMPWPHDSQ*EHPSWQ
Trigger: CTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGG...CCATGGCATTACACAGTAACTTTTCTCTACAACGTGGTTTTGAGGTACTGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CCA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATCCTTCTGTTGCTGACTaGACAGCTCTATCATCTCCT +
Preference number: 4 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNPSVAD*TALSSP
Trigger: AGGAGATGATAGAGCTGTCCAGTCAGCAACAGAAGG...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCATCATTTTCAGAAGATaGCTGGTCTTCATTTTCCAT +
Preference number: 4 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFIIFRR*LVFIFH
Trigger: ATGGAAAATGAAGACCAGCCATCTTCTGAAAATGAT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCACCAGAGCTATCATCTCCTGCATaGACCGTAACCCATCTTCAG +
Preference number: 4 (lower is better)
Translates to: VGVTNHSLPLPFKYLPPELSSPA*TVTHLQ
Trigger: CTGAAGATGGGTTACGGTTCATGCAGGAGATGATAG...CTCTGGTGGTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GAATTACTTAGGCTGAGCTTTCTTATGATGGATCTGGCATGGAGTCTGGTGAGATCAAGGGTTCACGGATaGTCTGAGCATACAATGGAT +
Preference number: 4 (lower is better)
Translates to: ELLRLSFLMMDLAWSLVRSRVHG*SEHTMD
Trigger: ATCCATTGTATGCTCAGAGCATCCGTGAACCCTTGA...TCTCACCAGACTCCATGCCAGATCCATCATAAGAAAGCTCAGCCTAAGTAATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp ATGCTGTTGGAATTTCCTAGTGAACTCAAAAGACTACTTTGTGGCAGGCAGTATACTAGCAGCTTGGATTaGATGTTGGACCAGCTGGAC +
Preference number: 4 (lower is better)
Translates to: MLLEFPSELKRLLCGRQYTSSLD*MLDQLD
Trigger: GTCCAGCTGGTCCAACATGCAATCCAAGCTGCTAGT...ATACTGCCTGCCACAAAGTAGTCTTTTGAGTTCACTAGGAAATTCCAACAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp ATGCTGTTGGAATTTCCTAGTGAACTCAAAAGACTACTTTGTGGCAGGCAGTATCGAGAGCATCTGCTCTaGGCTCTGATTCTGAGAATC +
Preference number: 4 (lower is better)
Translates to: MLLEFPSELKRLLCGRQYREHLL*ALILRI
Trigger: GATTCTCAGAATCAGAGCGCAGAGCAGATGCTCTCG...ATACTGCCTGCCACAAAGTAGTCTTTTGAGTTCACTAGGAAATTCCAACAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp CGAGATGCCACAATACTCGCTCAAATCTTCCCCAAGCCCAAGGCAGTGAAGCTTCTCCATCATTTCAAATaGTTCTATGTCTTCATTCCA +
Preference number: 4 (lower is better)
Translates to: RDATILAQIFPKPKAVKLLHHFK*FYVFIP
Trigger: TGGAATGAAGACATAGAAGCATTTGAAATGATGGAG...AAGCTTCACTGCCTTGGGCTTGGGGAAGATTTGAGCGAGTATTGTGGCATCTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACTCCCGTCCTGGCTTCTaGTTTTCTGATGCCAAACTT +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYSRPGF*FSDAKL
Trigger: AAGTTTGGCATCAGAAAACCAGAAGCCAGGACGGGA...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AGGCTGAGCTTTCTTATGATGGATCTGGCATGGAGTCTGGTGAGAGAACAAACGTTCAGCATTGGTTTGTaGATATGCACATCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: RLSFLMMDLAWSLVREQTFSIGL*ICTSSR
Trigger: CCTACTTGATGTGCATATCCACAAACCAATGCTGAA...CGTTTGTTCTCTCACCAGACTCCATGCCAGATCCATCATAAGAAAGCTCAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CCA 90 bp GTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCACCAGAGTGCTTCGGTTTGTGGTaGAAAGCCAAAGCGGTAACA +
Preference number: 4 (lower is better)
Translates to: VGVTNHSLPLPFKYLPPECFGLW*KAKAVT
Trigger: TGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCA...CTCTGGTGGTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTGCTCTGAGCATACAATaGATCATTAGGAAAAAGAAT +
Preference number: 4 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLALSIQ*IIRKKN
Trigger: ATTCTTTTTCCTAATGATCCATTGTATGCTCAGAGC...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACGGTTGTGTTCTTCTTTaGGATGCTTCGGTTTGTGGT +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYGCVLL*DASVCG
Trigger: ACCACAAACCGAAGCATCTCAAAGAAGAACACAACC...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCACCAGAGAGCTCTATCATCTCCTaGATGAACCGTAACCCATCT +
Preference number: 4 (lower is better)
Translates to: VGVTNHSLPLPFKYLPPESSIIS*MNRNPS
Trigger: AGATGGGTTACGGTTCATGCAGGAGATGATAGAGCT...CTCTGGTGGTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACAATTTTTCCCATCACTaGCTCAGGGTTAGTGAGCTC +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYNFSHH*LRVSEL
Trigger: GAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATT...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp AAAACAGGTATTTATTCCCTTATAAAAGGGCACGCTTACCTGGGACCTAAGACATGCTTCGGTTTGTGGTaGAAAGCCAAAGCGGTAACA +
Preference number: 4 (lower is better)
Translates to: KTGIYSLIKGHAYLGPKTCFGLW*KAKAVT
Trigger: TGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCA...TGTCTTAGGTCCCAGGTAAGCGTGCCCTTTTATAAGGGAATAAATACCTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CCA 90 bp CATTCAGTACCTCAAAACCACGTTGTAGAGAAAAGTTACTGTGTAATGCCATGGTCTCGTGGTTTTCGGTaGACCCAGATATCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: HSVPQNHVVEKSYCVMPWSRGFR*TQISVQ
Trigger: CTGAACAGATATCTGGGTCCACCGAAAACCACGAGA...CCATGGCATTACACAGTAACTTTTCTCTACAACGTGGTTTTGAGGTACTGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
3UTR CAA 72 bp AGAGTAGTCATAGCTTCCCCCAACGGGAAGTTGATATaGCAACATTACAGTTTCTCCTTCTCTATTTACCCC +
Preference number: 4 (lower is better)
Translates to: RVVIASPNGKLI*QHYSFSFSIYP
Trigger: GGGGTAAATAGAGAAGGAGAAACTGTAATGTTGCAATATCAACTTCCCGTTGGGGGAAGCTATGACTACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR TCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACAACATTTCCAGGACTTaGTTTCCAAGCTTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYNISRT*FPSFCF
Trigger: GAAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTT...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACTTCAGCCAAGAAGAATaGATCCATTCTGTCCTCATG +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYFSQEE*IHSVLM
Trigger: CATGAGGACAGAATGGATTCATTCTTCTTGGCTGAA...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp GTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCACCAGAGTTCAGCCAAGAAGAATaGATCCATTCTGTCCTCATG +
Preference number: 4 (lower is better)
Translates to: VGVTNHSLPLPFKYLPPEFSQEE*IHSVLM
Trigger: CATGAGGACAGAATGGATTCATTCTTCTTGGCTGAA...CTCTGGTGGTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AAAACAGGTATTTATTCCCTTATAAAAGGGCACGCTTACCTGGGACCTAAGACAAGCTCTATCATCTCCTaGATGAACCGTAACCCATCT +
Preference number: 4 (lower is better)
Translates to: KTGIYSLIKGHAYLGPKTSSIIS*MNRNPS
Trigger: AGATGGGTTACGGTTCATGCAGGAGATGATAGAGCT...TGTCTTAGGTCCCAGGTAAGCGTGCCCTTTTATAAGGGAATAAATACCTGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATATGGTTTACTGCTTaGAACAAATCCTCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNIWFTA*NKSSCL
Trigger: GAGACACGAGGATTTGTTGCAAGCAGTAAACCATAT...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
3UTR CAA 72 bp CCATCTAGAGTAGTCATAGCTTCCCCCAACGGGAAGTaGATATTGCAACATTACAGTTTCTCCTTCTCTATT +
Preference number: 4 (lower is better)
Translates to: PSRVVIASPNGK*ILQHYSFSFSI
Trigger: AATAGAGAAGGAGAAACTGTAATGTTGCAATATCAACTTCCCGTTGGGGGAAGCTATGACTACTCTAGATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR TCA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATTGGTATAACATTTCGTaGGTTTCAATAGCAGGTCTA +
Preference number: 4 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNWYNIS*VSIAGL
Trigger: TAGACCTGCTATTGAAACTCACGAAATGTTATACCA...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACATTGGTTTGTGGATATaGACATCAAGTAGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYIGLWI*TSSRRG
Trigger: ACCTCTCCTACTTGATGTGCATATCCACAAACCAAT...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCCTTTTCTGCAAACATaGACTGTCCTCTTTGTATCA +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYPFLQT*TVLFVS
Trigger: TGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGG...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR TCA 90 bp CATTCAGTACCTCAAAACCACGTTGTAGAGAAAAGTTACTGTGTAATGCCATGGCAAAGCGGTAACAGATaGGCTTCTGTTGTAAAGATA +
Preference number: 4 (lower is better)
Translates to: HSVPQNHVVEKSYCVMPWQSGNR*ASVVKI
Trigger: TATCTTTACAACAGAAGCTCATCTGTTACCGCTTTG...CCATGGCATTACACAGTAACTTTTCTCTACAACGTGGTTTTGAGGTACTGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR GCA 90 bp GTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCACCAGAGCATTATATGGTTTACTaGTTGCAACAAATCCTCGTG +
Preference number: 4 (lower is better)
Translates to: VGVTNHSLPLPFKYLPPEHYMVY*LQQILV
Trigger: CACGAGGATTTGTTGCAAGCAGTAAACCATATAATG...CTCTGGTGGTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp AAAACAGGTATTTATTCCCTTATAAAAGGGCACGCTTACCTGGGACCTAAGACACCTTTTCTGCAAACATaGACTGTCCTCTTTGTATCA +
Preference number: 4 (lower is better)
Translates to: KTGIYSLIKGHAYLGPKTPFLQT*TVLFVS
Trigger: TGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGG...TGTCTTAGGTCCCAGGTAAGCGTGCCCTTTTATAAGGGAATAAATACCTGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CCA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATGCTCTGAGCATACAATaGATCATTAGGAAAAAGAAT +
Preference number: 4 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNALSIQ*IIRKKN
Trigger: ATTCTTTTTCCTAATGATCCATTGTATGCTCAGAGC...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR GCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACCATGTTCCATATAGTTaGCATAAGCATGATCAAACA +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYHVPYS*HKHDQT
Trigger: TGTTTGATCATGCTTATGGCAACTATATGGAACATG...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATATCTACGCTCTGAGCATACAATaGATCATTAGGAAAAAGAAT +
Preference number: 4 (lower is better)
Translates to: GTGWVSQTTVYLFLLNIYALSIQ*IIRKKN
Trigger: ATTCTTTTTCCTAATGATCCATTGTATGCTCAGAGC...GTAGATATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CCA 90 bp GTAATTAAGCGTCAGCTATTTTGGCAGCTTTGCAATGAAATAAAACGAAGCACAATCATTTTCAGAAGATaGCTGGTCTTCATTTTCCAT +
Preference number: 4 (lower is better)
Translates to: VIKRQLFWQLCNEIKRSTIIFRR*LVFIFH
Trigger: ATGGAAAATGAAGACCAGCCATCTTCTGAAAATGAT...TGTGCTTCGTTTTATTTCATTGCAAAGCTGCCAAAATAGCTGACGCTTAATTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS TCA 90 bp GGCCAACACCAGACAGAGCGCGGCCGTCGCTGCCACCAGGCTCCATaGCGCTCGCTGGGGGACCCGGCACCCACAGCCCCGGCAGCCGCC +
Preference number: 5 (lower is better)
Translates to: GQHQTERGRRCHQAP*RSLGDPAPTAPAAA
Trigger: GGCGGCTGCCGGGGCTGTGGGTGCCGGGTCCCCCAGCGAGCGTCATGGAGCCTGGTGGCAGCGACGGCCGCGCTCTGTCTGGTGTTGGCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 90 bp TCTCTTCCCTACTCATGGGCGCGGCCCCTGCCGTGCACACGGACGTaGCCAACACCAGACAGAGCGCGGCCGTCGCTGCCACCAGGCTCC +
Preference number: 5 (lower is better)
Translates to: SLPYSWARPLPCTRT*PTPDRARPSLPPGS
Trigger: GGAGCCTGGTGGCAGCGACGGCCGCGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 90 bp CAAGCTTCTGCTTCTCTTCCCTACTCATGGGCGCGGCCCCTGCCGTaGACACGGACGTGGCCAACACCAGACAGAGCGCGGCCGTCGCTG +
Preference number: 5 (lower is better)
Translates to: QASASLPYSWARPLP*TRTWPTPDRARPSL
Trigger: CAGCGACGGCCGCGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGCAGAAGCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 90 bp ATTTCCAAGCTTCTGCTTCTCTTCCCTACTCATGGGCGCGGCCCCTaGCGTGCACACGGACGTGGCCAACACCAGACAGAGCGCGGCCGT +
Preference number: 5 (lower is better)
Translates to: ISKLLLLFPTHGRGP*RAHGRGQHQTERGR
Trigger: ACGGCCGCGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGCAGAAGCTTGGAAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 90 bp TTTCCAGGACTTGATTTCCAAGCTTCTGCTTCTCTTCCCTACTCATaGGCGCGGCCCCTGCCGTGCACACGGACGTGGCCAACACCAGAC +
Preference number: 5 (lower is better)
Translates to: FPGLDFQASASLPYS*ARPLPCTRTWPTPD
Trigger: GTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGCAGAAGCTTGGAAATCAAGTCCTGGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 90 bp AGCTGCTTTGCCATGTGGAGGAGCTCGTCATTGTACCACTGCATGTaGTCGCCTTTCTCCTTCAGCATGATGGCCAGCGAGTGTCCGCCC +
Preference number: 5 (lower is better)
Translates to: SCFAMWRSSSLYHCM*SPFSFSMMASECPP
Trigger: GGGCGGACACTCGCTGGCCATCATGCTGAAGGAGAAAGGCGAGCACATGCAGTGGTACAATGACGAGCTCCTCCACATGGCAAAGCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGCTGCTGCTCCTTCTGTaGCTGACTGGACAGCTCTAT +
Preference number: 5 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQLLLLL*LTGQLY
Trigger: ATAGAGCTGTCCAGTCAGCAACAGAAGGAGCAGCAG...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp GCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAACAGCATGGGGATCTaGATGTCGTCTGTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: AQSLPGEPAWYRVGVTNHNSMGI*MSSVSF
Trigger: GAAGGACACAGACGACATCAAGATCCCCATGCTGTT...GTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCTGCTGCTCCTTCTGTaGCTGACTGGACAGCTCTAT +
Preference number: 5 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNLLLLL*LTGQLY
Trigger: ATAGAGCTGTCCAGTCAGCAACAGAAGGAGCAGCAG...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp TGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCAAACAGCATGGGGATCTaGATGTCGTCTGTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: CSEPPRRACLVQGGCHKPNSMGI*MSSVSF
Trigger: GAAGGACACAGACGACATCAAGATCCCCATGCTGTT...TGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAAACAGCATGGGGATCTaGATGTCGTCTGTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: LRASQESLLGTGWVSQTTNSMGI*MSSVSF
Trigger: GAAGGACACAGACGACATCAAGATCCCCATGCTGTT...TGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp ACTTACCCCAGTCAGAACGCGCTTGAGCAATGCTCAGAGCCTCCCAGGAGAGCCTCCGAGCGTTCAGCATaGGTTTGTGGATATGCACAT +
Preference number: 5 (lower is better)
Translates to: TYPSQNALEQCSEPPRRASERSA*VCGYAH
Trigger: ATGTGCATATCCACAAACCAATGCTGAACGCTCGGA...GGCTCTCCTGGGAGGCTCTGAGCATTGCTCAAGCGCGTTCTGACTGGGGTAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTCCGAGCGTTCAGCATaGGTTTGTGGATATGCACAT +
Preference number: 5 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQSERSA*VCGYAH
Trigger: ATGTGCATATCCACAAACCAATGCTGAACGCTCGGA...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACTGCTGCTCCTTCTGTaGCTGACTGGACAGCTCTAT +
Preference number: 5 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLLLLLL*LTGQLY
Trigger: ATAGAGCTGTCCAGTCAGCAACAGAAGGAGCAGCAG...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 90 bp TGTCGCTACTGCTCCCCTCGTTGTCATCGATCACAATGCCACCGATaGCGCCAGCATTCTGAATGTTGCGTGCCTTTTCTGCAAACATGC +
Preference number: 5 (lower is better)
Translates to: CRYCSPRCHRSQCHR*RQHSECCVPFLQTC
Trigger: GCATGTTTGCAGAAAAGGCACGCAACATTCAGAATGCTGGCGCCATCGGTGGCATTGTGATCGATGACAACGAGGGGAGCAGTAGCGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGGCGTTCAGCATTGGTTaGTGGATATGCACATCAAGT +
Preference number: 5 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQAFSIG*WICTSS
Trigger: ACTTGATGTGCATATCCACAAACCAATGCTGAACGC...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACTCCGAGCGTTCAGCATaGGTTTGTGGATATGCACAT +
Preference number: 5 (lower is better)
Translates to: NAQSLPGEPAWYRVGVTNSERSA*VCGYAH
Trigger: ATGTGCATATCCACAAACCAATGCTGAACGCTCGGA...GTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp CTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAAGGTTGTGTTCTTCTTaGAGATGCTTCGGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: LRASQESLLGTGWVSQTTRLCSS*RCFGLW
Trigger: CCACAAACCGAAGCATCTCAAAGAAGAACACAACCT...TGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTAATGATGCTGCCTTCCTaGCTGAACAGGAACAGCATG +
Preference number: 5 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLMMLPS*LNRNSM
Trigger: CATGCTGTTCCTGTTCAGCAAGGAAGGCAGCATCAT...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp TCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGAAACATTTCCAGGACTaGATTTCCAAGCTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: SEPPRRACLVQGGCHKPQKHFQD*ISKLLL
Trigger: AAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTTT...CTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTAGTCACGCCTACTAAATaGCTACTTCGCTGTCTTTTC +
Preference number: 5 (lower is better)
Translates to: SLPGEPAWYRVGVTNHSLVTPTK*LLRCLF
Trigger: GAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGAC...TAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp GTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTACCCCAGTCGCGTTCAGCATTGGTTaGTGGATATGCACATCAAGT +
Preference number: 5 (lower is better)
Translates to: VSSNTACSRFLWWLLTPVAFSIG*WICTSS
Trigger: ACTTGATGTGCATATCCACAAACCAATGCTGAACGC...GACTGGGGTAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp CAATGCTCAGAGCCTCCCAGGAGAGCCTGCTTGGTACAGGGTGGGTGTCACAAACTGTGTATTCTGAGGTaGTGTTCTTCTTTGAGATGC +
Preference number: 5 (lower is better)
Translates to: QCSEPPRRACLVQGGCHKLCILR*CSSLRC
Trigger: GCATCTCAAAGAAGAACACAACCTCAGAATACACAG...TTTGTGACACCCACCCTGTACCAAGCAGGCTCTCCTGGGAGGCTCTGAGCATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAAACAGCATGGGGATCTaGATGTCGTCTGTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: RACESPLWMGQFQWSALTNSMGI*MSSVSF
Trigger: GAAGGACACAGACGACATCAAGATCCCCATGCTGTT...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp CGAGATGCCACAATACTCGCTCAAATCTTCCCCAAGCCCAAGGCAGTGAAGCTTATGATGCTGCCTTCCTaGCTGAACAGGAACAGCATG +
Preference number: 5 (lower is better)
Translates to: RDATILAQIFPKPKAVKLMMLPS*LNRNSM
Trigger: CATGCTGTTCCTGTTCAGCAAGGAAGGCAGCATCAT...AAGCTTCACTGCCTTGGGCTTGGGGAAGATTTGAGCGAGTATTGTGGCATCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CAA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTATGATGCTGCCTTCCTaGCTGAACAGGAACAGCATG +
Preference number: 5 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLMMLPS*LNRNSM
Trigger: CATGCTGTTCCTGTTCAGCAAGGAAGGCAGCATCAT...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAATGATGCTGCCTTCCTaGCTGAACAGGAACAGCATG +
Preference number: 5 (lower is better)
Translates to: RACESPLWMGQFQWSALTMMLPS*LNRNSM
Trigger: CATGCTGTTCCTGTTCAGCAAGGAAGGCAGCATCAT...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 90 bp TCTTGCATATTCCTCAAATATGGTCGCTCCTGTGAATCGACTCAGTaGAGCAAACTCGAGGATCAAGGTGCCTGCACAGGCTGTACAGGT +
Preference number: 5 (lower is better)
Translates to: SCIFLKYGRSCESTQ*SKLEDQGACTGCTG
Trigger: ACCTGTACAGCCTGTGCAGGCACCTTGATCCTCGAGTTTGCTGCACTGAGTCGATTCACAGGAGCGACCATATTTGAGGAATATGCAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 90 bp GCAAGCAATGCATCCATCCAGGTCCGAGCGTTCAGCATTGGTTTGTaGATATGCACATCAAGTAGGAGAGGTGGCTGGCTTATATACCTC +
Preference number: 5 (lower is better)
Translates to: ASNASIQVRAFSIGL*ICTSSRRGGWLIYL
Trigger: GAGGTATATAAGCCAGCCACCTCTCCTACTTGATGTGCATATCCACAAACCAATGCTGAACGCTCGGACCTGGATGGATGCATTGCTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp GCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTAGTCACGCCTACTAAATaGCTACTTCGCTGTCTTTTC +
Preference number: 5 (lower is better)
Translates to: AVSVVSSNTACSRFLWWLVTPTK*LLRCLF
Trigger: GAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGAC...TAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp ATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTAGGTTGTGTTCTTCTTaGAGATGCTTCGGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: MGQFQWSALTQRAPGSYGRLCSS*RCFGLW
Trigger: CCACAAACCGAAGCATCTCAAAGAAGAACACAACCT...ACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATAGCTTGGATTGCATGTaGGACCAGCTGGACTCGCCC +
Preference number: 5 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNSLDCM*DQLDSP
Trigger: GGGCGAGTCCAGCTGGTCCAACATGCAATCCAAGCT...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000188145.7
CDS-3UTR CAA 90 bp TGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGTCACGCCTACTAAATaGCTACTTCGCTGTCTTTTC +
Preference number: 5 (lower is better)
Translates to: CESPLWMGQFQWSALTQRVTPTK*LLRCLF
Trigger: GAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGAC...ACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AGGGCTTGTGAGTCTCCACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACAAGGTTGTGTTCTTCTTaGAGATGCTTCGGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: RACESPLWMGQFQWSALTRLCSS*RCFGLW
Trigger: CCACAAACCGAAGCATCTCAAAGAAGAACACAACCT...TGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGTGGAGACTCACAAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp GTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTAGGTTGTGTTCTTCTTaGAGATGCTTCGGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: VSVVSSNTACSRFLWWLLRLCSS*RCFGLW
Trigger: CCACAAACCGAAGCATCTCAAAGAAGAACACAACCT...AAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 90 bp CGATGGCGCCAGCATTCTGAATGTTGCGTGCCTTTTCTGCAAACATaGACTGTCCTCTTTGTATCAAGGCAATTTTTCCCATCACTGCCT +
Preference number: 5 (lower is better)
Translates to: RWRQHSECCVPFLQT*TVLFVSRQFFPSLP
Trigger: AGGCAGTGATGGGAAAAATTGCCTTGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGGCACGCAACATTCAGAATGCTGGCGCCATCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 90 bp ATCGATCACAATGCCACCGATGGCGCCAGCATTCTGAATGTTGCGTaGCTTTTCTGCAAACATGCACTGTCCTCTTTGTATCAAGGCAAT +
Preference number: 5 (lower is better)
Translates to: IDHNATDGASILNVA*LFCKHALSSLYQGN
Trigger: ATTGCCTTGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGGCACGCAACATTCAGAATGCTGGCGCCATCGGTGGCATTGTGATCGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 90 bp CTTATCAGCCAAGTCGACTGTCTGAGAAAGCGAGAGCATCTGCTCTaGGCTCTGATTCTGAGAATCATTTTCAGAAGATGGCTGGTCTTC +
Preference number: 5 (lower is better)
Translates to: LISQVDCLRKREHLL*ALILRIIFRRWLVF
Trigger: GAAGACCAGCCATCTTCTGAAAATGATTCTCAGAATCAGAGCGCAGAGCAGATGCTCTCGCTTTCTCAGACAGTCGACTTGGCTGATAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 90 bp TGGTTATCTAAGTCTGTACATTCACCATCAAGGCTTGTAGTCTCGTaGTTTTCGGTGGACCCAGATATCTGTTCAGAGGGGGCAAAGCCA +
Preference number: 5 (lower is better)
Translates to: WLSKSVHSPSRLVVS*FSVDPDICSEGAKP
Trigger: TGGCTTTGCCCCCTCTGAACAGATATCTGGGTCCACCGAAAACCACGAGACTACAAGCCTTGATGGTGAATGTACAGACTTAGATAACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 90 bp CAGAAGATGGCTGGTCTTCATTTTCCATTTCGGGATCTTTTAATATaGCTGCTCGGTCTCTCGCTTTGTCAGAAAGGAGCACCTCCACCT +
Preference number: 5 (lower is better)
Translates to: QKMAGLHFPFRDLLI*LLGLSLCQKGAPPP
Trigger: AGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACCGAGCAGCCATATTAAAAGATCCCGAAATGGAAAATGAAGACCAGCCATCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp ACTTTGGATGGGGCAGTTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCAAACATTTCCAGGACTaGATTTCCAAGCTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: TLDGAVSVVSSNTACSRFKHFQD*ISKLLL
Trigger: AAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTTT...GAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAACTGCCCCATCCAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp AAAACAGGTATTTATTCCCTTATAAAAGGGCACGCTTACCTGGGACCTAAGACAAGCTTGGATTGCATGTaGGACCAGCTGGACTCGCCC +
Preference number: 5 (lower is better)
Translates to: KTGIYSLIKGHAYLGPKTSLDCM*DQLDSP
Trigger: GGGCGAGTCCAGCTGGTCCAACATGCAATCCAAGCT...TGTCTTAGGTCCCAGGTAAGCGTGCCCTTTTATAAGGGAATAAATACCTGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS CCA 90 bp GAGCATCTGCTCTGCGCTCTGATTCTGAGAATCATTTTCAGAAGATaGCTGGTCTTCATTTTCCATTTCGGGATCTCGGTCTCTCGCTTT +
Preference number: 5 (lower is better)
Translates to: EHLLCALILRIIFRR*LVFIFHFGISVSRF
Trigger: AAAGCGAGAGACCGAGATCCCGAAATGGAAAATGAAGACCAGCCATCTTCTGAAAATGATTCTCAGAATCAGAGCGCAGAGCAGATGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
CDS CCA 90 bp GCTTCTATGTCTTCATTCCAGTCTGCTAATATGGAGTCTATAGGCTaGGCCTTTGTACCCCAGCTGACATTAGGACTGGAATCTTCCTCA +
Preference number: 5 (lower is better)
Translates to: ASMSSFQSANMESIG*AFVPQLTLGLESSS
Trigger: TGAGGAAGATTCCAGTCCTAATGTCAGCTGGGGTACAAAGGCCCAGCCTATAGACTCCATATTAGCAGACTGGAATGAAGACATAGAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp GTTGATATTGCAACATTACAGTTTCTCCTTCTCTATTTACCCCGAGCAGTAAGCTGGAGGAGCTCGTCATaGTACCACTGCATGTGCTCG +
Preference number: 5 (lower is better)
Translates to: VDIATLQFLLLYLPRAVSWRSSS*YHCMCS
Trigger: CGAGCACATGCAGTGGTACAATGACGAGCTCCTCCA...GCTTACTGCTCGGGGTAAATAGAGAAGGAGAAACTGTAATGTTGCAATATCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS CCA 90 bp ATGAATCCATTCTGTCCTCATGACTCCCAGTGCGAACATCCTTCATaGCAGCAAACCCGCAAGGCACTCGAGCATACTTATTCAAATTTT +
Preference number: 5 (lower is better)
Translates to: MNPFCPHDSQCEHPS*QQTRKALEHTYSNF
Trigger: AAAATTTGAATAAGTATGCTCGAGTGCCTTGCGGGTTTGCTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGGACAGAATGGATTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp TTTCAGTGGTCAGCTCTAACACAGCGTGCTCCAGGTTCCTATGGTGGCTACTTAAAACATTTCCAGGACTaGATTTCCAAGCTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: FQWSALTQRAPGSYGGYLKHFQD*ISKLLL
Trigger: AAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTTT...TAAGTAGCCACCATAGGAACCTGGAGCACGCTGTGTTAGAGCTGACCACTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp ATCTCCCCTTCTGTATACTCTATGTATTACGGTTCTATCTTCTCACACCAAACTCTGCTGCTCCTTCTGTaGCTGACTGGACAGCTCTAT +
Preference number: 5 (lower is better)
Translates to: ISPSVYSMYYGSIFSHQTLLLLL*LTGQLY
Trigger: ATAGAGCTGTCCAGTCAGCAACAGAAGGAGCAGCAG...AGTTTGGTGTGAGAAGATAGAACCGTAATACATAGAGTATACAGAAGGGGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS-3UTR CAA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATCTGTGTATTCTGAGGTaGTGTTCTTCTTTGAGATGC +
Preference number: 5 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNLCILR*CSSLRC
Trigger: GCATCTCAAAGAAGAACACAACCTCAGAATACACAG...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS TCA 90 bp TATCAAGGCAATTTTTCCCATCACTGCCTCAGGGTTAGTGAGCTCTaGACAACCATTATATGGTTTACTGCTTGCAACAAATCCTCGTGT +
Preference number: 5 (lower is better)
Translates to: YQGNFSHHCLRVSEL*TTIIWFTACNKSSC
Trigger: ACACGAGGATTTGTTGCAAGCAGTAAACCATATAATGGTTGTTCAGAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATTGCCTTGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp CTGCTTGGTACAGGGTGGGTGTCACAAACCACAGTTTACCTCTTCCTTTTAAATAAACATTTCCAGGACTaGATTTCCAAGCTTCTGCTT +
Preference number: 5 (lower is better)
Translates to: LLGTGWVSQTTVYLFLLNKHFQD*ISKLLL
Trigger: AAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTTT...ATTTAAAAGGAAGAGGTAAACTGTGGTTTGTGACACCCACCCTGTACCAAGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS-3UTR CAA 90 bp GTTGATATTGCAACATTACAGTTTCTCCTTCTCTATTTACCCCGAGCAGTAAGCCTGTGTATTCTGAGGTaGTGTTCTTCTTTGAGATGC +
Preference number: 5 (lower is better)
Translates to: VDIATLQFLLLYLPRAVSLCILR*CSSLRC
Trigger: GCATCTCAAAGAAGAACACAACCTCAGAATACACAG...GCTTACTGCTCGGGGTAAATAGAGAAGGAGAAACTGTAATGTTGCAATATCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059498.12
CDS CCA 90 bp GAGCATCTGCTCTGCGCTCTGATTCTGAGAATCATTTTCAGAAGATaGCTGGTCTTCATTTTCCATTTCGGGATTACTGTTAATAATGTA +
Preference number: 5 (lower is better)
Translates to: EHLLCALILRIIFRR*LVFIFHFGITVNNV
Trigger: TACATTATTAACAGTAATCCCGAAATGGAAAATGAAGACCAGCCATCTTCTGAAAATGATTCTCAGAATCAGAGCGCAGAGCAGATGCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188145.7
CDS CCA 90 bp GCTCTGAGCATACAATGGATCATTAGGAAAAAGAATCTGAGTGTTTaGACAAGTCCAATCAAAATTACTATCATCCAGTTCTGTGTATTC +
Preference number: 5 (lower is better)
Translates to: ALSIQWIIRKKNLSV*TSPIKITIIQFCVF
Trigger: GAATACACAGAACTGGATGATAGTAATTTTGATTGGACTTGTCCAAACACTCAGATTCTTTTTCCTAATGATCCATTGTATGCTCAGAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 72 bp TACTCATGGGCGCGGCCCCTGCCGTGCACACGGACGTaGCCAACACCAGACAGAGCGCGGCCGTCGCTGCCA +
Preference number: 6 (lower is better)
Translates to: YSWARPLPCTRT*PTPDRARPSLP
Trigger: TGGCAGCGACGGCCGCGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp GCTTCTCTTCCCTACTCATGGGCGCGGCCCCTGCCGTaGACACGGACGTGGCCAACACCAGACAGAGCGCGG +
Preference number: 6 (lower is better)
Translates to: ASLPYSWARPLP*TRTWPTPDRAR
Trigger: CCGCGCTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp CTTCTGCTTCTCTTCCCTACTCATGGGCGCGGCCCCTaGCGTGCACACGGACGTGGCCAACACCAGACAGAG +
Preference number: 6 (lower is better)
Translates to: LLLLFPTHGRGP*RAHGRGQHQTE
Trigger: CTCTGTCTGGTGTTGGCCACGTCCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGCAGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp CTCGCTTTGTCAGAAAGGAGCACCTCCACCTGCTCGTaGTCGCGGATGGCGTCCAGGATGATGCTGCCTTCC +
Preference number: 6 (lower is better)
Translates to: LALSERSTSTCS*SRMASRMMLPS
Trigger: GGAAGGCAGCATCATCCTGGACGCCATCCGCGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp CGGTCTCTCGCTTTGTCAGAAAGGAGCACCTCCACCTaGTCGTGCTCGCGGATGGCGTCCAGGATGATGCTG +
Preference number: 6 (lower is better)
Translates to: RSLALSERSTST*SCSRMASRMML
Trigger: CAGCATCATCCTGGACGCCATCCGCGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 72 bp CCTGGGGTACGGAAGGCCGCTGGTGGTGTTGAAAGCTaGCAGGAGCTTGTAACCCAGCTGCTTTGCCATGTG +
Preference number: 6 (lower is better)
Translates to: PGVRKAAGGVES*QELVTQLLCHV
Trigger: CACATGGCAAAGCAGCTGGGTTACAAGCTCCTGCCAGCTTTCAACACCACCAGCGGCCTTCCGTACCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS TCA 72 bp GCCAGCAGCCTCTTCACTGTCCGATGGAGACGCCTCTaGGTGAGAATCTGCAGGGTGTTCAGGGCTCTCCTT +
Preference number: 6 (lower is better)
Translates to: ASSLFTVRWRRL*VRICRVFRALL
Trigger: AAGGAGAGCCCTGAACACCCTGCAGATTCTCACTCAGAGGCGTCTCCATCGGACAGTGAAGAGGCTGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CAA 90 bp GATGGCTGGTCTTCATTTTCCATTTCGGGATCTCGGTCTCTCGCTTaGTCAGAAAGGAGCACCTCCACCTGCTCGTGCTCGCGGATGGCG +
Preference number: 6 (lower is better)
Translates to: DGWSSFSISGSRSLA*SERSTSTCSCSRMA
Trigger: CGCCATCCGCGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACCGAGATCCCGAAATGGAAAATGAAGACCAGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
CDS TCA 72 bp TGTACCACTGCATGTGCTCGCCTTTCTCCTTCAGCATaGTGGCCAGCGAGTGTCCGCCCAAAAGACCCCCAA +
Preference number: 6 (lower is better)
Translates to: CTTACARLSPSA*WPASVRPKDPQ
Trigger: TTGGGGGTCTTTTGGGCGGACACTCGCTGGCCATCATGCTGAAGGAGAAAGGCGAGCACATGCAGTGGTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp GCCATGTGGAGGAGCTCGTCATTGTACCACTGCATGTaGTCGCCTTTCTCCTTCAGCATGATGGCCAGCGAG +
Preference number: 6 (lower is better)
Translates to: AMWRSSSLYHCM*SPFSFSMMASE
Trigger: CTCGCTGGCCATCATGCTGAAGGAGAAAGGCGAGCACATGCAGTGGTACAATGACGAGCTCCTCCACATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CAA 72 bp CTGCCTTCCTTGCTGAACAGGAACAGCATGGGGATCTaGATGTCGTCTGTGTCCTTCCCATCGCCGGCCATC +
Preference number: 6 (lower is better)
Translates to: LPSLLNRNSMGI*MSSVSFPSPAI
Trigger: GATGGCCGGCGATGGGAAGGACACAGACGACATCAAGATCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CAA 72 bp TGCTCGCGGATGGCGTCCAGGATGATGCTGCCTTCCTaGCTGAACAGGAACAGCATGGGGATCTTGATGTCG +
Preference number: 6 (lower is better)
Translates to: CSRMASRMMLPS*LNRNSMGILMS
Trigger: CGACATCAAGATCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAGCATCATCCTGGACGCCATCCGCGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS TCA 72 bp GCAGCCTCTTCACTGTCCGATGGAGACGCCTCTGAGTaGGAATCTGCAGGGTGTTCAGGGCTCTCCTTATCA +
Preference number: 6 (lower is better)
Translates to: AASSLSDGDASE*ESAGCSGLSLS
Trigger: TGATAAGGAGAGCCCTGAACACCCTGCAGATTCTCACTCAGAGGCGTCTCCATCGGACAGTGAAGAGGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp TCGACTCAGTGCAGCAAACTCGAGGATCAAGGTGCCTaGACAGGCTGTACAGGTGTCTGTCTCTGTTCCCGT +
Preference number: 6 (lower is better)
Translates to: STQCSKLEDQGA*TGCTGVCLCSR
Trigger: ACGGGAACAGAGACAGACACCTGTACAGCCTGTGCAGGCACCTTGATCCTCGAGTTTGCTGCACTGAGTCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp TGTCGCTACTGCTCCCCTCGTTGTCATCGATCACAATaGCACCGATGGCGCCAGCATTCTGAATGTTGCGTG +
Preference number: 6 (lower is better)
Translates to: CRYCSPRCHRSQ*HRWRQHSECCV
Trigger: CACGCAACATTCAGAATGCTGGCGCCATCGGTGGCATTGTGATCGATGACAACGAGGGGAGCAGTAGCGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp TGCTTTGCCATGTGGAGGAGCTCGTCATTGTACCACTaGATGTGCTCGCCTTTCTCCTTCAGCATGATGGCC +
Preference number: 6 (lower is better)
Translates to: CFAMWRSSSLYH*MCSPFSFSMMA
Trigger: GGCCATCATGCTGAAGGAGAAAGGCGAGCACATGCAGTGGTACAATGACGAGCTCCTCCACATGGCAAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 72 bp GCATCCATCCAGGTCCGAGCGTTCAGCATTGGTTTGTaGATATGCACATCAAGTAGGAGAGGTGGCTGGCTT +
Preference number: 6 (lower is better)
Translates to: ASIQVRAFSIGL*ICTSSRRGGWL
Trigger: AAGCCAGCCACCTCTCCTACTTGATGTGCATATCCACAAACCAATGCTGAACGCTCGGACCTGGATGGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CAA 72 bp TCTTCATTTTCCATTTCGGGATCTCGGTCTCTCGCTTaGTCAGAAAGGAGCACCTCCACCTGCTCGTGCTCG +
Preference number: 6 (lower is better)
Translates to: SSFSISGSRSLA*SERSTSTCSCS
Trigger: CGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACCGAGATCCCGAAATGGAAAATGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
CDS CAA 90 bp CTTGGAATCATTTTACCTTTTAATATGGCTGCTCGGTCTCTCGCTTaGTCAGAAAGGAGCACCTCCACCTGCTCGTGCTCGCGGATGGCG +
Preference number: 6 (lower is better)
Translates to: LGIILPFNMAARSLA*SERSTSTCSCSRMA
Trigger: CGCCATCCGCGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACCGAGCAGCCATATTAAAAGGTAAAATGATTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188145.7
CDS CCA 72 bp TTCTGTCCTCATGACTCCCAGTGCGAACATCCTTCATaGCAGCAAACCCGCAAGGCACTCGAGCATACTTAT +
Preference number: 6 (lower is better)
Translates to: FCPHDSQCEHPS*QQTRKALEHTY
Trigger: ATAAGTATGCTCGAGTGCCTTGCGGGTTTGCTGCCATGAAGGATGTTCGCACTGGGAGTCATGAGGACAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CAA 72 bp AATGCATCCATCCAGGTCCGAGCGTTCAGCATTGGTTaGTGGATATGCACATCAAGTAGGAGAGGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: NASIQVRAFSIG*WICTSSRRGGW
Trigger: CCAGCCACCTCTCCTACTTGATGTGCATATCCACAAACCAATGCTGAACGCTCGGACCTGGATGGATGCATT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CAA 72 bp ATTTTACCTTTTAATATGGCTGCTCGGTCTCTCGCTTaGTCAGAAAGGAGCACCTCCACCTGCTCGTGCTCG +
Preference number: 6 (lower is better)
Translates to: ILPFNMAARSLA*SERSTSTCSCS
Trigger: CGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACCGAGCAGCCATATTAAAAGGTAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188145.7
CDS CAA 90 bp AAGGCAAGCAATGCATCCATCCAGGTCCGAGCGTTCAGCATTGGTTaGTGGATATGCACATCAAGTAGGAGAGGTGGCTGGCTTATATAC +
Preference number: 6 (lower is better)
Translates to: KASNASIQVRAFSIG*WICTSSRRGGWLIY
Trigger: GTATATAAGCCAGCCACCTCTCCTACTTGATGTGCATATCCACAAACCAATGCTGAACGCTCGGACCTGGATGGATGCATTGCTTGCCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS TCA 72 bp CGTGTCTCTTTGTGTTTAGATAGATCCAGCCCAAACTaGGCTGGTCCAGCAGTTAAGACGACCCTGCCAAAA +
Preference number: 6 (lower is better)
Translates to: RVSLCLDRSSPN*AGPAVKTTLPK
Trigger: TTTTGGCAGGGTCGTCTTAACTGCTGGACCAGCTCAGTTTGGGCTGGATCTATCTAAACACAAAGAGACACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp ATCCAGGTCCGAGCGTTCAGCATTGGTTTGTGGATATaGACATCAAGTAGGAGAGGTGGCTGGCTTATATAC +
Preference number: 6 (lower is better)
Translates to: IQVRAFSIGLWI*TSSRRGGWLIY
Trigger: GTATATAAGCCAGCCACCTCTCCTACTTGATGTGCATATCCACAAACCAATGCTGAACGCTCGGACCTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 72 bp AAGTCTGTACATTCACCATCAAGGCTTGTAGTCTCGTaGTTTTCGGTGGACCCAGATATCTGTTCAGAGGGG +
Preference number: 6 (lower is better)
Translates to: KSVHSPSRLVVS*FSVDPDICSEG
Trigger: CCCCTCTGAACAGATATCTGGGTCCACCGAAAACCACGAGACTACAAGCCTTGATGGTGAATGTACAGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS TCA 72 bp CCAGCGAGTGTCCGCCCAAAAGACCCCCAAGAACTCTaGTGTTTGTTTCGAAGACTGAAACAACTACATCAT +
Preference number: 6 (lower is better)
Translates to: PASVRPKDPQEL*CLFRRLKQLHH
Trigger: ATGATGTAGTTGTTTCAGTCTTCGAAACAAACATCAGAGTTCTTGGGGGTCTTTTGGGCGGACACTCGCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 72 bp CTGAGGTTGTGTTCTTCTTTGAGATGCTTCGGTTTGTaGTGGAAAGCCAAAGCGGTAACAGATGAGCTTCTG +
Preference number: 6 (lower is better)
Translates to: LRLCSSLRCFGL*WKAKAVTDELL
Trigger: CAGAAGCTCATCTGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCATCTCAAAGAAGAACACAACCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS CCA 72 bp GCTGGTCTTCATTTTCCATTTCGGGATCTTTTAATATaGCTGCTCGGTCTCTCGCTTTGTCAGAAAGGAGCA +
Preference number: 6 (lower is better)
Translates to: AGLHFPFRDLLI*LLGLSLCQKGA
Trigger: TGCTCCTTTCTGACAAAGCGAGAGACCGAGCAGCCATATTAAAAGATCCCGAAATGGAAAATGAAGACCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191070.2
CDS GCA 72 bp GTTCTGTGTATTCTGAGGTTGTGTTCTTCTTTGAGATaGTTCGGTTTGTGGTGGAAAGCCAAAGCGGTAACA +
Preference number: 6 (lower is better)
Translates to: VLCILRLCSSLR*FGLWWKAKAVT
Trigger: TGTTACCGCTTTGGCTTTCCACCACAAACCGAAGCATCTCAAAGAAGAACACAACCTCAGAATACACAGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS GCA 72 bp CAGCATTCTGAATGTTGCGTGCCTTTTCTGCAAACATaGACTGTCCTCTTTGTATCAAGGCAATTTTTCCCA +
Preference number: 6 (lower is better)
Translates to: QHSECCVPFLQT*TVLFVSRQFFP
Trigger: TGGGAAAAATTGCCTTGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGGCACGCAACATTCAGAATGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2
CDS TCA 72 bp AATTTTTCCCATCACTGCCTCAGGGTTAGTGAGCTCTaGACAACCATTATATGGTTTACTGCTTGCAACAAA +
Preference number: 6 (lower is better)
Translates to: NFSHHCLRVSEL*TTIIWFTACNK
Trigger: TTTGTTGCAAGCAGTAAACCATATAATGGTTGTTCAGAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000059498.12
ENSMUST00000187951.7
ENSMUST00000188145.7
ENSMUST00000191070.2