Pregenerated sensors for EDEM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038312Ensembl transcript IDs: ENSMUST00000040833.5
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCAGCCTGGAAGGCCACATaGATAAAGGGGACAACTAAA | + |
|
Preference number: 2 (lower is better) Translates to: ERNPFPLCAADSLQLWLSAWKAT*IKGTTK Trigger: TTTAGTTGTCCCCTTTATCCATGTGGCCTTCCAGGC...TGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| 3UTR-3UTR TCA 90 bp | GGCTGTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGAAGAAATAAACGGTGGTaGCATCTCCTTCCTCAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: GCHPRVLNKPVLPGRPHGRNKRW*HLLPQR Trigger: TCTTTGAGGAAGGAGATGTCACCACCGTTTATTTCT...TCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGACAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| 3UTR TCA 72 bp | CCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTaGCTCTCTGCAGTTATGGCTGTCACCCAAGGGTGC | + |
|
Preference number: 3 (lower is better) Translates to: PTRTKPVSFVCC*LSAVMAVTQGC Trigger: GCACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| 3UTR TCA 72 bp | GCATGTTGGAAAAACCGACAAAGAAATAAACGGTGGTaGCATCTCCTTCCTCAAAGATACCAGGAAAGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: ACWKNRQRNKRW*HLLPQRYQERK Trigger: CTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCACCGTTTATTTCTTTGTCGGTTTTTCCAACATGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | GAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAGCTGGCTGGGGCAGCTaGGAAGCGGGGTTCGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: ETRFLCVLLTLCSYGCHPAGWGS*EAGFAA Trigger: AGCAGCGAACCCCGCTTCTCAGCTGCCCCAGCCAGC...TGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATAAAGGTGCCGTCGGGGCCTaGCGCACCATGGTGCAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VTQGCLINLYCLEGHMDKGAVGA*RTMVQG Trigger: CCCCTGCACCATGGTGCGCCAGGCCCCGACGGCACC...TTTATCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCACAGGTGAGGAGAGCGTaGCTGGCCCTGACTGGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: ETRFLCVLLTLCSYGCHPQVRRA*LALTGA Trigger: AGCCCCAGTCAGGGCCAGCCACGCTCTCCTCACCTG...TGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | GAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAACCAGCCCCGATGCCTaGATCCTGGGCCACCCACTT | + |
|
Preference number: 4 (lower is better) Translates to: ETRFLCVLLTLCSYGCHPTSPDA*ILGHPL Trigger: AAGTGGGTGGCCCAGGATGCAGGCATCGGGGCTGGT...TGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | ACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGCTCTGAACTGTCTTCCACACCAGCCCCGATaGCTGCATCCTGGGCCACCC | + |
|
Preference number: 4 (lower is better) Translates to: TRKGREIQFLALGALNCLPHQPR*LHPGPP Trigger: GGGTGGCCCAGGATGCAGGCATCGGGGCTGGTGTGG...AAGACAGTTCAGAGCCCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | AACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGCTTCCTCCGCCATCCTaGGGAGAGGCCCAGAACAAG | + |
|
Preference number: 4 (lower is better) Translates to: NPFPLCAADSLQLWLSPKLPPPS*GEAQNK Trigger: CTTGTTCTGGGCCTCTCCTCAGGATGGCGGAGGAAG...CTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | GGCTGTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGACTGCCCCAGGTGTCGTaGCCATCACAGGTGAGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GCHPRVLNKPVLPGRPHGLPQVS*PSQVRG Trigger: ACCTCTCACCTGTGATGGGCACGACACCTGGGGCAG...TCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGACAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | CTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGCTTAATCGCTGCTGGGCAGGCTaGTTCTCCCTGGGCTGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LCVLLTLCSYGCHPRVLNRCWAG*FSLGWF Trigger: AAACCAGCCCAGGGAGAAGCAGCCTGCCCAGCAGCG...ATTAAGCACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | CTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGCTTAATAACCAGCCCGATATCTaGCCGGCTCTCCCAGAGACG | + |
|
Preference number: 4 (lower is better) Translates to: LCVLLTLCSYGCHPRVLNNQPDI*PALPET Trigger: CGTCTCTGGGAGAGCCGGTCAGATATCGGGCTGGTT...ATTAAGCACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | CGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGCCACCCACTTGCCAGTaGGCACATCGATGTGATTGC | + |
|
Preference number: 4 (lower is better) Translates to: RFLCVLLTLCSYGCHPRVPPTCQ*AHRCDC Trigger: GCAATCACATCGATGTGCTCACTGGCAAGTGGGTGG...CACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | TTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGCTTGCGGTAGAGGTACATTaGGCTCTCGATGAGCTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: FLCVLLTLCSYGCHPRVLAVEVH*ALDELR Trigger: CCGGAGCTCATCGAGAGCGCAATGTACCTCTACCGC...AAGCACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | GTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTGGGCTGGTTTGCAGGTaGGGAGAGCGTGGCTGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VVTSPSSKIPGKEERSNFGLVCR*GERGWP Trigger: GGGCCAGCCACGCTCTCCTCACCTGCAAACCAGCCC...AAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | AACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGCGGTTGTCAAGCTTGTaGTCCCGGAGGTCCTTGATC | + |
|
Preference number: 4 (lower is better) Translates to: NPFPLCAADSLQLWLSPKRLSSL*SRRSLI Trigger: GATCAAGGACCTCCGGGACCACAAGCTTGACAACCG...CTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | CGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGAGGATGCACTCCCCATaGGGAGTCATCACAGAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: RFLCVLLTLCSYGCHPRVRMHSP*GVITES Trigger: TGACTCTGTGATGACTCCCCATGGGGAGTGCATCCT...CACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | ACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGCTCTGAACTGTCTTGGTAGAACATGGCCTTaGCTCGCTCCCTGTAGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: TRKGREIQFLALGALNCLGRTWP*LAPCSG Trigger: CCCACTACAGGGAGCGAGTCAAGGCCATGTTCTACC...AAGACAGTTCAGAGCCCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | CCGGAATCTAGTTCCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTGCAGGGTCAATGGGGTaGGCCTCCGTGTTGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: PESSSNKNETRFLCVLLTAGSMG*ASVLKM Trigger: CATCTTCAACACGGAGGCTCACCCCATTGACCCTGC...AGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGGAACTAGATTCCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | TTCCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTACGTGGGGGTCTGAAATaGTGGGAGGAGTTTCCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: FQQERNPFPLCAADSLQLRGGLK*WEEFPG Trigger: GCCCGGAAACTCCTCCCAGCATTTCAGACCCCCACG...TAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | TTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGCTTGAAGGTCCCAATCCCTaGTGTACAGGTAACAGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: FLCVLLTLCSYGCHPRVLEGPNP*CTGNRG Trigger: ACCCCTGTTACCTGTACAGCAGGGATTGGGACCTTC...AAGCACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | TCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGAGCCTCCGGCAGCAGTaGAAGGCAGCAGGGTCAATG | + |
|
Preference number: 4 (lower is better) Translates to: SFLKDTRKGREIQFLALGSLRQQ*KAAGSM Trigger: CATTGACCCTGCTGCCTTGCACTGCTGCCGGAGGCT...CCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | CCGGAATCTAGTTCCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCATAGGGCATGCCCGTaGGGGTCTGAAATGCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: PESSSNKNETRFLCVLLTHRACP*GSEMLG Trigger: TCCCAGCATTTCAGACCCCCACGGGCATGCCCTATG...AGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGGAACTAGATTCCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATAAAGAGCTCCGGTCGGAGTaGGTAGCCTTCTCGCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: VTQGCLINLYCLEGHMDKELRSE*VAFSLL Trigger: GAGAAGCGAGAAGGCTACCCACTCCGACCGGAGCTC...TTTATCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | ACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGCTCTGAACTGTCTTGAGTGGGATCCCCAGTaGCGCGGTAGAGGTACATTG | + |
|
Preference number: 4 (lower is better) Translates to: TRKGREIQFLALGALNCLEWDPQ*RGRGTL Trigger: CAATGTACCTCTACCGCGCCACTGGGGATCCCACTC...AAGACAGTTCAGAGCCCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATAAACAGGCTGCTTCTCCCTaGGCTGGTTTGCAGGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VTQGCLINLYCLEGHMDKQAASP*AGLQVR Trigger: CCTCACCTGCAAACCAGCCCAGGGAGAAGCAGCCTG...TTTATCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | GAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACACACCGGCCTTCTTTaGCAAGAGATGAGCAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: ERNPFPLCAADSLQLWLSHTGLL*QEMSRK Trigger: CTTTCTGCTCATCTCTTGTCAAAGAAGGCCGGTGTG...TGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | TTCCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTACCAGGGTTCACGCCATaGAGCAGGTTCACAGTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: FQQERNPFPLCAADSLQLPGFTP*SRFTVP Trigger: TGGAACTGTGAACCTGCTTCATGGCGTGAACCCTGG...TAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | ACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGCTCTGAACTGTCTTCTGGAAGACAGGCATTaGCACGGTCCCCTTGTACAT | + |
|
Preference number: 4 (lower is better) Translates to: TRKGREIQFLALGALNCLLEDRH*HGPLVH Trigger: ATGTACAAGGGGACCGTGTCAATGCCTGTCTTCCAG...AAGACAGTTCAGAGCCCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | TCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGCTCACTGTCTTCCTCTaGGCTCTCTTTGGCCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: SFLKDTRKGREIQFLALGLTVFL*ALFGLL Trigger: GAGCAGGCCAAAGAGAGCTCAGAGGAAGACAGTGAG...CCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | GTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATAAACAGTTCCATAGGGCATaGCCGTGGGGGTCTGAAATG | + |
|
Preference number: 4 (lower is better) Translates to: VTQGCLINLYCLEGHMDKQFHRA*PWGSEM Trigger: CATTTCAGACCCCCACGGGCATGCCCTATGGAACTG...TTTATCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR GCA 90 bp | AGTTCCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTGTCCCCTTGTACATCTaGACCCAGAGGTACCAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: SSNKNETRFLCVLLTLCSVPLYI*TQRYQS Trigger: TGACTGGTACCTCTGGGTGCAGATGTACAAGGGGAC...ACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | GGCTGTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATTCTTTGACAAGAGATaGGCAGAAAGGAGTCCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: GCHPRVLNKPVLPGRPHGFFDKR*AERSPP Trigger: AGGAGGACTCCTTTCTGCTCATCTCTTGTCAAAGAA...TCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGACAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | TCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGTGAGCACATCGATGTaGTTGCCAACCAGCCCGATA | + |
|
Preference number: 4 (lower is better) Translates to: SFLKDTRKGREIQFLALGVSTSM*LPTSPI Trigger: TATCGGGCTGGTTGGCAATCACATCGATGTGCTCAC...CCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTTGCTTCTCCCTGGGCTaGTTTGCAGGTGAGGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: VVTSPSSKIPGKEERSNFCFSLG*FAGEES Trigger: GCTCTCCTCACCTGCAAACCAGCCCAGGGAGAAGCA...AAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GGTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTGCATCAGGGCCACTCTaGCCACATCTTCAAACACAG | + |
|
Preference number: 4 (lower is better) Translates to: GGDISFLKDTRKGREIQFASGPL*PHLQTQ Trigger: CTGTGTTTGAAGATGTGGCCAGAGTGGCCCTGATGC...AAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GGCTGTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATATCCTGAAGAAGGATaGCTCCTTTTACCAGGTACT | + |
|
Preference number: 4 (lower is better) Translates to: GCHPRVLNKPVLPGRPHGYPEEG*LLLPGT Trigger: AGTACCTGGTAAAAGGAGCCATCCTTCTTCAGGATA...TCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGACAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GGTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTCCTCTGAGCTCTCTTTaGCCTGCTCTGTTTGAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GGDISFLKDTRKGREIQFPLSSL*PALFEG Trigger: TCCCTCAAACAGAGCAGGCCAAAGAGAGCTCAGAGG...AAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | ACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGCTCTGAACTGTCTTGAGTCTAGGAAAACCTaGCCTAGCAATGCCAGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: TRKGREIQFLALGALNCLESRKT*PSNASL Trigger: TAAGCTGGCATTGCTAGGCCAGGTTTTCCTAGACTC...AAGACAGTTCAGAGCCCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | GAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCAATACAGTGTAGTAGTTaGGAAAGGTCCTCATGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: ERNPFPLCAADSLQLWLSIQCSS*ERSSWH Trigger: ATGCCATGAGGACCTTTCTCAACTACTACACTGTAT...TGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | AGTTCCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTCACACTCCACCTTGCTaGTTTTCTCAATGGATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SSNKNETRFLCVLLTLCSHTPPC*FSQWIP Trigger: TGGAATCCATTGAGAAAATCAGCAAGGTGGAGTGTG...ACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGGAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR TCA 90 bp | ACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGCTCTGAACTGTCTTAGCCATTGTTGTGGATaGAGTTGTTTGGGTGGAACA | + |
|
Preference number: 4 (lower is better) Translates to: TRKGREIQFLALGALNCLSHCCG*SCLGGT Trigger: TGTTCCACCCAAACAACTTCATCCACAACAATGGCT...AAGACAGTTCAGAGCCCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | ACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGGCTCTGAACTGTCTTACCTCCACTACTCTTTaGAATTCAGAGGTATTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: TRKGREIQFLALGALNCLTSTTL*NSEVFP Trigger: GGGGAATACCTCTGAATTCCAAAGAGTAGTGGAGGT...AAGACAGTTCAGAGCCCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTCTACCACTCGGATGTTaGTTTCGAACACAGAGGCGT | + |
|
Preference number: 4 (lower is better) Translates to: VVTSPSSKIPGKEERSNFLPLGC*FRTQRR Trigger: ACGCCTCTGTGTTCGAAACCAACATCCGAGTGGTAG...AAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CCA 90 bp | GTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATAAAGTGGATGAAGTTGTTTaGGTGGAACAGAAGATAGAG | + |
|
Preference number: 4 (lower is better) Translates to: VTQGCLINLYCLEGHMDKVDEVV*VEQKIE Trigger: CTCTATCTTCTGTTCCACCCAAACAACTTCATCCAC...TTTATCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS GCA 90 bp | GGCTGGCTGGGGCAGCTGAGAAGCGGGGTTCGCTGCTGGGCAGGCTaGTTCTCCCTGGGCTGGTTTGCAGGTGAGGAGAGCGTGGCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: GWLGQLRSGVRCWAG*FSLGWFAGEESVAG Trigger: GCCAGCCACGCTCTCCTCACCTGCAAACCAGCCCAGGGAGAAGCAGCCTGCCCAGCAGCGAACCCCGCTTCTCAGCTGCCCCAGCCAGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 90 bp | CTGAGAAGCGGGGTTCGCTGCTGGGCAGGCTGCTTCTCCCTGGGCTaGTTTGCAGGTGAGGAGAGCGTGGCTGGCCCTGACTGGGGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LRSGVRCWAGCFSLG*FAGEESVAGPDWGS Trigger: GGAGCCCCAGTCAGGGCCAGCCACGCTCTCCTCACCTGCAAACCAGCCCAGGGAGAAGCAGCCTGCCCAGCAGCGAACCCCGCTTCTCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 90 bp | TCTGAAATGCTGGGAGGAGTTTCCGGGCTGCTTCCTCCGCCATCCTaGGGAGAGGCCCAGAACAAGGCCACCCGGCTTCCACCTCCACAC | + |
|
Preference number: 5 (lower is better) Translates to: SEMLGGVSGLLPPPS*GEAQNKATRLPPPH Trigger: GTGTGGAGGTGGAAGCCGGGTGGCCTTGTTCTGGGCCTCTCCTCAGGATGGCGGAGGAAGCAGCCCGGAAACTCCTCCCAGCATTTCAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 90 bp | CAGGTTCACAGTTCCATAGGGCATGCCCGTGGGGGTCTGAAATGCTaGGAGGAGTTTCCGGGCTGCTTCCTCCGCCATCCTGAGGAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: QVHSSIGHARGGLKC*EEFPGCFLRHPEER Trigger: CCTCTCCTCAGGATGGCGGAGGAAGCAGCCCGGAAACTCCTCCCAGCATTTCAGACCCCCACGGGCATGCCCTATGGAACTGTGAACCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 90 bp | GGTTCACGCCATGAAGCAGGTTCACAGTTCCATAGGGCATGCCCGTaGGGGTCTGAAATGCTGGGAGGAGTTTCCGGGCTGCTTCCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: GSRHEAGSQFHRACP*GSEMLGGVSGLLPP Trigger: CGGAGGAAGCAGCCCGGAAACTCCTCCCAGCATTTCAGACCCCCACGGGCATGCCCTATGGAACTGTGAACCTGCTTCATGGCGTGAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS GCA 90 bp | CTCCAGGGTTCACGCCATGAAGCAGGTTCACAGTTCCATAGGGCATaGCCGTGGGGGTCTGAAATGCTGGGAGGAGTTTCCGGGCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LQGSRHEAGSQFHRA*PWGSEMLGGVSGLL Trigger: AAGCAGCCCGGAAACTCCTCCCAGCATTTCAGACCCCCACGGGCATGCCCTATGGAACTGTGAACCTGCTTCATGGCGTGAACCCTGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 90 bp | CTGAAGGCCAGGCCAGTAGGCCTCCAAGGACTGGAAGACAGGCATTaGCACGGTCCCCTTGTACATCTGCACCCAGAGGTACCAGTCATC | + |
|
Preference number: 5 (lower is better) Translates to: LKARPVGLQGLEDRH*HGPLVHLHPEVPVI Trigger: GATGACTGGTACCTCTGGGTGCAGATGTACAAGGGGACCGTGTCAATGCCTGTCTTCCAGTCCTTGGAGGCCTACTGGCCTGGCCTTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 90 bp | GGGCTCCCAGGGCCCCGACCTCACTGTCTTCCTCTGAGCTCTCTTTaGCCTGCTCTGTTTGAGGGAGTAGAACTCCTTTATCAAGTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: GLPGPRPHCLPLSSL*PALFEGVELLYQVL Trigger: GAGGACTTGATAAAGGAGTTCTACTCCCTCAAACAGAGCAGGCCAAAGAGAGCTCAGAGGAAGACAGTGAGGTCGGGGCCCTGGGAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | AACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGATGCGGTTGTCAAGCTaGTGGTCCCGGAGGTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: NPFPLCAADSLQLWLSPKMRLSS*WSRRSL Trigger: CAAGGACCTCCGGGACCACAAGCTTGACAACCGCAT...CTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 90 bp | ACAGTTTCAGCCAGGAAGAAAGACTCCATGCGGTTGTCAAGCTTGTaGTCCCGGAGGTCCTTGATCGTGGCAAATCCACACTCCACCTTG | + |
|
Preference number: 5 (lower is better) Translates to: TVSARKKDSMRLSSL*SRRSLIVANPHSTL Trigger: CAAGGTGGAGTGTGGATTTGCCACGATCAAGGACCTCCGGGACCACAAGCTTGACAACCGCATGGAGTCTTTCTTCCTGGCTGAAACTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | TCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTTAGCCCTGGGGTCCTGGGCCACCCACTaGCCAGTGAGCACATCGATG | + |
|
Preference number: 5 (lower is better) Translates to: SFLKDTRKGREIQFLALGSWATH*PVSTSM Trigger: CATCGATGTGCTCACTGGCAAGTGGGTGGCCCAGGA...CCCCAGGGCTAAAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | GTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTTCCCACTGCTCCTCCTaGAGCCTCCGGCAGCAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: VVTSPSSKIPGKEERSNFSHCSS*SLRQQC Trigger: GCACTGCTGCCGGAGGCTCAAGGAGGAGCAGTGGGA...AAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | CTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGCTTAATACTGGAAGACAGGCATaGACACGGTCCCCTTGTACA | + |
|
Preference number: 5 (lower is better) Translates to: LCVLLTLCSYGCHPRVLNTGRQA*TRSPCT Trigger: TGTACAAGGGGACCGTGTCAATGCCTGTCTTCCAGT...ATTAAGCACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | GTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATAAACCTACCACTCGGATGTaGGTTTCGAACACAGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: VTQGCLINLYCLEGHMDKPTTRM*VSNTEA Trigger: CGCCTCTGTGTTCGAAACCAACATCCGAGTGGTAGG...TTTATCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | CGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCACCCAAGGGTGAAGGTCCTCATGGCATaGTCAATGTCTCCAATAAGG | + |
|
Preference number: 5 (lower is better) Translates to: RFLCVLLTLCSYGCHPRVKVLMA*SMSPIR Trigger: CCTTATTGGAGACATTGACAATGCCATGAGGACCTT...CACCCTTGGGTGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | GGTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTAAAGACTCCATGCGGTaGTCAAGCTTGTGGTCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: GGDISFLKDTRKGREIQFKDSMR*SSLWSR Trigger: CCGGGACCACAAGCTTGACAACCGCATGGAGTCTTT...AAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | CCGGAATCTAGTTCCAACAAGAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTAAGGTGGAGCCATTGTaGTGGATGAAGTTGTTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: PESSSNKNETRFLCVLLTKVEPL*WMKLFG Trigger: CCCAAACAACTTCATCCACAACAATGGCTCCACCTT...AGTCAGCAGCACACAAAGGAAACGGGTTTCGTTCTTGTTGGAACTAGATTCCGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | GGCTGTCACCCAAGGGTGCTTAATAAACCTGTATTGCCTGGAAGGCCACATGGATCAAAGGTGGAGCCATaGTTGTGGATGAAGTTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: GCHPRVLNKPVLPGRPHGSKVEP*LWMKLF Trigger: AAACAACTTCATCCACAACAATGGCTCCACCTTTGA...TCCATGTGGCCTTCCAGGCAATACAGGTTTATTAAGCACCCTTGGGTGACAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | GGTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTTCCGGATGGCTTTGTaGTACTCTAGGAACATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: GGDISFLKDTRKGREIQFFRMAL*YSRNMA Trigger: GGCCATGTTCCTAGAGTACAACAAAGCCATCCGGAA...AAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | GAACGAAACCCGTTTCCTTTGTGTGCTGCTGACTCTCTGCAGTTATGGCTGTCATTGTTGTGGATGAAGTaGTTTGGGTGGAACAGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: ERNPFPLCAADSLQLWLSLLWMK*FGWNRR Trigger: TCTTCTGTTCCACCCAAACAACTTCATCCACAACAA...TGACAGCCATAACTGCAGAGAGTCAGCAGCACACAAAGGAAACGGGTTTCGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 90 bp | TCGAACACAGAGGCGTTCACGTCGATATCAAAGTCCACATTGTCCTaGAGAACCTCCACTACTCTTTGGAATTCAGAGGTATTCCCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: SNTEAFTSISKSTLS*RTSTTLWNSEVFPK Trigger: TTTGGGGAATACCTCTGAATTCCAAAGAGTAGTGGAGGTTCTTCAGGACAATGTGGACTTTGATATCGACGTGAACGCCTCTGTGTTCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS-3UTR CAA 90 bp | GTGGTGACATCTCCTTCCTCAAAGATACCAGGAAAGGAAGAGAGATCCAATTTTCCACACCGGCCTTCTTaGACAAGAGATGAGCAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: VVTSPSSKIPGKEERSNFPHRPS*TRDEQK Trigger: TTTCTGCTCATCTCTTGTCAAAGAAGGCCGGTGTGG...AAAATTGGATCTCTCTTCCTTTCCTGGTATCTTTGAGGAAGGAGATGTCACCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 90 bp | CATCACAGAGTCAAAGGTGGAGCCATTGTTGTGGATGAAGTTGTTTaGGTGGAACAGAAGATAGAGGTATTTCACAGTTTCAGCCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: HHRVKGGAIVVDEVV*VEQKIEVFHSFSQE Trigger: TTCCTGGCTGAAACTGTGAAATACCTCTATCTTCTGTTCCACCCAAACAACTTCATCCACAACAATGGCTCCACCTTTGACTCTGTGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 90 bp | GAAGCGGGGTTCGCTGCTGGGCAGGCTGCTTCTCCCTGGGCTGGTTaGCAGGTGAGGAGAGCGTGGCTGGCCCTGACTGGGGCTCCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: EAGFAAGQAASPWAG*QVRRAWLALTGAPR Trigger: CCTGGGAGCCCCAGTCAGGGCCAGCCACGCTCTCCTCACCTGCAAACCAGCCCAGGGAGAAGCAGCCTGCCCAGCAGCGAACCCCGCTTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS GCA 72 bp | GGGCAGCTGAGAAGCGGGGTTCGCTGCTGGGCAGGCTaGTTCTCCCTGGGCTGGTTTGCAGGTGAGGAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: GQLRSGVRCWAG*FSLGWFAGEES Trigger: GCTCTCCTCACCTGCAAACCAGCCCAGGGAGAAGCAGCCTGCCCAGCAGCGAACCCCGCTTCTCAGCTGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 72 bp | CCAGGTAACTGTCGTAGGCGTGGTAGAACATGGCCTTaGCTCGCTCCCTGTAGTGGGCGGGGTCGGGCGCGG | + |
|
Preference number: 6 (lower is better) Translates to: PGNCRRRGRTWP*LAPCSGRGRAR Trigger: CCGCGCCCGACCCCGCCCACTACAGGGAGCGAGTCAAGGCCATGTTCTACCACGCCTACGACAGTTACCTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 72 bp | CTGGGAGGAGTTTCCGGGCTGCTTCCTCCGCCATCCTaGGGAGAGGCCCAGAACAAGGCCACCCGGCTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: LGGVSGLLPPPS*GEAQNKATRLP Trigger: TGGAAGCCGGGTGGCCTTGTTCTGGGCCTCTCCTCAGGATGGCGGAGGAAGCAGCCCGGAAACTCCTCCCAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS GCA 72 bp | GAGAGTGGGATCCCCAGTGGCGCGGTAGAGGTACATTaGGCTCTCGATGAGCTCCGGTCGGAGTGGGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: ESGIPSGAVEVH*ALDELRSEWVA Trigger: GGCTACCCACTCCGACCGGAGCTCATCGAGAGCGCAATGTACCTCTACCGCGCCACTGGGGATCCCACTCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS GCA 72 bp | CGTGGGGGTCTGAAATGCTGGGAGGAGTTTCCGGGCTaGTTCCTCCGCCATCCTGAGGAGAGGCCCAGAACA | + |
|
Preference number: 6 (lower is better) Translates to: RGGLKCWEEFPG*FLRHPEERPRT Trigger: TGTTCTGGGCCTCTCCTCAGGATGGCGGAGGAAGCAGCCCGGAAACTCCTCCCAGCATTTCAGACCCCCACG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 72 bp | AGTTCCATAGGGCATGCCCGTGGGGGTCTGAAATGCTaGGAGGAGTTTCCGGGCTGCTTCCTCCGCCATCCT | + |
|
Preference number: 6 (lower is better) Translates to: SSIGHARGGLKC*EEFPGCFLRHP Trigger: AGGATGGCGGAGGAAGCAGCCCGGAAACTCCTCCCAGCATTTCAGACCCCCACGGGCATGCCCTATGGAACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 72 bp | GAGCACATCGATGTGATTGCCAACCAGCCCGATATCTaGCCGGCTCTCCCAGAGACGCATCAGGGCCACTCT | + |
|
Preference number: 6 (lower is better) Translates to: EHIDVIANQPDI*PALPETHQGHS Trigger: AGAGTGGCCCTGATGCGTCTCTGGGAGAGCCGGTCAGATATCGGGCTGGTTGGCAATCACATCGATGTGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 72 bp | CATGAAGCAGGTTCACAGTTCCATAGGGCATGCCCGTaGGGGTCTGAAATGCTGGGAGGAGTTTCCGGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: HEAGSQFHRACP*GSEMLGGVSGL Trigger: CAGCCCGGAAACTCCTCCCAGCATTTCAGACCCCCACGGGCATGCCCTATGGAACTGTGAACCTGCTTCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 72 bp | GAGGTACATTGCGCTCTCGATGAGCTCCGGTCGGAGTaGGTAGCCTTCTCGCTTCTCCACTGTGTATCCCTG | + |
|
Preference number: 6 (lower is better) Translates to: EVHCALDELRSE*VAFSLLHCVSL Trigger: CAGGGATACACAGTGGAGAAGCGAGAAGGCTACCCACTCCGACCGGAGCTCATCGAGAGCGCAATGTACCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 72 bp | CAGGCCAGTAGGCCTCCAAGGACTGGAAGACAGGCATaGACACGGTCCCCTTGTACATCTGCACCCAGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: QASRPPRTGRQA*TRSPCTSAPRG Trigger: ACCTCTGGGTGCAGATGTACAAGGGGACCGTGTCAATGCCTGTCTTCCAGTCCTTGGAGGCCTACTGGCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 90 bp | TCTGAAGGCCAGGCCAGTAGGCCTCCAAGGACTGGAAGACAGGCATaGACACGGTCCCCTTGTACATCTGCACCCAGAGGTACCAGTCAT | + |
|
Preference number: 6 (lower is better) Translates to: SEGQASRPPRTGRQA*TRSPCTSAPRGTSH Trigger: ATGACTGGTACCTCTGGGTGCAGATGTACAAGGGGACCGTGTCAATGCCTGTCTTCCAGTCCTTGGAGGCCTACTGGCCTGGCCTTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 72 bp | AGGCCAGTAGGCCTCCAAGGACTGGAAGACAGGCATTaGCACGGTCCCCTTGTACATCTGCACCCAGAGGTA | + |
|
Preference number: 6 (lower is better) Translates to: RPVGLQGLEDRH*HGPLVHLHPEV Trigger: TACCTCTGGGTGCAGATGTACAAGGGGACCGTGTCAATGCCTGTCTTCCAGTCCTTGGAGGCCTACTGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS GCA 72 bp | TCACGCCATGAAGCAGGTTCACAGTTCCATAGGGCATaGCCGTGGGGGTCTGAAATGCTGGGAGGAGTTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SRHEAGSQFHRA*PWGSEMLGGVS Trigger: GGAAACTCCTCCCAGCATTTCAGACCCCCACGGGCATGCCCTATGGAACTGTGAACCTGCTTCATGGCGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 72 bp | TGGATTCCACAGCGTCTCTCCCAAGTTCTAAGAGAGTaGGATCCCCAGTGGCGCGGTAGAGGTACATTGCGC | + |
|
Preference number: 6 (lower is better) Translates to: WIPQRLSQVLRE*DPQWRGRGTLR Trigger: GCGCAATGTACCTCTACCGCGCCACTGGGGATCCCACTCTCTTAGAACTTGGGAGAGACGCTGTGGAATCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 72 bp | GCCAGGAAGAAAGACTCCATGCGGTTGTCAAGCTTGTaGTCCCGGAGGTCCTTGATCGTGGCAAATCCACAC | + |
|
Preference number: 6 (lower is better) Translates to: ARKKDSMRLSSL*SRRSLIVANPH Trigger: GTGTGGATTTGCCACGATCAAGGACCTCCGGGACCACAAGCTTGACAACCGCATGGAGTCTTTCTTCCTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 72 bp | GCTTCCACCTCCACACCGGCCTTCTTTGACAAGAGATaGGCAGAAAGGAGTCCTCCTACCACTCGGATGTTG | + |
|
Preference number: 6 (lower is better) Translates to: ASTSTPAFFDKR*AERSPPTTRML Trigger: CAACATCCGAGTGGTAGGAGGACTCCTTTCTGCTCATCTCTTGTCAAAGAAGGCCGGTGTGGAGGTGGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 72 bp | GGGCCCCGACCTCACTGTCTTCCTCTGAGCTCTCTTTaGCCTGCTCTGTTTGAGGGAGTAGAACTCCTTTAT | + |
|
Preference number: 6 (lower is better) Translates to: GPRPHCLPLSSL*PALFEGVELLY Trigger: ATAAAGGAGTTCTACTCCCTCAAACAGAGCAGGCCAAAGAGAGCTCAGAGGAAGACAGTGAGGTCGGGGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 72 bp | TCCAAGGACTGGAAGACAGGCATTGACACGGTCCCCTaGTACATCTGCACCCAGAGGTACCAGTCATCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: SKDWKTGIDTVP*YICTQRYQSSK Trigger: CTTCGATGACTGGTACCTCTGGGTGCAGATGTACAAGGGGACCGTGTCAATGCCTGTCTTCCAGTCCTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 72 bp | TCAGCCAGGAAGAAAGACTCCATGCGGTTGTCAAGCTaGTGGTCCCGGAGGTCCTTGATCGTGGCAAATCCA | + |
|
Preference number: 6 (lower is better) Translates to: SARKKDSMRLSS*WSRRSLIVANP Trigger: TGGATTTGCCACGATCAAGGACCTCCGGGACCACAAGCTTGACAACCGCATGGAGTCTTTCTTCCTGGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 90 bp | TTCACAGTTTCAGCCAGGAAGAAAGACTCCATGCGGTTGTCAAGCTaGTGGTCCCGGAGGTCCTTGATCGTGGCAAATCCACACTCCACC | + |
|
Preference number: 6 (lower is better) Translates to: FTVSARKKDSMRLSS*WSRRSLIVANPHST Trigger: GGTGGAGTGTGGATTTGCCACGATCAAGGACCTCCGGGACCACAAGCTTGACAACCGCATGGAGTCTTTCTTCCTGGCTGAAACTGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 72 bp | GAGAAAAACTGCCCCAGGTGTCGTGCCCATCACAGGTaGGAGGTCTCAGCTCATCGTAGGGAAAGGCATTTT | + |
|
Preference number: 6 (lower is better) Translates to: EKNCPRCRAHHR*EVSAHRRERHF Trigger: AAAATGCCTTTCCCTACGATGAGCTGAGACCTCTCACCTGTGATGGGCACGACACCTGGGGCAGTTTTTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 90 bp | TTGTGGTCCCGGAGGTCCTTGATCGTGGCAAATCCACACTCCACCTaGCTGATTTTCTCAATGGATTCCACAGCGTCTCTCCCAAGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: LWSRRSLIVANPHST*LIFSMDSTASLPSS Trigger: AGAACTTGGGAGAGACGCTGTGGAATCCATTGAGAAAATCAGCAAGGTGGAGTGTGGATTTGCCACGATCAAGGACCTCCGGGACCACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 72 bp | CGGAGGTCCTTGATCGTGGCAAATCCACACTCCACCTaGCTGATTTTCTCAATGGATTCCACAGCGTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: RRSLIVANPHST*LIFSMDSTASL Trigger: GAGAGACGCTGTGGAATCCATTGAGAAAATCAGCAAGGTGGAGTGTGGATTTGCCACGATCAAGGACCTCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CAA 90 bp | GTCGATATCAAAGTCCACATTGTCCTGAAGAACCTCCACTACTCTTaGGAATTCAGAGGTATTCCCCAAAATCAGCAAGGTGTCCAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: VDIKVHIVLKNLHYS*EFRGIPQNQQGVQG Trigger: GCCCTGGACACCTTGCTGATTTTGGGGAATACCTCTGAATTCCAAAGAGTAGTGGAGGTTCTTCAGGACAATGTGGACTTTGATATCGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS TCA 72 bp | GAGGCGTTCACGTCGATATCAAAGTCCACATTGTCCTaGAGAACCTCCACTACTCTTTGGAATTCAGAGGTA | + |
|
Preference number: 6 (lower is better) Translates to: EAFTSISKSTLS*RTSTTLWNSEV Trigger: TACCTCTGAATTCCAAAGAGTAGTGGAGGTTCTTCAGGACAATGTGGACTTTGATATCGACGTGAACGCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||
| CDS CCA 72 bp | GTCAAAGGTGGAGCCATTGTTGTGGATGAAGTTGTTTaGGTGGAACAGAAGATAGAGGTATTTCACAGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: VKGGAIVVDEVV*VEQKIEVFHSF Trigger: GAAACTGTGAAATACCTCTATCTTCTGTTCCACCCAAACAACTTCATCCACAACAATGGCTCCACCTTTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040833.5 |
||