Pregenerated sensors for EDDM3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072575Ensembl transcript IDs: ENSMUST00000100645.5
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGAAGGGTGGAGGATTGGGGGTGGGTGGGAGAGTGAGGGGTGGGTaGAGGAGGTTGACACTTGAGAACTATTCACTGCTCTTTCAGAAC | + |
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Preference number: 1 (lower is better) Translates to: VKGGGLGVGGRVRGG*RRLTLENYSLLFQN Trigger: GTTCTGAAAGAGCAGTGAATAGTTCTCAAGTGTCAACCTCCTTCACCCACCCCTCACTCTCCCACCCACCCCCAATCCTCCACCCTTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR GCA 90 bp | ATACCAAGAATCAATGTGATTGATTGCAAAATACTGACAGACAATTaGAAAGCAGAAGTAACAGTAACTATTGTAAGCAGGGGGTGGAGG | + |
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Preference number: 1 (lower is better) Translates to: IPRINVIDCKILTDN*KAEVTVTIVSRGWR Trigger: CCTCCACCCCCTGCTTACAATAGTTACTGTTACTTCTGCTTTGCAATTGTCTGTCAGTATTTTGCAATCAATCACATTGATTCTTGGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR TCA 90 bp | GCTCTGCCTAACTCTTCCCTGAGGACAACAGAGCCAGCAGACTACAGACCAGCCAGAGTGAGGGGTGGGTaGAGGAGGTTGACACTTGAG | + |
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Preference number: 2 (lower is better) Translates to: ALPNSSLRTTEPADYRPARVRGG*RRLTLE Trigger: CTCAAGTGTCAACCTCCTTCACCCACCCCTCACTCT...GGCTGGTCTGTAGTCTGCTGGCTCTGTTGTCCTCAGGGAAGAGTTAGGCAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR TCA 90 bp | GCTCTGCCTAACTCTTCCCTGAGGACAACAGAGCCAGCAGACTACAGACCAGCCAAGGAGGTTGACACTTaGGAACTATTCACTGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: ALPNSSLRTTEPADYRPAKEVDT*ELFTAL Trigger: AAGAGCAGTGAATAGTTCTCAAGTGTCAACCTCCTT...GGCTGGTCTGTAGTCTGCTGGCTCTGTTGTCCTCAGGGAAGAGTTAGGCAGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR CCA 90 bp | GCTGTCCAATGTCCTCCCATGGGCTCCTGTGTTGAAGGTTTATTTGACAGTTGGATTGTAAGCAGGGGGTaGAGGGTGAAGGGTAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: AVQCPPMGSCVEGLFDSWIVSRG*RVKGKW Trigger: CCACTTACCCTTCACCCTCCACCCCCTGCTTACAAT...CCAACTGTCAAATAAACCTTCAACACAGGAGCCCATGGGAGGACATTGGACAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR TCA 90 bp | CTGGAGCTGCCATTGTCTTATCTTGTCCCTATACTCTTCTCCTTCCTTCTCTGTTGCCTAACTCTTCCCTaGGGACAACAGAGCCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LELPLSYLVPILFSFLLCCLTLP*GQQSQQ Trigger: CTGCTGGCTCTGTTGTCCTCAGGGAAGAGTTAGGCA...ACAGAGAAGGAAGGAGAAGAGTATAGGGACAAGATAAGACAATGGCAGCTCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR CAA 90 bp | AGACTACAGACCAGCCCAGAGATTAGGAGGCAAATAAACCCTCCTTaGAATGCTTTCTCTCAAACATTTTGTCACAGTAGCAGAGAGCCG | + |
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Preference number: 2 (lower is better) Translates to: RLQTSPEIRRQINPP*NAFSQTFCHSSREP Trigger: CGGCTCTCTGCTACTGTGACAAAATGTTTGAGAGAAAGCATTCAAAGGAGGGTTTATTTGCCTCCTAATCTCTGGGCTGGTCTGTAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR TCA 90 bp | GCTGTCCAATGTCCTCCCATGGGCTCCTGTGTTGAAGGTTTATTTGACAGTTGGTTGATTGCAAAATACTaGCAGACAATTGCAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: AVQCPPMGSCVEGLFDSWLIAKY*QTIAKQ Trigger: CTGCTTTGCAATTGTCTGTCAGTATTTTGCAATCAA...CCAACTGTCAAATAAACCTTCAACACAGGAGCCCATGGGAGGACATTGGACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR TCA 90 bp | TATCAGCAAAAATCCTGGATAAGTCAAGAGAAGATGCTGGCATGGTTTGGCTGTCAGAGAGCCGAGTCATaGAAAATGGGAATAAAAGTA | + |
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Preference number: 2 (lower is better) Translates to: YQQKSWISQEKMLAWFGCQRAES*KMGIKV Trigger: TACTTTTATTCCCATTTTTCATGACTCGGCTCTCTG...ACAGCCAAACCATGCCAGCATCTTCTCTTGACTTATCCAGGATTTTTGCTGATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR CCA 90 bp | GTGTATACATATGACACACAATGGAATAACAATTTATTCTGGGAAGGGAAGATCGGTTTATTTGACAGTTaGGTCATGAAAGCTGTAATT | + |
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Preference number: 2 (lower is better) Translates to: VYTYDTQWNNNLFWEGKIGLFDS*VMKAVI Trigger: AATTACAGCTTTCATGACCCAACTGTCAAATAAACC...GATCTTCCCTTCCCAGAATAAATTGTTATTCCATTGTGTGTCATATGTATACAC 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR TCA 72 bp | CATTTCCCCACCACAATGCTCTGCCTAACTCTTCCCTaGGGACAACAGAGCCAGCAGACTACAGACCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: HFPTTMLCLTLP*GQQSQQTTDQP Trigger: GGGCTGGTCTGTAGTCTGCTGGCTCTGTTGTCCTCAGGGAAGAGTTAGGCAGAGCATTGTGGTGGGGAAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR CCA 72 bp | GATGCTGGCATGGTTTGGCTGTCCAATGTCCTCCCATaGGCTCCTGTGTTGAAGGTTTATTTGACAGTTGGG | + |
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Preference number: 3 (lower is better) Translates to: DAGMVWLSNVLP*APVLKVYLTVG Trigger: CCCAACTGTCAAATAAACCTTCAACACAGGAGCCCATGGGAGGACATTGGACAGCCAAACCATGCCAGCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR GCA 72 bp | CTGAAGGCCCACCTAGAGGAGGTATGTCACTGGAGCTaGCATTGTCTTATCTTGTCCCTATACTCTTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: LKAHLEEVCHWS*HCLILSLYSSP Trigger: AGGAGAAGAGTATAGGGACAAGATAAGACAATGGCAGCTCCAGTGACATACCTCCTCTAGGTGGGCCTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR CCA 72 bp | GTGGATCTGAAGGCCCACCTAGAGGAGGTATGTCACTaGAGCTGCCATTGTCTTATCTTGTCCCTATACTCT | + |
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Preference number: 3 (lower is better) Translates to: VDLKAHLEEVCH*SCHCLILSLYS Trigger: AGAGTATAGGGACAAGATAAGACAATGGCAGCTCCAGTGACATACCTCCTCTAGGTGGGCCTTCAGATCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR CAA 90 bp | GCTCTGCCTAACTCTTCCCTGAGGACAACAGAGCCAGCAGACTACAGACCAGCCAATACTGACAGACAATaGCAAAGCAGAAGTAACAGT | + |
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Preference number: 3 (lower is better) Translates to: ALPNSSLRTTEPADYRPANTDRQ*QSRSNS Trigger: ACTGTTACTTCTGCTTTGCAATTGTCTGTCAGTATT...GGCTGGTCTGTAGTCTGCTGGCTCTGTTGTCCTCAGGGAAGAGTTAGGCAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR-3UTR CAA 90 bp | GCTGCCATTGTCTTATCTTGTCCCTATACTCTTCTCCTTCCTTCTCTGTCTACTCAAATAAACCCTCCTTaGAATGCTTTCTCTCAAACA | + |
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Preference number: 3 (lower is better) Translates to: AAIVLSCPYTLLLPSLSTQINPP*NAFSQT Trigger: TGTTTGAGAGAAAGCATTCAAAGGAGGGTTTATTTG...AGTAGACAGAGAAGGAAGGAGAAGAGTATAGGGACAAGATAAGACAATGGCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| 3UTR CAA 72 bp | GGCCCACCTAGAGGAGGTATGTCACTGGAGCTGCCATaGTCTTATCTTGTCCCTATACTCTTCTCCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: GPPRGGMSLELP*SYLVPILFSFL Trigger: AAGGAAGGAGAAGAGTATAGGGACAAGATAAGACAATGGCAGCTCCAGTGACATACCTCCTCTAGGTGGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS-3UTR GCA 90 bp | GCTGCCATTGTCTTATCTTGTCCCTATACTCTTCTCCTTCCTTCTCTGTCTACTGCAAGTAGGCTATGCTaGAGGCACAGCAGGAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: AAIVLSCPYTLLLPSLSTASRLC*RHSRSR Trigger: TCTGCTCCTGCTGTGCCTGCAGCATAGCCTACTTGC...AGTAGACAGAGAAGGAAGGAGAAGAGTATAGGGACAAGATAAGACAATGGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS-3UTR CCA 90 bp | CTGGAGCTGCCATTGTCTTATCTTGTCCCTATACTCTTCTCCTTCCTTCTCTGTCTCCTGGAAGTGCTTTaGGCAAGTAGGCTATGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LELPLSYLVPILFSFLLCLLEVL*ASRLCC Trigger: GCAGCATAGCCTACTTGCCCAAAGCACTTCCAGGAG...ACAGAGAAGGAAGGAGAAGAGTATAGGGACAAGATAAGACAATGGCAGCTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS-3UTR TCA 90 bp | CTGGAGCTGCCATTGTCTTATCTTGTCCCTATACTCTTCTCCTTCCTTCTCTGTATAAACAAACATGTGTaGGAGCTTGGGTTTCACGGC | + |
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Preference number: 4 (lower is better) Translates to: LELPLSYLVPILFSFLLCINKHV*ELGFHG Trigger: GCCGTGAAACCCAAGCTCTCACACATGTTTGTTTAT...ACAGAGAAGGAAGGAGAAGAGTATAGGGACAAGATAAGACAATGGCAGCTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS-3UTR TCA 90 bp | GGAATAAAAGTAGGTAAACAAGGGAAGAATGTTATTGCAGGCAGACAACCCATATTGTTTGGACTCAGGTaGTGGTGTTCCATGAACTGC | + |
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Preference number: 4 (lower is better) Translates to: GIKVGKQGKNVIAGRQPILFGLR*WCSMNC Trigger: GCAGTTCATGGAACACCATCACCTGAGTCCAAACAA...TATGGGTTGTCTGCCTGCAATAACATTCTTCCCTTGTTTACCTACTTTTATTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS-3UTR GCA 90 bp | GTGTATACATATGACACACAATGGAATAACAATTTATTCTGGGAAGGGAAGATCACTGCCTCCTGGAAGTaGTTTGGGCAAGTAGGCTAT | + |
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Preference number: 4 (lower is better) Translates to: VYTYDTQWNNNLFWEGKITASWK*FGQVGY Trigger: ATAGCCTACTTGCCCAAAGCACTTCCAGGAGGCAGT...GATCTTCCCTTCCCAGAATAAATTGTTATTCCATTGTGTGTCATATGTATACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS-3UTR GCA 90 bp | CCTCCTTTGAATGCTTTCTCTCAAACATTTTGTCACAGTAGCAGAGAGCCGAGTTCCAGTTGCTACCAATaGATATATGTTCAACTTTGT | + |
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Preference number: 4 (lower is better) Translates to: PPLNAFSQTFCHSSREPSSSCYQ*IYVQLC Trigger: ACAAAGTTGAACATATATGCATTGGTAGCAACTGGA...ACTCGGCTCTCTGCTACTGTGACAAAATGTTTGAGAGAAAGCATTCAAAGGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS-3UTR CCA 90 bp | TATCAGCAAAAATCCTGGATAAGTCAAGAGAAGATGCTGGCATGGTTTGGCTGTACCTTAATGGGAGTCTaGGCCCAAATATACATATTT | + |
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Preference number: 4 (lower is better) Translates to: YQQKSWISQEKMLAWFGCTLMGV*AQIYIF Trigger: AAATATGTATATTTGGGCCCAGACTCCCATTAAGGT...ACAGCCAAACCATGCCAGCATCTTCTCTTGACTTATCCAGGATTTTTGCTGATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS GCA 90 bp | CTAGAGCCTTTATGTCCTCTATGCTGTCGACATACCCATCAGCATTaGAATGGAACTGAACGTAGCTGTAACTCCTTCTCTCTGTATATC | + |
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Preference number: 5 (lower is better) Translates to: LEPLCPLCCRHTHQH*NGTERSCNSFSLYI Trigger: GATATACAGAGAGAAGGAGTTACAGCTACGTTCAGTTCCATTGCAATGCTGATGGGTATGTCGACAGCATAGAGGACATAAAGGCTCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS CCA 90 bp | ATCTGTCATGAGGACATCACAGTTATAGTCACTGAACATTTTGTTTaGACTCAGGTGATGGTGTTCCATGAACTGCCTCCTGGAAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: ICHEDITVIVTEHFV*TQVMVFHELPPGSA Trigger: AGCACTTCCAGGAGGCAGTTCATGGAACACCATCACCTGAGTCCAAACAAAATGTTCAGTGACTATAACTGTGATGTCCTCATGACAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS GCA 72 bp | TTATGTCCTCTATGCTGTCGACATACCCATCAGCATTaGAATGGAACTGAACGTAGCTGTAACTCCTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LCPLCCRHTHQH*NGTERSCNSFS Trigger: AGAGAAGGAGTTACAGCTACGTTCAGTTCCATTGCAATGCTGATGGGTATGTCGACAGCATAGAGGACATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS CCA 72 bp | GAGGACATCACAGTTATAGTCACTGAACATTTTGTTTaGACTCAGGTGATGGTGTTCCATGAACTGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: EDITVIVTEHFV*TQVMVFHELPP Trigger: AGGAGGCAGTTCATGGAACACCATCACCTGAGTCCAAACAAAATGTTCAGTGACTATAACTGTGATGTCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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| CDS GCA 72 bp | CCCAAATATACATATTTTTGTAGCGATCTCTCCAGTTaGTACCAATGCATATATGTTCAACTTTGTACCATG | + |
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Preference number: 6 (lower is better) Translates to: PKYTYFCSDLSS*YQCIYVQLCTM Trigger: CATGGTACAAAGTTGAACATATATGCATTGGTAGCAACTGGAGAGATCGCTACAAAAATATGTATATTTGGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100645.5 |
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