Pregenerated sensors for ECRG4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026051Ensembl transcript IDs: ENSMUST00000027217.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACATGCATGAAATGCAAAAAGCACTTATATTCTTTCCTTTAGCCTaGTGGTCACGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCA | + |
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Preference number: 1 (lower is better) Translates to: HMHEMQKALIFFPLA*WSRGIGREGLLKQA Trigger: TGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACGTGACCATCAGGCTAAAGGAAAGAATATAAGTGCTTTTTGCATTTCATGCATGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR GCA 90 bp | TGGTCACGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGGGCAAGGGCCAGGACTaGAGGCCGCGCAGACGAGGT | + |
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Preference number: 4 (lower is better) Translates to: WSRGIGREGLLKQAQALWGKGQD*RPRRRG Trigger: ACCTCGTCTGCGCGGCCTGCAGTCCTGGCCCTTGCC...CCACAGAGCTTGTGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACGTGACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR GCA 90 bp | TGGTCACGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGAACTGCTGGTACCACTaGTGTACCTCAGGCCGCGTA | + |
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Preference number: 4 (lower is better) Translates to: WSRGIGREGLLKQAQALWNCWYH*CTSGRV Trigger: TACGCGGCCTGAGGTACAGCAGTGGTACCAGCAGTT...CCACAGAGCTTGTGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACGTGACCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR CCA 90 bp | TGGTCACGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGTCCACTTATGCCATCTaGACCCAGGCACAGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: WSRGIGREGLLKQAQALWSTYAI*TQAQQK Trigger: CTTCTGCTGTGCCTGGGTCCAGATGGCATAAGTGGA...CCACAGAGCTTGTGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACGTGACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR CCA 90 bp | TGGTCACGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGGGCTGTGGGGACCAATaGCCGCATCTTCATCATAAT | + |
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Preference number: 4 (lower is better) Translates to: WSRGIGREGLLKQAQALWGCGDQ*PHLHHN Trigger: ATTATGATGAAGATGCGGCCATTGGTCCCCACAGCC...CCACAGAGCTTGTGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACGTGACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR CCA 90 bp | CGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGGCACCTGGTCCTTCTCGTTTCTaGAGCATCTTCTTGAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: RGIGREGLLKQAQALWAPGPSRF*SIFLSL Trigger: CAAACTCAAGAAGATGCTCCAGAAACGAGAAGGACC...AGGTGCCCACAGAGCTTGTGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR TCA 90 bp | TGGTCACGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGTCTGGAGCATCTTCTTaGGTTTGTTTCCACTTATGC | + |
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Preference number: 4 (lower is better) Translates to: WSRGIGREGLLKQAQALWSGASS*VCFHLC Trigger: GCATAAGTGGAAACAAACTCAAGAAGATGCTCCAGA...CCACAGAGCTTGTGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACGTGACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CCA 90 bp | ACCACTGCTGTACCTCAGGCCGCGTACGGTCCCACAGCTGTCGTTTaGCACGCTTCAGGCCACCTAGGAATTCCTTTGCTGTGTTCTCGG | + |
|
Preference number: 5 (lower is better) Translates to: TTAVPQAAYGPTAVV*HASGHLGIPLLCSR Trigger: CCGAGAACACAGCAAAGGAATTCCTAGGTGGCCTGAAGCGTGCCAAACGACAGCTGTGGGACCGTACGCGGCCTGAGGTACAGCAGTGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR CAA 90 bp | CGTGGTATAGGTAGAGAAGGCCTACTGAAGCAGGCACAAGCTCTGTGGGCACCTTTCTGGAGCATCTTCTaGAGTTTGTTTCCACTTATG | + |
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Preference number: 5 (lower is better) Translates to: RGIGREGLLKQAQALWAPFWSIF*SLFPLM Trigger: CATAAGTGGAAACAAACTCAAGAAGATGCTCCAGAA...AGGTGCCCACAGAGCTTGTGCCTGCTTCAGTAGGCCTTCTCTACCTATACCACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS-3UTR CAA 90 bp | ATCGTTAAGCACATGCATGAAATGCAAAAAGCACTTATATTCTTTCCTTTAGCCAGCATCTTCTTGAGTTaGTTTCCACTTATGCCATCT | + |
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Preference number: 5 (lower is better) Translates to: IVKHMHEMQKALIFFPLASIFLS*FPLMPS Trigger: AGATGGCATAAGTGGAAACAAACTCAAGAAGATGCT...GGCTAAAGGAAAGAATATAAGTGCTTTTTGCATTTCATGCATGTGCTTAACGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CCA 72 bp | GTACCTCAGGCCGCGTACGGTCCCACAGCTGTCGTTTaGCACGCTTCAGGCCACCTAGGAATTCCTTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: VPQAAYGPTAVV*HASGHLGIPLL Trigger: CAGCAAAGGAATTCCTAGGTGGCCTGAAGCGTGCCAAACGACAGCTGTGGGACCGTACGCGGCCTGAGGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CAA 90 bp | TACCACTGCTGTACCTCAGGCCGCGTACGGTCCCACAGCTGTCGTTaGGCACGCTTCAGGCCACCTAGGAATTCCTTTGCTGTGTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: YHCCTSGRVRSHSCR*ARFRPPRNSFAVFS Trigger: CGAGAACACAGCAAAGGAATTCCTAGGTGGCCTGAAGCGTGCCAAACGACAGCTGTGGGACCGTACGCGGCCTGAGGTACAGCAGTGGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CAA 72 bp | TGTACCTCAGGCCGCGTACGGTCCCACAGCTGTCGTTaGGCACGCTTCAGGCCACCTAGGAATTCCTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: CTSGRVRSHSCR*ARFRPPRNSFA Trigger: AGCAAAGGAATTCCTAGGTGGCCTGAAGCGTGCCAAACGACAGCTGTGGGACCGTACGCGGCCTGAGGTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CAA 90 bp | TTTGACGGGACAGGTCCTTCTCGTTTCTGGAGCATCTTCTTGAGTTaGTTTCCACTTATGCCATCTGGACCCAGGCACAGCAGAAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: FDGTGPSRFWSIFLS*FPLMPSGPRHSRRS Trigger: GCTCCTTCTGCTGTGCCTGGGTCCAGATGGCATAAGTGGAAACAAACTCAAGAAGATGCTCCAGAAACGAGAAGGACCTGTCCCGTCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS TCA 72 bp | ACGGGACAGGTCCTTCTCGTTTCTGGAGCATCTTCTTaGGTTTGTTTCCACTTATGCCATCTGGACCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: TGQVLLVSGASS*VCFHLCHLDPG Trigger: GCCTGGGTCCAGATGGCATAAGTGGAAACAAACTCAAGAAGATGCTCCAGAAACGAGAAGGACCTGTCCCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CAA 72 bp | GACGGGACAGGTCCTTCTCGTTTCTGGAGCATCTTCTaGAGTTTGTTTCCACTTATGCCATCTGGACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: DGTGPSRFWSIF*SLFPLMPSGPR Trigger: CCTGGGTCCAGATGGCATAAGTGGAAACAAACTCAAGAAGATGCTCCAGAAACGAGAAGGACCTGTCCCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CAA 72 bp | ACAGGTCCTTCTCGTTTCTGGAGCATCTTCTTGAGTTaGTTTCCACTTATGCCATCTGGACCCAGGCACAGC | + |
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Preference number: 6 (lower is better) Translates to: TGPSRFWSIFLS*FPLMPSGPRHS Trigger: GCTGTGCCTGGGTCCAGATGGCATAAGTGGAAACAAACTCAAGAAGATGCTCCAGAAACGAGAAGGACCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS CAA 90 bp | TTAGTCTTTGACGGGACAGGTCCTTCTCGTTTCTGGAGCATCTTCTaGAGTTTGTTTCCACTTATGCCATCTGGACCCAGGCACAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: LVFDGTGPSRFWSIF*SLFPLMPSGPRHSR Trigger: TCTGCTGTGCCTGGGTCCAGATGGCATAAGTGGAAACAAACTCAAGAAGATGCTCCAGAAACGAGAAGGACCTGTCCCGTCAAAGACTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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| CDS TCA 72 bp | CTTTGCTGTGTTCTCGGCTACAGCTACATTAGTCTTTaGCGGGACAGGTCCTTCTCGTTTCTGGAGCATCTT | + |
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Preference number: 6 (lower is better) Translates to: LCCVLGYSYISL*RDRSFSFLEHL Trigger: AAGATGCTCCAGAAACGAGAAGGACCTGTCCCGTCAAAGACTAATGTAGCTGTAGCCGAGAACACAGCAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027217.9 |
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