RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ECPAS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050812

Ensembl transcript IDs: ENSMUST00000055822.15, ENSMUST00000102889.10, ENSMUST00000107557.9, ENSMUST00000134848.2, ENSMUST00000144512.8, ENSMUST00000149301.8

Found 437 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACAATGCGGGCAGGAGAGAAGGTTTAGCAGTTAAAAGCACTGGCTaGTCTTCCAGAGGGCCAAGGTTCAATTCCCAGAACCCACATGCC +
Preference number: 1 (lower is better)
Translates to: NNAGRREGLAVKSTG*SSRGPRFNSQNPHA
Trigger: GGCATGTGGGTTCTGGGAATTGAACCTTGGCCCTCTGGAAGAGCAGCCAGTGCTTTTAACTGCTAAACCTTCTCTCCTGCCCGCATTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR TCA 90 bp TGCCAGCTCACAAGGGCCTATAACTCCAGCTCCAGGAGAACTAACTaGTACCCTCACACAGACATACAGGTAGGCAAAACACCAATGTGC +
Preference number: 1 (lower is better)
Translates to: CQLTRAYNSSSRRTN*YPHTDIQVGKTPMC
Trigger: GCACATTGGTGTTTTGCCTACCTGTATGTCTGTGTGAGGGTATCAGTTAGTTCTCCTGGAGCTGGAGTTATAGGCCCTTGTGAGCTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR TCA 90 bp GCACAGACTCTTAGTAAACACTGGGCCTTGATCAGAAATCTGTCTTaGTCTCTTTCTTCTCTCTCTGGTTCCTCCCATACAGCTCCAGCC +
Preference number: 1 (lower is better)
Translates to: AQTLSKHWALIRNLS*SLSSLSGSSHTAPA
Trigger: GGCTGGAGCTGTATGGGAGGAACCAGAGAGAGAAGAAAGAGATCAAGACAGATTTCTGATCAAGGCCCAGTGTTTACTAAGAGTCTGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 90 bp AGCAGACTAAGTGCTAACAACTTGGTAACAAAGCATCAAGAAACCTaGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGACTC +
Preference number: 1 (lower is better)
Translates to: SRLSANNLVTKHQET*RGSGWAFPLYKHRL
Trigger: GAGTCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATGCTTTGTTACCAAGTTGTTAGCACTTAGTCTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 90 bp AACAACTTGGTAACAAAGCATCAAGAAACCTGGCGTGGCAGTGGATaGGCATTCCCCCTTTATAAGCACAGACTCTTAGTAAACACTGGG +
Preference number: 1 (lower is better)
Translates to: NNLVTKHQETWRGSG*AFPLYKHRLLVNTG
Trigger: CCCAGTGTTTACTAAGAGTCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATGCTTTGTTACCAAGTTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 90 bp TTTGGTAACAGGTTGAGAAAATATCCAAGACAGGATATTAAACTTTaGGTCTGTGGCCTTGGCTCCTGGCCTCAGAAAGCTGCTTTGTCA +
Preference number: 1 (lower is better)
Translates to: FGNRLRKYPRQDIKL*VCGLGSWPQKAALS
Trigger: TGACAAAGCAGCTTTCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAACCTGTTACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR TCA 90 bp TCAGAGGCATCAATGAACATTATAAAGCTCAGTCTCTCACATGTCTaGCCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGT +
Preference number: 1 (lower is better)
Translates to: SEASMNIIKLSLSHV*PKLLWASNEHNTIS
Trigger: ACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGACATGTGAGAGACTGAGCTTTATAATGTTCATTGATGCCTCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 90 bp TCTGATGATGTTTTACAAACAGCAATCATTGTATCAACACGGAAGTaGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTACTGTCAA +
Preference number: 1 (lower is better)
Translates to: SDDVLQTAIIVSTRK*ICLGTLWHFSVYCQ
Trigger: TTGACAGTAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACAATGATTGCTGTTTGTAAAACATCATCAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR GCA 90 bp GATGTTTTACAAACAGCAATCATTGTATCAACACGGAAGTGGATCTaGCTTGGTACCCTCTGGCATTTTTCTGTTTACTGTCAAACATTT +
Preference number: 1 (lower is better)
Translates to: DVLQTAIIVSTRKWI*LGTLWHFSVYCQTF
Trigger: AAATGTTTGACAGTAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACAATGATTGCTGTTTGTAAAACATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR GCA 90 bp CTGTATTTCATTTATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTaGCAGACATATCAAAAACCCAAGTTAATAAGCTCGCTTACCCAC +
Preference number: 1 (lower is better)
Translates to: LYFIYSSFSSFSNDG*QTYQKPKLISSLTH
Trigger: GTGGGTAAGCGAGCTTATTAACTTGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTATAAATGAAATACAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR-3UTR GCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATGTTAAAAGCACTGGCTaGTCTTCCAGAGGGCCAAGG +
Preference number: 2 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHVKSTG*SSRGPR
Trigger: CCTTGGCCCTCTGGAAGAGCAGCCAGTGCTTTTAAC...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR TCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAATTTCAGCCACGGAATaGTGCATGCTACAGAGTAAC +
Preference number: 2 (lower is better)
Translates to: IQDRILNFGSVALAPGLRISATE*CMLQSN
Trigger: GTTACTCTGTAGCATGCATCATTCCGTGGCTGAAAT...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR CAA 90 bp AATGCAAAGGAGGGTGAAATAAAGGAATGGAGAACTAAGGAAGAGTaGCAGATTTCTCACCTTCAGGAAATGGCTTCTCCCCCTCAGCAC +
Preference number: 2 (lower is better)
Translates to: NAKEGEIKEWRTKEE*QISHLQEMASPPQH
Trigger: GTGCTGAGGGGGAGAAGCCATTTCCTGAAGGTGAGAAATCTGCAACTCTTCCTTAGTTCTCCATTCCTTTATTTCACCCTCCTTTGCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR CCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTCAGGATATTAAACTTTaGGTCTGTGGCCTTGGCTCC +
Preference number: 2 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIQDIKL*VCGLGS
Trigger: GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTG...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR-3UTR TCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAGTAAACACTGGGCCTTaGTCAGAAATCTGTCTTGAT +
Preference number: 2 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLVNTGP*SEICLD
Trigger: ATCAAGACAGATTTCTGATCAAGGCCCAGTGTTTAC...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR GCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTATTCCCAGAACCCACATaGCAGCTCACAAGGGCCTAT +
Preference number: 2 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLFPEPT*QLTRAY
Trigger: ATAGGCCCTTGTGAGCTGGCATGTGGGTTCTGGGAA...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR GCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTATTAAGAATCCAACAATaGGGGCAGGAGAGAAGGTTT +
Preference number: 2 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLLRIQQ*GQERRF
Trigger: AAACCTTCTCTCCTGCCCGCATTGTTGGATTCTTAA...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCCCACGGAATGATGCATaGTACAGAGTAACCTTTACT +
Preference number: 2 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSPRNDA*YRVTFT
Trigger: AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGG...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR-3UTR GCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGCTGGCCTCAGAAAGCTaGTTTGTCATCCCCAATCCT +
Preference number: 2 (lower is better)
Translates to: TNTDRLALILLQSIFIFQLASES*FVIPNP
Trigger: AGGATTGGGGATGACAAAGCAGCTTTCTGAGGCCAG...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR-3UTR TCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTATCCAGGAGAACTAACTaGTACCCTCACACAGACATA +
Preference number: 2 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLSRRTN*YPHTDI
Trigger: TATGTCTGTGTGAGGGTATCAGTTAGTTCTCCTGGA...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR CCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTAATCCCAAAAGAACATaGCACTTGTTTGTTTCTTCC +
Preference number: 2 (lower is better)
Translates to: TTYMHEKCRACDFKNPVINPKRT*HLFVSS
Trigger: GGAAGAAACAAACAAGTGCCATGTTCTTTTGGGATT...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR CAA 90 bp CATTTTCATTTAGAAATTCTGATGATGTTTTACAAACAGCAATCATaGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATT +
Preference number: 2 (lower is better)
Translates to: HFHLEILMMFYKQQS*YQHGSGSALVPSGI
Trigger: AATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACAATGATTGCTGTTTGTAAAACATCATCAGAATTTCTAAATGAAAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR TCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGATCAGAAATCTGTCTTaGTCTCTTTCTTCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEIRNLS*SLSSLS
Trigger: AGAGAGAGAAGAAAGAGATCAAGACAGATTTCTGAT...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR GCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATAAATACAGACAGACTTaGTCTAATCTTGCTCCAATC +
Preference number: 2 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHKYRQT*SNLAPI
Trigger: GATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTT...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR GCA 72 bp TTCCAGAGGGCCAAGGTTCAATTCCCAGAACCCACATaGCAGCTCACAAGGGCCTATAACTCCAGCTCCAGG +
Preference number: 3 (lower is better)
Translates to: FQRAKVQFPEPT*QLTRAYNSSSR
Trigger: CCTGGAGCTGGAGTTATAGGCCCTTGTGAGCTGGCATGTGGGTTCTGGGAATTGAACCTTGGCCCTCTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 72 bp CAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTaGCCTCAGAAAGCTGCTTTGTCATCCCCAATCCTG +
Preference number: 3 (lower is better)
Translates to: QDIKLWVCGLGS*PQKAALSSPIL
Trigger: CAGGATTGGGGATGACAAAGCAGCTTTCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR CCA 72 bp CTAAGGAAGAGTTGCAGATTTCTCACCTTCAGGAAATaGCTTCTCCCCCTCAGCACACAATCGCTATGTGGT +
Preference number: 3 (lower is better)
Translates to: LRKSCRFLTFRK*LLPLSTQSLCG
Trigger: ACCACATAGCGATTGTGTGCTGAGGGGGAGAAGCCATTTCCTGAAGGTGAGAAATCTGCAACTCTTCCTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR CAA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAGATCAGAAATCTGTCTaGATCTCTTTCTTCTCTCTC +
Preference number: 3 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRDQKSV*ISFFSL
Trigger: GAGAGAGAAGAAAGAGATCAAGACAGATTTCTGATC...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 72 bp GTAACAAAGCATCAAGAAACCTGGCGTGGCAGTGGATaGGCATTCCCCCTTTATAAGCACAGACTCTTAGTA +
Preference number: 3 (lower is better)
Translates to: VTKHQETWRGSG*AFPLYKHRLLV
Trigger: TACTAAGAGTCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATGCTTTGTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 72 bp AGAGATATTCCTGAGATAGCTGACCGCCTGTGGAATTaGCGACCTAATGCTAACAGCTCTAGCAGACTAAGT +
Preference number: 3 (lower is better)
Translates to: RDIPEIADRLWN*RPNANSSSRLS
Trigger: ACTTAGTCTGCTAGAGCTGTTAGCATTAGGTCGCCAATTCCACAGGCGGTCAGCTATCTCAGGAATATCTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 72 bp AAAAACAAGGATGCGATAAAGAATGGAACGCGCATGTaGGACATGACCACGATGACTACACAGAACAGAAGG +
Preference number: 3 (lower is better)
Translates to: KNKDAIKNGTRM*DMTTMTTQNRR
Trigger: CCTTCTGTTCTGTGTAGTCATCGTGGTCATGTCCCACATGCGCGTTCCATTCTTTATCGCATCCTTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 72 bp AGGTTGAGAAAATATCCAAGACAGGATATTAAACTTTaGGTCTGTGGCCTTGGCTCCTGGCCTCAGAAAGCT +
Preference number: 3 (lower is better)
Translates to: RLRKYPRQDIKL*VCGLGSWPQKA
Trigger: AGCTTTCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR-3UTR CAA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGCCTCAGAAAGCTGCTTaGTCATCCCCAATCCTGCTT +
Preference number: 3 (lower is better)
Translates to: TNTDRLALILLQSIFIFQPQKAA*SSPILL
Trigger: AAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAGG...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR TCA 72 bp TCAATGAACATTATAAAGCTCAGTCTCTCACATGTCTaGCCTAAACTGCTCTGGGCCTCAAATGAGCACAAT +
Preference number: 3 (lower is better)
Translates to: SMNIIKLSLSHV*PKLLWASNEHN
Trigger: ATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGACATGTGAGAGACTGAGCTTTATAATGTTCATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR CCA 72 bp GTTTTACAAACAGCAATCATTGTATCAACACGGAAGTaGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTT +
Preference number: 3 (lower is better)
Translates to: VLQTAIIVSTRK*ICLGTLWHFSV
Trigger: AACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACAATGATTGCTGTTTGTAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
3UTR-3UTR CAA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCAAAAGAACATGGCACTaGTTTGTTTCTTCCCCTTCT +
Preference number: 3 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSKRTWH*FVSSPS
Trigger: AGAAGGGGAAGAAACAAACAAGTGCCATGTTCTTTT...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR TCA 72 bp GATAGGGGCAGAGTAAACACTGGTTTGGTAACAGGTTaGGAAAATATCCAAGACAGGATATTAAACTTTGGG +
Preference number: 3 (lower is better)
Translates to: DRGRVNTGLVTG*ENIQDRILNFG
Trigger: CCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAACCTGTTACCAAACCAGTGTTTACTCTGCCCCTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR TCA 72 bp ACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATaGCAGTTAGGAGTAGAAAATGTTAAGTTACTGTTA +
Preference number: 3 (lower is better)
Translates to: TFHLSFQVTLYA*QLGVENVKLLL
Trigger: TAACAGTAACTTAACATTTTCTACTCCTAACTGTCATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR-3UTR CAA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTACTAAGTGCTAACAACTaGGTAACAAAGCATCAAGAA +
Preference number: 3 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLLSANN*VTKHQE
Trigger: TTCTTGATGCTTTGTTACCAAGTTGTTAGCACTTAG...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAAGTGGGTACCACCCCTaGACTATGAGCCAGGCACAT +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRSGYHP*TMSQAH
Trigger: ATGTGCCTGGCTCATAGTGCAGGGGTGGTACCCACT...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGATGTCGCCTGGCTGCTTaGCATCAAAGCCCGTATGTA +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRCRLAA*HQSPYV
Trigger: TACATACGGGCTTTGATGTCAAGCAGCCAGGCGACA...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAAGTGGGTACCACCCCTaGACTATGAGCCAGGCACAT +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRSGYHP*TMSQAH
Trigger: ATGTGCCTGGCTCATAGTGCAGGGGTGGTACCCACT...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTATCCTGGGGGAGGCTGTaGGATTCCAGAACCTCCCCC +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLSWGRL*DSRTSP
Trigger: GGGGGAGGTTCTGGAATCCCACAGCCTCCCCCAGGA...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGATTCCGTACTCCTTCTTaGGTGCTGGACAGTTTGAGC +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRFRTPS*VLDSLS
Trigger: GCTCAAACTGTCCAGCACCCAAGAAGGAGTACGGAA...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp CCCAGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATACGTATCCTGGGGGAGGCTGTaGGATTCCAGAACCTCCCCC +
Preference number: 4 (lower is better)
Translates to: PSTDPSTLFNNFPLPRYVSWGRL*DSRTSP
Trigger: GGGGGAGGTTCTGGAATCCCACAGCCTCCCCCAGGA...TACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTCCTGGGGGAGGCTGTaGGATTCCAGAACCTCCCCC +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSSWGRL*DSRTSP
Trigger: GGGGGAGGTTCTGGAATCCCACAGCCTCCCCCAGGA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAATATCAGCCAAACTCTaGGAAGTGGGTACCACCCCT +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRISAKL*EVGTTP
Trigger: AGGGGTGGTACCCACTTCCCAGAGTTTGGCTGATAT...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCCCGTTCGAGCTGATCTaGGTCGGAGCCGGTCTCCAT +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSPFELI*VGAGLH
Trigger: ATGGAGACCGGCTCCGACTCAGATCAGCTCGAACGG...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATCTATCCTGCTGTGGCTaGGGTTTCCCTTCCATGGCA +
Preference number: 4 (lower is better)
Translates to: TKIRRCQYRRQTEWGPEDLSCCG*GFPSMA
Trigger: TGCCATGGAAGGGAAACCTCAGCCACAGCAGGATAG...ATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR TCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCACCACCCCTGCACTATaGGCCAGGCACATGCGCAAG +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSTTPAL*ARHMRK
Trigger: CTTGCGCATGTGCCTGGCTCATAGTGCAGGGGTGGT...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGGAGTTTGGGTGCGTGTaGTTTCAACATGGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQEFGCV*FQHGSC
Trigger: GCAGGAGCCATGTTGAAACCACACGCACCCAAACTC...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATCCAATAGACAGTACATaGCTGGCAAACCTCCAACCC +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHPIDST*LANLQP
Trigger: GGGTTGGAGGTTTGCCAGTCATGTACTGTCTATTGG...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAAAGTCCAAGAGCAGCTaGACAGTCTTTGGTTTCTCA +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRKSKSS*TVFGFS
Trigger: TGAGAAACCAAAGACTGTGCAGCTGCTCTTGGACTT...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGATCAAGTTCAGGCACCTaGTCAGCTTCTATGAACTTC +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRSSSGT*SASMNF
Trigger: GAAGTTCATAGAAGCTGAGCAGGTGCCTGAACTTGA...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGCGAATGATCTCCTCTTaGTCAGGCAAGAGGTCAGCA +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQRMISS*SGKRSA
Trigger: TGCTGACCTCTTGCCTGAGCAAGAGGAGATCATTCG...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATCGAATGATCTCCTCTTaGTCAGGCAAGAGGTCAGCA +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHRMISS*SGKRSA
Trigger: TGCTGACCTCTTGCCTGAGCAAGAGGAGATCATTCG...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGGAAGAGGACCATTTCTaGCGATTTCACCCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQEEDHF*RFHPRL
Trigger: CAGCCTTGGGTGAAATCGGCAGAAATGGTCCTCTTC...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATGAAGAGGACCATTTCTaGCGATTTCACCCAAGGCTG +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHEEDHF*RFHPRL
Trigger: CAGCCTTGGGTGAAATCGGCAGAAATGGTCCTCTTC...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGTTTCAGAGCCAGTTCTaGTGCCTTCCGTACAGACTC +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQFQSQF*CLPYRL
Trigger: GAGTCTGTACGGAAGGCAGCAGAACTGGCTCTGAAA...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp AGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAACATAAAAGCTCATTCCTaGGGGAGGCTGTGGGATTCC +
Preference number: 4 (lower is better)
Translates to: RCQYRRQTEWGPEDEGENIKAHS*GRLWDS
Trigger: GGAATCCCACAGCCTCCCCCAGGAATGAGCTTTTAT...GTTTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAAGGGAAACACCGTGCTaGCAAATTTCACTGCAACTT +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRRETPC*QISLQL
Trigger: AAGTTGCAGTGAAATTTGCCAGCACGGTGTTTCCCT...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAAAGCAGCACCCTTCCTaGAGTTCCACATTGCATGAT +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRKQHPS*SSTLHD
Trigger: ATCATGCAATGTGGAACTCCAGGAAGGGTGCTGCTT...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCGCAGGAGGACAGCAATaGTTCTCTGGCCAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSAGGQQ*FSGQLL
Trigger: GAGCAGCTGGCCAGAGAACCATTGCTGTCCTCCTGC...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATGCAGGGTCCTGGTACTaGACCAATAGTGTTTCTACT +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHAGSWY*TNSVST
Trigger: AGTAGAAACACTATTGGTTCAGTACCAGGACCCTGC...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAGGAAGGTATATGATCTaGGGGAAACACCGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLGRYMI*GKHRAG
Trigger: GCCAGCACGGTGTTTCCCTCAGATCATATACCTTCC...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGTGTCGCCTGGCTGCTTaGCATCAAAGCCCGTATGTA +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVCRLAA*HQSPYV
Trigger: TACATACGGGCTTTGATGTCAAGCAGCCAGGCGACA...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATACTCTTATTAGAAGATaGAGCTGTCGCCTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHTLIRR*SCRLAA
Trigger: AGCAGCCAGGCGACAGCTTCATCTTCTAATAAGAGT...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAGACACCAATTCTTGTTaGTCTTGTTCATTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRDTNSC*SCSLPS
Trigger: GCTGGGCAATGAACAAGATCAACAAGAATTGGTGTC...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGGCGTGACAAAGGAAACTaGAGCAGGGTCCTGGTACTG +
Preference number: 4 (lower is better)
Translates to: FSTTKIRRCQYRRQTEWGRDKGN*SRVLVL
Trigger: CAGTACCAGGACCCTGCTGCAGTTTCCTTTGTCACG...CCCCCATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR GCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGCGTGACAAAGGAAACTaGAGCAGGGTCCTGGTACTG +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVRDKGN*SRVLVL
Trigger: CAGTACCAGGACCCTGCTGCAGTTTCCTTTGTCACG...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGACAATTAAGCTCTGCTTaGTTTTCAACTCCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRQLSSA*FSTPGL
Trigger: CAGACCTGGAGTTGAAAAGCAAGCAGAGCTTAATTG...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAGCTGGCAAATTTCACTaGAACTTGCCGAACTTGAAC +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRAGKFH*NLPNLN
Trigger: GTTCAAGTTCGGCAAGTTGCAGTGAAATTTGCCAGC...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGAAGCCAGATGCAGGCTaGTTGCCTGACATGTGGGTT +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVKPDAG*LPDMWV
Trigger: AACCCACATGTCAGGCAAGCAGCCTGCATCTGGCTT...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGCTTCCAGCCAGGCCTTaGATCAATGCACTCAGGATC +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVLPARP*INALRI
Trigger: GATCCTGAGTGCATTGATGCAAGGCCTGGCTGGAAG...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGGTTCCTGGGCCATaGTTTGCCCAGGCTCTCAAA +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSWVPGP*FAQALK
Trigger: TTTGAGAGCCTGGGCAAAGCATGGCCCAGGAACCCA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGACTCTCCAAATGCTGCTaGATTAAATGGAAGGACTGT +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRLSKCC*IKWKDC
Trigger: ACAGTCCTTCCATTTAATCCAGCAGCATTTGGAGAG...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGGAAGTCCGAACTAAATaGCCCATGGCAAATGCACAG +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQEVRTK*PMANAQ
Trigger: CTGTGCATTTGCCATGGGCCATTTAGTTCGGACTTC...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp AGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAACCTAGAGCGCAGGAGATaGGGAACAATCTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: RCQYRRQTEWGPEDEGENLERRR*GTIFNF
Trigger: GAAGTTAAAGATTGTTCCTCATCTCCTGCGCTCTAG...GTTTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR TCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTAACCACCCCTGCACTATaGGCCAGGCACATGCGCAAG +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLTTPAL*ARHMRK
Trigger: CTTGCGCATGTGCCTGGCTCATAGTGCAGGGGTGGT...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGAGGATTTGGCAGCACTaGGTCGAGCACTGTCCATTA +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVRIWQH*VEHCPL
Trigger: TAATGGACAGTGCTCGACTCAGTGCTGCCAAATCCT...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGTCCCATACTTTCAAGTaGGTTCTTCTTGATGAGGGG +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQSHTFK*VLLDEG
Trigger: CCCCTCATCAAGAAGAACTCACTTGAAAGTATGGGA...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp AGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAACAAGTCCAAGAGCAGCTaGACAGTCTTTGGTTTCTCA +
Preference number: 4 (lower is better)
Translates to: RCQYRRQTEWGPEDEGENKSKSS*TVFGFS
Trigger: TGAGAAACCAAAGACTGTGCAGCTGCTCTTGGACTT...GTTTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR GCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGTCAAGTTCAGGCACCTaGTCAGCTTCTATGAACTTC +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQSSSGT*SASMNF
Trigger: GAAGTTCATAGAAGCTGAGCAGGTGCCTGAACTTGA...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAGTTGATCTTGTTCATTaGCCAGCTCATAAACCAACC +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRVDLVH*PAHKPT
Trigger: GGTTGGTTTATGAGCTGGGCAATGAACAAGATCAAC...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAATAAAAGCTCATTCCTaGGGGAGGCTGTGGGATTCC +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLIKAHS*GRLWDS
Trigger: GGAATCCCACAGCCTCCCCCAGGAATGAGCTTTTAT...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGGAAGCAATCACCAGGTaGAGAACAGCTTCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQEAITR*RTASSS
Trigger: TGAACTTGAAGCTGTTCTCCACCTGGTGATTGCTTC...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTGGGTGTCTGGGTTCCTaGGCCATGCTTTGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTGCLGS*AMLCPG
Trigger: GCCTGGGCAAAGCATGGCCCAGGAACCCAGACACCC...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TTTAATAATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGCCGTTCGAGCTGATCTaGGTCGGAGCCGGTCTCCAT +
Preference number: 4 (lower is better)
Translates to: FNNFPLPRYVGVNTEDRLPFELI*VGAGLH
Trigger: ATGGAGACCGGCTCCGACTCAGATCAGCTCGAACGG...CAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATTATTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR TCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGCTATCCTGCTGTGGCTaGGGTTTCCCTTCCATGGCA +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEELSCCG*GFPSMA
Trigger: TGCCATGGAAGGGAAACCTCAGCCACAGCAGGATAG...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTCCAATAGACAGTACATaGCTGGCAAACCTCCAACCC +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIPIDST*LANLQP
Trigger: GGGTTGGAGGTTTGCCAGTCATGTACTGTCTATTGG...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATCAACCCAAGCCCCTTTaGGGCAACATCTTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHQPKPL*GNILAE
Trigger: CTCAGCCAAGATGTTGCCTCAAAGGGGCTTGGGTTG...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATCAGTCAATTAAGCTCTaGTTGCTTTTCAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHQSIKL*LLFNSR
Trigger: CCTGGAGTTGAAAAGCAAGCAGAGCTTAATTGACTG...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGGCTTCAAAGAGCTGCTaGACAAGAGCTATATCCTTA +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQASKSC*TRAISL
Trigger: TAAGGATATAGCTCTTGTGCAGCAGCTCTTTGAAGC...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAAGGGCTTCAAAGAGCTaGTGCACAAGAGCTATATCC +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLRASKS*CTRAIS
Trigger: GGATATAGCTCTTGTGCAGCAGCTCTTTGAAGCCCT...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGATATCTCTCCAAATGCTaGTGGATTAAATGGAAGGAC +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRYLSKC*WIKWKD
Trigger: GTCCTTCCATTTAATCCAGCAGCATTTGGAGAGATA...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAAACTATCTCTCCAAATaGTGCTGGATTAAATGGAAG +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRNYLSK*CWIKWK
Trigger: CTTCCATTTAATCCAGCAGCATTTGGAGAGATAGTT...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATGCCCAGTGTTTGGATTaGTCGTTCTTTCATCTTGTT +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHAQCLD*SFFHLV
Trigger: AACAAGATGAAAGAACGAGCAATCCAAACACTGGGC...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATCCTGGGCCATGCTTTaGCCAGGCTCTCAAAGGCGC +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPSWAML*PGSQRR
Trigger: GCGCCTTTGAGAGCCTGGGCAAAGCATGGCCCAGGA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTTTCCGTACTCCTTCTTaGGTGCTGGACAGTTTGAGC +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIFRTPS*VLDSLS
Trigger: GCTCAAACTGTCCAGCACCCAAGAAGGAGTACGGAA...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCATAAAAGCTCATTCCTaGGGGAGGCTGTGGGATTCC +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSIKAHS*GRLWDS
Trigger: GGAATCCCACAGCCTCCCCCAGGAATGAGCTTTTAT...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCATATCAGCCAAACTCTaGGAAGTGGGTACCACCCCT +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSISAKL*EVGTTP
Trigger: AGGGGTGGTACCCACTTCCCAGAGTTTGGCTGATAT...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGATGTTTCCCACATTTCTaGAAGTTTGTCAATGACGTC +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRCFPHF*KFVNDV
Trigger: GACGTCATTGACAAACTTCCAGAAATGTGGGAAACA...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGATCACTACACAGGCAATaGCTTTCAATAGTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRSLHRQ*LSIVLP
Trigger: AGGAAGAACTATTGAAAGCCATTGCCTGTGTAGTGA...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGCTATCCTGCTGTGGCTaGGGTTTCCCTTCCATGGCA +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQLSCCG*GFPSMA
Trigger: TGCCATGGAAGGGAAACCTCAGCCACAGCAGGATAG...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTACTAGAGCGCAGGAGATaGGGAACAATCTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLLERRR*GTIFNF
Trigger: GAAGTTAAAGATTGTTCCTCATCTCCTGCGCTCTAG...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGCCATCATATACCACCTaGATGTTAGCTGGGAACGTT +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVPSYTT*MLAGNV
Trigger: AACGTTCCCAGCTAACATTCAGGTGGTATATGATGG...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTACCATCATATACCACCTaGATGTTAGCTGGGAACGTT +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLPSYTT*MLAGNV
Trigger: AACGTTCCCAGCTAACATTCAGGTGGTATATGATGG...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATGGAAGGTATATGATCTaGGGGAAACACCGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHGRYMI*GKHRAG
Trigger: GCCAGCACGGTGTTTCCCTCAGATCATATACCTTCC...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTATATCTGGAAGGTATATaGTCTGAGGGAAACACCGTG +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLYLEGI*SEGNTV
Trigger: CACGGTGTTTCCCTCAGATCATATACCTTCCAGATA...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTATACCAGATCTGGCTaGCTGAGATCACTTGCCAGA +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSYTRSG*LRSLAR
Trigger: TCTGGCAAGTGATCTCAGTCAGCCAGATCTGGTATA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGTGTTTTCTTCAATACTaGGGCTTTCTCCTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVCFLQY*GFLLQL
Trigger: GAGCTGCAGGAGAAAGCCTCAGTATTGAAGAAAACA...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGAAGTCCAAGAGCAGCTaGACAGTCTTTGGTTTCTCA +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVKSKSS*TVFGFS
Trigger: TGAGAAACCAAAGACTGTGCAGCTGCTCTTGGACTT...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TACCCACCCAGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATCAAGTTCAGGCACCTaGTCAGCTTCTATGAACTTC +
Preference number: 4 (lower is better)
Translates to: YPPSTDPSTLFNNFPLPRSSSGT*SASMNF
Trigger: GAAGTTCATAGAAGCTGAGCAGGTGCCTGAACTTGA...TCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACTGGGTGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCAGGGCTTCAAAGAGCTaGTGCACAAGAGCTATATCC +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSRASKS*CTRAIS
Trigger: GGATATAGCTCTTGTGCAGCAGCTCTTTGAAGCCCT...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATTATCTCTCCAAATGCTaGTGGATTAAATGGAAGGAC +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHYLSKC*WIKWKD
Trigger: GTCCTTCCATTTAATCCAGCAGCATTTGGAGAGATA...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAGAATCCATCAGACCTTaGAAAAGGAGTTTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLESIRP*KRSFWW
Trigger: CCACCAGAAACTCCTTTTGCAAGGTCTGATGGATTC...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGATGCAGGCTGCTTaGCTGACATGTGGGTTGGGG +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFQMQAA*LTCGLG
Trigger: CCCCAACCCACATGTCAGGCAAGCAGCCTGCATCTG...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTGGTTCTCTGGCCAGCTaGTCCTTTGGCAGGGTCACA +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTGSLAS*SFGRVT
Trigger: TGTGACCCTGCCAAAGGAGCAGCTGGCCAGAGAACC...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCAGTAGAGACTCCAGCTaGAGCTCTCTTTCCTTCTCA +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSSRDSS*SSLSFS
Trigger: TGAGAAGGAAAGAGAGCTGCAGCTGGAGTCTCTACT...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAATACGTTTATTCAGATaGACCAGCAGTTCCATTACT +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRIRLFR*TSSSIT
Trigger: AGTAATGGAACTGCTGGTCCATCTGAATAAACGTAT...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp AGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAACCAGCTGCACAGTCTTTaGTTTCTCAGCAAGATTAAA +
Preference number: 4 (lower is better)
Translates to: RCQYRRQTEWGPEDEGENQLHSL*FLSKIK
Trigger: TTTAATCTTGCTGAGAAACCAAAGACTGTGCAGCTG...GTTTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATCAGCTGCACAGTCTTTaGTTTCTCAGCAAGATTAAA +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHQLHSL*FLSKIK
Trigger: TTTAATCTTGCTGAGAAACCAAAGACTGTGCAGCTG...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAGAATTTTGGCGACTCTaGGATTCATTTAACACATAT +
Preference number: 4 (lower is better)
Translates to: HQETWRGSGWAFPLYKHREFWRL*DSFNTY
Trigger: ATATGTGTTAAATGAATCCCAGAGTCGCCAAAATTC...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp TACCCACCCAGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGACATCTGAATGTTAGCTaGGAACGTTTCAGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: YPPSTDPSTLFNNFPLPRHLNVS*ERFSSL
Trigger: CAAGCTGCTGAAACGTTCCCAGCTAACATTCAGATG...TCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACTGGGTGGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGCATTTCTGGAAAAGATaGCATCTGCTTAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQHFWKR*HLLRST
Trigger: AGTGCTTCTAAGCAGATGCCATCTTTTCCAGAAATG...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATCCAAACTCTGGGAAGTaGGTACCACCCCTGCACTAT +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHPNSGK*VPPLHY
Trigger: ATAGTGCAGGGGTGGTACCCACTTCCCAGAGTTTGG...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGCCAAACTCTGGGAAGTaGGTACCACCCCTGCACTAT +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEPNSGK*VPPLHY
Trigger: ATAGTGCAGGGGTGGTACCCACTTCCCAGAGTTTGG...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGTTTATATACCAGATCTaGCTGACTGAGATCACTTGC +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQFIYQI*LTEITC
Trigger: GCAAGTGATCTCAGTCAGCCAGATCTGGTATATAAA...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR CAA 72 bp GAAAGCAGGAAAAAGACCCTGGCAACAACAGTTTACTaGAAGTGGTATCATGCTAATTTGAGAGCGGGCACT +
Preference number: 4 (lower is better)
Translates to: ESRKKTLATTVY*KWYHANLRAGT
Trigger: AGTGCCCGCTCTCAAATTAGCATGATACCACTTCAAGTAAACTGTTGTTGCCAGGGTCTTTTTCCTGCTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp AGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATACGTAGGTGCAGGGTCCTGGTACTaGACCAATAGTGTTTCTACT +
Preference number: 4 (lower is better)
Translates to: STDPSTLFNNFPLPRYVGAGSWY*TNSVST
Trigger: AGTAGAAACACTATTGGTTCAGTACCAGGACCCTGC...ACCTACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR TCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGCCTGCTCAGCTTCTATaGACTTCACTATACCCAATT +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVPAQLL*TSLYPI
Trigger: AATTGGGTATAGTGAAGTTCATAGAAGCTGAGCAGG...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTACCTGCTCAGCTTCTATaGACTTCACTATACCCAATT +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLPAQLL*TSLYPI
Trigger: AATTGGGTATAGTGAAGTTCATAGAAGCTGAGCAGG...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCCTAGAGCGCAGGAGATaGGGAACAATCTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSLERRR*GTIFNF
Trigger: GAAGTTAAAGATTGTTCCTCATCTCCTGCGCTCTAG...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGGCAACTTGCCGAACTTaGACTTCAGGCTTTATTAAG +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVATCRT*TSGFIK
Trigger: CTTAATAAAGCCTGAAGTTCAAGTTCGGCAAGTTGC...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAGCAACTTGCCGAACTTaGACTTCAGGCTTTATTAAG +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLATCRT*TSGFIK
Trigger: CTTAATAAAGCCTGAAGTTCAAGTTCGGCAAGTTGC...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCCAAGGCCACCCCCTTaGAATACCACTGTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFPRPPP*NTTVSP
Trigger: TGGAGAGACAGTGGTATTTCAAGGGGGTGGCCTTGG...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCCAGATCTGGCTGACTaGGATCACTTGCCAGAGAGC +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFPDLAD*DHLPES
Trigger: GCTCTCTGGCAAGTGATCTCAGTCAGCCAGATCTGG...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATCTAAGAGTGCTGGTATaGGTTTGGGTGCGTGTGGTT +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHLRVLV*VWVRVV
Trigger: AACCACACGCACCCAAACTCATACCAGCACTCTTAG...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCGCACTTTCCACGTGCTaGGTCTTAGCCGCTCACACA +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFALSTC*VLAAHT
Trigger: TGTGTGAGCGGCTAAGACTCAGCACGTGGAAAGTGC...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTACGTGACAAAGGAAACTaGAGCAGGGTCCTGGTACTG +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLRDKGN*SRVLVL
Trigger: CAGTACCAGGACCCTGCTGCAGTTTCCTTTGTCACG...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATAATAACTCGTTTAGCTaGATAAAAGCTCATTCCTGG +
Preference number: 4 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHNNSFS*IKAHSW
Trigger: CCAGGAATGAGCTTTTATGCAGCTAAACGAGTTATT...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGCAGTCAATTAAGCTCTaGTTGCTTTTCAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVQSIKL*LLFNSR
Trigger: CCTGGAGTTGAAAAGCAAGCAGAGCTTAATTGACTG...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGGAAACATCAAGATATTaGAGGCACATGTTGATTGTC +
Preference number: 4 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQETSRY*RHMLIV
Trigger: GACAATCAACATGTGCCTGCAATATCTTGATGTTTC...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGAAGTCCTCTGCATTCTaGTGTCAAACTTTCCCATTG +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVKSSAF*CQTFPL
Trigger: CAATGGGAAAGTTTGACAGCAGAATGCAGAGGACTT...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp GTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAACGTCTATACGTTTATTCAGATaGACCAGCAGTTCCATTACT +
Preference number: 4 (lower is better)
Translates to: VNTEDRLNGGQKMREKTSIRLFR*TSSSIT
Trigger: AGTAATGGAACTGCTGGTCCATCTGAATAAACGTAT...AGACGTTTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTACTGGAAGCTGTATTTTaGGGCGGCTTTTTATACGTT +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLLEAVF*GGFLYV
Trigger: AACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAG...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAGTAATATACCATTTCTaGAAAAGATGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: IQDRILNFGSVALAPGLRVIYHF*KRWHLL
Trigger: AAGCAGATGCCATCTTTTCCAGAAATGGTATATTAC...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR CAA 72 bp CCTCAGCACACAATCGCTATGTGGTGGTTTTTAATTTaGGGAACCATAATAGGTCTATGTAAGGGGTTGGGA +
Preference number: 4 (lower is better)
Translates to: PQHTIAMWWFLI*GTIIGLCKGLG
Trigger: TCCCAACCCCTTACATAGACCTATTATGGTTCCCAAAATTAAAAACCACCACATAGCGATTGTGTGCTGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATGCAGGGTCCTGGTACTaGACCAATAGTGTTTCTACT +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHAGSWY*TNSVST
Trigger: AGTAGAAACACTATTGGTTCAGTACCAGGACCCTGC...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp CCCAGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATACGTACCTGCTCAGCTTCTATaGACTTCACTATACCCAATT +
Preference number: 4 (lower is better)
Translates to: PSTDPSTLFNNFPLPRYVPAQLL*TSLYPI
Trigger: AATTGGGTATAGTGAAGTTCATAGAAGCTGAGCAGG...TACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR TCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGCCAATAGCCGGAGCATaGTCTTGCATATCAGCCAAA +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEPIAGA*SCISAK
Trigger: TTTGGCTGATATGCAAGATCATGCTCCGGCTATTGG...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATACTCTTATTAGAAGATaGAGCTGTCGCCTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHTLIRR*SCRLAA
Trigger: AGCAGCCAGGCGACAGCTTCATCTTCTAATAAGAGT...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCAGGCGAGGAACTAGTTaGGGCAGAAAAGGAGCCAGT +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFRRGTS*GRKGAS
Trigger: ACTGGCTCCTTTTCTGCCTCAACTAGTTCCTCGCCT...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CCCAGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATACGTACAGTCAATTAAGCTCTaGTTGCTTTTCAACTCCAGG +
Preference number: 4 (lower is better)
Translates to: PSTDPSTLFNNFPLPRYVQSIKL*LLFNSR
Trigger: CCTGGAGTTGAAAAGCAAGCAGAGCTTAATTGACTG...TACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR GCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAGGAAAAGATGGCATCTaGTTAGAAGCACTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLGKDGI*LEALSF
Trigger: AAAGGAAAGTGCTTCTAAGCAGATGCCATCTTTTCC...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTGCCCAGTGTTTGGATTaGTCGTTCTTTCATCTTGTT +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIAQCLD*SFFHLV
Trigger: AACAAGATGAAAGAACGAGCAATCCAAACACTGGGC...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCGACCATCAGGTGTTTTaGCAAGGCCACCCCCTTGAA +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFDHQVF*QGHPLE
Trigger: TTCAAGGGGGTGGCCTTGGCAAAACACCTGATGGTC...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTTTTCAACATGGCTCCTaGACTTTTGCTGATCTTCAC +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIFQHGS*TFADLH
Trigger: GTGAAGATCAGCAAAAGTGCAGGAGCCATGTTGAAA...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGGCTCACACATCAGTTTaGACAGCTCCTGCCGATAAC +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQAHTSV*TAPADN
Trigger: GTTATCGGCAGGAGCTGTGCAAACTGATGTGTGAGC...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATGGAGGACACCTAGCTaGACTTTCCACGTGCTGAGT +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPWRTPS*TFHVLS
Trigger: ACTCAGCACGTGGAAAGTGCAGCTAGGTGTCCTCCA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp CCCAGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATACGTACTGGAAGCTGTATTTTaGGGCGGCTTTTTATACGTT +
Preference number: 4 (lower is better)
Translates to: PSTDPSTLFNNFPLPRYVLEAVF*GGFLYV
Trigger: AACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAG...TACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp AATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGAAGCAATCACCAGGTaGAGAACAGCTTCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: NFPLPRYVGVNTEDRLNGEAITR*RTASSS
Trigger: TGAACTTGAAGCTGTTCTCCACCTGGTGATTGCTTC...CCCATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGCACCTGAATGTTAGCTaGGAACGTTTCAGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEHLNVS*ERFSSL
Trigger: CAAGCTGCTGAAACGTTCCCAGCTAACATTCAGGTG...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTACATTTCTGGAAAAGATaGCATCTGCTTAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLHFWKR*HLLRST
Trigger: AGTGCTTCTAAGCAGATGCCATCTTTTCCAGAAATG...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCGGCCAGCTGCTCCTTTaGCAGGGTCACACATTTTCA +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFGQLLL*QGHTFS
Trigger: TGAAAATGTGTGACCCTGCCAAAGGAGCAGCTGGCC...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCAACAGCAATGGTTCTCTaGCCAGCTGCTCCTTTGGCA +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPTAMVL*PAAPLA
Trigger: TGCCAAAGGAGCAGCTGGCCAGAGAACCATTGCTGT...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCGAATTTCATTTGTGGTaGGTTGATTGGGCACAGACT +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSEFHLW*VDWAQT
Trigger: AGTCTGTGCCCAATCAACCCACCACAAATGAAATTC...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGGGAATCTGTCTTCTTTaGTGGCTTTCAAAACATCAG +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVGICLL*WLSKHQ
Trigger: CTGATGTTTTGAAAGCCACCAAAGAAGACAGATTCC...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTAATGCACAGGATTTCTaGATTACACTGTTCCGATCT +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVINAQDF*ITLFRS
Trigger: AGATCGGAACAGTGTAATTCAGAAATCCTGTGCATT...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGCCATGTACCAGCCATTaGGCTTCTGTAGCAGTTTCT +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQPCTSH*ASVAVS
Trigger: AGAAACTGCTACAGAAGCTCAATGGCTGGTACATGG...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGGCTGGCAAATTTCACTaGAACTTGCCGAACTTGAAC +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEAGKFH*NLPNLN
Trigger: GTTCAAGTTCGGCAAGTTGCAGTGAAATTTGCCAGC...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGCTGAGGGAAACACCGTaGTGGCAAATTTCACTGCAA +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQLRETP*WQISLQ
Trigger: TTGCAGTGAAATTTGCCAGCACGGTGTTTCCCTCAG...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTACTGAGGGAAACACCGTaGTGGCAAATTTCACTGCAA +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLLRETP*WQISLQ
Trigger: TTGCAGTGAAATTTGCCAGCACGGTGTTTCCCTCAG...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATCCAGGTACATTTTCCTaGCACACTTCAGTCCACATA +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHPGTFS*HTSVHI
Trigger: TATGTGGACTGAAGTGTGGCAGGAAAATGTACCTGG...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTCAATCAGAAGTCCTCTaGATTCTGCTGTCAAACTTT +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIQSEVL*ILLSNF
Trigger: AAAGTTTGACAGCAGAATGCAGAGGACTTCTGATTG...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp AATAATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATTTCCGTACTCCTTCTTaGGTGCTGGACAGTTTGAGC +
Preference number: 4 (lower is better)
Translates to: NNFPLPRYVGVNTEDRLNFRTPS*VLDSLS
Trigger: GCTCAAACTGTCCAGCACCCAAGAAGGAGTACGGAA...ATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCTGCTTGCCTGACATGTaGGTTGGGGCTGATGATATG +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFCLPDM*VGADDM
Trigger: CATATCATCAGCCCCAACCCACATGTCAGGCAAGCA...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGAGAACTTCTTTAGCATaGTTCTTCAATACATCTGGG +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVRTSLA*FFNTSG
Trigger: CCCAGATGTATTGAAGAACCATGCTAAAGAAGTTCT...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCAAGGCGTTCATTGACTaGAGGACACCTAGCTGCACT +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFKAFID*RTPSCT
Trigger: AGTGCAGCTAGGTGTCCTCCAGTCAATGAACGCCTT...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGTATCTGGAAGGTATATaGTCTGAGGGAAACACCGTG +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQYLEGI*SEGNTV
Trigger: CACGGTGTTTCCCTCAGATCATATACCTTCCAGATA...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTCCAATAGCCGGAGCATaGTCTTGCATATCAGCCAAA +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTPIAGA*SCISAK
Trigger: TTTGGCTGATATGCAAGATCATGCTCCGGCTATTGG...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCTCACCAATAGTGAACTaGAGCTCAATCTGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFSPIVN*SSICLA
Trigger: GGCCAAGCAGATTGAGCTTCAGTTCACTATTGGTGA...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTTATCTTCCAATTGCATaGATTGTCAAAGCACAAGAC +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIYLPIA*IVKAQD
Trigger: GTCTTGTGCTTTGACAATTCATGCAATTGGAAGATA...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTTCATTTGTGGTGGGTTaGTTGGGCACAGACTTTTCC +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTSFVVG*LGTDFS
Trigger: GGAAAAGTCTGTGCCCAATCAACCCACCACAAATGA...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATTCCTTCAAGACAGCCTaGAGAATTTCATTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHSFKTA*RISFVV
Trigger: CACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGA...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATACGTAGGTGTCAATAACTCGTTTAGCTaGATAAAAGCTCATTCCTGG +
Preference number: 4 (lower is better)
Translates to: TDPSTLFNNFPLPRYVGVNNSFS*IKAHSW
Trigger: CCAGGAATGAGCTTTTATGCAGCTAAACGAGTTATT...GACACCTACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCAATAACTCGTTTAGCTaGATAAAAGCTCATTCCTGG +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSNNSFS*IKAHSW
Trigger: CCAGGAATGAGCTTTTATGCAGCTAAACGAGTTATT...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATCAATTAAGCTCTGCTTaGTTTTCAACTCCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHQLSSA*FSTPGL
Trigger: CAGACCTGGAGTTGAAAAGCAAGCAGAGCTTAATTG...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTCATCAGCAATTTCATaGATGCCTAGAAATGCTAAG +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSSSAIS*MPRNAK
Trigger: CTTAGCATTTCTAGGCATGCATGAAATTGCTGATGA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATAGTAATCAATTCCTaGAGGTACAATCGAATACCT +
Preference number: 4 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVIVINS*RYNRIP
Trigger: AGGTATTCGATTGTACCTGCAGGAATTGATTACTAT...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCTTTCCAACTCTGTACTaGAAGCCGTCACTACACAGG +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFFPTLY*KPSLHR
Trigger: CCTGTGTAGTGACGGCTTGCAGTACAGAGTTGGAAA...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTTTCAAAACATCAGCTaGACAGCTGATTGCAACAAT +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSFQNIS*TADCNN
Trigger: ATTGTTGCAATCAGCTGTGCAGCTGATGTTTTGAAA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTAGAAGCAATCACCAGGTaGAGAACAGCTTCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLEAITR*RTASSS
Trigger: TGAACTTGAAGCTGTTCTCCACCTGGTGATTGCTTC...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCACCTGAATGTTAGCTaGGAACGTTTCAGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFHLNVS*ERFSSL
Trigger: CAAGCTGCTGAAACGTTCCCAGCTAACATTCAGGTG...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGTCCTTAGTGAATAAATaGGGCATTCGACTGGAGAGT +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEESLVNK*GIRLES
Trigger: ACTCTCCAGTCGAATGCCCCATTTATTCACTAAGGA...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGAGGGAAACACCGTGCTaGCAAATTTCACTGCAACTT +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQRETPC*QISLQL
Trigger: AAGTTGCAGTGAAATTTGCCAGCACGGTGTTTCCCT...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTGGTCATATATTTGACTaGAGTTTTCATTCGATGGGA +
Preference number: 4 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIGHIFD*SFHSMG
Trigger: TCCCATCGAATGAAAACTCCAGTCAAATATATGACC...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATCTCTCCAAATGCTGCTaGATTAAATGGAAGGACTGT +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHLSKCC*IKWKDC
Trigger: ACAGTCCTTCCATTTAATCCAGCAGCATTTGGAGAG...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGTTGTGGTGGGTTGATTaGGCACAGACTTTTCCAACT +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQLWWVD*AQTFPT
Trigger: AGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAA...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTAACTTTTGGTATCTGTTaGCACTGCATGCGGGTGATA +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLTFGIC*HCMRVI
Trigger: TATCACCCGCATGCAGTGCCAACAGATACCAAAAGT...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTATCCAATGCCCACTTTTaGTATCTGTTGGCACTGCAT +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLSNAHF*YLLALH
Trigger: ATGCAGTGCCAACAGATACCAAAAGTGGGCATTGGA...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTCCATTGACTTGTCAGTaGCCAATGCATTCCAAATGC +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTPLTCQ*PMHSKC
Trigger: GCATTTGGAATGCATTGGTCACTGACAAGTCAATGG...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTACTCATAAGTTTACCTaGGTAAGGTGTCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTTHKFT*VRCQVL
Trigger: CAGGACCTGACACCTTACTCAGGTAAACTTATGAGT...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCGTTGGTATTAAAAGATaGATTAAGCTATCCTGCTGT +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSVGIKR*IKLSCC
Trigger: ACAGCAGGATAGCTTAATGCATCTTTTAATACCAAC...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTAGCTTCAAAGAGCTGCTaGACAAGAGCTATATCCTTA +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLASKSC*TRAISL
Trigger: TAAGGATATAGCTCTTGTGCAGCAGCTCTTTGAAGC...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATGGAAAAGATGGCATCTaGTTAGAAGCACTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHGKDGI*LEALSF
Trigger: AAAGGAAAGTGCTTCTAAGCAGATGCCATCTTTTCC...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCAGAATCCATCAGACCTTaGAAAAGGAGTTTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPESIRP*KRSFWW
Trigger: CCACCAGAAACTCCTTTTGCAAGGTCTGATGGATTC...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGATGGCCCATGGCAAATaGACAGGATTTCTGAATTAC +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQMAHGK*TGFLNY
Trigger: GTAATTCAGAAATCCTGTGCATTTGCCATGGGCCAT...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATCAGCTGCACAGTCTTTaGTTTCTCAGCAAGATTAAA +
Preference number: 4 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHQLHSL*FLSKIK
Trigger: TTTAATCTTGCTGAGAAACCAAAGACTGTGCAGCTG...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCGAATTTTGGCGACTCTaGGATTCATTTAACACATAT +
Preference number: 4 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSEFWRL*DSFNTY
Trigger: ATATGTGTTAAATGAATCCCAGAGTCGCCAAAATTC...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATTTCATCTTCAGCTTTaGTGGTACGGACTCCCATAC +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPFHLQL*WYGLPY
Trigger: GTATGGGAGTCCGTACCACCAAAGCTGAAGATGAAA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
3UTR CAA 72 bp TTAGAAATTCTGATGATGTTTTACAAACAGCAATCATaGTATCAACACGGAAGTGGATCTGCCTTGGTACCC +
Preference number: 4 (lower is better)
Translates to: LEILMMFYKQQS*YQHGSGSALVP
Trigger: GGGTACCAAGGCAGATCCACTTCCGTGTTGATACAATGATTGCTGTTTGTAAAACATCATCAGAATTTCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGTTCCGGTCATATATTTaGCTGGAGTTTTCATTCGAT +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEFRSYI*LEFSFD
Trigger: ATCGAATGAAAACTCCAGTCAAATATATGACCGGAA...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp CTGTTTAATAATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACAATTAAGCTCTGCTTaGTTTTCAACTCCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: LFNNFPLPRYVGVNTEDRQLSSA*FSTPGL
Trigger: CAGACCTGGAGTTGAAAAGCAAGCAGAGCTTAATTG...TCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATTATTAAACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR GCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTAAAGCTTTCTACGAGGTaGAGTTTAGTAAATCCAGAC +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLKLSTR*SLVNPD
Trigger: GTCTGGATTTACTAAACTGCACCTCGTAGAAAGCTT...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR GCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCAAGAGTTAGTTCCTATTaGAGCACTGGTAATGGCTTC +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPRVSSY*STGNGF
Trigger: GAAGCCATTACCAGTGCTGCAATAGGAACTAACTCT...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGCTTGTCAGTGACCAATaGATTCCAAATGCTTGTCAT +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQLVSDQ*IPNACH
Trigger: ATGACAAGCATTTGGAATGCATTGGTCACTGACAAG...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCACAGCAATTTCATGCATaGCTAGAAATGCTAAGGGCA +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPQQFHA*LEMLRA
Trigger: TGCCCTTAGCATTTCTAGGCATGCATGAAATTGCTG...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCACTGGAAGCTGTATTTTaGGGCGGCTTTTTATACGTT +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPLEAVF*GGFLYV
Trigger: AACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAG...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp AATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGAATTTTGGCGACTCTaGGATTCATTTAACACATAT +
Preference number: 4 (lower is better)
Translates to: NFPLPRYVGVNTEDRLNGEFWRL*DSFNTY
Trigger: ATATGTGTTAAATGAATCCCAGAGTCGCCAAAATTC...CCCATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCTCCTTAGTGAATAAATaGGGCATTCGACTGGAGAGT +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFSLVNK*GIRLES
Trigger: ACTCTCCAGTCGAATGCCCCATTTATTCACTAAGGA...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGGGTCATATATTTGACTaGAGTTTTCATTCGATGGGA +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEGHIFD*SFHSMG
Trigger: TCCCATCGAATGAAAACTCCAGTCAAATATATGACC...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTGAAGAATTTCATTTGTaGTGGGTTGATTGGGCACAG +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTEEFHL*WVDWAQ
Trigger: CTGTGCCCAATCAACCCACCACAAATGAAATTCTTC...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTACAAGTTAAACAAATGTaGTGTACAAATTGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLQVKQM*CTNCRD
Trigger: GTCCCTGCAATTTGTACATCACATTTGTTTAACTTG...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR TCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCGAAACAAATGCGCTCTaGATTTCTTTAAGATGGGAC +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFETNAL*ISLRWD
Trigger: GTCCCATCTTAAAGAAATTCAGAGCGCATTTGTTTC...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTCATCAGCTGCACAGCTaGTTGCAACAATCTTATATT +
Preference number: 4 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTHQLHS*LQQSYI
Trigger: AATATAAGATTGTTGCAATCAGCTGTGCAGCTGATG...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGAACTATCTCTCCAAATaGTGCTGGATTAAATGGAAG +
Preference number: 4 (lower is better)
Translates to: TNTDRLALILLQSIFIFQNYLSK*CWIKWK
Trigger: CTTCCATTTAATCCAGCAGCATTTGGAGAGATAGTT...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCAAGCTTTCTACGAGGTaGAGTTTAGTAAATCCAGAC +
Preference number: 4 (lower is better)
Translates to: ITNTDRLALILLQSIFIFKLSTR*SLVNPD
Trigger: GTCTGGATTTACTAAACTGCACCTCGTAGAAAGCTT...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGGTAATATACCATTTCTaGAAAAGATGGCATCTGCTT +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEVIYHF*KRWHLL
Trigger: AAGCAGATGCCATCTTTTCCAGAAATGGTATATTAC...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGTATGATTGTCTTTTGTaGCCTTTATCAGCTGTTCTA +
Preference number: 4 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEYDCLL*PLSAVL
Trigger: TAGAACAGCTGATAAAGGCCACAAAAGACAATCATA...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCAATCTGTCTTCTTTGGTaGCTTTCAAAACATCAGCTG +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPICLLW*LSKHQL
Trigger: CAGCTGATGTTTTGAAAGCCACCAAAGAAGACAGAT...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCACAAGTTAAACAAATGTaGTGTACAAATTGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPQVKQM*CTNCRD
Trigger: GTCCCTGCAATTTGTACATCACATTTGTTTAACTTG...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR TCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATTCCGGTCATATATTTaGCTGGAGTTTTCATTCGAT +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPFRSYI*LEFSFD
Trigger: ATCGAATGAAAACTCCAGTCAAATATATGACCGGAA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR GCA 90 bp CCATCCACACTGTTTAATAATTTTCCACTACCAAGATACGTAGGTGTCAATACAGTTGGTATTAAAAGATaGATTAAGCTATCCTGCTGT +
Preference number: 4 (lower is better)
Translates to: PSTLFNNFPLPRYVGVNTVGIKR*IKLSCC
Trigger: ACAGCAGGATAGCTTAATGCATCTTTTAATACCAAC...TGTATTGACACCTACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR GCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCAAGCTGCACAGCTGATTaGAACAATCTTATATTTGAG +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPSCTAD*NNLIFE
Trigger: CTCAAATATAAGATTGTTGCAATCAGCTGTGCAGCT...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATTTGAGGCAACATCTTaGCTGAGTTCATCATTTTCT +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPFEATS*LSSSFS
Trigger: AGAAAATGATGAACTCAGCCAAGATGTTGCCTCAAA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATATGATTGTCTTTTGTaGCCTTTATCAGCTGTTCTA +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPYDCLL*PLSAVL
Trigger: TAGAACAGCTGATAAAGGCCACAAAAGACAATCATA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CCA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCAGATTGTAAAGCCTTCTaGGTAATAGTAATCAATTCC +
Preference number: 4 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPDCKAF*VIVINS
Trigger: GGAATTGATTACTATTACCCAGAAGGCTTTACAATC...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 90 bp GACTCATCATTCCTTTGTCCAGAAGGCAGGGCAGGAGGACAGCAATaGTTCTCTGGCCAGCTGCTCCTTTGGCAGGGTCACACATTTTCA +
Preference number: 5 (lower is better)
Translates to: DSSFLCPEGRAGGQQ*FSGQLLLWQGHTFS
Trigger: TGAAAATGTGTGACCCTGCCAAAGGAGCAGCTGGCCAGAGAACCATTGCTGTCCTCCTGCCCTGCCTTCTGGACAAAGGAATGATGAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAGCCAAGGCCACCCCCTaGAAATACCACTGTCTCTCC +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRAKATP*KYHCLS
Trigger: GGAGAGACAGTGGTATTTCAAGGGGGTGGCCTTGGC...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 90 bp CTGCTTGACATCAAAGCCCGTATGTACCGTCCAATAGCCGGAGCATaGTCTTGCATATCAGCCAAACTCTGGGAAGTGGGTACCACCCCT +
Preference number: 5 (lower is better)
Translates to: LLDIKARMYRPIAGA*SCISAKLWEVGTTP
Trigger: AGGGGTGGTACCCACTTCCCAGAGTTTGGCTGATATGCAAGATCATGCTCCGGCTATTGGACGGTACATACGGGCTTTGATGTCAAGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS CCA 90 bp GCTGTCGCGACACTATGGCGTGTGTCACTAGAAGCAATCACCAGGTaGAGAACAGCTTCAAGTTCAGGCACCTGCTCAGCTTCTATGAAC +
Preference number: 5 (lower is better)
Translates to: AVATLWRVSLEAITR*RTASSSGTCSASMN
Trigger: GTTCATAGAAGCTGAGCAGGTGCCTGAACTTGAAGCTGTTCTCCACCTGGTGATTGCTTCTAGTGACACACGCCATAGTGTCGCGACAGC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 90 bp TCCTCTTCCAGAAGCATTAACCCCTGGAAAAAGGCGTTCATTGACTaGAGGACACCTAGCTGCACTTTCCACGTGCTGAGTCTTAGCCGC +
Preference number: 5 (lower is better)
Translates to: SSSRSINPWKKAFID*RTPSCTFHVLSLSR
Trigger: GCGGCTAAGACTCAGCACGTGGAAAGTGCAGCTAGGTGTCCTCCAGTCAATGAACGCCTTTTTCCAGGGGTTAATGCTTCTGGAAGAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAAGGGGCCAGCTCACATaGTTTTTCCACTGGCAGGCG +
Preference number: 5 (lower is better)
Translates to: IRRCQYRRQTEWGPEDEGRGQLT*FFHWQA
Trigger: CGCCTGCCAGTGGAAAAACAATGTGAGCTGGCCCCT...TCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCTACGTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS TCA 90 bp TGCATATCAGCCAAACTCTGGGAAGTGGGTACCACCCCTGCACTATaGGCCAGGCACATGCGCAAGTACAGAACTATCTCTCCAAATGCT +
Preference number: 5 (lower is better)
Translates to: CISAKLWEVGTTPAL*ARHMRKYRTISPNA
Trigger: AGCATTTGGAGAGATAGTTCTGTACTTGCGCATGTGCCTGGCTCATAGTGCAGGGGTGGTACCCACTTCCCAGAGTTTGGCTGATATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS GCA 90 bp CAACTGTTCAGGTGTCCACGGGTTGTCACCAATAACTCGTTTAGCTaGATAAAAGCTCATTCCTGGGGGAGGCTGTGGGATTCCAGAACC +
Preference number: 5 (lower is better)
Translates to: QLFRCPRVVTNNSFS*IKAHSWGRLWDSRT
Trigger: GGTTCTGGAATCCCACAGCCTCCCCCAGGAATGAGCTTTTATGCAGCTAAACGAGTTATTGGTGACAACCCGTGGACACCTGAACAGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000134848.2
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS-3UTR CAA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGCCAGATGCAGGCTGCTaGCCTGACATGTGGGTTGGG +
Preference number: 5 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVPDAGC*PDMWVG
Trigger: CCCAACCCACATGTCAGGCAAGCAGCCTGCATCTGG...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGACAGAAAAGGAGCCAGTaGTTCTCCAGCTCTGGTAGC +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRQKRSQ*FSSSGS
Trigger: GCTACCAGAGCTGGAGAACAACTGGCTCCTTTTCTG...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 90 bp CGTGGGTCTCCTGCAGCTAGTAGGAGCAAGTATCTGGAAGGTATATaGTCTGAGGGAAACACCGTGCTGGCAAATTTCACTGCAACTTGC +
Preference number: 5 (lower is better)
Translates to: RGSPAASRSKYLEGI*SEGNTVLANFTATC
Trigger: GCAAGTTGCAGTGAAATTTGCCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGATACTTGCTCCTACTAGCTGCAGGAGACCCACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS GCA 90 bp AGTCACCAGCCAGGCATCTCGGGCAGCCACAGAGTTAGTTCCTATTaGAGCACTGGTAATGGCTTCACCAATAGTGAACTGAAGCTCAAT +
Preference number: 5 (lower is better)
Translates to: SHQPGISGSHRVSSY*STGNGFTNSELKLN
Trigger: ATTGAGCTTCAGTTCACTATTGGTGAAGCCATTACCAGTGCTGCAATAGGAACTAACTCTGTGGCTGCCCGAGATGCCTGGCTGGTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 90 bp GAGTGCTGGTATGAGTTTGGGTGCGTGTGGTTTCAACATGGCTCCTaGACTTTTGCTGATCTTCACAAGAGTGTTAATGCTGAGGGCTCG +
Preference number: 5 (lower is better)
Translates to: ECWYEFGCVWFQHGS*TFADLHKSVNAEGS
Trigger: CGAGCCCTCAGCATTAACACTCTTGTGAAGATCAGCAAAAGTGCAGGAGCCATGTTGAAACCACACGCACCCAAACTCATACCAGCACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 90 bp ATTAACCCCTGGAAAAAGGCGTTCATTGACTGGAGGACACCTAGCTaGACTTTCCACGTGCTGAGTCTTAGCCGCTCACACATCAGTTTG +
Preference number: 5 (lower is better)
Translates to: INPWKKAFIDWRTPS*TFHVLSLSRSHISL
Trigger: CAAACTGATGTGTGAGCGGCTAAGACTCAGCACGTGGAAAGTGCAGCTAGGTGTCCTCCAGTCAATGAACGCCTTTTTCCAGGGGTTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp GTAGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAGAACGTTTCAGCAGCTaGTCTAGAGCGCAGGAGATG +
Preference number: 5 (lower is better)
Translates to: VGVNTEDRLNGGQKMREKERFSS*SRAQEM
Trigger: CATCTCCTGCGCTCTAGACAAGCTGCTGAAACGTTC...TTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp CTCAGAAAGCTGCTTTGTCATCCCCAATCCTGCTTCATAGGGAGTGACTTACAGTCTTCCAGCCAGGCCTaGCATCAATGCACTCAGGAT +
Preference number: 5 (lower is better)
Translates to: LRKLLCHPQSCFIGSDLQSSSQA*HQCTQD
Trigger: ATCCTGAGTGCATTGATGCAAGGCCTGGCTGGAAGA...CTGTAAGTCACTCCCTATGAAGCAGGATTGGGGATGACAAAGCAGCTTTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS GCA 90 bp AGCCGAGTCTCCGGTTCTTCCTTACAGAGGGCTTCAAAGAGCTGCTaGACAAGAGCTATATCCTTAGTGAATAAATGGGGCATTCGACTG +
Preference number: 5 (lower is better)
Translates to: SRVSGSSLQRASKSC*TRAISLVNKWGIRL
Trigger: CAGTCGAATGCCCCATTTATTCACTAAGGATATAGCTCTTGTGCAGCAGCTCTTTGAAGCCCTCTGTAAGGAAGAACCGGAGACTCGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS GCA 90 bp GCAAGCCGAGTCTCCGGTTCTTCCTTACAGAGGGCTTCAAAGAGCTaGTGCACAAGAGCTATATCCTTAGTGAATAAATGGGGCATTCGA +
Preference number: 5 (lower is better)
Translates to: ASRVSGSSLQRASKS*CTRAISLVNKWGIR
Trigger: TCGAATGCCCCATTTATTCACTAAGGATATAGCTCTTGTGCAGCAGCTCTTTGAAGCCCTCTGTAAGGAAGAACCGGAGACTCGGCTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 90 bp GGACTTCTTCTCGTGGGTCTCCTGCAGCTAGTAGGAGCAAGTATCTaGAAGGTATATGATCTGAGGGAAACACCGTGCTGGCAAATTTCA +
Preference number: 5 (lower is better)
Translates to: GLLLVGLLQLVGASI*KVYDLRETPCWQIS
Trigger: TGAAATTTGCCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGATACTTGCTCCTACTAGCTGCAGGAGACCCACGAGAAGAAGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS-3UTR CAA 90 bp TTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGGTGGGTGCTGGACAGTTaGAGCAGAACAGGAGGAAGG +
Preference number: 5 (lower is better)
Translates to: FSTTKIRRCQYRRQTEWGWVLDS*SRTGGR
Trigger: CCTTCCTCCTGTTCTGCTCAAACTGTCCAGCACCCA...CCCCCATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAACTGGAAGCTGTATTTaGGGGCGGCTTTTTATACGT +
Preference number: 5 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRTGSCI*GRLFIR
Trigger: ACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAGT...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAAAGGAGAAGCTGACTTaGATGATTCAGCCGGGTACT +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRKEKLT*MIQPGT
Trigger: AGTACCCGGCTGAATCATCAAAGTCAGCTTCTCCTT...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGATCAGGTGTCCACGGGTaGTCACCAATAACTCGTTTA +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRSGVHG*SPITRL
Trigger: TAAACGAGTTATTGGTGACAACCCGTGGACACCTGA...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATCACTTTTGGTATCTGTaGGCACTGCATGCGGGTGAT +
Preference number: 5 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHHFWYL*ALHAGD
Trigger: ATCACCCGCATGCAGTGCCAACAGATACCAAAAGTG...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS TCA 90 bp CCAGGTGGAGAACAGCTTCAAGTTCAGGCACCTGCTCAGCTTCTATaGACTTCACTATACCCAATTTGCACTGTTCCAACTGTTCAGGTG +
Preference number: 5 (lower is better)
Translates to: PGGEQLQVQAPAQLL*TSLYPICTVPTVQV
Trigger: CACCTGAACAGTTGGAACAGTGCAAATTGGGTATAGTGAAGTTCATAGAAGCTGAGCAGGTGCCTGAACTTGAAGCTGTTCTCCACCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 90 bp TTATTTCTACCAGGAAGACATCGTAATACGCGCTGTGCTTCACCATaGACTTCTTCTCGTGGGTCTCCTGCAGCTAGTAGGAGCAAGTAT +
Preference number: 5 (lower is better)
Translates to: LFLPGRHRNTRCASP*TSSRGSPAASRSKY
Trigger: ATACTTGCTCCTACTAGCTGCAGGAGACCCACGAGAAGAAGTCCATGGTGAAGCACAGCGCGTATTACGATGTCTTCCTGGTAGAAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS-3UTR CAA 90 bp ATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAAAGGAGAAGCTGACTTaGATGATTCAGCCGGGTACT +
Preference number: 5 (lower is better)
Translates to: IRRCQYRRQTEWGPEDEGKEKLT*MIQPGT
Trigger: AGTACCCGGCTGAATCATCAAAGTCAGCTTCTCCTT...TCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCTACGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATAAGGAGAAGCTGACTTaGATGATTCAGCCGGGTACT +
Preference number: 5 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHKEKLT*MIQPGT
Trigger: AGTACCCGGCTGAATCATCAAAGTCAGCTTCTCCTT...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATAACCTCCCCCACTGTTaGAAGAAGAACCCTGTGATG +
Preference number: 5 (lower is better)
Translates to: TKIRRCQYRRQTEWGPEDNLPHC*KKNPVM
Trigger: CATCACAGGGTTCTTCTTCAAACAGTGGGGGAGGTT...ATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp TGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAACGTCTCAGGTGTCCACGGGTaGTCACCAATAACTCGTTTA +
Preference number: 5 (lower is better)
Translates to: CQYRRQTEWGPEDEGENVSGVHG*SPITRL
Trigger: TAAACGAGTTATTGGTGACAACCCGTGGACACCTGA...GACGTTTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGATCAATTAAGCTCTGCTaGCTTTTCAACTCCAGGTCT +
Preference number: 5 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRSIKLC*LFNSRS
Trigger: AGACCTGGAGTTGAAAAGCAAGCAGAGCTTAATTGA...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp CGTAGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAGAACTGCTCCCTCTTTaGTTTTCAGTGGTATATCCC +
Preference number: 5 (lower is better)
Translates to: RRCQYRRQTEWGPEDEGEELLPL*FSVVYP
Trigger: GGGATATACCACTGAAAACAAAAGAGGGAGCAGTTC...TTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCTACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp CATCAAGAAACCTGGCGTGGCAGTGGATGGGCATTCCCCCTTTATAAGCACAGAGGCTATGATTGTCTTTaGTGGCCTTTATCAGCTGTT +
Preference number: 5 (lower is better)
Translates to: HQETWRGSGWAFPLYKHRGYDCL*WPLSAV
Trigger: AACAGCTGATAAAGGCCACAAAAGACAATCATAGCC...TCTGTGCTTATAAAGGGGGAATGCCCATCCACTGCCACGCCAGGTTTCTTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTCCGAATGATCTCCTCTaGCTCAGGCAAGAGGTCAGC +
Preference number: 5 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIPNDLL*LRQEVS
Trigger: GCTGACCTCTTGCCTGAGCAAGAGGAGATCATTCGG...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCAGCTGCTCCTTaGGCAGGGTCACACATTTTC +
Preference number: 5 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSWPAAP*AGSHIF
Trigger: GAAAATGTGTGACCCTGCCAAAGGAGCAGCTGGCCA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGACATTACATCCTTTTCTaGTTCTGTAGCCCGGAGACT +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRHYILF*FCSPET
Trigger: AGTCTCCGGGCTACAGAACAAGAAAAGGATGTAATG...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGACCTGAAGAATTTCATTaGTGGTGGGTTGATTGGGCA +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRPEEFH*WWVDWA
Trigger: TGCCCAATCAACCCACCACAAATGAAATTCTTCAGG...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 90 bp CGTGAAGTCCGAACTAAATGGCCCATGGCAAATGCACAGGATTTCTaGATTACACTGTTCCGATCTGTCAGACCACTAAGCAAAGCACTC +
Preference number: 5 (lower is better)
Translates to: REVRTKWPMANAQDF*ITLFRSVRPLSKAL
Trigger: GAGTGCTTTGCTTAGTGGTCTGACAGATCGGAACAGTGTAATTCAGAAATCCTGTGCATTTGCCATGGGCCATTTAGTTCGGACTTCACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 90 bp CTAGAAGCAATCACCAGGTGGAGAACAGCTTCAAGTTCAGGCACCTaGTCAGCTTCTATGAACTTCACTATACCCAATTTGCACTGTTCC +
Preference number: 5 (lower is better)
Translates to: LEAITRWRTASSSGT*SASMNFTIPNLHCS
Trigger: GGAACAGTGCAAATTGGGTATAGTGAAGTTCATAGAAGCTGAGCAGGTGCCTGAACTTGAAGCTGTTCTCCACCTGGTGATTGCTTCTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS GCA 90 bp GTAGGAGCAAGTATCTGGAAGGTATATGATCTGAGGGAAACACCGTaGTGGCAAATTTCACTGCAACTTGCCGAACTTGAACTTCAGGCT +
Preference number: 5 (lower is better)
Translates to: VGASIWKVYDLRETP*WQISLQLAELELQA
Trigger: AGCCTGAAGTTCAAGTTCGGCAAGTTGCAGTGAAATTTGCCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGATACTTGCTCCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 90 bp ACTCCTTCAAGACAGCCTGAAGAATTTCATTTGTGGTGGGTTGATTaGGCACAGACTTTTCCAACTCTGTACTGCAAGCCGTCACTACAC +
Preference number: 5 (lower is better)
Translates to: TPSRQPEEFHLWWVD*AQTFPTLYCKPSLH
Trigger: GTGTAGTGACGGCTTGCAGTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 90 bp CTTTGCAACACTCCTTCAAGACAGCCTGAAGAATTTCATTTGTGGTaGGTTGATTGGGCACAGACTTTTCCAACTCTGTACTGCAAGCCG +
Preference number: 5 (lower is better)
Translates to: LCNTPSRQPEEFHLW*VDWAQTFPTLYCKP
Trigger: CGGCTTGCAGTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGTGTTGCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGAGGGGCCAGCTCACATaGTTTTTCCACTGGCAGGCG +
Preference number: 5 (lower is better)
Translates to: IGIILKEEAEEEEKEKEERGQLT*FFHWQA
Trigger: CGCCTGCCAGTGGAAAAACAATGTGAGCTGGCCCCT...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAAGCCGGAGCATGATCTaGCATATCAGCCAAACTCTG +
Preference number: 5 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLSRSMI*HISQTL
Trigger: CAGAGTTTGGCTGATATGCAAGATCATGCTCCGGCT...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGAATTTTCACACAAACCTaGCTCAGAGTTTTCAGAGCC +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRIFTQT*LRVFRA
Trigger: GGCTCTGAAAACTCTGAGCAAGGTTTGTGTGAAAAT...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 90 bp ATGTTAGCTGGGAACGTTTCAGCAGCTTGTCTAGAGCGCAGGAGATaGGGAACAATCTTTAACTTCACTCTAGTACTGACTGGGTCTCTT +
Preference number: 5 (lower is better)
Translates to: MLAGNVSAACLERRR*GTIFNFTLVLTGSL
Trigger: AAGAGACCCAGTCAGTACTAGAGTGAAGTTAAAGATTGTTCCTCATCTCCTGCGCTCTAGACAAGCTGCTGAAACGTTCCCAGCTAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 90 bp GGAGCAAGTATCTGGAAGGTATATGATCTGAGGGAAACACCGTGCTaGCAAATTTCACTGCAACTTGCCGAACTTGAACTTCAGGCTTTA +
Preference number: 5 (lower is better)
Translates to: GASIWKVYDLRETPC*QISLQLAELELQAL
Trigger: TAAAGCCTGAAGTTCAAGTTCGGCAAGTTGCAGTGAAATTTGCCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGATACTTGCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS-3UTR CAA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGTGGGTGCTGGACAGTTaGAGCAGAACAGGAGGAAGG +
Preference number: 5 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEWVLDS*SRTGGR
Trigger: CCTTCCTCCTGTTCTGCTCAAACTGTCCAGCACCCA...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGATGTAGACACCAATTCTaGTTGATCTTGTTCATTGCC +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRCRHQF*LILFIA
Trigger: GGCAATGAACAAGATCAACAAGAATTGGTGTCTACA...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATTCCTGGGCCATGCTTaGCCCAGGCTCTCAAAGGCG +
Preference number: 5 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPFLGHA*PRLSKA
Trigger: CGCCTTTGAGAGCCTGGGCAAAGCATGGCCCAGGAA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 90 bp GGTCCTGGTACTGAACCAATAGTGTTTCTACTGGAAGCTGTATTTTaGGGCGGCTTTTTATACGTTTATTCAGATGGACCAGCAGTTCCA +
Preference number: 5 (lower is better)
Translates to: GPGTEPIVFLLEAVF*GGFLYVYSDGPAVP
Trigger: TGGAACTGCTGGTCCATCTGAATAAACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAGTAGAAACACTATTGGTTCAGTACCAGGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000134848.2
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 90 bp TCTCTTTGCAACACTCCTTCAAGACAGCCTGAAGAATTTCATTTGTaGTGGGTTGATTGGGCACAGACTTTTCCAACTCTGTACTGCAAG +
Preference number: 5 (lower is better)
Translates to: SLCNTPSRQPEEFHL*WVDWAQTFPTLYCK
Trigger: CTTGCAGTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGTGTTGCAAAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp AATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGAATGGGTTTCCGTACTCCTTCTaGGGTGCTGGACAGTTTGAG +
Preference number: 5 (lower is better)
Translates to: NFPLPRYVGVNTEDRLNGFPYSF*GAGQFE
Trigger: CTCAAACTGTCCAGCACCCAAGAAGGAGTACGGAAA...CCCATTCAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTAGGGGCCAGCTCACATaGTTTTTCCACTGGCAGGCG +
Preference number: 5 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTRGQLT*FFHWQA
Trigger: CGCCTGCCAGTGGAAAAACAATGTGAGCTGGCCCCT...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATTTCACTATACCCAATTaGCACTGTTCCAACTGTTCA +
Preference number: 5 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHFTIPN*HCSNCS
Trigger: TGAACAGTTGGAACAGTGCAAATTGGGTATAGTGAA...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp AGGTGTCAATACAGAAGACAGACTGAATGGGGGCCAGAAGATGAGGGAGAAAACTCCCCAAGGTACACCTaGTACATCTTATTAATGATG +
Preference number: 5 (lower is better)
Translates to: RCQYRRQTEWGPEDEGENSPRYT*YILLMM
Trigger: CATCATTAATAAGATGTACAAGGTGTACCTTGGGGA...GTTTTCTCCCTCATCTTCTGGCCCCCATTCAGTCTGTCTTCTGTATTGACACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGGAACTGCTCCCTCTTTaGTTTTCAGTGGTATATCCC +
Preference number: 5 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVELLPL*FSVVYP
Trigger: GGGATATACCACTGAAAACAAAAGAGGGAGCAGTTC...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAGAACTGCTCCCTCTTTaGTTTTCAGTGGTATATCCC +
Preference number: 5 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLELLPL*FSVVYP
Trigger: GGGATATACCACTGAAAACAAAAGAGGGAGCAGTTC...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGGAACGTTTCAGCAGCTaGTCTAGAGCGCAGGAGATG +
Preference number: 5 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEERFSS*SRAQEM
Trigger: CATCTCCTGCGCTCTAGACAAGCTGCTGAAACGTTC...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTACCGAATGATCTCCTCTaGCTCAGGCAAGAGGTCAGC +
Preference number: 5 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLPNDLL*LRQEVS
Trigger: GCTGACCTCTTGCCTGAGCAAGAGGAGATCATTCGG...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTTGCCTGACATGTGGGTaGGGGCTGATGATATGTTTA +
Preference number: 5 (lower is better)
Translates to: TTYMHEKCRACDFKNPVICLTCG*GLMICL
Trigger: TAAACATATCATCAGCCCCAACCCACATGTCAGGCA...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTGGCCTCAGACACATTTCTGGAAGTTaGTCAATGACGTCATCTAAA +
Preference number: 5 (lower is better)
Translates to: IQDRILNFGSVALAPGLRHISGS*SMTSSK
Trigger: TTTAGATGACGTCATTGACAAACTTCCAGAAATGTG...TCTGAGGCCAGGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS GCA 90 bp CATTCCAGACTTTCAAGTGTTTTCTTCAATACTGAGGCTTTCTCCTaGAGCTCTGGTCTGTTGTCTGTCTCCATAGTAGCTAAAGACTCA +
Preference number: 5 (lower is better)
Translates to: HSRLSSVFFNTEAFS*SSGLLSVSIVAKDS
Trigger: TGAGTCTTTAGCTACTATGGAGACAGACAACAGACCAGAGCTGCAGGAGAAAGCCTCAGTATTGAAGAAAACACTTGAAAGTCTGGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTTGGGTGCTGGACAGTTaGAGCAGAACAGGAGGAAGG +
Preference number: 5 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTWVLDS*SRTGGR
Trigger: CCTTCCTCCTGTTCTGCTCAAACTGTCCAGCACCCA...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGAACCTCCCCCACTGTTaGAAGAAGAACCCTGTGATG +
Preference number: 5 (lower is better)
Translates to: IGIILKEEAEEEEKEKEENLPHC*KKNPVM
Trigger: CATCACAGGGTTCTTCTTCAAACAGTGGGGGAGGTT...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGTCAATTAAGCTCTGCTaGCTTTTCAACTCCAGGTCT +
Preference number: 5 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVSIKLC*LFNSRS
Trigger: AGACCTGGAGTTGAAAAGCAAGCAGAGCTTAATTGA...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TCTGACCTAAACTGCTCTGGGCCTCAAATGAGCACAATACCATCAGTCCCTCATCCTAGTGGTTTAATCTaGATTTCTGGGCAAGTTAAA +
Preference number: 5 (lower is better)
Translates to: SDLNCSGPQMSTIPSVPHPSGLI*ISGQVK
Trigger: TTTAACTTGCCCAGAAATCAAGATTAAACCACTAGG...ATGAGGGACTGATGGTATTGTGCTCATTTGAGGCCCAGAGCAGTTTAGGTCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGGGCTATGATTGTCTTTaGTGGCCTTTATCAGCTGTT +
Preference number: 5 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVGYDCL*WPLSAV
Trigger: AACAGCTGATAAAGGCCACAAAAGACAATCATAGCC...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTAATGCTTGTCATAGCTaGTCGAATTCCAAGGTTGGG +
Preference number: 5 (lower is better)
Translates to: TTYMHEKCRACDFKNPVINACHS*SNSKVG
Trigger: CCCAACCTTGGAATTCGACAAGCTATGACAAGCATT...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCAGGACTCATCATTCCTTaGTCCAGAAGGCAGGGCAGG +
Preference number: 5 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPGLIIP*SRRQGR
Trigger: CCTGCCCTGCCTTCTGGACAAAGGAATGATGAGTCC...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTATTGCAGGCACATGTaGATTGTCTCCATCATGGGA +
Preference number: 5 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSYCRHM*IVSIMG
Trigger: TCCCATGATGGAGACAATCAACATGTGCCTGCAATA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTTTTCATCTTCAGCTTaGGTGGTACGGACTCCCATA +
Preference number: 5 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSFSSSA*VVRTPI
Trigger: TATGGGAGTCCGTACCACCAAAGCTGAAGATGAAAA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS GCA 90 bp ACCAAAAGCAGCACCCTTCCTGGAGTTCCACATTGCATGATGATTTaGCAGATTCATAAATTTATATACCAGATCTGGCTGACTGAGATC +
Preference number: 5 (lower is better)
Translates to: TKSSTLPGVPHCMMI*QIHKFIYQIWLTEI
Trigger: GATCTCAGTCAGCCAGATCTGGTATATAAATTTATGAATCTGGCAAATCATCATGCAATGTGGAACTCCAGGAAGGGTGCTGCTTTTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 90 bp TGCAGGTACAATCGAATACCTCCAAAGGAGCCAGGTACATTTTCCTaGCACACTTCAGTCCACATATTACACTCTTCTTTTTCAGATTTC +
Preference number: 5 (lower is better)
Translates to: CRYNRIPPKEPGTFS*HTSVHILHSSFSDF
Trigger: GAAATCTGAAAAAGAAGAGTGTAATATGTGGACTGAAGTGTGGCAGGAAAATGTACCTGGCTCCTTTGGAGGTATTCGATTGTACCTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 90 bp CATGCGCAAGTACAGAACTATCTCTCCAAATGCTGCTGGATTAAATaGAAGGACTGTGGTTCCGGTCATATATTTGACTGGAGTTTTCAT +
Preference number: 5 (lower is better)
Translates to: HAQVQNYLSKCCWIK*KDCGSGHIFDWSFH
Trigger: ATGAAAACTCCAGTCAAATATATGACCGGAACCACAGTCCTTCCATTTAATCCAGCAGCATTTGGAGAGATAGTTCTGTACTTGCGCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS-3UTR CAA 90 bp TACCCACCCAGTACCGACCCATCCACACTGTTTAATAATTTTCCACTACCAAGATTCACTATACCCAATTaGCACTGTTCCAACTGTTCA +
Preference number: 5 (lower is better)
Translates to: YPPSTDPSTLFNNFPLPRFTIPN*HCSNCS
Trigger: TGAACAGTTGGAACAGTGCAAATTGGGTATAGTGAA...TCTTGGTAGTGGAAAATTATTAAACAGTGTGGATGGGTCGGTACTGGGTGGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGTCCCCAAGGTACACCTaGTACATCTTATTAATGATG +
Preference number: 5 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVSPRYT*YILLMM
Trigger: CATCATTAATAAGATGTACAAGGTGTACCTTGGGGA...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTATCCCCAAGGTACACCTaGTACATCTTATTAATGATG +
Preference number: 5 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLSPRYT*YILLMM
Trigger: CATCATTAATAAGATGTACAAGGTGTACCTTGGGGA...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTGAACGTTTCAGCAGCTaGTCTAGAGCGCAGGAGATG +
Preference number: 5 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTERFSS*SRAQEM
Trigger: CATCTCCTGCGCTCTAGACAAGCTGCTGAAACGTTC...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGAGCCGGAGCATGATCTaGCATATCAGCCAAACTCTG +
Preference number: 5 (lower is better)
Translates to: TNTDRLALILLQSIFIFQSRSMI*HISQTL
Trigger: CAGAGTTTGGCTGATATGCAAGATCATGCTCCGGCT...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGAAAATAGCCCAGTGTTaGGATTGCTCGTTCTTTCAT +
Preference number: 5 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVKIAQC*DCSFFH
Trigger: ATGAAAGAACGAGCAATCCAAACACTGGGCTATTTT...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TGTATCAACACGGAAGTGGATCTGCCTTGGTACCCTCTGGCATTTTTCTGTTTAAAAATAGCCCAGTGTTaGGATTGCTCGTTCTTTCAT +
Preference number: 5 (lower is better)
Translates to: CINTEVDLPWYPLAFFCLKIAQC*DCSFFH
Trigger: ATGAAAGAACGAGCAATCCAAACACTGGGCTATTTT...TAAACAGAAAAATGCCAGAGGGTACCAAGGCAGATCCACTTCCGTGTTGATACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp TTGACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGCAATTCTTGTTGATCTaGTTCATTGCCCAGCTCATA +
Preference number: 5 (lower is better)
Translates to: LTTYMHEKCRACDFKNPVQFLLI*FIAQLI
Trigger: TATGAGCTGGGCAATGAACAAGATCAACAAGAATTG...CACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATATGGCTCCTGCACTTTaGCTGATCTTCACAAGAGTG +
Preference number: 5 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHMAPAL*LIFTRV
Trigger: CACTCTTGTGAAGATCAGCAAAAGTGCAGGAGCCAT...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGTGCAGCTCTGGTCTGTaGTCTGTCTCCATAGTAGCT +
Preference number: 5 (lower is better)
Translates to: TNTDRLALILLQSIFIFQCSSGL*SVSIVA
Trigger: AGCTACTATGGAGACAGACAACAGACCAGAGCTGCA...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS GCA 90 bp ACACATTTTCACACAAACCTTGCTCAGAGTTTTCAGAGCCAGTTCTaGTGCCTTCCGTACAGACTCCTTAATATCATCTTGTACTCTAAA +
Preference number: 5 (lower is better)
Translates to: THFHTNLAQSFQSQF*CLPYRLLNIILYSK
Trigger: TTTAGAGTACAAGATGATATTAAGGAGTCTGTACGGAAGGCAGCAGAACTGGCTCTGAAAACTCTGAGCAAGGTTTGTGTGAAAATGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 90 bp CAAGATTGTGATTGTAAAGCCTTCTGGGTAATAGTAATCAATTCCTaGAGGTACAATCGAATACCTCCAAAGGAGCCAGGTACATTTTCC +
Preference number: 5 (lower is better)
Translates to: QDCDCKAFWVIVINS*RYNRIPPKEPGTFS
Trigger: GGAAAATGTACCTGGCTCCTTTGGAGGTATTCGATTGTACCTGCAGGAATTGATTACTATTACCCAGAAGGCTTTACAATCACAATCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCTTTCCGTACTCCTTCTaGGGTGCTGGACAGTTTGAG +
Preference number: 5 (lower is better)
Translates to: ITNTDRLALILLQSIFIFFPYSF*GAGQFE
Trigger: CTCAAACTGTCCAGCACCCAAGAAGGAGTACGGAAA...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCAACCTCCCCCACTGTTaGAAGAAGAACCCTGTGATG +
Preference number: 5 (lower is better)
Translates to: ITNTDRLALILLQSIFIFNLPHC*KKNPVM
Trigger: CATCACAGGGTTCTTCTTCAAACAGTGGGGGAGGTT...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTATCAGGTGTCCACGGGTaGTCACCAATAACTCGTTTA +
Preference number: 5 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLSGVHG*SPITRL
Trigger: TAAACGAGTTATTGGTGACAACCCGTGGACACCTGA...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTTTCACTATACCCAATTaGCACTGTTCCAACTGTTCA +
Preference number: 5 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIFTIPN*HCSNCS
Trigger: TGAACAGTTGGAACAGTGCAAATTGGGTATAGTGAA...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTGTTCCGGTCATATATTaGACTGGAGTTTTCATTCGA +
Preference number: 5 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIVPVIY*TGVFIR
Trigger: TCGAATGAAAACTCCAGTCAAATATATGACCGGAAC...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTACTGTACAGGCAGCAATaGCTAACAGAGGTGATGTAC +
Preference number: 5 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLLYRQQ*LTEVMY
Trigger: GTACATCACCTCTGTTAGCAATTGCTGCCTGTACAG...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTCGAAACATCAAGATATaGCAGGCACATGTTGATTGT +
Preference number: 5 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIRNIKI*QAHVDC
Trigger: ACAATCAACATGTGCCTGCAATATCTTGATGTTTCG...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCTTCCAATTGCATGAATaGTCAAAGCACAAGACGTCT +
Preference number: 5 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSFQLHE*SKHKTS
Trigger: AGACGTCTTGTGCTTTGACAATTCATGCAATTGGAA...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 90 bp TGGCTGAGTTCATCATTTTCTGACAGAACTGAAACAAATGCGCTCTaGATTTCTTTAAGATGGGACTTCACTTCTCTGTGGGTACTTAGT +
Preference number: 5 (lower is better)
Translates to: WLSSSFSDRTETNAL*ISLRWDFTSLWVLS
Trigger: ACTAAGTACCCACAGAGAAGTGAAGTCCCATCTTAAAGAAATTCAGAGCGCATTTGTTTCAGTTCTGTCAGAAAATGATGAACTCAGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS-3UTR CAA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCCCTAGTGGTTTAATCTaGATTTCTGGGCAAGTTAAA +
Preference number: 5 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSPSGLI*ISGQVK
Trigger: TTTAACTTGCCCAGAAATCAAGATTAAACCACTAGG...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATAAATTTCACTGCAACTaGCCGAACTTGAACTTCAGG +
Preference number: 5 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHKFHCN*PNLNFR
Trigger: CCTGAAGTTCAAGTTCGGCAAGTTGCAGTGAAATTT...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGAAATTTCACTGCAACTaGCCGAACTTGAACTTCAGG +
Preference number: 5 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEKFHCN*PNLNFR
Trigger: CCTGAAGTTCAAGTTCGGCAAGTTGCAGTGAAATTT...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCTGTACAGGCAGCAATaGCTAACAGAGGTGATGTAC +
Preference number: 5 (lower is better)
Translates to: ITNTDRLALILLQSIFIFLYRQQ*LTEVMY
Trigger: GTACATCACCTCTGTTAGCAATTGCTGCCTGTACAG...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ACCACCTATATGCACGAGAAATGCAGAGCATGTGACTTCAAGAATCCAGTGATTGCTCGTTCTTTCATCTaGTTTGTTTCTTTACTAGAC +
Preference number: 5 (lower is better)
Translates to: TTYMHEKCRACDFKNPVIARSFI*FVSLLD
Trigger: GTCTAGTAAAGAAACAAACAAGATGAAAGAACGAGC...AATCACTGGATTCTTGAAGTCACATGCTCTGCATTTCTCGTGCATATAGGTGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTAAGCCCAGTGTTTGGATaGCTCGTTCTTTCATCTTGT +
Preference number: 5 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLSPVFG*LVLSSC
Trigger: ACAAGATGAAAGAACGAGCAATCCAAACACTGGGCT...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATAGACACCAATTCTTGTaGATCTTGTTCATTGCCCAG +
Preference number: 5 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHRHQFL*ILFIAQ
Trigger: CTGGGCAATGAACAAGATCAACAAGAATTGGTGTCT...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTGAGAAAATATCCAAGACAGGATATTAAACTTTGGGTCTGTGGCCTTGGCTCCGAGGTACAAGAGAGCTaGTTTGTTTTGAAATTGATG +
Preference number: 5 (lower is better)
Translates to: LRKYPRQDIKLWVCGLGSEVQES*FVLKLM
Trigger: CATCAATTTCAAAACAAACAAGCTCTCTTGTACCTC...GGAGCCAAGGCCACAGACCCAAAGTTTAATATCCTGTCTTGGATATTTTCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TTTAATAATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAAGACAGACTGACTGGAAGCTGTATTTaGGGGCGGCTTTTTATACGT +
Preference number: 5 (lower is better)
Translates to: FNNFPLPRYVGVNTEDRLTGSCI*GRLFIR
Trigger: ACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAGT...CAGTCTGTCTTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATTATTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp TTTTTCTTTTTATTTCAGCCACGGAATGATGCATGCTACAGAGTAACCTTTACTACTGGAAGCTGTATTTaGGGGCGGCTTTTTATACGT +
Preference number: 5 (lower is better)
Translates to: FFFLFQPRNDACYRVTFTTGSCI*GRLFIR
Trigger: ACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAGT...AGTAAAGGTTACTCTGTAGCATGCATCATTCCGTGGCTGAAATAAAAAGAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGGTTCCGGTCATATATTaGACTGGAGTTTTCATTCGA +
Preference number: 5 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEVPVIY*TGVFIR
Trigger: TCGAATGAAAACTCCAGTCAAATATATGACCGGAAC...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCAGCCCAGTGTTTGGATaGCTCGTTCTTTCATCTTGT +
Preference number: 5 (lower is better)
Translates to: ITNTDRLALILLQSIFIFSPVFG*LVLSSC
Trigger: ACAAGATGAAAGAACGAGCAATCCAAACACTGGGCT...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCTCCTGGAGTTCCACATaGCATGATGATTTGCCAGAT +
Preference number: 5 (lower is better)
Translates to: ITNTDRLALILLQSIFIFSWSST*HDDLPD
Trigger: ATCTGGCAAATCATCATGCAATGTGGAACTCCAGGA...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATTCATTTGTGGTGGGTaGATTGGGCACAGACTTTTC +
Preference number: 5 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPFICGG*IGHRLF
Trigger: GAAAAGTCTGTGCCCAATCAACCCACCACAAATGAA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGTCAAGTGAGTTCTTCTaGATGAGGGGTATGACAATG +
Preference number: 5 (lower is better)
Translates to: TNTDRLALILLQSIFIFQSSEFF*MRGMTM
Trigger: CATTGTCATACCCCTCATCAAGAAGAACTCACTTGA...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp TCCACACTGTTTAATAATTTTCCACTACCAAGATACGTAGGTGTCAATACAGAATCAATTAAGCTCTGCTaGCTTTTCAACTCCAGGTCT +
Preference number: 5 (lower is better)
Translates to: STLFNNFPLPRYVGVNTESIKLC*LFNSRS
Trigger: AGACCTGGAGTTGAAAAGCAAGCAGAGCTTAATTGA...TTCTGTATTGACACCTACGTATCTTGGTAGTGGAAAATTATTAAACAGTGTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055822.15
CDS-3UTR CAA 90 bp CTTAATTTAGGGTGTCAATCTTCATGGAGCATCCATCTACTGCTTCTTAATCTATCAGCTGTTCTATCATaGACTTTAACTCAATTCCGG +
Preference number: 5 (lower is better)
Translates to: LNLGCQSSWSIHLLLLNLSAVLS*TLTQFR
Trigger: CCGGAATTGAGTTAAAGTCAATGATAGAACAGCTGA...TAGATTAAGAAGCAGTAGATGGATGCTCCATGAAGATTGACACCCTAAATTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp ATTGGCATTATTTTAAAAGAGGAGGCAGAAGAGGAAGAGAAAGAGAAGGAAGAGGCTCGTTCTTTCATCTaGTTTGTTTCTTTACTAGAC +
Preference number: 5 (lower is better)
Translates to: IGIILKEEAEEEEKEKEEARSFI*FVSLLD
Trigger: GTCTAGTAAAGAAACAAACAAGATGAAAGAACGAGC...CTCTTCCTTCTCTTTCTCTTCCTCTTCTGCCTCCTCTTTTAAAATAATGCCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS-3UTR CAA 90 bp TCTCAGTTATCTAAAAGACTTTCCATCTGTCCTTCCAAGTCACACTGTATGCATTCATGTTTGACTCTTTaGCCAGTCATAAGTGTTTCT +
Preference number: 5 (lower is better)
Translates to: SQLSKRLSICPSKSHCMHSCLTL*PVISVS
Trigger: AGAAACACTTATGACTGGCAAAAGAGTCAAACATGA...ATGCATACAGTGTGACTTGGAAGGACAGATGGAAAGTCTTTTAGATAACTGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATAGTAGTTTCAGTTCTTTTAGCAATGATGGTTGCCAGACATATCAAAAACCCATTATCCACCATTGACTaGTCAGTGACCAATGCATTC +
Preference number: 5 (lower is better)
Translates to: IVVSVLLAMMVARHIKNPLSTID*SVTNAF
Trigger: GAATGCATTGGTCACTGACAAGTCAATGGTGGATAA...TGGGTTTTTGATATGTCTGGCAACCATCATTGCTAAAAGAACTGAAACTACTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCTCAGCTGTTCTATCATaGACTTTAACTCAATTCCGG +
Preference number: 5 (lower is better)
Translates to: ITNTDRLALILLQSIFIFSAVLS*TLTQFR
Trigger: CCGGAATTGAGTTAAAGTCAATGATAGAACAGCTGA...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ATCACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCCAGAAACTTCATGTTaGACTCTTTTGCCAGTCATA +
Preference number: 5 (lower is better)
Translates to: ITNTDRLALILLQSIFIFPETSC*TLLPVI
Trigger: TATGACTGGCAAAAGAGTCAAACATGAAGTTTCTGG...GAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGTGAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS-3UTR CAA 90 bp ACAAATACAGACAGACTTGCTCTAATCTTGCTCCAATCTATTTTCATCTTCCAGTATTTGAGATTCTCTTaGCAACACTCCTTCAAGACA +
Preference number: 5 (lower is better)
Translates to: TNTDRLALILLQSIFIFQYLRFS*QHSFKT
Trigger: TGTCTTGAAGGAGTGTTGCAAAGAGAATCTCAAATA...CTGGAAGATGAAAATAGATTGGAGCAAGATTAGAGCAAGTCTGTCTGTATTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 72 bp GCTCCTGCCGATAACAACGTTGGGTGTCTGGGTTCCTaGGCCATGCTTTGCCCAGGCTCTCAAAGGCGCCCA +
Preference number: 6 (lower is better)
Translates to: APADNNVGCLGS*AMLCPGSQRRP
Trigger: TGGGCGCCTTTGAGAGCCTGGGCAAAGCATGGCCCAGGAACCCAGACACCCAACGTTGTTATCGGCAGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 72 bp ACACATCAGTTTGCACAGCTCCTGCCGATAACAACGTaGGGTGTCTGGGTTCCTGGGCCATGCTTTGCCCAG +
Preference number: 6 (lower is better)
Translates to: THQFAQLLPITT*GVWVPGPCFAQ
Trigger: CTGGGCAAAGCATGGCCCAGGAACCCAGACACCCAACGTTGTTATCGGCAGGAGCTGTGCAAACTGATGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 72 bp GCCAAACTCTGGGAAGTGGGTACCACCCCTGCACTATaGGCCAGGCACATGCGCAAGTACAGAACTATCTCT +
Preference number: 6 (lower is better)
Translates to: AKLWEVGTTPAL*ARHMRKYRTIS
Trigger: AGAGATAGTTCTGTACTTGCGCATGTGCCTGGCTCATAGTGCAGGGGTGGTACCCACTTCCCAGAGTTTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS GCA 72 bp TGCTCAGGCAAGAGGTCAGCATCTGTCTCTAGGTCATaGTGCTCGGCCATCCTCACTCTCTTCTTAGCCAAG +
Preference number: 6 (lower is better)
Translates to: CSGKRSASVSRS*CSAILTLFLAK
Trigger: CTTGGCTAAGAAGAGAGTGAGGATGGCCGAGCAGCATGACCTAGAGACAGATGCTGACCTCTTGCCTGAGCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS GCA 72 bp CAGACCCTTCACTGGGGATCGGAAGAGGACCATTTCTaGCGATTTCACCCAAGGCTGTACAGGCAGCAATTG +
Preference number: 6 (lower is better)
Translates to: QTLHWGSEEDHF*RFHPRLYRQQL
Trigger: CAATTGCTGCCTGTACAGCCTTGGGTGAAATCGGCAGAAATGGTCCTCTTCCGATCCCCAGTGAAGGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS CCA 72 bp CTTTTCAACTCCAGGTCTGCGGCTGTCGCGACACTATaGCGTGTGTCACTAGAAGCAATCACCAGGTGGAGA +
Preference number: 6 (lower is better)
Translates to: LFNSRSAAVATL*RVSLEAITRWR
Trigger: TCTCCACCTGGTGATTGCTTCTAGTGACACACGCCATAGTGTCGCGACAGCCGCAGACCTGGAGTTGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 72 bp CCAGGAAGACATCGTAATACGCGCTGTGCTTCACCATaGACTTCTTCTCGTGGGTCTCCTGCAGCTAGTAGG +
Preference number: 6 (lower is better)
Translates to: PGRHRNTRCASP*TSSRGSPAASR
Trigger: CCTACTAGCTGCAGGAGACCCACGAGAAGAAGTCCATGGTGAAGCACAGCGCGTATTACGATGTCTTCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 72 bp GAGCATGATCTTGCATATCAGCCAAACTCTGGGAAGTaGGTACCACCCCTGCACTATGAGCCAGGCACATGC +
Preference number: 6 (lower is better)
Translates to: EHDLAYQPNSGK*VPPLHYEPGTC
Trigger: GCATGTGCCTGGCTCATAGTGCAGGGGTGGTACCCACTTCCCAGAGTTTGGCTGATATGCAAGATCATGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS GCA 72 bp TGGAAAAAGGCGTTCATTGACTGGAGGACACCTAGCTaGACTTTCCACGTGCTGAGTCTTAGCCGCTCACAC +
Preference number: 6 (lower is better)
Translates to: WKKAFIDWRTPS*TFHVLSLSRSH
Trigger: GTGTGAGCGGCTAAGACTCAGCACGTGGAAAGTGCAGCTAGGTGTCCTCCAGTCAATGAACGCCTTTTTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 72 bp CTCGTGGGTCTCCTGCAGCTAGTAGGAGCAAGTATCTaGAAGGTATATGATCTGAGGGAAACACCGTGCTGG +
Preference number: 6 (lower is better)
Translates to: LVGLLQLVGASI*KVYDLRETPCW
Trigger: CCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGATACTTGCTCCTACTAGCTGCAGGAGACCCACGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 72 bp GGAGGACAGCAATGGTTCTCTGGCCAGCTGCTCCTTTaGCAGGGTCACACATTTTCACACAAACCTTGCTCA +
Preference number: 6 (lower is better)
Translates to: GGQQWFSGQLLL*QGHTFSHKPCS
Trigger: TGAGCAAGGTTTGTGTGAAAATGTGTGACCCTGCCAAAGGAGCAGCTGGCCAGAGAACCATTGCTGTCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 72 bp AGCCCGTATGTACCGTCCAATAGCCGGAGCATGATCTaGCATATCAGCCAAACTCTGGGAAGTGGGTACCAC +
Preference number: 6 (lower is better)
Translates to: SPYVPSNSRSMI*HISQTLGSGYH
Trigger: GTGGTACCCACTTCCCAGAGTTTGGCTGATATGCAAGATCATGCTCCGGCTATTGGACGGTACATACGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS CAA 72 bp AGGAGGACAGCAATGGTTCTCTGGCCAGCTGCTCCTTaGGCAGGGTCACACATTTTCACACAAACCTTGCTC +
Preference number: 6 (lower is better)
Translates to: RRTAMVLWPAAP*AGSHIFTQTLL
Trigger: GAGCAAGGTTTGTGTGAAAATGTGTGACCCTGCCAAAGGAGCAGCTGGCCAGAGAACCATTGCTGTCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS TCA 72 bp CTGGATACACTGACACAGCTTCCAATAGACAGTACATaGCTGGCAAACCTCCAACCCCCGCTAGCAGCTGTT +
Preference number: 6 (lower is better)
Translates to: LDTLTQLPIDST*LANLQPPLAAV
Trigger: AACAGCTGCTAGCGGGGGTTGGAGGTTTGCCAGTCATGTACTGTCTATTGGAAGCTGTGTCAGTGTATCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS GCA 72 bp AGGTGTCCACGGGTTGTCACCAATAACTCGTTTAGCTaGATAAAAGCTCATTCCTGGGGGAGGCTGTGGGAT +
Preference number: 6 (lower is better)
Translates to: RCPRVVTNNSFS*IKAHSWGRLWD
Trigger: ATCCCACAGCCTCCCCCAGGAATGAGCTTTTATGCAGCTAAACGAGTTATTGGTGACAACCCGTGGACACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000134848.2
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS GCA 72 bp TCAGGCAAGAGGTCAGCATCTGTCTCTAGGTCATGCTaGTCGGCCATCCTCACTCTCTTCTTAGCCAAGTAT +
Preference number: 6 (lower is better)
Translates to: SGKRSASVSRSC*SAILTLFLAKY
Trigger: ATACTTGGCTAAGAAGAGAGTGAGGATGGCCGAGCAGCATGACCTAGAGACAGATGCTGACCTCTTGCCTGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS GCA 72 bp CCAGGCATCTCGGGCAGCCACAGAGTTAGTTCCTATTaGAGCACTGGTAATGGCTTCACCAATAGTGAACTG +
Preference number: 6 (lower is better)
Translates to: PGISGSHRVSSY*STGNGFTNSEL
Trigger: CAGTTCACTATTGGTGAAGCCATTACCAGTGCTGCAATAGGAACTAACTCTGTGGCTGCCCGAGATGCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CCA 72 bp ACACTATGGCGTGTGTCACTAGAAGCAATCACCAGGTaGAGAACAGCTTCAAGTTCAGGCACCTGCTCAGCT +
Preference number: 6 (lower is better)
Translates to: TLWRVSLEAITR*RTASSSGTCSA
Trigger: AGCTGAGCAGGTGCCTGAACTTGAAGCTGTTCTCCACCTGGTGATTGCTTCTAGTGACACACGCCATAGTGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 72 bp GGATCTGCGTGTTCCTCTTCCAGAAGCATTAACCCCTaGAAAAAGGCGTTCATTGACTGGAGGACACCTAGC +
Preference number: 6 (lower is better)
Translates to: GSACSSSRSINP*KKAFIDWRTPS
Trigger: GCTAGGTGTCCTCCAGTCAATGAACGCCTTTTTCCAGGGGTTAATGCTTCTGGAAGAGGAACACGCAGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 72 bp CTTCCAGAAGCATTAACCCCTGGAAAAAGGCGTTCATaGACTGGAGGACACCTAGCTGCACTTTCCACGTGC +
Preference number: 6 (lower is better)
Translates to: LPEALTPGKRRS*TGGHLAALSTC
Trigger: GCACGTGGAAAGTGCAGCTAGGTGTCCTCCAGTCAATGAACGCCTTTTTCCAGGGGTTAATGCTTCTGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 90 bp GGTATGAGTTTGGGTGCGTGTGGTTTCAACATGGCTCCTGCACTTTaGCTGATCTTCACAAGAGTGTTAATGCTGAGGGCTCGGACTTCC +
Preference number: 6 (lower is better)
Translates to: GMSLGACGFNMAPAL*LIFTRVLMLRARTS
Trigger: GGAAGTCCGAGCCCTCAGCATTAACACTCTTGTGAAGATCAGCAAAAGTGCAGGAGCCATGTTGAAACCACACGCACCCAAACTCATACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS TCA 72 bp ATCAAAGCCCGTATGTACCGTCCAATAGCCGGAGCATaGTCTTGCATATCAGCCAAACTCTGGGAAGTGGGT +
Preference number: 6 (lower is better)
Translates to: IKARMYRPIAGA*SCISAKLWEVG
Trigger: ACCCACTTCCCAGAGTTTGGCTGATATGCAAGATCATGCTCCGGCTATTGGACGGTACATACGGGCTTTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS TCA 72 bp GCTCCAACACACTTAAGGACTCTAAGAGTGCTGGTATaGGTTTGGGTGCGTGTGGTTTCAACATGGCTCCTG +
Preference number: 6 (lower is better)
Translates to: APTHLRTLRVLV*VWVRVVSTWLL
Trigger: CAGGAGCCATGTTGAAACCACACGCACCCAAACTCATACCAGCACTCTTAGAGTCCTTAAGTGTGTTGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CCA 72 bp AGAAGCATTAACCCCTGGAAAAAGGCGTTCATTGACTaGAGGACACCTAGCTGCACTTTCCACGTGCTGAGT +
Preference number: 6 (lower is better)
Translates to: RSINPWKKAFID*RTPSCTFHVLS
Trigger: ACTCAGCACGTGGAAAGTGCAGCTAGGTGTCCTCCAGTCAATGAACGCCTTTTTCCAGGGGTTAATGCTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 72 bp GCCCTGACCATCAGGTGTTTTGCCAAGGCCACCCCCTaGAAATACCACTGTCTCTCCAGAAACTTCATGTTT +
Preference number: 6 (lower is better)
Translates to: ALTIRCFAKATP*KYHCLSRNFMF
Trigger: AAACATGAAGTTTCTGGAGAGACAGTGGTATTTCAAGGGGGTGGCCTTGGCAAAACACCTGATGGTCAGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 72 bp GGGGATCCAATGCCCACTTTTGGTATCTGTTGGCACTaGATGCGGGTGATAACACAGACACAGAAAGTAAGT +
Preference number: 6 (lower is better)
Translates to: GDPMPTFGICWH*MRVITQTQKVS
Trigger: ACTTACTTTCTGTGTCTGTGTTATCACCCGCATGCAGTGCCAACAGATACCAAAAGTGGGCATTGGATCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS CCA 72 bp CCAACTCTGTACTGCAAGCCGTCACTACACAGGCAATaGCTTTCAATAGTTCTTCCTTTCCTGCCCATGTTC +
Preference number: 6 (lower is better)
Translates to: PTLYCKPSLHRQ*LSIVLPFLPMF
Trigger: GAACATGGGCAGGAAAGGAAGAACTATTGAAAGCCATTGCCTGTGTAGTGACGGCTTGCAGTACAGAGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 72 bp GTTTCAGGGGATCCAATGCCCACTTTTGGTATCTGTTaGCACTGCATGCGGGTGATAACACAGACACAGAAA +
Preference number: 6 (lower is better)
Translates to: VSGDPMPTFGIC*HCMRVITQTQK
Trigger: TTTCTGTGTCTGTGTTATCACCCGCATGCAGTGCCAACAGATACCAAAAGTGGGCATTGGATCCCCTGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107557.9
CDS CAA 72 bp GGGGAGGCTGTGGGATTCCAGAACCTCCCCCACTGTTaGAAGAAGAACCCTGTGATGATGATGATGAATTTT +
Preference number: 6 (lower is better)
Translates to: GEAVGFQNLPHC*KKNPVMMMMNF
Trigger: AAAATTCATCATCATCATCACAGGGTTCTTCTTCAAACAGTGGGGGAGGTTCTGGAATCCCACAGCCTCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000134848.2
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CAA 90 bp GCAACACTCCTTCAAGACAGCCTGAAGAATTTCATTTGTGGTGGGTaGATTGGGCACAGACTTTTCCAACTCTGTACTGCAAGCCGTCAC +
Preference number: 6 (lower is better)
Translates to: ATLLQDSLKNFICGG*IGHRLFQLCTASRH
Trigger: GTGACGGCTTGCAGTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 72 bp GGTATTAAAAGATGCATTAAGCTATCCTGCTGTGGCTaGGGTTTCCCTTCCATGGCAGTAAGAAGCGTAGGG +
Preference number: 6 (lower is better)
Translates to: GIKRCIKLSCCG*GFPSMAVRSVG
Trigger: CCCTACGCTTCTTACTGCCATGGAAGGGAAACCTCAGCCACAGCAGGATAGCTTAATGCATCTTTTAATACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000134848.2
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS TCA 72 bp CCTGCAGCTAGTAGGAGCAAGTATCTGGAAGGTATATaGTCTGAGGGAAACACCGTGCTGGCAAATTTCACT +
Preference number: 6 (lower is better)
Translates to: PAASRSKYLEGI*SEGNTVLANFT
Trigger: AGTGAAATTTGCCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGATACTTGCTCCTACTAGCTGCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS TCA 72 bp ATTGCAGCACTGGTAATGGCTTCACCAATAGTGAACTaGAGCTCAATCTGCTTGGCCTCCACAGAATCCATC +
Preference number: 6 (lower is better)
Translates to: IAALVMASPIVN*SSICLASTESI
Trigger: GATGGATTCTGTGGAGGCCAAGCAGATTGAGCTTCAGTTCACTATTGGTGAAGCCATTACCAGTGCTGCAAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 72 bp TCCGGTTCTTCCTTACAGAGGGCTTCAAAGAGCTGCTaGACAAGAGCTATATCCTTAGTGAATAAATGGGGC +
Preference number: 6 (lower is better)
Translates to: SGSSLQRASKSC*TRAISLVNKWG
Trigger: GCCCCATTTATTCACTAAGGATATAGCTCTTGTGCAGCAGCTCTTTGAAGCCCTCTGTAAGGAAGAACCGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 72 bp TGCTGCTATCCCGTGAAGTCCGAACTAAATGGCCCATaGCAAATGCACAGGATTTCTGAATTACACTGTTCC +
Preference number: 6 (lower is better)
Translates to: CCYPVKSELNGP*QMHRISELHCS
Trigger: GGAACAGTGTAATTCAGAAATCCTGTGCATTTGCCATGGGCCATTTAGTTCGGACTTCACGGGATAGCAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CCA 72 bp AGACAGCCTGAAGAATTTCATTTGTGGTGGGTTGATTaGGCACAGACTTTTCCAACTCTGTACTGCAAGCCG +
Preference number: 6 (lower is better)
Translates to: RQPEEFHLWWVD*AQTFPTLYCKP
Trigger: CGGCTTGCAGTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 72 bp AACACACTTAAGGACTCTAAGAGTGCTGGTATGAGTTaGGGTGCGTGTGGTTTCAACATGGCTCCTGCACTT +
Preference number: 6 (lower is better)
Translates to: NTLKDSKSAGMS*GACGFNMAPAL
Trigger: AAGTGCAGGAGCCATGTTGAAACCACACGCACCCAAACTCATACCAGCACTCTTAGAGTCCTTAAGTGTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 90 bp AGATATTGCAGGCACATGTTGATTGTCTCCATCATGGGAGAGGATTaGGCAGCACTGAGTCGAGCACTGTCCATTACATCCTTTTCTTGT +
Preference number: 6 (lower is better)
Translates to: RYCRHMLIVSIMGED*AALSRALSITSFSC
Trigger: ACAAGAAAAGGATGTAATGGACAGTGCTCGACTCAGTGCTGCCAAATCCTCTCCCATGATGGAGACAATCAACATGTGCCTGCAATATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 90 bp GACTCCAGCTGCAGCTCTCTTTCCTTCTCATTTTCATCTTCAGCTTaGGTGGTACGGACTCCCATACTTTCAAGTGAGTTCTTCTTGATG +
Preference number: 6 (lower is better)
Translates to: DSSCSSLSFSFSSSA*VVRTPILSSEFFLM
Trigger: CATCAAGAAGAACTCACTTGAAAGTATGGGAGTCCGTACCACCAAAGCTGAAGATGAAAATGAGAAGGAAAGAGAGCTGCAGCTGGAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 72 bp GGGAACGTTTCAGCAGCTTGTCTAGAGCGCAGGAGATaGGGAACAATCTTTAACTTCACTCTAGTACTGACT +
Preference number: 6 (lower is better)
Translates to: GNVSAACLERRR*GTIFNFTLVLT
Trigger: AGTCAGTACTAGAGTGAAGTTAAAGATTGTTCCTCATCTCCTGCGCTCTAGACAAGCTGCTGAAACGTTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS TCA 72 bp CGAACTAAATGGCCCATGGCAAATGCACAGGATTTCTaGATTACACTGTTCCGATCTGTCAGACCACTAAGC +
Preference number: 6 (lower is better)
Translates to: RTKWPMANAQDF*ITLFRSVRPLS
Trigger: GCTTAGTGGTCTGACAGATCGGAACAGTGTAATTCAGAAATCCTGTGCATTTGCCATGGGCCATTTAGTTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 72 bp ATCACCAGGTGGAGAACAGCTTCAAGTTCAGGCACCTaGTCAGCTTCTATGAACTTCACTATACCCAATTTG +
Preference number: 6 (lower is better)
Translates to: ITRWRTASSSGT*SASMNFTIPNL
Trigger: CAAATTGGGTATAGTGAAGTTCATAGAAGCTGAGCAGGTGCCTGAACTTGAAGCTGTTCTCCACCTGGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS GCA 72 bp GTCTCCGGTTCTTCCTTACAGAGGGCTTCAAAGAGCTaGTGCACAAGAGCTATATCCTTAGTGAATAAATGG +
Preference number: 6 (lower is better)
Translates to: VSGSSLQRASKS*CTRAISLVNKW
Trigger: CCATTTATTCACTAAGGATATAGCTCTTGTGCAGCAGCTCTTTGAAGCCCTCTGTAAGGAAGAACCGGAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS GCA 72 bp CACACAAACCTTGCTCAGAGTTTTCAGAGCCAGTTCTaGTGCCTTCCGTACAGACTCCTTAATATCATCTTG +
Preference number: 6 (lower is better)
Translates to: HTNLAQSFQSQF*CLPYRLLNIIL
Trigger: CAAGATGATATTAAGGAGTCTGTACGGAAGGCAGCAGAACTGGCTCTGAAAACTCTGAGCAAGGTTTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS GCA 72 bp GGAACTAGTTCACCTAGCACCGAAACATCAAGATATTaGAGGCACATGTTGATTGTCTCCATCATGGGAGAG +
Preference number: 6 (lower is better)
Translates to: GTSSPSTETSRY*RHMLIVSIMGE
Trigger: CTCTCCCATGATGGAGACAATCAACATGTGCCTGCAATATCTTGATGTTTCGGTGCTAGGTGAACTAGTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CCA 72 bp AGCTGCTGCACAAGAGCTATATCCTTAGTGAATAAATaGGGCATTCGACTGGAGAGTTTCCCAACAGCTGAA +
Preference number: 6 (lower is better)
Translates to: SCCTRAISLVNK*GIRLESFPTAE
Trigger: TTCAGCTGTTGGGAAACTCTCCAGTCGAATGCCCCATTTATTCACTAAGGATATAGCTCTTGTGCAGCAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CAA 72 bp GTGGTACGGACTCCCATACTTTCAAGTGAGTTCTTCTaGATGAGGGGTATGACAATGTCAGAAAACTCCTGG +
Preference number: 6 (lower is better)
Translates to: VVRTPILSSEFF*MRGMTMSENSW
Trigger: CCAGGAGTTTTCTGACATTGTCATACCCCTCATCAAGAAGAACTCACTTGAAAGTATGGGAGTCCGTACCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 90 bp GATTCTCTTTGCAACACTCCTTCAAGACAGCCTGAAGAATTTCATTaGTGGTGGGTTGATTGGGCACAGACTTTTCCAACTCTGTACTGC +
Preference number: 6 (lower is better)
Translates to: DSLCNTPSRQPEEFH*WWVDWAQTFPTLYC
Trigger: GCAGTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGTGTTGCAAAGAGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS TCA 72 bp TTCGTGACAAAGGAAACTGCAGCAGGGTCCTGGTACTaGACCAATAGTGTTTCTACTGGAAGCTGTATTTTG +
Preference number: 6 (lower is better)
Translates to: FVTKETAAGSWY*TNSVSTGSCIL
Trigger: CAAAATACAGCTTCCAGTAGAAACACTATTGGTTCAGTACCAGGACCCTGCTGCAGTTTCCTTTGTCACGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000134848.2
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS TCA 72 bp GAACAGCTTCAAGTTCAGGCACCTGCTCAGCTTCTATaGACTTCACTATACCCAATTTGCACTGTTCCAACT +
Preference number: 6 (lower is better)
Translates to: EQLQVQAPAQLL*TSLYPICTVPT
Trigger: AGTTGGAACAGTGCAAATTGGGTATAGTGAAGTTCATAGAAGCTGAGCAGGTGCCTGAACTTGAAGCTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS TCA 72 bp TTCAGCTTTGGTGGTACGGACTCCCATACTTTCAAGTaGGTTCTTCTTGATGAGGGGTATGACAATGTCAGA +
Preference number: 6 (lower is better)
Translates to: FSFGGTDSHTFK*VLLDEGYDNVR
Trigger: TCTGACATTGTCATACCCCTCATCAAGAAGAACTCACTTGAAAGTATGGGAGTCCGTACCACCAAAGCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS GCA 72 bp AGTATCTGGAAGGTATATGATCTGAGGGAAACACCGTaGTGGCAAATTTCACTGCAACTTGCCGAACTTGAA +
Preference number: 6 (lower is better)
Translates to: SIWKVYDLRETP*WQISLQLAELE
Trigger: TTCAAGTTCGGCAAGTTGCAGTGAAATTTGCCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGATACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 72 bp ATCTGGAAGGTATATGATCTGAGGGAAACACCGTGCTaGCAAATTTCACTGCAACTTGCCGAACTTGAACTT +
Preference number: 6 (lower is better)
Translates to: IWKVYDLRETPC*QISLQLAELEL
Trigger: AAGTTCAAGTTCGGCAAGTTGCAGTGAAATTTGCCAGCACGGTGTTTCCCTCAGATCATATACCTTCCAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CCA 72 bp ACTCCTTCAAGACAGCCTGAAGAATTTCATTTGTGGTaGGTTGATTGGGCACAGACTTTTCCAACTCTGTAC +
Preference number: 6 (lower is better)
Translates to: TPSRQPEEFHLW*VDWAQTFPTLY
Trigger: GTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 72 bp AACACTCCTTCAAGACAGCCTGAAGAATTTCATTTGTaGTGGGTTGATTGGGCACAGACTTTTCCAACTCTG +
Preference number: 6 (lower is better)
Translates to: NTPSRQPEEFHL*WVDWAQTFPTL
Trigger: CAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 72 bp TTCTGCCGATTTCACCCAAGGCTGTACAGGCAGCAATaGCTAACAGAGGTGATGTACTGTCTAAAAATGAAC +
Preference number: 6 (lower is better)
Translates to: FCRFHPRLYRQQ*LTEVMYCLKMN
Trigger: GTTCATTTTTAGACAGTACATCACCTCTGTTAGCAATTGCTGCCTGTACAGCCTTGGGTGAAATCGGCAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS CAA 72 bp GTCAGTGACCAATGCATTCCAAATGCTTGTCATAGCTaGTCGAATTCCAAGGTTGGGATCAAACTGGTATCG +
Preference number: 6 (lower is better)
Translates to: VSDQCIPNACHS*SNSKVGIKLVS
Trigger: CGATACCAGTTTGATCCCAACCTTGGAATTCGACAAGCTATGACAAGCATTTGGAATGCATTGGTCACTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 72 bp CTTCAAGACAGCCTGAAGAATTTCATTTGTGGTGGGTaGATTGGGCACAGACTTTTCCAACTCTGTACTGCA +
Preference number: 6 (lower is better)
Translates to: LQDSLKNFICGG*IGHRLFQLCTA
Trigger: TGCAGTACAGAGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 72 bp TGCAACACTCCTTCAAGACAGCCTGAAGAATTTCATTaGTGGTGGGTTGATTGGGCACAGACTTTTCCAACT +
Preference number: 6 (lower is better)
Translates to: CNTPSRQPEEFH*WWVDWAQTFPT
Trigger: AGTTGGAAAAGTCTGTGCCCAATCAACCCACCACAAATGAAATTCTTCAGGCTGTCTTGAAGGAGTGTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CAA 90 bp GAGGACCATTTCTGCCGATTTCACCCAAGGCTGTACAGGCAGCAATaGCTAACAGAGGTGATGTACTGTCTAAAAATGAACCTATTGTTT +
Preference number: 6 (lower is better)
Translates to: EDHFCRFHPRLYRQQ*LTEVMYCLKMNLLF
Trigger: AAACAATAGGTTCATTTTTAGACAGTACATCACCTCTGTTAGCAATTGCTGCCTGTACAGCCTTGGGTGAAATCGGCAGAAATGGTCCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS GCA 72 bp GATTGTAAAGCCTTCTGGGTAATAGTAATCAATTCCTaGAGGTACAATCGAATACCTCCAAAGGAGCCAGGT +
Preference number: 6 (lower is better)
Translates to: DCKAFWVIVINS*RYNRIPPKEPG
Trigger: ACCTGGCTCCTTTGGAGGTATTCGATTGTACCTGCAGGAATTGATTACTATTACCCAGAAGGCTTTACAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS CCA 72 bp GTACAGAACTATCTCTCCAAATGCTGCTGGATTAAATaGAAGGACTGTGGTTCCGGTCATATATTTGACTGG +
Preference number: 6 (lower is better)
Translates to: VQNYLSKCCWIK*KDCGSGHIFDW
Trigger: CCAGTCAAATATATGACCGGAACCACAGTCCTTCCATTTAATCCAGCAGCATTTGGAGAGATAGTTCTGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS CAA 90 bp TTTGCCAGTCATAAGTGTTTCTACAAGTGTAGACACCAATTCTTGTaGATCTTGTTCATTGCCCAGCTCATAAACCAACCCAAGCCCCTT +
Preference number: 6 (lower is better)
Translates to: FASHKCFYKCRHQFL*ILFIAQLINQPKPL
Trigger: AAGGGGCTTGGGTTGGTTTATGAGCTGGGCAATGAACAAGATCAACAAGAATTGGTGTCTACACTTGTAGAAACACTTATGACTGGCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 90 bp TCTTTTGCCAGTCATAAGTGTTTCTACAAGTGTAGACACCAATTCTaGTTGATCTTGTTCATTGCCCAGCTCATAAACCAACCCAAGCCC +
Preference number: 6 (lower is better)
Translates to: SFASHKCFYKCRHQF*LILFIAQLINQPKP
Trigger: GGGCTTGGGTTGGTTTATGAGCTGGGCAATGAACAAGATCAACAAGAATTGGTGTCTACACTTGTAGAAACACTTATGACTGGCAAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS TCA 72 bp ACCGTGCTGGCAAATTTCACTGCAACTTGCCGAACTTaGACTTCAGGCTTTATTAAGTATGAAGCTACAAGT +
Preference number: 6 (lower is better)
Translates to: TVLANFTATCRT*TSGFIKYEATS
Trigger: ACTTGTAGCTTCATACTTAATAAAGCCTGAAGTTCAAGTTCGGCAAGTTGCAGTGAAATTTGCCAGCACGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS TCA 72 bp TTTGCCAGATTCATAAATTTATATACCAGATCTGGCTaGCTGAGATCACTTGCCAGAGAGCAAAGCTCCTTG +
Preference number: 6 (lower is better)
Translates to: FARFINLYTRSG*LRSLAREQSSL
Trigger: CAAGGAGCTTTGCTCTCTGGCAAGTGATCTCAGTCAGCCAGATCTGGTATATAAATTTATGAATCTGGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CCA 72 bp GGGCAGAACTTCTTTAGCATGGTTCTTCAATACATCTaGGCTGTATCTTCCAATTGCATGAATTGTCAAAGC +
Preference number: 6 (lower is better)
Translates to: GQNFFSMVLQYI*AVSSNCMNCQS
Trigger: GCTTTGACAATTCATGCAATTGGAAGATACAGCCCAGATGTATTGAAGAACCATGCTAAAGAAGTTCTGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 72 bp GGATTAAATGGAAGGACTGTGGTTCCGGTCATATATTaGACTGGAGTTTTCATTCGATGGGAAGCCTTTTCT +
Preference number: 6 (lower is better)
Translates to: GLNGRTVVPVIY*TGVFIRWEAFS
Trigger: AGAAAAGGCTTCCCATCGAATGAAAACTCCAGTCAAATATATGACCGGAACCACAGTCCTTCCATTTAATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS CAA 90 bp CAGAGCCAGTTCTGCTGCCTTCCGTACAGACTCCTTAATATCATCTaGTACTCTAAAAAGTGTTTCCCACATTTCTGGAAGTTTGTCAAT +
Preference number: 6 (lower is better)
Translates to: QSQFCCLPYRLLNII*YSKKCFPHFWKFVN
Trigger: ATTGACAAACTTCCAGAAATGTGGGAAACACTTTTTAGAGTACAAGATGATATTAAGGAGTCTGTACGGAAGGCAGCAGAACTGGCTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CCA 72 bp ACTGAACCAATAGTGTTTCTACTGGAAGCTGTATTTTaGGGCGGCTTTTTATACGTTTATTCAGATGGACCA +
Preference number: 6 (lower is better)
Translates to: TEPIVFLLEAVF*GGFLYVYSDGP
Trigger: TGGTCCATCTGAATAAACGTATAAAAAGCCGCCCCAAAATACAGCTTCCAGTAGAAACACTATTGGTTCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000055822.15
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000134848.2
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS CAA 72 bp CATAAGTGTTTCTACAAGTGTAGACACCAATTCTTGTaGATCTTGTTCATTGCCCAGCTCATAAACCAACCC +
Preference number: 6 (lower is better)
Translates to: HKCFYKCRHQFL*ILFIAQLINQP
Trigger: GGGTTGGTTTATGAGCTGGGCAATGAACAAGATCAACAAGAATTGGTGTCTACACTTGTAGAAACACTTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 72 bp TTCTGCTGCCTTCCGTACAGACTCCTTAATATCATCTaGTACTCTAAAAAGTGTTTCCCACATTTCTGGAAG +
Preference number: 6 (lower is better)
Translates to: FCCLPYRLLNII*YSKKCFPHFWK
Trigger: CTTCCAGAAATGTGGGAAACACTTTTTAGAGTACAAGATGATATTAAGGAGTCTGTACGGAAGGCAGCAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 90 bp GCTCGTTCTTTCATCTTGTTTGTTTCTTTACTAGACGGAATTCTATaGAGTAAGCTTTCTACGAGGTGCAGTTTAGTAAATCCAGACCCT +
Preference number: 6 (lower is better)
Translates to: ARSFILFVSLLDGIL*SKLSTRCSLVNPDP
Trigger: AGGGTCTGGATTTACTAAACTGCACCTCGTAGAAAGCTTACTCAATAGAATTCCGTCTAGTAAAGAAACAAACAAGATGAAAGAACGAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000149301.8
CDS TCA 72 bp TCATCATTTTCTGACAGAACTGAAACAAATGCGCTCTaGATTTCTTTAAGATGGGACTTCACTTCTCTGTGG +
Preference number: 6 (lower is better)
Translates to: SSFSDRTETNAL*ISLRWDFTSLW
Trigger: CCACAGAGAAGTGAAGTCCCATCTTAAAGAAATTCAGAGCGCATTTGTTTCAGTTCTGTCAGAAAATGATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CCA 72 bp GTTTGTTTTGAAATTGATGCCATAGCAATTGCACCCTaGGCTTTCATTTTCCAAGATTGTGATTGTAAAGCC +
Preference number: 6 (lower is better)
Translates to: VCFEIDAIAIAP*AFIFQDCDCKA
Trigger: GGCTTTACAATCACAATCTTGGAAAATGAAAGCCCAGGGTGCAATTGCTATGGCATCAATTTCAAAACAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102889.10
CDS GCA 72 bp AAAACCAAAAGCAGCACCCTTCCTGGAGTTCCACATTaGATGATGATTTGCCAGATTCATAAATTTATATAC +
Preference number: 6 (lower is better)
Translates to: KTKSSTLPGVPH*MMICQIHKFIY
Trigger: GTATATAAATTTATGAATCTGGCAAATCATCATGCAATGTGGAACTCCAGGAAGGGTGCTGCTTTTGGTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 72 bp AGTCATAAGTGTTTCTACAAGTGTAGACACCAATTCTaGTTGATCTTGTTCATTGCCCAGCTCATAAACCAA +
Preference number: 6 (lower is better)
Translates to: SHKCFYKCRHQF*LILFIAQLINQ
Trigger: TTGGTTTATGAGCTGGGCAATGAACAAGATCAACAAGAATTGGTGTCTACACTTGTAGAAACACTTATGACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 72 bp TGTACTCTAAAAAGTGTTTCCCACATTTCTGGAAGTTaGTCAATGACGTCATCTAAAGGTCTTCCTCTCAAT +
Preference number: 6 (lower is better)
Translates to: CTLKSVSHISGS*SMTSSKGLPLN
Trigger: ATTGAGAGGAAGACCTTTAGATGACGTCATTGACAAACTTCCAGAAATGTGGGAAACACTTTTTAGAGTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000102889.10
ENSMUST00000149301.8
CDS CAA 72 bp ATTGCAGGGACAGTGTTCTTAACTTTGAGTTTGTATTaGTACCAAAAAGTCCATCATATACCACCTGAATGT +
Preference number: 6 (lower is better)
Translates to: IAGTVFLTLSLY*YQKVHHIPPEC
Trigger: ACATTCAGGTGGTATATGATGGACTTTTTGGTACAAATACAAACTCAAAGTTAAGAACACTGTCCCTGCAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8
CDS TCA 72 bp GGTTTAATCTTGATTTCTGGGCAAGTTAAACAAATGTaGTGTACAAATTGCAGGGACAGTGTTCTTAACTTT +
Preference number: 6 (lower is better)
Translates to: GLILISGQVKQM*CTNCRDSVLNF
Trigger: AAAGTTAAGAACACTGTCCCTGCAATTTGTACATCACATTTGTTTAACTTGCCCAGAAATCAAGATTAAACC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000102889.10
ENSMUST00000107557.9
ENSMUST00000144512.8
ENSMUST00000149301.8