Pregenerated sensors for ECM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028108Ensembl transcript IDs: ENSMUST00000029753.14, ENSMUST00000117507.10, ENSMUST00000123143.8, ENSMUST00000128885.8, ENSMUST00000131376.8, ENSMUST00000137912.8, ENSMUST00000147217.2, ENSMUST00000153026.8
Found 138 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCCCCGAGTTGGGCCCTaGTCCCCCAAGCCAGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILPRVGP*SPKPVA Trigger: TGCCACTGGCTTGGGGGAGCAGGGCCCAACTCGGGG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGGCTCTGGAGGGAGCTaGCCCGCCAAGGTGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILGSGGS*PAKVCG Trigger: GCCACACACCTTGGCGGGCCAGCTCCCTCCAGAGCC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGGGGCCCTGAGGACATaGCATTCTGGTGGACGGGGC | + |
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Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILGALRT*HSGGRG Trigger: GCCCCGTCCACCAGAATGGCATGTCCTCAGGGCCCC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGTGTGGTTGTGGCCCTaGCGGCAGCAGCGCTGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILVWLWP*RQQRWN Trigger: GTTCCAGCGCTGCTGCCGCCAGGGCCACAACCACAC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCGTCCCTGCTGGCAGTaGCGGGCTGGATTCCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILRPCWQ*RAGFQV Trigger: GACTTGGAATCCAGCCCGTCACTGCCAGCAGGGACG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCTGGCAGTGACGGGCTaGATTCCAAGTCCGGGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILLAVTG*IPSPGL Trigger: GAGCCCCGGACTTGGAATCCAGCCCGTCACTGCCAG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCAAGCCATCCAGCCGGTaGCCCCAGACACCTCTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILKPSSR*PQTPLR Trigger: ACGGAGAGGTGTCTGGGGCCACCGGCTGGATGGCTT...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGATGGCGTCAGTAGCTaGGAGGTTGCGTGGCACGGC | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILDGVSS*EVAWHG Trigger: GCCGTGCCACGCAACCTCCCAGCTACTGACGCCATC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGCCTGCAGCTGCCTCTaGATGGCGTCAGTAGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILACSCL*MASVAG Trigger: CCCAGCTACTGACGCCATCCAGAGGCAGCTGCAGGC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCAGGGGGATGGCTTCTTaGGGGACAGCAGGACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILRGMAS*GTAGPA Trigger: AGCTGGTCCTGCTGTCCCTCAAGAAGCCATCCCCCT...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTGGACAATCTCCTCCTaGGGCTGGGCAGGCGGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILWTISS*GWAGGF Trigger: AAACCCGCCTGCCCAGCCTCAGGAGGAGATTGTCCA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029753.14 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCAGTCTGCAGCACAGGTaGGGGCGGGTCTTGACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILSLQHR*GRVLTE Trigger: CTCTGTCAAGACCCGCCCCCACCTGTGCTGCAGACT...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCCACTTCCACAGAGCTaGCCCATGAGGTTGGGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILPLPQS*PMRLGV Trigger: CACCCCCAACCTCATGGGCCAGCTCTGTGGAAGTGG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGCTCCCCCAAGCCAGTaGCATTCCCAGTGTCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILAPPSQ*HSQCLQ Trigger: CTGGAGACACTGGGAATGCCACTGGCTTGGGGGAGC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCCCAGGCCTTCCATGTaGAAGTGTGGTTGTGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILPRPSM*KCGCGP Trigger: AGGGCCACAACCACACTTGCACATGGAAGGCCTGGG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCCCCGAGTTGGGCCCTaGTCCCCCAAGCCAGTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAPRVGP*SPKPVA Trigger: TGCCACTGGCTTGGGGGAGCAGGGCCCAACTCGGGG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTCTCCGGGTTTGTGGTaGGGAAGGGGGTGCTGCATA | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILSPGLW*GRGCCI Trigger: TATGCAGCACCCCCTTCCCCACCACAAACCCGGAGA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCACAGGGATGTCTTCTaGAGAGGAAGGGGGCTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILHRDVF*RGRGLH Trigger: GTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCCAAGTCCGGGGCTCTaGAGGGAGCTGGCCCGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAPSPGL*RELARQ Trigger: TTGGCGGGCCAGCTCCCTCCAGAGCCCCGGACTTGG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTTCCATGTGCAAGTGTaGTTGTGGCCCTGGCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILFHVQV*LWPWRQ Trigger: CTGCCGCCAGGGCCACAACCACACTTGCACATGGAA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGGGGCCCTGAGGACATaGCATTCTGGTGGACGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAGALRT*HSGGRG Trigger: GCCCCGTCCACCAGAATGGCATGTCCTCAGGGCCCC...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCTTTCTGCAGGGGGATaGCTTCTTGAGGGACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILLSAGG*LLEGQQ Trigger: CTGCTGTCCCTCAAGAAGCCATCCCCCTGCAGAAAG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGGCTCTGGAGGGAGCTaGCCCGCCAAGGTGTGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRGSGGS*PAKVCG Trigger: GCCACACACCTTGGCGGGCCAGCTCCCTCCAGAGCC...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGTGCAAGTGTGGTTGTaGCCCTGGCGGCAGCAGCGC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAVQVWL*PWRQQR Trigger: GCGCTGCTGCCGCCAGGGCCACAACCACACTTGCAC...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGGCCTGTTCTGGATATaGAAGCTCGCAGCAGCGGAT | + |
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Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILGLFWI*KLAAAD Trigger: ATCCGCTGCTGCGAGCTTCCATATCCAGAACAGGCC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGCAGCAGGCCTGTTCTaGATATGGAAGCTCGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILAAGLF*IWKLAA Trigger: TGCTGCGAGCTTCCATATCCAGAACAGGCCTGCTGC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCGTCCCTGCTGGCAGTaGCGGGCTGGATTCCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRARPCWQ*RAGFQV Trigger: GACTTGGAATCCAGCCCGTCACTGCCAGCAGGGACG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTGGACAATCTCCTCCTaGGGCTGGGCAGGCGGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAWTISS*GWAGGS Trigger: AGACCCGCCTGCCCAGCCTCAGGAGGAGATTGTCCA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGGAGAGGAAGGGGGCTaGACTTCTCTTTGTTCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILGEEGG*TSLCSS Trigger: TGAGGAACAAAGAGAAGTGCAGCCCCCTTCCTCTCC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGAGCCGAGTCAGAGCCTaGAGCTGCCTCTGGATGGCG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASRVRA*SCLWMA Trigger: CGCCATCCAGAGGCAGCTGCAGGCTCTGACTCGGCT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTCTCCGGGTTTGTaGTGGGGAAGGGGGTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAESPGL*WGRGCC Trigger: GCAGCACCCCCTTCCCCACCACAAACCCGGAGACTC...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTCCTTCTGTTCAATATaGACTTGGGGAGGGGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILSFCSI*TWGGGC Trigger: GCAGCCCCCTCCCCAAGTCCATATTGAACAGAAGGA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCTGGCAGTGACGGGCTaGATTCCAAGTCCGGGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRALAVTG*IPSPGL Trigger: GAGCCCCGGACTTGGAATCCAGCCCGTCACTGCCAG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGATCTGTTCCCCGAGTTaGGCCCTGCTCCCCCAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAICSPS*ALLPQA Trigger: GGCTTGGGGGAGCAGGGCCCAACTCGGGGAACAGAT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGAGGGGGATGGCTTCTTaGGGGACAGCAGGACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRARGMAS*GTAGPA Trigger: AGCTGGTCCTGCTGTCCCTCAAGAAGCCATCCCCCT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGAGGCAACTGGGGCCCTaGGGACATGCCATTCTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRARQLGP*GHAILV Trigger: CACCAGAATGGCATGTCCTCAGGGCCCCAGTTGCCT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR TCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGGAGACAGATGTTTTTaGCATTGTCCGGTGTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILGDRCF*HCPVWA Trigger: TGCCCACACCGGACAATGTCAAAAACATCTGTCTCC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILKRGGS*REVTEW Trigger: CCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTT...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGAGCCGAGTCAGAGCCTaGAGCTGCCTCTGGATGGCG | + |
|
Preference number: 4 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRSRVRA*SCLWMA Trigger: CGCCATCCAGAGGCAGCTGCAGGCTCTGACTCGGCT...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGAGTCTCCGGGTTTGTaGTGGGGAAGGGGGTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRESPGL*WGRGCC Trigger: GCAGCACCCCCTTCCCCACCACAAACCCGGAGACTC...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTGTTCAATATGGACTTaGGGAGGGGGCTGCTCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILCSIWT*GGGCSF Trigger: GAAAGAGCAGCCCCCTCCCCAAGTCCATATTGAACA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGAGTCTGCAGCACAGGTaGGGGCGGGTCTTGACAGAG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASLQHR*GRVLTE Trigger: CTCTGTCAAGACCCGCCCCCACCTGTGCTGCAGACT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGATGGCGTCAGTAGCTaGGAGGTTGCGTGGCACGGC | + |
|
Preference number: 4 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRDGVSS*EVAWHG Trigger: GCCGTGCCACGCAACCTCCCAGCTACTGACGCCATC...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCCACTTCCACAGAGCTaGCCCATGAGGTTGGGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAPLPQS*PMRLGV Trigger: CACCCCCAACCTCATGGGCCAGCTCTGTGGAAGTGG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCCTACTTCATGGAGGTaGTGGAAGAGGCGCTCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAPTSWR*WKRRSG Trigger: GCCAGAGCGCCTCTTCCAGCACCTCCATGAAGTAGG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCCCAGGCCTTCCATGTaGAAGTGTGGTTGTGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAPRPSM*KCGCGP Trigger: AGGGCCACAACCACACTTGCACATGGAAGGCCTGGG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGACTTCATGGAGGTGCTaGAAGAGGCGCTCTGGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRATSWRC*KRRSGV Trigger: GACGCCAGAGCGCCTCTTCCAGCACCTCCATGAAGT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTCTCCGGGTTTGTGGTaGGGAAGGGGGTGCTGCATA | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASPGLW*GRGCCI Trigger: TATGCAGCACCCCCTTCCCCACCACAAACCCGGAGA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR GCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTCAGGAAGGCAGATCTaGTTCAGATTGTCTGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILSGRQI*FRLSGE Trigger: TTCTCCAGACAATCTGAAGCAGATCTGCCTTCCTGA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCTGCTTCAGATTGTCTaGAGAAGGCCGTCCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRALLQIV*RRPSRR Trigger: CCTCCTGGACGGCCTTCTCCAGACAATCTGAAGCAG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGGCCTGTTCTGGATATaGAAGCTCGCAGCAGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAGLFWI*KLAAAD Trigger: ATCCGCTGCTGCGAGCTTCCATATCCAGAACAGGCC...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGCAGCAGGCCTGTTCTaGATATGGAAGCTCGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAAAGLF*IWKLAA Trigger: TGCTGCGAGCTTCCATATCCAGAACAGGCCTGCTGC...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTGGTGGGGAAGGGGGTaGTGCATAACCTACTTCATG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAWWGRG*CITYFM Trigger: CATGAAGTAGGTTATGCAGCACCCCCTTCCCCACCA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGCTTTCTGCAGGGGGATaGCTTCTTGAGGGACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRLSAGG*LLEGQQ Trigger: CTGCTGTCCCTCAAGAAGCCATCCCCCTGCAGAAAG...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTCCTTCTGTTCAATATaGACTTGGGGAGGGGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASFCSI*TWGGGC Trigger: GCAGCCCCCTCCCCAAGTCCATATTGAACAGAAGGA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAKRGGS*REVTEW Trigger: CCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTTGAAGCAGTTGATTTaGTTATCTTCAGGAGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: VMSVRGGWSRAEFPHLILLKQLI*LSSGDR Trigger: CCTGTCTCCTGAAGATAAGCAAATCAACTGCTTCAA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTGTTCAATATGGACTTaGGGAGGGGGCTGCTCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRACSIWT*GGGCSF Trigger: GAAAGAGCAGCCCCCTCCCCAAGTCCATATTGAACA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTCGGCCTCACAAAATTaGGTCATTGCATCCTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASASQN*VIASSH Trigger: GTGGGAGGATGCAATGACCCAATTTTGTGAGGCCGA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCGGATGGTCATATTCTaGATCAGCCCCGGAATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRARMVIF*ISPGIC Trigger: ACAGATTCCGGGGCTGATCCAGAATATGACCATCCG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CCA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGTCGGCCTCACAAAATTaGGTCATTGCATCCTCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRSASQN*VIASSH Trigger: GTGGGAGGATGCAATGACCCAATTTTGTGAGGCCGA...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
||
| CDS-3UTR CCA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGCGGATGGTCATATTCTaGATCAGCCCCGGAATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRRMVIF*ISPGIC Trigger: ACAGATTCCGGGGCTGATCCAGAATATGACCATCCG...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
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| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTCAGGAAGGCAGATCTaGTTCAGATTGTCTGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASGRQI*FRLSGE Trigger: TTCTCCAGACAATCTGAAGCAGATCTGCCTTCCTGA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR GCA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTTGAAGCAGTTGATTTaGTTATCTTCAGGAGACAGG | + |
|
Preference number: 4 (lower is better) Translates to: QIQEAFIVMSVRGGWSRALKQLI*LSSGDR Trigger: CCTGTCTCCTGAAGATAAGCAAATCAACTGCTTCAA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS TCA 90 bp | CCATCCAGCCGGTGGCCCCAGACACCTCTCCGTCCCTGCTGGCAGTaGCGGGCTGGATTCCAAGTCCGGGGCTCTGGAGGGAGCTGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: PSSRWPQTPLRPCWQ*RAGFQVRGSGGSWP Trigger: GGGCCAGCTCCCTCCAGAGCCCCGGACTTGGAATCCAGCCCGTCACTGCCAGCAGGGACGGAGAGGTGTCTGGGGCCACCGGCTGGATGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000153026.8 |
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| CDS CCA 90 bp | CGCTGGAACTCCGTCTCCAGCCGAGTCAGAGCCTGCAGCTGCCTCTaGATGGCGTCAGTAGCTGGGAGGTTGCGTGGCACGGCGCGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: RWNSVSSRVRACSCL*MASVAGRLRGTARK Trigger: CTTCCGCGCCGTGCCACGCAACCTCCCAGCTACTGACGCCATCCAGAGGCAGCTGCAGGCTCTGACTCGGCTGGAGACGGAGTTCCAGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS GCA 90 bp | CCCGCTCGCAGTATCCATCCAGGGTACCCTCCCAGGCCTTCCATGTaGAAGTGTGGTTGTGGCCCTGGCGGCAGCAGCGCTGGAACTCCG | + |
|
Preference number: 5 (lower is better) Translates to: PARSIHPGYPPRPSM*KCGCGPGGSSAGTP Trigger: CGGAGTTCCAGCGCTGCTGCCGCCAGGGCCACAACCACACTTGCACATGGAAGGCCTGGGAGGGTACCCTGGATGGATACTGCGAGCGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS GCA 90 bp | GTGGTCAACTCGGAGTCTCCGGGTTTGTGGTGGGGAAGGGGGTGCTaGATAACCTTCATGGAGGTGCTGGAAGAGGCGCTCTGGCGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: VVNSESPGLWWGRGC*ITFMEVLEEALWRH Trigger: ATGACGCCAGAGCGCCTCTTCCAGCACCTCCATGAAGGTTATGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTTGACCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000147217.2 |
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| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTCGGAGTCTCCGGGTTaGTGGTGGGGAAGGGGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILSESPG*WWGRGC Trigger: GCACCCCCTTCCCCACCACAAACCCGGAGACTCCGA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTCAGTAGCTGGGAGGTaGCGTGGCACGGCGCGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILSVAGR*RGTARK Trigger: CTTCCGCGCCGTGCCACGCAACCTCCCAGCTACTGA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS TCA 90 bp | ATGGAGGTGCTGGAAGAGGCGCTCTGGCGTCATCTCTCGCTGGTCTaGAGCCTTGAAGGCTCCCTCAGAGGCAGCAGAAGCAAGAGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: MEVLEEALWRHLSLV*SLEGSLRGSRSKSQ Trigger: TTGGCTCTTGCTTCTGCTGCCTCTGAGGGAGCCTTCAAGGCTTCAGACCAGCGAGAGATGACGCCAGAGCGCCTCTTCCAGCACCTCCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000137912.8 ENSMUST00000147217.2 ENSMUST00000153026.8 |
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| CDS GCA 90 bp | CAGTCTTCCTCGTACACAGGGATGTCTTCTGGAGAGGAAGGGGGCTaGACTACAGAACAGGCAGTTGTGAGGCAGACAGTGGGGTGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: QSSSYTGMSSGEEGG*TTEQAVVRQTVGWG Trigger: CCCCCACCCCACTGTCTGCCTCACAACTGCCTGTTCTGTAGTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTGTACGAGGAAGACTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000123143.8 ENSMUST00000131376.8 ENSMUST00000137912.8 ENSMUST00000153026.8 |
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| CDS CCA 90 bp | GAAGGCCAGTTTCTCCTCTTCGCCGCAGCAGGCCTGTTCTGGATATaGAAGCTCGCAGCAGCGGATGGTCATATTCTGGATCAGCCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: EGQFLLFAAAGLFWI*KLAAADGHILDQPR Trigger: CCGGGGCTGATCCAGAATATGACCATCCGCTGCTGCGAGCTTCCATATCCAGAACAGGCCTGCTGCGGCGAAGAGGAGAAACTGGCCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CCA 90 bp | CCTTCATGGAGGTGCTGGAAGAGGCGCTCTGGCGTCATCTCTCGCTaGTCTGAAGCCTTGAAGGCTCCCTCAGAGGCAGCAGAAGCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: PSWRCWKRRSGVISR*SEALKAPSEAAEAR Trigger: TCTTGCTTCTGCTGCCTCTGAGGGAGCCTTCAAGGCTTCAGACCAGCGAGAGATGACGCCAGAGCGCCTCTTCCAGCACCTCCATGAAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000137912.8 ENSMUST00000147217.2 |
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| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCATGTGCAAGTGTGGTaGTGGCCCTGGCGGCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILHVQVW*WPWRQQ Trigger: CTGCTGCCGCCAGGGCCACAACCACACTTGCACATG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS TCA 90 bp | CAGGGTCTTTCCACGAATTCCTCCGGGGACCACAGAGGTTCTCGATaGAGGCCAGTTTCTCCTCTTCGCCGCAGCAGGCCTGTTCTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: QGLSTNSSGDHRGSR*RPVSPLRRSRPVLD Trigger: ATCCAGAACAGGCCTGCTGCGGCGAAGAGGAGAAACTGGCCTTCATCGAGAACCTCTGTGGTCCCCGGAGGAATTCGTGGAAAGACCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS CCA 90 bp | ACTTCATGGAGGTGCTGGAAGAGGCGCTCTGGCGTCATCTCTCGCTaGTCTGAAGCCTTGAAGGCTCCCTCAGAGGCAGCAGAAGCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: TSWRCWKRRSGVISR*SEALKAPSEAAEAR Trigger: TCTTGCTTCTGCTGCCTCTGAGGGAGCCTTCAAGGCTTCAGACCAGCGAGAGATGACGCCAGAGCGCCTCTTCCAGCACCTCCATGAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000153026.8 |
||
| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCAACAGTCTAGGCGGTTaGTGTCGCTGCGGCAGCGAC | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILNSLGG*CRCGSD Trigger: GTCGCTGCCGCAGCGACACAAACCGCCTAGACTGTT...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCAGGTGGGGGCGGGTCTaGACAGAGAATTCGGCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILRWGRV*TENSAS Trigger: TGAGGCCGAATTCTCTGTCAAGACCCGCCCCCACCT...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS TCA 90 bp | CCCGCCAAGGTGTGTGGCTTCACCTCTTTCTGGACAATCTCCTCCTaGGGCTGGGCAGGCGGGTTTTCCTTCTGTTCAATATGGACTTGG | + |
|
Preference number: 5 (lower is better) Translates to: PAKVCGFTSFWTISS*GWAGGFSFCSIWTW Trigger: CCAAGTCCATATTGAACAGAAGGAAAACCCGCCTGCCCAGCCTCAGGAGGAGATTGTCCAGAAAGAGGTGAAGCCACACACCTTGGCGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029753.14 ENSMUST00000131376.8 ENSMUST00000137912.8 |
||
| CDS CCA 90 bp | CTCGATGAAGGCCAGTTTCTCCTCTTCGCCGCAGCAGGCCTGTTCTaGATATGGAAGCTCGCAGCAGCGGATGGTCATATTCTGGATCAG | + |
|
Preference number: 5 (lower is better) Translates to: LDEGQFLLFAAAGLF*IWKLAAADGHILDQ Trigger: CTGATCCAGAATATGACCATCCGCTGCTGCGAGCTTCCATATCCAGAACAGGCCTGCTGCGGCGAAGAGGAGAAACTGGCCTTCATCGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGTCGGAGTCTCCGGGTTaGTGGTGGGGAAGGGGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASESPG*WWGRGC Trigger: GCACCCCCTTCCCCACCACAAACCCGGAGACTCCGA...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCGGGCTGCACTTCTCTTaGTTCCTCAAAGAGGGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILGLHFS*FLKEGR Trigger: CCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCC...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGAGCTGGCCCATGAGGTaGGGGGTGACTCGGCTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: QIQEAFIVMSVRGGWSRASWPMR*GVTRLR Trigger: CCTCAGCCGAGTCACCCCCAACCTCATGGGCCAGCT...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS TCA 90 bp | CCCGCCAAGGTGTGTGGCTTCACCTCTTTCTGGACAATCTCCTCCTaGGGCTGGGCAGGCGGGTCTATTTCCTTCTGTTCAATATGGACT | + |
|
Preference number: 5 (lower is better) Translates to: PAKVCGFTSFWTISS*GWAGGSISFCSIWT Trigger: AGTCCATATTGAACAGAAGGAAATAGACCCGCCTGCCCAGCCTCAGGAGGAGATTGTCCAGAAAGAGGTGAAGCCACACACCTTGGCGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000153026.8 |
||
| CDS CCA 90 bp | CACAGGTGGGGGCGGGTCTTGACAGAGAATTCGGCCTCACAAAATTaGGTCATTGCATCCTCCCACACAAGCTTCAAACAGTCTAGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: HRWGRVLTENSASQN*VIASSHTSFKQSRR Trigger: CCGCCTAGACTGTTTGAAGCTTGTGTGGGAGGATGCAATGACCCAATTTTGTGAGGCCGAATTCTCTGTCAAGACCCGCCCCCACCTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000131376.8 |
||
| CDS-3UTR CAA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCAGGGGGATGGCTTCTaGAGGGACAGCAGGACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAQGDGF*RDSRTS Trigger: GCTGGTCCTGCTGTCCCTCAAGAAGCCATCCCCCTG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCTGTTCAATATGGACTaGGGGAGGGGGCTGCTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILLFNMD*GRGLLF Trigger: AAAGAGCAGCCCCCTCCCCAAGTCCATATTGAACAG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCCAGATCTGCTTCAGATaGTCTGGAGAAGGCCGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILQICFR*SGEGRP Trigger: TGGACGGCCTTCTCCAGACAATCTGAAGCAGATCTG...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCATGTGCAAGTGTGGTaGTGGCCCTGGCGGCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAHVQVW*WPWRQQ Trigger: CTGCTGCCGCCAGGGCCACAACCACACTTGCACATG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGAGCTGGCCCATGAGGTaGGGGGTGACTCGGCTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRSWPMR*GVTRLR Trigger: CCTCAGCCGAGTCACCCCCAACCTCATGGGCCAGCT...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
||
| CDS GCA 90 bp | GAAGGGGGCTGCACTTCTCTTTGTTCCTCAAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGGTCAACTCGGAGTCTCCGGGTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: EGGCTSLCSSKRGGS*REVTEWSTRSLRVC Trigger: ACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCCCCTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS GCA 90 bp | GGTCCCTCCCTTCCTTCTCTTTGTTCCTCAAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGGTCAACTCGGAGTCTCCGGGTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: GPSLPSLCSSKRGGS*REVTEWSTRSLRVC Trigger: ACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGGAAGGGAGGGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131376.8 ENSMUST00000153026.8 |
||
| CDS-3UTR CAA 90 bp | GTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGGAGTTCCCCCATCTAATCCTCTTCGGCCTCACAAAATaGGGTCATTGCATCCTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: VMSVRGGWSRAEFPHLILFGLTK*GHCILP Trigger: TGGGAGGATGCAATGACCCAATTTTGTGAGGCCGAA...GAGGATTAGATGGGGGAACTCCGCCCTACTCCACCCTCCTCGAACACTCATTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CCA 90 bp | GCCTGTTCTGGATATGGAAGCTCGCAGCAGCGGATGGTCATATTCTaGATCAGCCCCGGAATCTGTTTATGCTTGCTAAGGACCCTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: ACSGYGSSQQRMVIF*ISPGICLCLLRTLP Trigger: TGGAAGGGTCCTTAGCAAGCATAAACAGATTCCGGGGCTGATCCAGAATATGACCATCCGCTGCTGCGAGCTTCCATATCCAGAACAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGAACAGTCTAGGCGGTTaGTGTCGCTGCGGCAGCGAC | + |
|
Preference number: 5 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRNSLGG*CRCGSD Trigger: GTCGCTGCCGCAGCGACACAAACCGCCTAGACTGTT...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGAGGTGGGGGCGGGTCTaGACAGAGAATTCGGCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRRWGRV*TENSAS Trigger: TGAGGCCGAATTCTCTGTCAAGACCCGCCCCCACCT...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
||
| CDS GCA 90 bp | ACAGGGATGTCTTCTTCTCTTTGTTCCTCAAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGGTCAACTCGGAGTCTCCGGGTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: TGMSSSLCSSKRGGS*REVTEWSTRSLRVC Trigger: ACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGAAGACATCCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128885.8 |
||
| CDS-3UTR CAA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGGGCTGCACTTCTCTTaGTTCCTCAAAGAGGGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRGLHFS*FLKEGR Trigger: CCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCC...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCTGTTCAATATGGACTaGGGGAGGGGGCTGCTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: QIQEAFIVMSVRGGWSRALFNMD*GRGLLF Trigger: AAAGAGCAGCCCCCTCCCCAAGTCCATATTGAACAG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS-3UTR CAA 90 bp | CAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGGCGCAGATCTGCTTCAGATaGTCTGGAGAAGGCCGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: QIQEAFIVMSVRGGWSRAQICFR*SGEGRP Trigger: TGGACGGCCTTCTCCAGACAATCTGAAGCAGATCTG...CGCCCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS-3UTR CAA 90 bp | TGCCAAATCCAAGAGGCATTTATTGTAATGAGTGTTCGAGGAGGGTGGAGTAGGTTCGGCCTCACAAAATaGGGTCATTGCATCCTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: CQIQEAFIVMSVRGGWSRFGLTK*GHCILP Trigger: TGGGAGGATGCAATGACCCAATTTTGTGAGGCCGAA...CCTACTCCACCCTCCTCGAACACTCATTACAATAAATGCCTCTTGGATTTGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117507.10 |
||
| CDS CCA 72 bp | CGGGCTGGATTCCAAGTCCGGGGCTCTGGAGGGAGCTaGCCCGCCAAGGTGTGTGGCTTCACCTCTTTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RAGFQVRGSGGS*PAKVCGFTSFW Trigger: CCAGAAAGAGGTGAAGCCACACACCTTGGCGGGCCAGCTCCCTCCAGAGCCCCGGACTTGGAATCCAGCCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000153026.8 |
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| CDS CCA 72 bp | TCCGTCTCCAGCCGAGTCAGAGCCTGCAGCTGCCTCTaGATGGCGTCAGTAGCTGGGAGGTTGCGTGGCACG | + |
|
Preference number: 6 (lower is better) Translates to: SVSSRVRACSCL*MASVAGRLRGT Trigger: CGTGCCACGCAACCTCCCAGCTACTGACGCCATCCAGAGGCAGCTGCAGGCTCTGACTCGGCTGGAGACGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CCA 72 bp | CCGGGGCTCTGGAGGGAGCTGGCCCGCCAAGGTGTGTaGCTTCACCTCTTTCTGGACAATCTCCTCCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: PGLWRELARQGV*LHLFLDNLLLR Trigger: CCTCAGGAGGAGATTGTCCAGAAAGAGGTGAAGCCACACACCTTGGCGGGCCAGCTCCCTCCAGAGCCCCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000153026.8 |
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| CDS GCA 72 bp | TGGAACTCCGTCTCCAGCCGAGTCAGAGCCTGCAGCTaGCTCTGGATGGCGTCAGTAGCTGGGAGGTTGCGT | + |
|
Preference number: 6 (lower is better) Translates to: WNSVSSRVRACS*LWMASVAGRLR Trigger: ACGCAACCTCCCAGCTACTGACGCCATCCAGAGGCAGCTGCAGGCTCTGACTCGGCTGGAGACGGAGTTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS GCA 72 bp | AGTATCCATCCAGGGTACCCTCCCAGGCCTTCCATGTaGAAGTGTGGTTGTGGCCCTGGCGGCAGCAGCGCT | + |
|
Preference number: 6 (lower is better) Translates to: SIHPGYPPRPSM*KCGCGPGGSSA Trigger: AGCGCTGCTGCCGCCAGGGCCACAACCACACTTGCACATGGAAGGCCTGGGAGGGTACCCTGGATGGATACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS CAA 90 bp | GTCAGAGCCTGCAGCTGCCTCTGGATGGCGTCAGTAGCTGGGAGGTaGCGTGGCACGGCGCGGAAGCGTCTCAGGAGACAGATGTTTTTG | + |
|
Preference number: 6 (lower is better) Translates to: VRACSCLWMASVAGR*RGTARKRLRRQMFL Trigger: CAAAAACATCTGTCTCCTGAGACGCTTCCGCGCCGTGCCACGCAACCTCCCAGCTACTGACGCCATCCAGAGGCAGCTGCAGGCTCTGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS TCA 72 bp | CTGGAAGAGGCGCTCTGGCGTCATCTCTCGCTGGTCTaGAGCCTTGAAGGCTCCCTCAGAGGCAGCAGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: LEEALWRHLSLV*SLEGSLRGSRS Trigger: GCTTCTGCTGCCTCTGAGGGAGCCTTCAAGGCTTCAGACCAGCGAGAGATGACGCCAGAGCGCCTCTTCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000137912.8 ENSMUST00000147217.2 ENSMUST00000153026.8 |
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| CDS CCA 72 bp | GAGAATCGCTCCTCCCCACGCAGTCTGCAGCACAGGTaGGGGCGGGTCTTGACAGAGAATTCGGCCTCACAA | + |
|
Preference number: 6 (lower is better) Translates to: ENRSSPRSLQHR*GRVLTENSASQ Trigger: TTGTGAGGCCGAATTCTCTGTCAAGACCCGCCCCCACCTGTGCTGCAGACTGCGTGGGGAGGAGCGATTCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS GCA 72 bp | AACTCGGAGTCTCCGGGTTTGTGGTGGGGAAGGGGGTaGTGCATAACCTTCATGGAGGTGCTGGAAGAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: NSESPGLWWGRG*CITFMEVLEEA Trigger: CGCCTCTTCCAGCACCTCCATGAAGGTTATGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000147217.2 |
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| CDS CCA 72 bp | ATTCTGGTGGACGGGGCAGGGTCGGAGCAGGTAGTCTaGGCGAGGAGCTTCCTTCTGGAAGCAAGAGAATCG | + |
|
Preference number: 6 (lower is better) Translates to: ILVDGAGSEQVV*ARSFLLEARES Trigger: CGATTCTCTTGCTTCCAGAAGGAAGCTCCTCGCCCAGACTACCTGCTCCGACCCTGCCCCGTCCACCAGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS CAA 90 bp | GGGTCATTGCATCCTCCCACACAAGCTTCAAACAGTCTAGGCGGTTaGTGTCGCTGCGGCAGCGACAGCAGCGGGAGTATCCGGTCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: GSLHPPTQASNSLGG*CRCGSDSSGSIRSP Trigger: TGGAGACCGGATACTCCCGCTGCTGTCGCTGCCGCAGCGACACAAACCGCCTAGACTGTTTGAAGCTTGTGTGGGAGGATGCAATGACCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000131376.8 |
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| CDS GCA 72 bp | ACACAAGCTTCAAACAGTCTAGGCGGTTTGTGTCGCTaGGGCAGCGACAGCAGCGGGAGTATCCGGTCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: TQASNSLGGLCR*GSDSSGSIRSP Trigger: TGGAGACCGGATACTCCCGCTGCTGTCGCTGCCGCAGCGACACAAACCGCCTAGACTGTTTGAAGCTTGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 |
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| CDS CAA 72 bp | CATCCTCCCACACAAGCTTCAAACAGTCTAGGCGGTTaGTGTCGCTGCGGCAGCGACAGCAGCGGGAGTATC | + |
|
Preference number: 6 (lower is better) Translates to: HPPTQASNSLGG*CRCGSDSSGSI Trigger: GATACTCCCGCTGCTGTCGCTGCCGCAGCGACACAAACCGCCTAGACTGTTTGAAGCTTGTGTGGGAGGATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 |
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| CDS GCA 72 bp | AACTCGGAGTCTCCGGGTTTGTGGTGGGGAAGGGGGTaGTGCATAACCTACTTCATGGAGGTGCTGGAAGAG | + |
|
Preference number: 6 (lower is better) Translates to: NSESPGLWWGRG*CITYFMEVLEE Trigger: CTCTTCCAGCACCTCCATGAAGTAGGTTATGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000153026.8 |
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| CDS CCA 72 bp | TACAGAGTGGTCAACTCGGAGTCTCCGGGTTTGTGGTaGGGAAGGGGGTGCTGCATAACCTTCATGGAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: YRVVNSESPGLW*GRGCCITFMEV Trigger: CACCTCCATGAAGGTTATGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTTGACCACTCTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000147217.2 |
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| CDS CAA 72 bp | GGGAGGGGGCTGCTCTTTCTGCAGGGGGATGGCTTCTaGAGGGACAGCAGGACCAGCTTTATCTACATTAGG | + |
|
Preference number: 6 (lower is better) Translates to: GRGLLFLQGDGF*RDSRTSFIYIR Trigger: CCTAATGTAGATAAAGCTGGTCCTGCTGTCCCTCAAGAAGCCATCCCCCTGCAGAAAGAGCAGCCCCCTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 7 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000137912.8 ENSMUST00000153026.8 |
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| CDS GCA 72 bp | TCGTACACAGGGATGTCTTCTGGAGAGGAAGGGGGCTaGACTACAGAACAGGCAGTTGTGAGGCAGACAGTG | + |
|
Preference number: 6 (lower is better) Translates to: SYTGMSSGEEGG*TTEQAVVRQTV Trigger: CACTGTCTGCCTCACAACTGCCTGTTCTGTAGTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTGTACGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000123143.8 ENSMUST00000131376.8 ENSMUST00000137912.8 ENSMUST00000153026.8 |
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| CDS CCA 72 bp | TACAGAGTGGTCAACTCGGAGTCTCCGGGTTTGTGGTaGGGAAGGGGGTGCTGCATAACCTACTTCATGGAG | + |
|
Preference number: 6 (lower is better) Translates to: YRVVNSESPGLW*GRGCCITYFME Trigger: CTCCATGAAGTAGGTTATGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTTGACCACTCTGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000153026.8 |
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| CDS CCA 72 bp | AGTGGGCCAGTCTTCCTCGTACACAGGGATGTCTTCTaGAGAGGAAGGGGGCTGCACTTCTCTTTGTTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: SGPVFLVHRDVF*RGRGLHFSLFL Trigger: GAGGAACAAAGAGAAGTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTGTACGAGGAAGACTGGCCCACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS TCA 72 bp | GTGTGTGGCTTCACCTCTTTCTGGACAATCTCCTCCTaGGGCTGGGCAGGCGGGTCTATTTCCTTCTGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: VCGFTSFWTISS*GWAGGSISFCS Trigger: TGAACAGAAGGAAATAGACCCGCCTGCCCAGCCTCAGGAGGAGATTGTCCAGAAAGAGGTGAAGCCACACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000117507.10 ENSMUST00000123143.8 ENSMUST00000128885.8 ENSMUST00000153026.8 |
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| CDS GCA 72 bp | TCGTACACAGGGATGTCTTCTGGAGAGGAAGGGGGCTaGACTTCTCTTTGTTCCTCAAAGAGGGGAGGGTCA | + |
|
Preference number: 6 (lower is better) Translates to: SYTGMSSGEEGG*TSLCSSKRGGS Trigger: TGACCCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTGTACGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CCA 72 bp | TCAAAGAGGGGAGGGTCATGCAGAGAAGTTACAGAGTaGTCAACTCGGAGTCTCCGGGTTTGTGGTGGGGAA | + |
|
Preference number: 6 (lower is better) Translates to: SKRGGSCREVTE*STRSLRVCGGE Trigger: TTCCCCACCACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000147217.2 ENSMUST00000153026.8 |
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| CDS CCA 72 bp | TTTCTCCTCTTCGCCGCAGCAGGCCTGTTCTGGATATaGAAGCTCGCAGCAGCGGATGGTCATATTCTGGAT | + |
|
Preference number: 6 (lower is better) Translates to: FLLFAAAGLFWI*KLAAADGHILD Trigger: ATCCAGAATATGACCATCCGCTGCTGCGAGCTTCCATATCCAGAACAGGCCTGCTGCGGCGAAGAGGAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CAA 72 bp | AGAAGTTACAGAGTGGTCAACTCGGAGTCTCCGGGTTaGTGGTGGGGAAGGGGGTGCTGCATAACCTACTTC | + |
|
Preference number: 6 (lower is better) Translates to: RSYRVVNSESPG*WWGRGCCITYF Trigger: GAAGTAGGTTATGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000153026.8 |
||
| CDS CAA 72 bp | AGAAGTTACAGAGTGGTCAACTCGGAGTCTCCGGGTTaGTGGTGGGGAAGGGGGTGCTGCATAACCTTCATG | + |
|
Preference number: 6 (lower is better) Translates to: RSYRVVNSESPG*WWGRGCCITFM Trigger: CATGAAGGTTATGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000128885.8 ENSMUST00000131376.8 ENSMUST00000147217.2 |
||
| CDS TCA 72 bp | GTGTGTGGCTTCACCTCTTTCTGGACAATCTCCTCCTaGGGCTGGGCAGGCGGGTTTTCCTTCTGTTCAATA | + |
|
Preference number: 6 (lower is better) Translates to: VCGFTSFWTISS*GWAGGFSFCSI Trigger: TATTGAACAGAAGGAAAACCCGCCTGCCCAGCCTCAGGAGGAGATTGTCCAGAAAGAGGTGAAGCCACACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029753.14 ENSMUST00000131376.8 ENSMUST00000137912.8 |
||
| CDS CAA 72 bp | GATGTCTTCTGGAGAGGAAGGGGGCTGCACTTCTCTTaGTTCCTCAAAGAGGGGAGGGTCATGCAGAGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: DVFWRGRGLHFS*FLKEGRVMQRS Trigger: ACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCCCCTTCCTCTCCAGAAGACATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CAA 72 bp | GTCATATTCTGGATCAGCCCCGGAATCTGTTTATGCTaGCTAAGGACCCTTCCACTTCCACAGAGCTGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: VIFWISPGICLC*LRTLPLPQSWP Trigger: GGGCCAGCTCTGTGGAAGTGGAAGGGTCCTTAGCAAGCATAAACAGATTCCGGGGCTGATCCAGAATATGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CAA 90 bp | GTACACAGGGATGTCTTCTGGAGAGGAAGGGGGCTGCACTTCTCTTaGTTCCTCAAAGAGGGGAGGGTCATGCAGAGAAGTTACAGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: VHRDVFWRGRGLHFS*FLKEGRVMQRSYRV Trigger: CACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTGTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
||
| CDS CCA 72 bp | AGGCCTGTTCTGGATATGGAAGCTCGCAGCAGCGGATaGTCATATTCTGGATCAGCCCCGGAATCTGTTTAT | + |
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Preference number: 6 (lower is better) Translates to: RPVLDMEARSSG*SYSGSAPESVY Trigger: ATAAACAGATTCCGGGGCTGATCCAGAATATGACCATCCGCTGCTGCGAGCTTCCATATCCAGAACAGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS CAA 90 bp | GAAAGTGGGCCAGTCTTCCTCGTACACAGGGATGTCTTCTTCTCTTaGTTCCTCAAAGAGGGGAGGGTCATGCAGAGAAGTTACAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: ESGPVFLVHRDVFFS*FLKEGRVMQRSYRV Trigger: CACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGAAGACATCCCTGTGTACGAGGAAGACTGGCCCACTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128885.8 |
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| CDS GCA 72 bp | TGCACTTCTCTTTGTTCCTCAAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGGTCAACTCGGAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: CTSLCSSKRGGS*REVTEWSTRSL Trigger: GAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 ENSMUST00000147217.2 |
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| CDS GCA 72 bp | ATGGTCATATTCTGGATCAGCCCCGGAATCTGTTTATaGTTGCTAAGGACCCTTCCACTTCCACAGAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: MVIFWISPGICL*LLRTLPLPQSW Trigger: CCAGCTCTGTGGAAGTGGAAGGGTCCTTAGCAAGCATAAACAGATTCCGGGGCTGATCCAGAATATGACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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| CDS GCA 72 bp | CTTCCTTCTCTTTGTTCCTCAAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGGTCAACTCGGAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LPSLCSSKRGGS*REVTEWSTRSL Trigger: GAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000131376.8 ENSMUST00000153026.8 |
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| CDS GCA 72 bp | TCTTCTTCTCTTTGTTCCTCAAAGAGGGGAGGGTCATaGAGAGAAGTTACAGAGTGGTCAACTCGGAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSSLCSSKRGGS*REVTEWSTRSL Trigger: GAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGACCCTCCCCTCTTTGAGGAACAAAGAGAAGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128885.8 |
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| CDS CAA 72 bp | CACGTTCCTCAGGTAGTTGGTATTGAAGCAGTTGATTaGCTTATCTTCAGGAGACAGGTCACAGCAGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: HVPQVVGIEAVD*LIFRRQVTAEG Trigger: GCCCTCTGCTGTGACCTGTCTCCTGAAGATAAGCAAATCAACTGCTTCAATACCAACTACCTGAGGAACGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029753.14 ENSMUST00000117507.10 |
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