Pregenerated sensors for ECHDC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039063Ensembl transcript IDs: ENSMUST00000042658.5
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTCTGCTCTGGGTCCTTGCCCTGTTCTGGGCAGCTTTTATCCTCTaGTTTAGTAGTGAGGGCAAGGCCCTTGCTTTGTGCCCATCAGAG | + |
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Preference number: 1 (lower is better) Translates to: GLLWVLALFWAAFIL*FSSEGKALALCPSE Trigger: CTCTGATGGGCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAGGATAAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 90 bp | GCGACTCTCATTGGATGGGGTCTGCTCTGGGTCCTTGCCCTGTTCTaGGCAGCTTTTATCCTCTGGTTTAGTAGTGAGGGCAAGGCCCTT | + |
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Preference number: 1 (lower is better) Translates to: ATLIGWGLLWVLALF*AAFILWFSSEGKAL Trigger: AAGGGCCTTGCCCTCACTACTAAACCAGAGGATAAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 90 bp | GTTCTGAACTGTGTCCTGAGGAAGCGACTCTCATTGGATGGGGTCTaGTCTGGGTCCTTGCCCTGTTCTGGGCAGCTTTTATCCTCTGGT | + |
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Preference number: 1 (lower is better) Translates to: VLNCVLRKRLSLDGV*SGSLPCSGQLLSSG Trigger: ACCAGAGGATAAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACACAGTTCAGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 90 bp | AGGCTGGCAATGTTCTCTTACAATCAAGAGGTGGCAGTATATGGTTaGGTTGAGAGGAGGAGATGGGAGGGCTGGGGGTCAGCTAGGGCT | + |
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Preference number: 1 (lower is better) Translates to: RLAMFSYNQEVAVYG*VERRRWEGWGSARA Trigger: AGCCCTAGCTGACCCCCAGCCCTCCCATCTCCTCCTCTCAACCCAACCATATACTGCCACCTCTTGATTGTAAGAGAACATTGCCAGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 90 bp | GAGCACAGTTCTGAACTGTGTCCTGAGGAAGCGACTCTCATTGGATaGGGTCTGCTCTGGGTCCTTGCCCTGTTCTGGGCAGCTTTTATC | + |
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Preference number: 1 (lower is better) Translates to: EHSSELCPEEATLIG*GLLWVLALFWAAFI Trigger: GATAAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACACAGTTCAGAACTGTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 90 bp | TTTTCAGTGGGGAGATGGTCTCATGGAGATTTGAACTGTTCAACTTaGCATGAACAACCAGAACGGACTGTGCCTGAAGGACACTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: FSVGRWSHGDLNCST*HEQPERTVPEGHCR Trigger: TCTGCAGTGTCCTTCAGGCACAGTCCGTTCTGGTTGTTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 90 bp | GCTTTTATCCTCTGGTTTAGTAGTGAGGGCAAGGCCCTTGCTTTGTaGCCATCAGAGTGGACATACAAAGAGAATATTCTCTCTTTTCTT | + |
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Preference number: 1 (lower is better) Translates to: AFILWFSSEGKALAL*PSEWTYKENILSFL Trigger: AAGAAAAGAGAGAATATTCTCTTTGTATGTCCACTCTGATGGGCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAGGATAAAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 90 bp | GACACTGCAGAAGCATGGGGGCGGCACCCTTCCTTCACGCTTCACTaGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTG | + |
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Preference number: 2 (lower is better) Translates to: DTAEAWGRHPSFTLH*TVLCMGSTSLQAPL Trigger: CAACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGCGTGAAGGAAGGGTGCCGCCCCCATGCTTCTGCAGTGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 90 bp | AAGCTGAGCACAGTTCTGAACTGTGTCCTGAGGAAGCGACTCTCATaGGATGGGGTCTGCTCTGGGTCCTTGCCCTGTTCTGGGCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: KLSTVLNCVLRKRLS*DGVCSGSLPCSGQL Trigger: AAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACACAGTTCAGAACTGTGCTCAGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCACAGTTCTGAACTGTGTCCTGAGGAAGCGACTCTCATTGGATGGGGTCGGCTCCGTTGGGTACTaGGGTTTCTGTCACAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: LSTVLNCVLRKRLSLDGVGSVGY*GFCHSL Trigger: CAGGCTGTGACAGAAACCCCAGTACCCAACGGAGCC...GACCCCATCCAATGAGAGTCGCTTCCTCAGGACACAGTTCAGAACTGTGCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR-3UTR TCA 90 bp | CTTCACGCTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCAGTATATGGTTGGGTTaGGAGGAGGAGATGGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: LHASLDCPLYGQHLTSGSSIWLG*EEEMGG Trigger: CCCTCCCATCTCCTCCTCTCAACCCAACCATATACT...GGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGCGTGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR-3UTR CCA 90 bp | CACAGCCTGCACACCCCAGTGCATATTAACCTGCCCACTGACCTAGCAAGTCGTGTGGCAGTATATGGTTaGGTTGAGAGGAGGAGATGG | + |
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Preference number: 2 (lower is better) Translates to: HSLHTPVHINLPTDLASRVAVYG*VERRRW Trigger: CCATCTCCTCCTCTCAACCCAACCATATACTGCCAC...ACGACTTGCTAGGTCAGTGGGCAGGTTAATATGCACTGGGGTGTGCAGGCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR-3UTR CCA 90 bp | CACGCTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTCTTACAATCAAGAGGTaGCAGTATATGGTTGGGTTG | + |
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Preference number: 2 (lower is better) Translates to: HASLDCPLYGQHLTSGSVLTIKR*QYMVGL Trigger: CAACCCAACCATATACTGCCACCTCTTGATTGTAAG...AACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGCGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR-3UTR TCA 90 bp | CAGCTTTTATCCTCTGGTTTAGTAGTGAGGGCAAGGCCCTTGCTTTGTGCCCATGGTCTCATGGAGATTTaGACTGTTCAACTTGCCATG | + |
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Preference number: 2 (lower is better) Translates to: QLLSSGLVVRARPLLCAHGLMEI*TVQLAM Trigger: CATGGCAAGTTGAACAGTTCAAATCTCCATGAGACC...ATGGGCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAGGATAAAAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR-3UTR CCA 90 bp | ACTCTCATTGGATGGGGTCTGCTCTGGGTCCTTGCCCTGTTCTGGGCAGCTTTTTTGTGCCCATCAGAGTaGACATACAAAGAGAATATT | + |
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Preference number: 2 (lower is better) Translates to: TLIGWGLLWVLALFWAAFLCPSE*TYKENI Trigger: AATATTCTCTTTGTATGTCCACTCTGATGGGCACAA...AAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGT 48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 90 bp | GCAGCTTTTATCCTCTGGTTTAGTAGTGAGGGCAAGGCCCTTGCTTaGTGCCCATCAGAGTGGACATACAAAGAGAATATTCTCTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: AAFILWFSSEGKALA*CPSEWTYKENILSF Trigger: AAAAGAGAGAATATTCTCTTTGTATGTCCACTCTGATGGGCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAGGATAAAAGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 90 bp | GTAGAATCAAGAAATTTTTCAGTGGGGAGATGGTCTCATGGAGATTaGAACTGTTCAACTTGCCATGAACAACCAGAACGGACTGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: VESRNFSVGRWSHGD*NCSTCHEQPERTVP Trigger: AGGCACAGTCCGTTCTGGTTGTTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAAATTTCTTGATTCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 72 bp | CAGGCTCCGTTGGGTACTGGGGTTTCTGTCACAGCCTaGACACCCCAGTGCATATTAACCTGCCCACTGACC | + |
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Preference number: 3 (lower is better) Translates to: QAPLGTGVSVTA*TPQCILTCPLT Trigger: GGTCAGTGGGCAGGTTAATATGCACTGGGGTGTGCAGGCTGTGACAGAAACCCCAGTACCCAACGGAGCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 72 bp | CATGAACAACCAGAACGGACTGTGCCTGAAGGACACTaGAGAAGCATGGGGGCGGCACCCTTCCTTCACGCT | + |
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Preference number: 3 (lower is better) Translates to: HEQPERTVPEGH*RSMGAAPFLHA Trigger: AGCGTGAAGGAAGGGTGCCGCCCCCATGCTTCTGCAGTGTCCTTCAGGCACAGTCCGTTCTGGTTGTTCATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 72 bp | TATGGGCAGCACCTCACTTCAGGCTCCGTTGGGTACTaGGGTTTCTGTCACAGCCTGCACACCCCAGTGCAT | + |
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Preference number: 3 (lower is better) Translates to: YGQHLTSGSVGY*GFCHSLHTPVH Trigger: ATGCACTGGGGTGTGCAGGCTGTGACAGAAACCCCAGTACCCAACGGAGCCTGAAGTGAGGTGCTGCCCATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 72 bp | CAGAACGGACTGTGCCTGAAGGACACTGCAGAAGCATaGGGGCGGCACCCTTCCTTCACGCTTCACTTGACT | + |
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Preference number: 3 (lower is better) Translates to: QNGLCLKDTAEA*GRHPSFTLHLT Trigger: AGTCAAGTGAAGCGTGAAGGAAGGGTGCCGCCCCCATGCTTCTGCAGTGTCCTTCAGGCACAGTCCGTTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 72 bp | CCTGAGGAAGCGACTCTCATTGGATGGGGTCTGCTCTaGGTCCTTGCCCTGTTCTGGGCAGCTTTTATCCTC | + |
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Preference number: 3 (lower is better) Translates to: PEEATLIGWGLL*VLALFWAAFIL Trigger: GAGGATAAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 72 bp | TCTGAACTGTGTCCTGAGGAAGCGACTCTCATTGGATaGGGTCTGCTCTGGGTCCTTGCCCTGTTCTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: SELCPEEATLIG*GLLWVLALFWA Trigger: TGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACACAGTTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 72 bp | ACTGTTCAACTTGCCATGAACAACCAGAACGGACTGTaGCTGAAGGACACTGCAGAAGCATGGGGGCGGCAC | + |
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Preference number: 3 (lower is better) Translates to: TVQLAMNNQNGL*LKDTAEAWGRH Trigger: GTGCCGCCCCCATGCTTCTGCAGTGTCCTTCAGGCACAGTCCGTTCTGGTTGTTCATGGCAAGTTGAACAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 72 bp | TGTGTCCTGAGGAAGCGACTCTCATTGGATGGGGTCTaGTCTGGGTCCTTGCCCTGTTCTGGGCAGCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: CVLRKRLSLDGV*SGSLPCSGQLL Trigger: TAAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 72 bp | TGGGTCCTTGCCCTGTTCTGGGCAGCTTTTATCCTCTaGTTTAGTAGTGAGGGCAAGGCCCTTGCTTTGTGC | + |
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Preference number: 3 (lower is better) Translates to: WVLALFWAAFIL*FSSEGKALALC Trigger: GCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAGGATAAAAGCTGCCCAGAACAGGGCAAGGACCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 72 bp | GGGAGATGGTCTCATGGAGATTTGAACTGTTCAACTTaGCATGAACAACCAGAACGGACTGTGCCTGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: GRWSHGDLNCST*HEQPERTVPEG Trigger: TCCTTCAGGCACAGTCCGTTCTGGTTGTTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR GCA 72 bp | CTCTGGTTTAGTAGTGAGGGCAAGGCCCTTGCTTTGTaGCCATCAGAGTGGACATACAAAGAGAATATTCTC | + |
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Preference number: 3 (lower is better) Translates to: LWFSSEGKALAL*PSEWTYKENIL Trigger: GAGAATATTCTCTTTGTATGTCCACTCTGATGGGCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR TCA 72 bp | GAAATTTTTCAGTGGGGAGATGGTCTCATGGAGATTTaGACTGTTCAACTTGCCATGAACAACCAGAACGGA | + |
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Preference number: 3 (lower is better) Translates to: EIFQWGDGLMEI*TVQLAMNNQNG Trigger: TCCGTTCTGGTTGTTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAAATTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 72 bp | TTCCTGGTAGAATCAAGAAATTTTTCAGTGGGGAGATaGTCTCATGGAGATTTGAACTGTTCAACTTGCCAT | + |
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Preference number: 3 (lower is better) Translates to: FLVESRNFSVGR*SHGDLNCSTCH Trigger: ATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAAATTTCTTGATTCTACCAGGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CCA 72 bp | AGAGAATATTCTCTCTTTTCTTTTCTTAGCTTGCGGTaGGTTAGAAATGAAATGACCCAGCTCTATAAATAT | + |
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Preference number: 3 (lower is better) Translates to: REYSLFSFLSLR*VRNEMTQLYKY Trigger: ATATTTATAGAGCTGGGTCATTTCATTTCTAACCCACCGCAAGCTAAGAAAAGAAAAGAGAGAATATTCTCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | TGTCCTGAGGAAGCGACTCTCATTGGATGGGGTCTGCTCTGGGTCCTTGCCCTGCCCCGCAGGTCCTGCTaGCCCTGGGCTGCAGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: CPEEATLIGWGLLWVLALPRRSC*PWAAEA Trigger: GGCTTCTGCAGCCCAGGGTCAGCAGGACCTGCGGGG...CAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CCA 90 bp | TGTCCTGAGGAAGCGACTCTCATTGGATGGGGTCTGCTCTGGGTCCTTGCCCTGCAGCTGGCCACGAGCTaGCAGCCTGCAGCTGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: CPEEATLIGWGLLWVLALQLATS*QPAAVA Trigger: GGCCACAGCTGCAGGCTGCCAGCTCGTGGCCAGCTG...CAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CCA 90 bp | TGTCCTGAGGAAGCGACTCTCATTGGATGGGGTCTGCTCTGGGTCCTTGCCCTGTGGCGCAAGGCCTCCTaGGCAGAAATGGGCTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: CPEEATLIGWGLLWVLALWRKAS*AEMGSP Trigger: TGGGGAGCCCATTTCTGCCCAGGAGGCCTTGCGCCA...CAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 72 bp | GTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTaGGGTACTGGGGTTTCTGTCACAGCCTGCACACCC | + |
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Preference number: 4 (lower is better) Translates to: VLCMGSTSLQAP*GTGVSVTACTP Trigger: GGGTGTGCAGGCTGTGACAGAAACCCCAGTACCCAACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | CACGCTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTCTGTGGCCAAGCCATTaGCCATGGCAAGGATGGGGA | + |
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Preference number: 4 (lower is better) Translates to: HASLDCPLYGQHLTSGSVLWPSH*PWQGWG Trigger: TCCCCATCCTTGCCATGGTCAATGGCTTGGCCACAG...AACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGCGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | CCTAGCAAGTCGTTCCCTCCCCTGTATTCATTTCCCACAGAACCATGGCATTCACTGCTGACCCTGGGCTaGAGAAGCCGGCGGAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: PSKSFPPLYSFPTEPWHSLLTLG*RSRRRE Trigger: CTCTCTCCGCCGGCTTCTGCAGCCCAGGGTCAGCAG...TGAATGCCATGGTTCTGTGGGAAATGAATACAGGGGAGGGAACGACTTGCTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | ACTTGCCATGAACAACCAGAACGGACTGTGCCTGAAGGACACTGCAGAAGCATGCACGAGCTGGCAGCCTaGAGCTGTGGCCAAGCCATT | + |
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Preference number: 4 (lower is better) Translates to: TCHEQPERTVPEGHCRSMHELAA*SCGQAI Trigger: AATGGCTTGGCCACAGCTGCAGGCTGCCAGCTCGTG...CATGCTTCTGCAGTGTCCTTCAGGCACAGTCCGTTCTGGTTGTTCATGGCAAGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | ACCCCAGTGCATATTAACCTGCCCACTGACCTAGCAAGTCGTTCCCTCCCCTGTGCTTCAATTCCTTCCTaGCCATCCTGCAAGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TPVHINLPTDLASRSLPCASIPS*PSCKAR Trigger: CCTGGCCTTGCAGGATGGGCAGGAAGGAATTGAAGC...ACAGGGGAGGGAACGACTTGCTAGGTCAGTGGGCAGGTTAATATGCACTGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | ACTTGCCATGAACAACCAGAACGGACTGTGCCTGAAGGACACTGCAGAAGCATGCCTTCCTGCCCATCCTaGAAGGCCAGGTTGTCTACC | + |
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Preference number: 4 (lower is better) Translates to: TCHEQPERTVPEGHCRSMPSCPS*KARLST Trigger: GGTAGACAACCTGGCCTTGCAGGATGGGCAGGAAGG...CATGCTTCTGCAGTGTCCTTCAGGCACAGTCCGTTCTGGTTGTTCATGGCAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 72 bp | ACAGTTCTGAACTGTGTCCTGAGGAAGCGACTCTCATaGGATGGGGTCTGCTCTGGGTCCTTGCCCTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: TVLNCVLRKRLS*DGVCSGSLPCS Trigger: AGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGTCGCTTCCTCAGGACACAGTTCAGAACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | GGCCCTTGCTTTGTGCCCATCAGAGTGGACATACAAAGAGAATATTCTCTCTTTCCCATGGGTTGCGCCTaGGCCAGCTGGGCCACTTCA | + |
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Preference number: 4 (lower is better) Translates to: GPCFVPIRVDIQREYSLFPMGCA*ASWATS Trigger: TGAAGTGGCCCAGCTGGCTCAGGCGCAACCCATGGG...AAAGAGAGAATATTCTCTTTGTATGTCCACTCTGATGGGCACAAAGCAAGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | CACGCTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTTATTCTCATGGTCTCTaGCTCCAGCTGTTCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: HASLDCPLYGQHLTSGSVYSHGL*LQLFLW Trigger: CCAGAGGAACAGCTGGAGGCAGAGACCATGAGAATA...AACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | CATGAACAACCAGAACGGACTGTGCCTGAAGGACACTGCAGAAGCATGGGGGCGTCACTTTCAGCTTCGTaGAGAATGTCACTTCGGAGA | + |
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Preference number: 4 (lower is better) Translates to: HEQPERTVPEGHCRSMGASLSAS*RMSLRR Trigger: TCTCCGAAGTGACATTCTTCACGAAGCTGAAAGTGA...CGCCCCCATGCTTCTGCAGTGTCCTTCAGGCACAGTCCGTTCTGGTTGTTCATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | CACAGCCTGCACACCCCAGTGCATATTAACCTGCCCACTGACCTAGCAAGTCGTCACAGGGCCCTCGGCTaGAATTATAATGACTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: HSLHTPVHINLPTDLASRHRALG*NYNDFQ Trigger: CTGAAAGTCATTATAATTTCAGCCGAGGGCCCTGTG...ACGACTTGCTAGGTCAGTGGGCAGGTTAATATGCACTGGGGTGTGCAGGCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | CTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTGGGTGCTTTCTCTTCTGGATaGAGGCTTCAATTCCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LHLTVLCMGSTSLQAPLGAFSSG*RLQFLP Trigger: AGGAAGGAATTGAAGCCTTCATCCAGAAGAGAAAGC...ACCCAACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CCA 90 bp | GCTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTGGGGGTTCTAAGGTCTTGTaGCAGCTGTTTGTAAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: ASLDCPLYGQHLTSGSVGGSKVL*QLFVKG Trigger: ACCTTTTACAAACAGCTGCCACAAGACCTTAGAACC...CCCAACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | CACAGCCTGCACACCCCAGTGCATATTAACCTGCCCACTGACCTAGCAAGTCGTATAATCACGGCCTTGTaGATCTGTCAGCTCTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: HSLHTPVHINLPTDLASRIITAL*ICQLFQ Trigger: TTGAAAGAGCTGACAGATGCACAAGGCCGTGATTAT...ACGACTTGCTAGGTCAGTGGGCAGGTTAATATGCACTGGGGTGTGCAGGCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | TTTTCAGTGGGGAGATGGTCTCATGGAGATTTGAACTGTTCAACTTGCCATGAACAAATCATGTCCAGATaGAAACACAGGGCCCTCGGC | + |
|
Preference number: 4 (lower is better) Translates to: FSVGRWSHGDLNCSTCHEQIMSR*KHRALG Trigger: GCCGAGGGCCCTGTGTTTTCATCTGGACATGATTTG...TTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 72 bp | CTTTTATCCTCTGGTTTAGTAGTGAGGGCAAGGCCCTaGCTTTGTGCCCATCAGAGTGGACATACAAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: LLSSGLVVRARP*LCAHQSGHTKR Trigger: TCTCTTTGTATGTCCACTCTGATGGGCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAGGATAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR TCA 90 bp | TACAGATCACACACTGAGAAACCAACATCCAAGTTAGAAAGGCTGGCAATGTTCTCCGGATCAGCATCATaGCCTCAGAACAGGTCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: YRSHTEKPTSKLERLAMFSGSAS*PQNRSE Trigger: TTCAGACCTGTTCTGAGGTCATGATGCTGATCCGGA...GAACATTGCCAGCCTTTCTAACTTGGATGTTGGTTTCTCAGTGTGTGATCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 72 bp | ATCCTCTGGTTTAGTAGTGAGGGCAAGGCCCTTGCTTaGTGCCCATCAGAGTGGACATACAAAGAGAATATT | + |
|
Preference number: 4 (lower is better) Translates to: ILWFSSEGKALA*CPSEWTYKENI Trigger: AATATTCTCTTTGTATGTCCACTCTGATGGGCACAAAGCAAGGGCCTTGCCCTCACTACTAAACCAGAGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CCA 90 bp | AGATCACACACTGAGAAACCAACATCCAAGTTAGAAAGGCTGGCAATGTTCTCTTCTTTGCTATTCTCATaGTCTCTGCCTCCAGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: RSHTEKPTSKLERLAMFSSLLFS*SLPPAV Trigger: AACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGA...AGAGAACATTGCCAGCCTTTCTAACTTGGATGTTGGTTTCTCAGTGTGTGATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| 3UTR CAA 72 bp | AGAAATTTTTCAGTGGGGAGATGGTCTCATGGAGATTaGAACTGTTCAACTTGCCATGAACAACCAGAACGG | + |
|
Preference number: 4 (lower is better) Translates to: RNFSVGRWSHGD*NCSTCHEQPER Trigger: CCGTTCTGGTTGTTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAAATTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CCA 90 bp | AGATCACACACTGAGAAACCAACATCCAAGTTAGAAAGGCTGGCAATGTTCTCTATGGGCTTTCTCTTCTaGATGAAGGCTTCAATTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RSHTEKPTSKLERLAMFSMGFLF*MKASIP Trigger: AGGAATTGAAGCCTTCATCCAGAAGAGAAAGCCCAT...AGAGAACATTGCCAGCCTTTCTAACTTGGATGTTGGTTTCTCAGTGTGTGATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | TACAGATCACACACTGAGAAACCAACATCCAAGTTAGAAAGGCTGGCAATGTTCATTCACTCCAGGAGTTaGAAAAGAAGACTTGTCACT | + |
|
Preference number: 4 (lower is better) Translates to: YRSHTEKPTSKLERLAMFIHSRS*KRRLVT Trigger: AGTGACAAGTCTTCTTTTGCAACTCCTGGAGTGAAT...GAACATTGCCAGCCTTTCTAACTTGGATGTTGGTTTCTCAGTGTGTGATCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR GCA 90 bp | AGATCACACACTGAGAAACCAACATCCAAGTTAGAAAGGCTGGCAATGTTCTCTAGAGGAAATCTTCTTTaGTATTCTCATGGTCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: RSHTEKPTSKLERLAMFSRGNLL*YSHGLC Trigger: GCAGAGACCATGAGAATAGCAAAGAAGATTTCCTCT...AGAGAACATTGCCAGCCTTTCTAACTTGGATGTTGGTTTCTCAGTGTGTGATCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | CTTCACGCTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCAGAGGGGCCCATGGGTaGCGCCTGAGCCAGCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: LHASLDCPLYGQHLTSGSRGAHG*RLSQLG Trigger: GCCCAGCTGGCTCAGGCGCAACCCATGGGCCCCTCT...GGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGCGTGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS GCA 90 bp | GTCACTTGCCACAGCAATATCACAGCTGGCCACGAGCTGGCAGCCTaGAGCTGTGGCCAAGCCATTGACCATGGCAAGGATGGGGACCGG | + |
|
Preference number: 5 (lower is better) Translates to: VTCHSNITAGHELAA*SCGQAIDHGKDGDR Trigger: CCGGTCCCCATCCTTGCCATGGTCAATGGCTTGGCCACAGCTGCAGGCTGCCAGCTCGTGGCCAGCTGTGATATTGCTGTGGCAAGTGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 90 bp | TCCTCTGGTACCACTTTGCTGATAAGGCCATGGCGCAAGGCCTCCTaGGCAGAAATGGGCTCCCCAGTAAAGAGCATCTCCAGGGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: SSGTTLLIRPWRKAS*AEMGSPVKSISRAT Trigger: GGTGGCCCTGGAGATGCTCTTTACTGGGGAGCCCATTTCTGCCCAGGAGGCCTTGCGCCATGGCCTTATCAGCAAAGTGGTACCAGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS GCA 90 bp | TTCCTCCTCCTGGGATTGCTTAAGACAATGTTCCTGATTCCGTCCTaGTGTCGCGTGCTGGTGAGCCTTGGCTCTGACTCCGACCCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: FLLLGLLKTMFLIPS*CRVLVSLGSDSDPA Trigger: TGCGGGGTCGGAGTCAGAGCCAAGGCTCACCAGCACGCGACAGCAGGACGGAATCAGGAACATTGTCTTAAGCAATCCCAGGAGGAGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 90 bp | TCTGCCTCCAGCTGTTCCTCTGGTACCACTTTGCTGATAAGGCCATaGCGCAAGGCCTCCTGGGCAGAAATGGGCTCCCCAGTAAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: SASSCSSGTTLLIRP*RKASWAEMGSPVKS Trigger: GCTCTTTACTGGGGAGCCCATTTCTGCCCAGGAGGCCTTGCGCCATGGCCTTATCAGCAAAGTGGTACCAGAGGAACAGCTGGAGGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | ACCCCAGTGCATATTAACCTGCCCACTGACCTAGCAAGTCGTTCCCTCCCCTGTTCCTGCAAGGCCAGGTaGTCTACCATGGCCTGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: TPVHINLPTDLASRSLPCSCKAR*STMAWE Trigger: CTCCCAGGCCATGGTAGACAACCTGGCCTTGCAGGA...ACAGGGGAGGGAACGACTTGCTAGGTCAGTGGGCAGGTTAATATGCACTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS GCA 90 bp | GACCAGATGGGCTTTCTCTTCTGGATGAAGGCTTCAATTCCTTCCTaGCCATCCTGCAAGGCCAGGTTGTCTACCATGGCCTGGGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: DQMGFLFWMKASIPS*PSCKARLSTMAWEA Trigger: CGCCTCCCAGGCCATGGTAGACAACCTGGCCTTGCAGGATGGGCAGGAAGGAATTGAAGCCTTCATCCAGAAGAGAAAGCCCATCTGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 90 bp | GAAGACTTGTCACTTGCCACAGCAATATCACAGCTGGCCACGAGCTaGCAGCCTGCAGCTGTGGCCAAGCCATTGACCATGGCAAGGATG | + |
|
Preference number: 5 (lower is better) Translates to: EDLSLATAISQLATS*QPAAVAKPLTMARM Trigger: CATCCTTGCCATGGTCAATGGCTTGGCCACAGCTGCAGGCTGCCAGCTCGTGGCCAGCTGTGATATTGCTGTGGCAAGTGACAAGTCTTC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 90 bp | TACCATGGCCTGGGAGGCGAGGAAGTAGGCGGTTCTAAGGTCTTGTaGCAGCTGTTTGTAAAAGGTGGCCTTGCCCAACGCCACCACAGA | + |
|
Preference number: 5 (lower is better) Translates to: YHGLGGEEVGGSKVL*QLFVKGGLAQRHHR Trigger: TCTGTGGTGGCGTTGGGCAAGGCCACCTTTTACAAACAGCTGCCACAAGACCTTAGAACCGCCTACTTCCTCGCCTCCCAGGCCATGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
||
| CDS GCA 90 bp | CTTGCCCAACGCCACCACAGAGCGGCTCAAAGAGGAAATCTTCTTTaGTATTCTCATGGTCTCTGCCTCCAGCTGTTCCTCTGGTACCAC | + |
|
Preference number: 5 (lower is better) Translates to: LAQRHHRAAQRGNLL*YSHGLCLQLFLWYH Trigger: GTGGTACCAGAGGAACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGAAGATTTCCTCTTTGAGCCGCTCTGTGGTGGCGTTGGGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 90 bp | AATCTTCTTTGCTATTCTCATGGTCTCTGCCTCCAGCTGTTCCTCTaGTACCACTTTGCTGATAAGGCCATGGCGCAAGGCCTCCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: NLLCYSHGLCLQLFL*YHFADKAMAQGLLG Trigger: GCCCAGGAGGCCTTGCGCCATGGCCTTATCAGCAAAGTGGTACCAGAGGAACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGAAGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | GCTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTGGGGTGATAATCACGGCCTaGTGCATCTGTCAGCTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: ASLDCPLYGQHLTSGSVGVIITA*CICQLF Trigger: AAAGAGCTGACAGATGCACAAGGCCGTGATTATCAC...CCCAACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS GCA 90 bp | AAGTCCAACATTCACTCCAGGAGTTGCAAAAGAAGACTTGTCACTTaGCACAGCAATATCACAGCTGGCCACGAGCTGGCAGCCTGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: KSNIHSRSCKRRLVT*HSNITAGHELAACS Trigger: GCTGCAGGCTGCCAGCTCGTGGCCAGCTGTGATATTGCTGTGGCAAGTGACAAGTCTTCTTTTGCAACTCCTGGAGTGAATGTTGGACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | CTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTGGGTAAGAAGACTTGTCACTaGCCACAGCAATATCACAGC | + |
|
Preference number: 5 (lower is better) Translates to: LHLTVLCMGSTSLQAPLGKKTCH*PQQYHS Trigger: GCTGTGATATTGCTGTGGCAAGTGACAAGTCTTCTT...ACCCAACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | CTTCACTTGACTGTCCTCTGTATGGGCAGCACCTCACTTCAGGCTCCGTTGGGTCATTCACTCCAGGAGTaGCAAAAGAAGACTTGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: LHLTVLCMGSTSLQAPLGHSLQE*QKKTCH Trigger: GTGACAAGTCTTCTTTTGCAACTCCTGGAGTGAATG...ACCCAACGGAGCCTGAAGTGAGGTGCTGCCCATACAGAGGACAGTCAAGTGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | TTTTCAGTGGGGAGATGGTCTCATGGAGATTTGAACTGTTCAACTTGCCATGAAGCTGTGGCCAAGCCATaGACCATGGCAAGGATGGGG | + |
|
Preference number: 5 (lower is better) Translates to: FSVGRWSHGDLNCSTCHEAVAKP*TMARMG Trigger: CCCCATCCTTGCCATGGTCAATGGCTTGGCCACAGC...TTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | ACTCTCATTGGATGGGGTCTGCTCTGGGTCCTTGCCCTGTTCTGGGCAGCTTTTGTTGCAAAAGAAGACTaGTCACTTGCCACAGCAATA | + |
|
Preference number: 5 (lower is better) Translates to: TLIGWGLLWVLALFWAAFVAKED*SLATAI Trigger: TATTGCTGTGGCAAGTGACAAGTCTTCTTTTGCAAC...AAAAGCTGCCCAGAACAGGGCAAGGACCCAGAGCAGACCCCATCCAATGAGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | CATGAACAACCAGAACGGACTGTGCCTGAAGGACACTGCAGAAGCATGGGGGCGAAGAGGAAATCTTCTTaGCTATTCTCATGGTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: HEQPERTVPEGHCRSMGAKRKSS*LFSWSL Trigger: CAGAGACCATGAGAATAGCAAAGAAGATTTCCTCTT...CGCCCCCATGCTTCTGCAGTGTCCTTCAGGCACAGTCCGTTCTGGTTGTTCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 90 bp | CACTTTCAGCTTCGTGAAGAATGTCACTTCGGAGAGATTTCAGCATaGCCAGTGACAGCGCATTCCTCCTCCTGGGATTGCTTAAGACAA | + |
|
Preference number: 5 (lower is better) Translates to: HFQLREECHFGEISA*PVTAHSSSWDCLRQ Trigger: TTGTCTTAAGCAATCCCAGGAGGAGGAATGCGCTGTCACTGGCCATGCTGAAATCTCTCCGAAGTGACATTCTTCACGAAGCTGAAAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS-3UTR CAA 90 bp | TTTTCAGTGGGGAGATGGTCTCATGGAGATTTGAACTGTTCAACTTGCCATGAAGGCGGTTCTAAGGTCTaGTGGCAGCTGTTTGTAAAA | + |
|
Preference number: 5 (lower is better) Translates to: FSVGRWSHGDLNCSTCHEGGSKV*WQLFVK Trigger: TTTTACAAACAGCTGCCACAAGACCTTAGAACCGCC...TTCATGGCAAGTTGAACAGTTCAAATCTCCATGAGACCATCTCCCCACTGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 72 bp | GCCACGAGCTGGCAGCCTGCAGCTGTGGCCAAGCCATaGACCATGGCAAGGATGGGGACCGGGTGGTTCCGG | + |
|
Preference number: 6 (lower is better) Translates to: ATSWQPAAVAKP*TMARMGTGWFR Trigger: CCGGAACCACCCGGTCCCCATCCTTGCCATGGTCAATGGCTTGGCCACAGCTGCAGGCTGCCAGCTCGTGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 90 bp | GTCTACCATGGCCTGGGAGGCGAGGAAGTAGGCGGTTCTAAGGTCTaGTGGCAGCTGTTTGTAAAAGGTGGCCTTGCCCAACGCCACCAC | + |
|
Preference number: 6 (lower is better) Translates to: VYHGLGGEEVGGSKV*WQLFVKGGLAQRHH Trigger: GTGGTGGCGTTGGGCAAGGCCACCTTTTACAAACAGCTGCCACAAGACCTTAGAACCGCCTACTTCCTCGCCTCCCAGGCCATGGTAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS GCA 72 bp | CACAGCAATATCACAGCTGGCCACGAGCTGGCAGCCTaGAGCTGTGGCCAAGCCATTGACCATGGCAAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: HSNITAGHELAA*SCGQAIDHGKD Trigger: ATCCTTGCCATGGTCAATGGCTTGGCCACAGCTGCAGGCTGCCAGCTCGTGGCCAGCTGTGATATTGCTGTG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 72 bp | GCCAAGCCATTGACCATGGCAAGGATGGGGACCGGGTaGTTCCGGATCAGCATCATGACCTCAGAACAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: AKPLTMARMGTG*FRISIMTSEQV Trigger: GACCTGTTCTGAGGTCATGATGCTGATCCGGAACCACCCGGTCCCCATCCTTGCCATGGTCAATGGCTTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 72 bp | TCACTTGCCACAGCAATATCACAGCTGGCCACGAGCTaGCAGCCTGCAGCTGTGGCCAAGCCATTGACCATG | + |
|
Preference number: 6 (lower is better) Translates to: SLATAISQLATS*QPAAVAKPLTM Trigger: CATGGTCAATGGCTTGGCCACAGCTGCAGGCTGCCAGCTCGTGGCCAGCTGTGATATTGCTGTGGCAAGTGA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 72 bp | ACCACTTTGCTGATAAGGCCATGGCGCAAGGCCTCCTaGGCAGAAATGGGCTCCCCAGTAAAGAGCATCTCC | + |
|
Preference number: 6 (lower is better) Translates to: TTLLIRPWRKAS*AEMGSPVKSIS Trigger: GGAGATGCTCTTTACTGGGGAGCCCATTTCTGCCCAGGAGGCCTTGCGCCATGGCCTTATCAGCAAAGTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 72 bp | CTGGGAGGCGAGGAAGTAGGCGGTTCTAAGGTCTTGTaGCAGCTGTTTGTAAAAGGTGGCCTTGCCCAACGC | + |
|
Preference number: 6 (lower is better) Translates to: LGGEEVGGSKVL*QLFVKGGLAQR Trigger: GCGTTGGGCAAGGCCACCTTTTACAAACAGCTGCCACAAGACCTTAGAACCGCCTACTTCCTCGCCTCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 72 bp | GGCCTGGGAGGCGAGGAAGTAGGCGGTTCTAAGGTCTaGTGGCAGCTGTTTGTAAAAGGTGGCCTTGCCCAA | + |
|
Preference number: 6 (lower is better) Translates to: GLGGEEVGGSKV*WQLFVKGGLAQ Trigger: TTGGGCAAGGCCACCTTTTACAAACAGCTGCCACAAGACCTTAGAACCGCCTACTTCCTCGCCTCCCAGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS GCA 72 bp | CTGGGATTGCTTAAGACAATGTTCCTGATTCCGTCCTaGTGTCGCGTGCTGGTGAGCCTTGGCTCTGACTCC | + |
|
Preference number: 6 (lower is better) Translates to: LGLLKTMFLIPS*CRVLVSLGSDS Trigger: GGAGTCAGAGCCAAGGCTCACCAGCACGCGACAGCAGGACGGAATCAGGAACATTGTCTTAAGCAATCCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS TCA 72 bp | CAAGGATGGGGACCGGGTGGTTCCGGATCAGCATCATaGCCTCAGAACAGGTCTGAAATACCTCAGCGTGAT | + |
|
Preference number: 6 (lower is better) Translates to: QGWGPGGSGSAS*PQNRSEIPQRD Trigger: ATCACGCTGAGGTATTTCAGACCTGTTCTGAGGTCATGATGCTGATCCGGAACCACCCGGTCCCCATCCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CCA 72 bp | TGCTATTCTCATGGTCTCTGCCTCCAGCTGTTCCTCTaGTACCACTTTGCTGATAAGGCCATGGCGCAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: CYSHGLCLQLFL*YHFADKAMAQG Trigger: GCCTTGCGCCATGGCCTTATCAGCAAAGTGGTACCAGAGGAACAGCTGGAGGCAGAGACCATGAGAATAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 90 bp | CCTTGCCCAACGCCACCACAGAGCGGCTCAAAGAGGAAATCTTCTTaGCTATTCTCATGGTCTCTGCCTCCAGCTGTTCCTCTGGTACCA | + |
|
Preference number: 6 (lower is better) Translates to: PCPTPPQSGSKRKSS*LFSWSLPPAVPLVP Trigger: TGGTACCAGAGGAACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGAAGATTTCCTCTTTGAGCCGCTCTGTGGTGGCGTTGGGCAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
||
| CDS GCA 72 bp | CGCCACCACAGAGCGGCTCAAAGAGGAAATCTTCTTTaGTATTCTCATGGTCTCTGCCTCCAGCTGTTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: RHHRAAQRGNLL*YSHGLCLQLFL Trigger: GAGGAACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGAAGATTTCCTCTTTGAGCCGCTCTGTGGTGGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
||
| CDS CCA 72 bp | CTTCGTGAAGAATGTCACTTCGGAGAGATTTCAGCATaGCCAGTGACAGCGCATTCCTCCTCCTGGGATTGC | + |
|
Preference number: 6 (lower is better) Translates to: LREECHFGEISA*PVTAHSSSWDC Trigger: GCAATCCCAGGAGGAGGAATGCGCTGTCACTGGCCATGCTGAAATCTCTCCGAAGTGACATTCTTCACGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 90 bp | AAAGTCCAACATTCACTCCAGGAGTTGCAAAAGAAGACTTGTCACTaGCCACAGCAATATCACAGCTGGCCACGAGCTGGCAGCCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: KVQHSLQELQKKTCH*PQQYHSWPRAGSLQ Trigger: CTGCAGGCTGCCAGCTCGTGGCCAGCTGTGATATTGCTGTGGCAAGTGACAAGTCTTCTTTTGCAACTCCTGGAGTGAATGTTGGACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 72 bp | ACGCCACCACAGAGCGGCTCAAAGAGGAAATCTTCTTaGCTATTCTCATGGTCTCTGCCTCCAGCTGTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: TPPQSGSKRKSS*LFSWSLPPAVP Trigger: AGGAACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGAAGATTTCCTCTTTGAGCCGCTCTGTGGTGGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
||
| CDS CCA 72 bp | AGCGGCTCAAAGAGGAAATCTTCTTTGCTATTCTCATaGTCTCTGCCTCCAGCTGTTCCTCTGGTACCACTT | + |
|
Preference number: 6 (lower is better) Translates to: SGSKRKSSLLFS*SLPPAVPLVPL Trigger: AAGTGGTACCAGAGGAACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGAAGATTTCCTCTTTGAGCCGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
||
| CDS GCA 72 bp | GGTGGAGCAGAAAAGTCCAACATTCACTCCAGGAGTTaGAAAAGAAGACTTGTCACTTGCCACAGCAATATC | + |
|
Preference number: 6 (lower is better) Translates to: GGAEKSNIHSRS*KRRLVTCHSNI Trigger: GATATTGCTGTGGCAAGTGACAAGTCTTCTTTTGCAACTCCTGGAGTGAATGTTGGACTTTTCTGCTCCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS GCA 72 bp | CAAAGAGGAAATCTTCTTTGCTATTCTCATGGTCTCTaGCTCCAGCTGTTCCTCTGGTACCACTTTGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: QRGNLLCYSHGL*LQLFLWYHFAD Trigger: ATCAGCAAAGTGGTACCAGAGGAACAGCTGGAGGCAGAGACCATGAGAATAGCAAAGAAGATTTCCTCTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 72 bp | ACAGGTCTGAAATACCTCAGCGTGATAATCACGGCCTaGTGCATCTGTCAGCTCTTTCAAATCATGTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: TGLKYLSVIITA*CICQLFQIMSR Trigger: TCTGGACATGATTTGAAAGAGCTGACAGATGCACAAGGCCGTGATTATCACGCTGAGGTATTTCAGACCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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| CDS CAA 72 bp | GGGTGGAGCAGAAAAGTCCAACATTCACTCCAGGAGTaGCAAAAGAAGACTTGTCACTTGCCACAGCAATAT | + |
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Preference number: 6 (lower is better) Translates to: GWSRKVQHSLQE*QKKTCHLPQQY Trigger: ATATTGCTGTGGCAAGTGACAAGTCTTCTTTTGCAACTCCTGGAGTGAATGTTGGACTTTTCTGCTCCACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042658.5 |
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