RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ECE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057530

Ensembl transcript IDs: ENSMUST00000102518.10, ENSMUST00000151110.4

Found 205 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTTGGGCTTCCCATGGTTGGACTCCAGCGACAGGACAGGTAAGCTaGGAAGGTCACGCCCATAACCAGGCCCTTCAGCTGCTCACCCCC +
Preference number: 1 (lower is better)
Translates to: CWASHGWTPATGQVS*EGHAHNQALQLLTP
Trigger: GGGGGTGAGCAGCTGAAGGGCCTGGTTATGGGCGTGACCTTCTCAGCTTACCTGTCCTGTCGCTGGAGTCCAACCATGGGAAGCCCAACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 90 bp ATCTTGGCTTCGAGTGGTGAGGCTCCATCCATCTTAGGCTTAGGATaGCTGCATACTCTCCAGAGTGGGGAAGGGGCCCTAGGCCGAGGG +
Preference number: 1 (lower is better)
Translates to: ILASSGEAPSILGLG*LHTLQSGEGALGRG
Trigger: CCCTCGGCCTAGGGCCCCTTCCCCACTCTGGAGAGTATGCAGCCATCCTAAGCCTAAGATGGATGGAGCCTCACCACTCGAAGCCAAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 90 bp GGTCACGCCCATAACCAGGCCCTTCAGCTGCTCACCCCCTCTGCCTaGGCCCCTACATCTCCTGACTGCACCGGTGACTATAGAAGTAAT +
Preference number: 1 (lower is better)
Translates to: GHAHNQALQLLTPSA*APTSPDCTGDYRSN
Trigger: ATTACTTCTATAGTCACCGGTGCAGTCAGGAGATGTAGGGGCCCAGGCAGAGGGGGTGAGCAGCTGAAGGGCCTGGTTATGGGCGTGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR TCA 90 bp TCCCTAACCAGTCTGCGTCTTCCTGCCTTGGCTCCCTGCACACCCTaGGCAATGTCCATATGGCTGAACCCAGTTCAGGACCCCGCTTCT +
Preference number: 1 (lower is better)
Translates to: SLTSLRLPALAPCTP*AMSIWLNPVQDPAS
Trigger: AGAAGCGGGGTCCTGAACTGGGTTCAGCCATATGGACATTGCTCAGGGTGTGCAGGGAGCCAAGGCAGGAAGACGCAGACTGGTTAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 90 bp GGCACTACTAGGCTTCTCCCACACATATCACAAGAGCTTGCTCCCTaGAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGGGAGCC +
Preference number: 1 (lower is better)
Translates to: GTTRLLPHISQELAP*RSHENCGERHLVGA
Trigger: GGCTCCCACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTGTGATATGTGTGGGAGAAGCCTAGTAGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 90 bp CCGAAGAGCCGAGACCTCGAATGTGTTTACAGGGACCAAGAACCTTaGCAGGTGCCTGCTTGTAGTTCCCATCCTAGCAAGCGGGGCCGA +
Preference number: 1 (lower is better)
Translates to: PKSRDLECVYRDQEP*QVPACSSHPSKRGR
Trigger: TCGGCCCCGCTTGCTAGGATGGGAACTACAAGCAGGCACCTGGCAAGGTTCTTGGTCCCTGTAAACACATTCGAGGTCTCGGCTCTTCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 90 bp GTGATGCTGTGGGTGGATGACTTTCTGCCATTCCCTGGAGCCCAATaGGGCTGGGAACATTCCAGTCTTGGCCTGCTCTGGCTACAGCAT +
Preference number: 1 (lower is better)
Translates to: VMLWVDDFLPFPGAQ*GWEHSSLGLLWLQH
Trigger: ATGCTGTAGCCAGAGCAGGCCAAGACTGGAATGTTCCCAGCCCCATTGGGCTCCAGGGAATGGCAGAAAGTCATCCACCCACAGCATCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR TCA 90 bp AACTGCGGTGAGCGCCACCTAGTGGGAGCCCACATATCTACTACGTaGTGCTGTGGGTGGATGACTTTCTGCCATTCCCTGGAGCCCAAT +
Preference number: 1 (lower is better)
Translates to: NCGERHLVGAHISTT*CCGWMTFCHSLEPN
Trigger: ATTGGGCTCCAGGGAATGGCAGAAAGTCATCCACCCACAGCATCACGTAGTAGATATGTGGGCTCCCACTAGGTGGCGCTCACCGCAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 90 bp CTTCAGCTGCTCACCCCCTCTGCCTGGGCCCCTACATCTCCTGACTaGACCGGTGACTATAGAAGTAATTACACCAGCAATGGGCTAAAG +
Preference number: 1 (lower is better)
Translates to: LQLLTPSAWAPTSPD*TGDYRSNYTSNGLK
Trigger: CTTTAGCCCATTGCTGGTGTAATTACTTCTATAGTCACCGGTGCAGTCAGGAGATGTAGGGGCCCAGGCAGAGGGGGTGAGCAGCTGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 90 bp GTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTaGCTTGGCTCCCTGCACACCCTGAGCAATGTCCATATGGCTGAA +
Preference number: 1 (lower is better)
Translates to: VLLLCPSIPNQSASS*LGSLHTLSNVHMAE
Trigger: TTCAGCCATATGGACATTGCTCAGGGTGTGCAGGGAGCCAAGGCAGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 90 bp AAATATATCTTTAAAGCATTTGACACAGTGGTATTGTGGTGTATCTaGCATTGGATGTGGGCAGGGGGCCATGTCCCACTGCCATTGTCA +
Preference number: 1 (lower is better)
Translates to: KYIFKAFDTVVLWCI*HWMWAGGHVPLPLS
Trigger: TGACAATGGCAGTGGGACATGGCCCCCTGCCCACATCCAATGCCAGATACACCACAATACCACTGTGTCAAATGCTTTAAAGATATATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR TCA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCCTGCCATTGTCAGTGTaGGGCCCAGGGCTGGCAAGC +
Preference number: 2 (lower is better)
Translates to: PGLREGVFLRADALPATALPLSV*GPGLAS
Trigger: GCTTGCCAGCCCTGGGCCTCACACTGACAATGGCAG...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCTGCGTCTTCCTGCCTTaGCTCCCTGCACACCCTGAG +
Preference number: 2 (lower is better)
Translates to: PGLREGVFLRADALPATACVFLP*LPAHPE
Trigger: CTCAGGGTGTGCAGGGAGCCAAGGCAGGAAGACGCA...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR GCA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACAGCTGCTCACCCCCTCTaGCTGGGCCCCTACATCTCC +
Preference number: 2 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTAAHPL*LGPYIS
Trigger: GGAGATGTAGGGGCCCAGGCAGAGGGGGTGAGCAGC...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp TCCCCAGCTCCAAACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTTGAGAGGAGGGTGGCAACATaGCTCCGCTGGGAGCTAGCT +
Preference number: 2 (lower is better)
Translates to: SPAPNPMSLCLQGNSGLERRVAT*LRWELA
Trigger: AGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCT...CTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGTTTGGAGCTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATCTCACCCCCTCTGCCTaGGCCCCTACATCTCCTGAC +
Preference number: 2 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNLTPSA*APTSPD
Trigger: GTCAGGAGATGTAGGGGCCCAGGCAGAGGGGGTGAG...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 90 bp CAGCTCCAAACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTaGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACC +
Preference number: 2 (lower is better)
Translates to: QLQTPCPCACRETPG*REGVFLRADALPAT
Trigger: GGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGTTTGGAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR TCA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACAGGCAAGCCACCAGCTTaGCACATCCAAAGGCCCGCC +
Preference number: 2 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTGKPPA*HIQRPA
Trigger: GGCGGGCCTTTGGATGTGTCAAGCTGGTGGCTTGCC...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR TCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCGCTCCCTGCACACCCTaGGCAATGTCCATATGGCTG +
Preference number: 2 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRAPCTP*AMSIWL
Trigger: CAGCCATATGGACATTGCTCAGGGTGTGCAGGGAGC...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCGACGTCTATCTGGAATaGCTGTCCTGTAGGCAGGTT +
Preference number: 2 (lower is better)
Translates to: PGLREGVFLRADALPATADVYLE*LSCRQV
Trigger: AACCTGCCTACAGGACAGCCATTCCAGATAGACGTC...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp TCCCCAGCTCCAAACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTTGAGTTCCCTGGAGCCCAATaGGGCTGGGAACATTCCAGT +
Preference number: 2 (lower is better)
Translates to: SPAPNPMSLCLQGNSGLEFPGAQ*GWEHSS
Trigger: ACTGGAATGTTCCCAGCCCCATTGGGCTCCAGGGAA...CTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGTTTGGAGCTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 90 bp ACGCACCGGTGTCCAGGATGCCGGAGCTTCACAGGGGGTCAAATCTaGGCTTCGAGTGGTGAGGCTCCATCCATCTTAGGCTTAGGATGG +
Preference number: 2 (lower is better)
Translates to: THRCPGCRSFTGGQI*ASSGEAPSILGLGW
Trigger: CCATCCTAAGCCTAAGATGGATGGAGCCTCACCACTCGAAGCCAAGATTTGACCCCCTGTGAAGCTCCGGCATCCTGGACACCGGTGCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 90 bp GACGGGATAGAAAGGGCAGATGATCCAGACCCAGAAGGTCCCCCTTaGTGTGGCAGGGCACGGCTCCAGCACCTTCCTGCCTTCTTATGT +
Preference number: 2 (lower is better)
Translates to: DGIERADDPDPEGPP*CGRARLQHLPAFLC
Trigger: ACATAAGAAGGCAGGAAGGTGCTGGAGCCGTGCCCTGCCACACAAAGGGGGACCTTCTGGGTCTGGATCATCTGCCCTTTCTATCCCGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCATCTGGCATTGGATGTaGGCAGGGGGCCATGTCCCA +
Preference number: 2 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSIWHWM*AGGHVP
Trigger: TGGGACATGGCCCCCTGCCCACATCCAATGCCAGAT...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATACAACAGGGTGCATCTaGTGGGGTGTGGGTTCTCAG +
Preference number: 2 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNTTGCI*WGVGSQ
Trigger: CTGAGAACCCACACCCCACCAGATGCACCCTGTTGT...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATACAGGCTACAGAGCTTaGAGGGAGAACTGGGCTGAG +
Preference number: 2 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNTGYRA*RENWAE
Trigger: CTCAGCCCAGTTCTCCCTCCAAGCTCTGTAGCCTGT...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTGCCTTCTCCACAGCCTaGGGTTCCCAGGGGGTAAAT +
Preference number: 2 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPAFSTA*GSQGVN
Trigger: ATTTACCCCCTGGGAACCCCAGGCTGTGGAGAAGGC...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCGCCTCAACTATCACTTaGGTATCAACCCATCCTTGT +
Preference number: 2 (lower is better)
Translates to: PGLREGVFLRADALPATAASTIT*VSTHPC
Trigger: ACAAGGATGGGTTGATACCCAAGTGATAGTTGAGGC...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTGTACCCTGGGGCTTCTaGGAATGGGGCTATGGTGTT +
Preference number: 2 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPVPWGF*EWGYGV
Trigger: AACACCATAGCCCCATTCCCAGAAGCCCCAGGGTAC...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR TCA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGCTACAAGGACTGAATTaGTTCAATGTGCGTGCCACG +
Preference number: 2 (lower is better)
Translates to: QELAPCRSHENCGERHLVLQGLN*FNVRAT
Trigger: CGTGGCACGCACATTGAATCAATTCAGTCCTTGTAG...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp GTGTTGGCTTCTAGTCAGGACACTTGGGGGCTCCACTGGGAAAGCAAGCCAAATAGTGCTCGCTCAAACTaGCAGCCTTCTCCACAGCCT +
Preference number: 2 (lower is better)
Translates to: VLASSQDTWGLHWESKPNSARSN*QPSPQP
Trigger: AGGCTGTGGAGAAGGCTGCCAGTTTGAGCGAGCACT...ATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAGTGTCCTGACTAGAAGCCAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR GCA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACATCAGGATGTCAGAATTaGTACAGAGAGGCAACGGGT +
Preference number: 2 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTSGCQN*YREATG
Trigger: ACCCGTTGCCTCTCTGTAGCAATTCTGACATCCTGA...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CCA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTGACACAGTGGTATTGTaGTGTATCTGGCATTGGATG +
Preference number: 2 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPDTVVL*CIWHWM
Trigger: CATCCAATGCCAGATACACCACAATACCACTGTGTC...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp GCCCTAGGCCGAGGGGCTGGGAGGAGGGTGGCAACATaGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCCCTT +
Preference number: 3 (lower is better)
Translates to: ALGRGAGRRVAT*LRWELAAAPSL
Trigger: AAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCCCCTCGGCCTAGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 72 bp CACTTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTaGCTCCTAGTGGGGCTCAGGGTCTGCAGCCTGGGG +
Preference number: 3 (lower is better)
Translates to: HLGAPLGKQAKC*LLVGLRVCSLG
Trigger: CCCCAGGCTGCAGACCCTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 72 bp GAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTaGAGCTCCTTCCCTTTTTCTGTCCGTGCTCTCTGC +
Preference number: 3 (lower is better)
Translates to: EEGGNMAPLGAS*SSFPFSVRALC
Trigger: GCAGAGAGCACGGACAGAAAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp GAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTaGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTC +
Preference number: 3 (lower is better)
Translates to: EWLSCRQVGVVP*GFWEWGYGVGF
Trigger: GAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp GGTCAGCAGCTCCTGACACTGGACGTCTATCTGGAATaGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGG +
Preference number: 3 (lower is better)
Translates to: GQQLLTLDVYLE*LSCRQVGVVPW
Trigger: CCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCAGATAGACGTCCAGTGTCAGGAGCTGCTGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CAA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTTGTCCTGTAGGCAGGTaGGGGTGGTACCCTGGGGCT +
Preference number: 3 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPCPVGR*GWYPGA
Trigger: AGCCCCAGGGTACCACCCCAACCTGCCTACAGGACA...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp TGGGTGGATGACTTTCTGCCATTCCCTGGAGCCCAATaGGGCTGGGAACATTCCAGTCTTGGCCTGCTCTGG +
Preference number: 3 (lower is better)
Translates to: WVDDFLPFPGAQ*GWEHSSLGLLW
Trigger: CCAGAGCAGGCCAAGACTGGAATGTTCCCAGCCCCATTGGGCTCCAGGGAATGGCAGAAAGTCATCCACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 72 bp TCACAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTaGGGTGAGCGCCACCTAGTGGGAGCCCACATATCT +
Preference number: 3 (lower is better)
Translates to: SQELAPCRSHEN*GERHLVGAHIS
Trigger: AGATATGTGGGCTCCCACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 72 bp TTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTaGCTTGGCTCCCTGCACACCCTGAGCAATGTCCAT +
Preference number: 3 (lower is better)
Translates to: LCPSIPNQSASS*LGSLHTLSNVH
Trigger: ATGGACATTGCTCAGGGTGTGCAGGGAGCCAAGGCAGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp GATGACTTTCTGCCATTCCCTGGAGCCCAATGGGGCTaGGAACATTCCAGTCTTGGCCTGCTCTGGCTACAG +
Preference number: 3 (lower is better)
Translates to: DDFLPFPGAQWG*EHSSLGLLWLQ
Trigger: CTGTAGCCAGAGCAGGCCAAGACTGGAATGTTCCCAGCCCCATTGGGCTCCAGGGAATGGCAGAAAGTCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CAA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACAATCAACCCATCCTTGTaGGGCTTCCCATGGTTGGAC +
Preference number: 3 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTINPSL*GFPWLD
Trigger: GTCCAACCATGGGAAGCCCAACAAGGATGGGTTGAT...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR TCA 72 bp GAGCCCACATATCTACTACGTGATGCTGTGGGTGGATaGCTTTCTGCCATTCCCTGGAGCCCAATGGGGCTG +
Preference number: 3 (lower is better)
Translates to: EPTYLLRDAVGG*LSAIPWSPMGL
Trigger: CAGCCCCATTGGGCTCCAGGGAATGGCAGAAAGTCATCCACCCACAGCATCACGTAGTAGATATGTGGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR TCA 72 bp GAGCGCCACCTAGTGGGAGCCCACATATCTACTACGTaGTGCTGTGGGTGGATGACTTTCTGCCATTCCCTG +
Preference number: 3 (lower is better)
Translates to: ERHLVGAHISTT*CCGWMTFCHSL
Trigger: CAGGGAATGGCAGAAAGTCATCCACCCACAGCATCACGTAGTAGATATGTGGGCTCCCACTAGGTGGCGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR TCA 72 bp TGGCTCCCTGCACACCCTGAGCAATGTCCATATGGCTaGACCCAGTTCAGGACCCCGCTTCTAGATACCAGT +
Preference number: 3 (lower is better)
Translates to: WLPAHPEQCPYG*TQFRTPLLDTS
Trigger: ACTGGTATCTAGAAGCGGGGTCCTGAACTGGGTTCAGCCATATGGACATTGCTCAGGGTGTGCAGGGAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 72 bp AGGCTTCTCCCACACATATCACAAGAGCTTGCTCCCTaGAGGAGTCATGAGAACTGCGGTGAGCGCCACCTA +
Preference number: 3 (lower is better)
Translates to: RLLPHISQELAP*RSHENCGERHL
Trigger: TAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTGTGATATGTGTGGGAGAAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp AATGGGGCTATGGTGTTGGCTTCTAGTCAGGACACTTaGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCC +
Preference number: 3 (lower is better)
Translates to: NGAMVLASSQDT*GLHWESKPNAA
Trigger: GGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAGTGTCCTGACTAGAAGCCAACACCATAGCCCCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CAA 90 bp AGGTCCCCCTTTGTGTGGCAGGGCACGGCTCCAGCACCTTCCTGCCTTCTTATGTTTGACACAGTGGTATaGTGGTGTATCTGGCATTGG +
Preference number: 3 (lower is better)
Translates to: RSPFVWQGTAPAPSCLLMFDTVV*WCIWHW
Trigger: CCAATGCCAGATACACCACAATACCACTGTGTCAAA...CATAAGAAGGCAGGAAGGTGCTGGAGCCGTGCCCTGCCACACAAAGGGGGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 72 bp CTCACCCCCTCTGCCTGGGCCCCTACATCTCCTGACTaGACCGGTGACTATAGAAGTAATTACACCAGCAAT +
Preference number: 3 (lower is better)
Translates to: LTPSAWAPTSPD*TGDYRSNYTSN
Trigger: ATTGCTGGTGTAATTACTTCTATAGTCACCGGTGCAGTCAGGAGATGTAGGGGCCCAGGCAGAGGGGGTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp CCTAGTGGGAGCCCACATATCTACTACGTGATGCTGTaGGTGGATGACTTTCTGCCATTCCCTGGAGCCCAA +
Preference number: 3 (lower is better)
Translates to: PSGSPHIYYVML*VDDFLPFPGAQ
Trigger: TTGGGCTCCAGGGAATGGCAGAAAGTCATCCACCCACAGCATCACGTAGTAGATATGTGGGCTCCCACTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CAA 90 bp AGGTCCCCCTTTGTGTGGCAGGGCACGGCTCCAGCACCTTCCTGCCTTCTTATGTTAGTGGGGTTTCCTTaGTCCACAGGTTGTTTAGAA +
Preference number: 3 (lower is better)
Translates to: RSPFVWQGTAPAPSCLLMLVGFP*STGCLE
Trigger: TTCTAAACAACCTGTGGACAAAGGAAACCCCACTAA...CATAAGAAGGCAGGAAGGTGCTGGAGCCGTGCCCTGCCACACAAAGGGGGACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR GCA 72 bp CGAGACCTCGAATGTGTTTACAGGGACCAAGAACCTTaGCAGGTGCCTGCTTGTAGTTCCCATCCTAGCAAG +
Preference number: 3 (lower is better)
Translates to: RDLECVYRDQEP*QVPACSSHPSK
Trigger: CTTGCTAGGATGGGAACTACAAGCAGGCACCTGGCAAGGTTCTTGGTCCCTGTAAACACATTCGAGGTCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR-3UTR CAA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTTGCCTCAACTATCACTaGGGTATCAACCCATCCTTG +
Preference number: 3 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPCLNYH*GINPSL
Trigger: CAAGGATGGGTTGATACCCAAGTGATAGTTGAGGCA...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp TCATTACTCTGCCTTTGTGCTGCCTCAACTATCACTTaGGTATCAACCCATCCTTGTTGGGCTTCCCATGGT +
Preference number: 3 (lower is better)
Translates to: SLLCLCAASTIT*VSTHPCWASHG
Trigger: ACCATGGGAAGCCCAACAAGGATGGGTTGATACCCAAGTGATAGTTGAGGCAGCACAAAGGCAGAGTAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CCA 72 bp AAATATATCTTTAAAGCATTTGACACAGTGGTATTGTaGTGTATCTGGCATTGGATGTGGGCAGGGGGCCAT +
Preference number: 3 (lower is better)
Translates to: KYIFKAFDTVVL*CIWHWMWAGGH
Trigger: ATGGCCCCCTGCCCACATCCAATGCCAGATACACCACAATACCACTGTGTCAAATGCTTTAAAGATATATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGCTGGGAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCGGCCGCTCCGGGAGCTaGGGAAGTTCACCTGTAGGC +
Preference number: 4 (lower is better)
Translates to: GWEEGGNMAPLGASCSSFGRSGS*GSSPVG
Trigger: GCCTACAGGTGAACTTCCGCAGCTCCCGGAGCGGCC...GAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp TCCCCAGCTCCAAACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTTGAGTGGAGAGCGAGCCGATaGCCCGGAAGCGAGAGGGGC +
Preference number: 4 (lower is better)
Translates to: SPAPNPMSLCLQGNSGLEWRASR*PGSERG
Trigger: GCCCCTCTCGCTTCCGGGTCATCGGCTCGCTCTCCA...CTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGTTTGGAGCTGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCCTGGATGCCCAGGGCTaGCAGGCAGGCCACCAACCC +
Preference number: 4 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRLDAQG*QAGHQP
Trigger: GGGTTGGTGGCCTGCCTGGCAGCCCTGGGCATCCAG...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCGCTGCCCAGCACCTCTaGCCGCTCCGGGAGCTGCGG +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSAAQHL*PLRELR
Trigger: CCGCAGCTCCCGGAGCGGCCAGAGGTGCTGGGCAGC...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp GGCTGGGAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCGATAGAGCTGGTCACTaGGACACAGGCCTCCGTCAG +
Preference number: 4 (lower is better)
Translates to: GWEEGGNMAPLGASCSSFDRAGH*DTGLRQ
Trigger: CTGACGGAGGCCTGTGTCTCAGTGACCAGCTCTATC...GAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCGCACGGGGTTGGCCTTaGTCCAGCCCCCGCAGGCGT +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSARGWP*SSPRRR
Trigger: ACGCCTGCGGGGGCTGGATCAAGGCCAACCCCGTGC...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATGAAGGTTCCCCAGCGTaGGTGGCCATCGGGCACGGG +
Preference number: 4 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNEGSPA*VAIGHG
Trigger: CCCGTGCCCGATGGCCACTCACGCTGGGGAACCTTC...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp CTTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGGTTCCCCAGCGTGAGTaGCCATCGGGCACGGGGTTG +
Preference number: 4 (lower is better)
Translates to: LGGSTGKASQMLPPSGAQVPQRE*PSGTGL
Trigger: CAACCCCGTGCCCGATGGCCACTCACGCTGGGGAAC...CTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GAGAAGGTCACGCCCATAACCAGGCCCTTCAGCTGCTCACCCCCTCTGCCTGGGTCCCTGCGCTTCTCCTaGGGGATGGTGATGTTGGCC +
Preference number: 4 (lower is better)
Translates to: EKVTPITRPFSCSPPLPGSLRFS*GMVMLA
Trigger: GGCCAACATCACCATCCCCCAGGAGAAGCGCAGGGA...CCCAGGCAGAGGGGGTGAGCAGCTGAAGGGCCTGGTTATGGGCGTGACCTTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATCCCCGCAGGCGTAGCTaGAGAAGTCCTGGCACGGGT +
Preference number: 4 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNPRRRS*RSPGTG
Trigger: ACCCGTGCCAGGACTTCTTCAGCTACGCCTGCGGGG...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp TCCCCAGCTCCAAACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTTGAGTCTCCTGGGGGATGGTaGTGTTGGCCAGCGCCGTCT +
Preference number: 4 (lower is better)
Translates to: SPAPNPMSLCLQGNSGLESPGGW*CWPAPS
Trigger: AGACGGCGCTGGCCAACATCACCATCCCCCAGGAGA...CTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGTTTGGAGCTGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATAGAGCTGGTTGCTGGTaGGACCCAGGGTGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNRAGCW*DPGWAA
Trigger: CGCTGCCCACCCTGGGTCTCACCAGCAACCAGCTCT...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACACACCGAGGTCCGAGCTaGCCAGCACCTCTGGCCGCT +
Preference number: 4 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTHRGPS*PAPLAA
Trigger: AGCGGCCAGAGGTGCTGGGCAGCTCGGACCTCGGTG...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCACCATGCACTCCGTCTaGTGCTTGAACGCCTCCACG +
Preference number: 4 (lower is better)
Translates to: PGLREGVFLRADALPATATMHSV*CLNAST
Trigger: CGTGGAGGCGTTCAAGCAGCAGACGGAGTGCATGGT...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GAGAAGGTCACGCCCATAACCAGGCCCTTCAGCTGCTCACCCCCTCTGCCTGGGCCTCTTCGTCCAGCGTaGCCCGCTTGTAGGTTGACA +
Preference number: 4 (lower is better)
Translates to: EKVTPITRPFSCSPPLPGPLRPA*PACRLT
Trigger: TGTCAACCTACAAGCGGGCCACGCTGGACGAAGAGG...CCCAGGCAGAGGGGGTGAGCAGCTGAAGGGCCTGGTTATGGGCGTGACCTTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGGCATCTGTGGCCGGATaGCATCCTCGTCCCCACCGC +
Preference number: 4 (lower is better)
Translates to: QELAPCRSHENCGERHLVASVAG*HPRPHR
Trigger: GCGGTGGGGACGAGGATGCCATCCGGCCACAGATGC...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp TGTCAGTGTGAGGCCCAGGGCTGGCAAGCCACCAGCTaGACACATCCAAAGGCCCGCCTAGCATCACGCACC +
Preference number: 4 (lower is better)
Translates to: CQCEAQGWQATS*THPKARLASRT
Trigger: GGTGCGTGATGCTAGGCGGGCCTTTGGATGTGTCAAGCTGGTGGCTTGCCAGCCCTGGGCCTCACACTGACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp GAAAGGGCAGATGATCCAGACCCAGAAGGTCCCCCTTaGTGTGGCAGGGCACGGCTCCAGCACCTTCCTGCC +
Preference number: 4 (lower is better)
Translates to: ERADDPDPEGPP*CGRARLQHLPA
Trigger: GGCAGGAAGGTGCTGGAGCCGTGCCCTGCCACACAAAGGGGGACCTTCTGGGTCTGGATCATCTGCCCTTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp CTTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGTGGCCCAGGGTCCTGTaGTATTCCAGCCTCCCAGCT +
Preference number: 4 (lower is better)
Translates to: LGGSTGKASQMLPPSGAQWPRVL*YSSLPA
Trigger: AGCTGGGAGGCTGGAATATCACAGGACCCTGGGCCA...CTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGCTGGGAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCAAATCCAGGATCTGCTaGATCTGTGGCCGGATGGCA +
Preference number: 4 (lower is better)
Translates to: GWEEGGNMAPLGASCSSFKSRIC*ICGRMA
Trigger: TGCCATCCGGCCACAGATGCAGCAGATCCTGGATTT...GAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGCTGGGAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCAGTAAGCGTTCACCATaGGCGGCGTCATACTCCACT +
Preference number: 4 (lower is better)
Translates to: GWEEGGNMAPLGASCSSFSKRSP*AASYST
Trigger: AGTGGAGTATGACGCCGCCCATGGTGAACGCTTACT...GAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp CTTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGGTGATGAGGCCTTCGTaGGAGCTCTCAGGTGTGCGG +
Preference number: 4 (lower is better)
Translates to: LGGSTGKASQMLPPSGAQVMRPS*ELSGVR
Trigger: CCGCACACCTGAGAGCTCCCACGAAGGCCTCATCAC...CTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp TCCCCAGCTCCAAACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTTGAGGTTCCCAGAGGTTGCTaGAGGTTCCCCAGCGTGAGT +
Preference number: 4 (lower is better)
Translates to: SPAPNPMSLCLQGNSGLEVPRGC*RFPSVS
Trigger: ACTCACGCTGGGGAACCTTCAGCAACCTCTGGGAAC...CTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGTTTGGAGCTGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGCCAGTTGATGGCAGGTaGCAAGGTCTGCAGCTCGGC +
Preference number: 4 (lower is better)
Translates to: QELAPCRSHENCGERHLVPVDGR*QGLQLG
Trigger: GCCGAGCTGCAGACCTTGGCACCTGCCATCAACTGG...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGATCGCCCTCGGAGAGTaGGTCCACCAGATCCTCTTC +
Preference number: 4 (lower is better)
Translates to: QELAPCRSHENCGERHLVIALGE*VHQILF
Trigger: GAAGAGGATCTGGTGGACTCACTCTCCGAGGGCGAT...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCGCAGCGAAAGTGTTCTaGGAACTCCTTGGAGTTGGA +
Preference number: 4 (lower is better)
Translates to: PGLREGVFLRADALPATAAAKVF*ELLGVG
Trigger: TCCAACTCCAAGGAGTTCTCAGAACACTTTCGCTGC...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCAGGGTGGGCAGCGTCTaGTCAGCTCCGTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRRVGSV*SAPFFF
Trigger: AAAGAAGAACGGAGCTGAGCAGACGCTGCCCACCCT...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCGGGAGCTCTCAGGTGTaGGGACAGAGCACCAGACCT +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSGSSQV*GQSTRP
Trigger: AGGTCTGGTGCTCTGTCCGCACACCTGAGAGCTCCC...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCAAGCGAGAGGGGCTGTaGGGATCCGTGATGAGGCCT +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSKREGL*GSVMRP
Trigger: AGGCCTCATCACGGATCCGCACAGCCCCTCTCGCTT...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCCCTTTTTCTGTCCGTTCTTGTCTGGTACTaGATGCCCAGGGCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: VATWLRWELAAAPSLFLSVLVWY*MPRAAR
Trigger: CCTGGCAGCCCTGGGCATCCAGTACCAGACAAGAAC...GGACAGAAAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp TCCCCAGCTCCAAACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTTGAGCTGCCTCGCTCACACTaGCCGTGGCATTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: SPAPNPMSLCLQGNSGLELPRSH*PWHFPV
Trigger: TACTGGAAAATGCCACGGCCAGTGTGAGCGAGGCAG...CTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGTTTGGAGCTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCGCTCCATCAGGGGCTTaGCCCGAAGCTCCTCAATCC +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSAPSGA*PEAPQS
Trigger: GGATTGAGGAGCTTCGGGCCAAGCCCCTGATGGAGC...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGCTGGGAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCGTCGTAGACCACGATTaGCTCAGACTCATTGATCTC +
Preference number: 4 (lower is better)
Translates to: GWEEGGNMAPLGASCSSFVVDHD*LRLIDL
Trigger: GAGATCAATGAGTCTGAGCCAATCGTGGTCTACGAC...GAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGCTGGGAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCCGAAGTTCAAGGCGTTaGGTGAAGAGCGGGTATAAA +
Preference number: 4 (lower is better)
Translates to: GWEEGGNMAPLGASCSSFRSSRR*VKSGYK
Trigger: TTTATACCCGCTCTTCACCCAACGCCTTGAACTTCG...GAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCGAAAGGGTAACCAGTTaGTGGCAGGTGCCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRERVTS*WQVPRS
Trigger: AGACCTTGGCACCTGCCATCAACTGGTTACCCTTTC...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCAGCTGTGACCCTCCATaGGAAGTTGAAAAAGCGCAT +
Preference number: 4 (lower is better)
Translates to: PGLREGVFLRADALPATASCDPP*EVEKAH
Trigger: ATGCGCTTTTTCAACTTCTCATGGAGGGTCACAGCT...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATTTGGGCTTTTCTCTCTaGCTCGCTCACACTGGCCGT +
Preference number: 4 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNLGFSL*LAHTGR
Trigger: ACGGCCAGTGTGAGCGAGGCAGAGAGAAAAGCCCAA...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACAATGCACTCCGTCTGCTaGTTGAACGCCTCCACGGAC +
Preference number: 4 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTMHSVC*LNASTD
Trigger: GTCCGTGGAGGCGTTCAAGCAGCAGACGGAGTGCAT...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp TTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGGCCGGACTGGTCCACCTaGATCACATTGCTGTTGGAA +
Preference number: 4 (lower is better)
Translates to: LGAPLGKQAKCCLLVGLRPDWST*ITLLLE
Trigger: TTCCAACAGCAATGTGATCCAGGTGGACCAGTCCGG...CCTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGTCAGGTAATAGTCTCTaGAGGGCAAGCCAAGGCCGG +
Preference number: 4 (lower is better)
Translates to: QELAPCRSHENCGERHLVSGNSL*RASQGR
Trigger: CCGGCCTTGGCTTGCCCTCCAGAGACTATTACCTGA...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCGATCTGCTGCATCTGTaGCCGGATGGCATCCTCGTC +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSDLLHL*PDGILV
Trigger: GACGAGGATGCCATCCGGCCACAGATGCAGCAGATC...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCCATCCGCCTTCTCCTTaGCTGATCTCCGAGTCTCTT +
Preference number: 4 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRHPPSP*LISESL
Trigger: AAGAGACTCGGAGATCAGCCAAGGAGAAGGCGGATG...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp CTTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGGGAGCTTTTCTGAGCTaGTCAGCTGTGACCCTCCAT +
Preference number: 4 (lower is better)
Translates to: LGGSTGKASQMLPPSGAQGAFLS*SAVTLH
Trigger: ATGGAGGGTCACAGCTGACCAGCTCAGAAAAGCTCC...CTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp TTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGGGTTCTGAGAACTCCTTaGAGTTGGAGAGCGAGCCGA +
Preference number: 4 (lower is better)
Translates to: LGAPLGKQAKCCLLVGLRVLRTP*SWRASR
Trigger: TCGGCTCGCTCTCCAACTCCAAGGAGTTCTCAGAAC...CCTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp ACCCCATGTCCTTGTGCCTGCAGGGAAACTCCGGGCTaGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTT +
Preference number: 4 (lower is better)
Translates to: TPCPCACRETPG*REGVFLRADAL
Trigger: AAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCCCTGCAGGCACAAGGACATGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp GTGTTGGCTTCTAGTCAGGACACTTGGGGGCTCCACTGGGAAAGCAAGCCAAATTTCTCGTCGGCGTCCTaGAAGCGCTGGTCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: VLASSQDTWGLHWESKPNFSSAS*KRWSRK
Trigger: CTTCCTGGACCAGCGCTTTCAGGACGCCGACGAGAA...ATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAGTGTCCTGACTAGAAGCCAACAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GAGAAGGTCACGCCCATAACCAGGCCCTTCAGCTGCTCACCCCCTCTGCCTGGGGTCTTCTGCAAAGGTTaGTTTCACAAACATGGGTCC +
Preference number: 4 (lower is better)
Translates to: EKVTPITRPFSCSPPLPGVFCKG*FHKHGS
Trigger: GGACCCATGTTTGTGAAAGCAACCTTTGCAGAAGAC...CCCAGGCAGAGGGGGTGAGCAGCTGAAGGGCCTGGTTATGGGCGTGACCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCGGCACGGGTCTACTGTaGGGTCCATGGAGTTTAGGA +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSGTGLL*GPWSLG
Trigger: TCCTAAACTCCATGGACCCCACAGTAGACCCGTGCC...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCCGATCTCGTTCTTGGTaGGCGAGTAGTAAGCGTTCA +
Preference number: 4 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRRSRSW*ASSKRS
Trigger: TGAACGCTTACTACTCGCCCACCAAGAACGAGATCG...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp TGTCCAGGATGCCGGAGCTTCACAGGGGGTCAAATCTaGGCTTCGAGTGGTGAGGCTCCATCCATCTTAGGC +
Preference number: 4 (lower is better)
Translates to: CPGCRSFTGGQI*ASSGEAPSILG
Trigger: GCCTAAGATGGATGGAGCCTCACCACTCGAAGCCAAGATTTGACCCCCTGTGAAGCTCCGGCATCCTGGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp TCCCTGGAGCCCAATGGGGCTGGGAACATTCCAGTCTaGGCCTGCTCTGGCTACAGCATCCACCTCCAAAAA +
Preference number: 4 (lower is better)
Translates to: SLEPNGAGNIPV*ACSGYSIHLQK
Trigger: TTTTTGGAGGTGGATGCTGTAGCCAGAGCAGGCCAAGACTGGAATGTTCCCAGCCCCATTGGGCTCCAGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGTCTTGGAGTCCGCGCTaGCATAAACAGAGAAGAAGG +
Preference number: 4 (lower is better)
Translates to: QELAPCRSHENCGERHLVSWSPR*HKQRRR
Trigger: CCTTCTTCTCTGTTTATGTCAGCGCGGACTCCAAGA...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATCCCTCCATGAGAAGTTaGAAAAGCGCATGGCGTTCT +
Preference number: 4 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNPSMRS*KSAWRS
Trigger: AGAACGCCATGCGCTTTTTCAACTTCTCATGGAGGG...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCCCTTTTTCTGTCCCGTTCACGCTGTAGTTaGTGTATTGCTGCACCATGC +
Preference number: 4 (lower is better)
Translates to: VATWLRWELAAAPSLFLSRSRCS*CIAAPC
Trigger: GCATGGTGCAGCAATACAGCAACTACAGCGTGAACG...GGACAGAAAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTGCTTGATGACAGCTTaGTTGTGTTCCCAGAGGTTG +
Preference number: 4 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRCLMTA*LCSQRL
Trigger: CAACCTCTGGGAACACAACCAAGCTGTCATCAAGCA...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGACACGATCTCGTTCTTaGTGGGCGAGTAGTAAGCGT +
Preference number: 4 (lower is better)
Translates to: QELAPCRSHENCGERHLVTRSRS*WASSKR
Trigger: ACGCTTACTACTCGCCCACCAAGAACGAGATCGTGT...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCGGATCACATTGCTGTTaGAATTCTTGGAGTCCGCGC +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSGSHCC*NSWSPR
Trigger: GCGCGGACTCCAAGAATTCCAACAGCAATGTGATCC...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp TTGGGTATCAACCCATCCTTGTTGGGCTTCCCATGGTaGGACTCCAGCGACAGGACAGGTAAGCTGAGAAGG +
Preference number: 4 (lower is better)
Translates to: LGINPSLLGFPW*DSSDRTGKLRR
Trigger: CCTTCTCAGCTTACCTGTCCTGTCGCTGGAGTCCAACCATGGGAAGCCCAACAAGGATGGGTTGATACCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp GGGGTGAGGGGAATCCCTCTATCTACAAGGACTGAATaGATTCAATGTGCGTGCCACGGGTGGCTGAAAGCC +
Preference number: 4 (lower is better)
Translates to: GVRGIPLSTRTE*IQCACHGWLKA
Trigger: GGCTTTCAGCCACCCGTGGCACGCACATTGAATCAATTCAGTCCTTGTAGATAGAGGGATTCCCCTCACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp GCACTACTAGGCTTCTCCCACACATATCACAAGAGCTaGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGC +
Preference number: 4 (lower is better)
Translates to: ALLGFSHTYHKS*LPAGVMRTAVS
Trigger: GCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTGTGATATGTGTGGGAGAAGCCTAGTAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCGTAGAGATCAGGAACTaGTGTGTAGTCATTGAAGAC +
Preference number: 4 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRVEIRN*CVVIED
Trigger: GTCTTCAATGACTACACAGCAGTTCCTGATCTCTAC...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CCA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTAGAGCGGGTATAAAATaGCGCCTGCAGTATTCCAGC +
Preference number: 4 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPRAGIK*RLQYSS
Trigger: GCTGGAATACTGCAGGCGCCATTTTATACCCGCTCT...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp GTGTTGGCTTCTAGTCAGGACACTTGGGGGCTCCACTGGGAAAGCAAGCCAAATGGCGTCATACTCCACTaGTCTCTGTTGGGAGCTTTT +
Preference number: 4 (lower is better)
Translates to: VLASSQDTWGLHWESKPNGVILH*SLLGAF
Trigger: AAAAGCTCCCAACAGAGATCAGTGGAGTATGACGCC...ATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAGTGTCCTGACTAGAAGCCAACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTGGAAGGAGCTTGTTTTaGGTACCAGGTTCCACATCA +
Preference number: 4 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPGRSLF*VPGSTS
Trigger: TGATGTGGAACCTGGTACGCAAAACAAGCTCCTTCC...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp CAGAGGATCAGTGAAGCTGACCACTTCAGGATGTCAGAATTGCTACAGAGAGGCAACAGAGAAGAAGGGTaGGGTGCGGTAGTGAGCTGT +
Preference number: 4 (lower is better)
Translates to: QRISEADHFRMSELLQRGNREEG*GAVVSC
Trigger: ACAGCTCACTACCGCACCTCACCCTTCTTCTCTGTT...GCCTCTCTGTAGCAATTCTGACATCCTGAAGTGGTCAGCTTCACTGATCCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR TCA 90 bp GTGTTGGCTTCTAGTCAGGACACTTGGGGGCTCCACTGGGAAAGCAAGCCAAATCTGCTGTGTAGTCATTaGAGACTTTGTCCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: VLASSQDTWGLHWESKPNLLCSH*RLCPAP
Trigger: AGGAGCTGGACAAAGTCTTCAATGACTACACAGCAG...ATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAGTGTCCTGACTAGAAGCCAACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTCCACCTGGATCACATTaGTGTTGGAATTCTTGGAGT +
Preference number: 4 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPPPGSH*CWNSWS
Trigger: ACTCCAAGAATTCCAACAGCAATGTGATCCAGGTGG...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR GCA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCATTCTTACTGTCTTCTaGAAAGGTTGCTTTCACAAA +
Preference number: 4 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSILTVF*KGCFHK
Trigger: TTTGTGAAAGCAACCTTTGCAGAAGACAGTAAGAAT...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
3UTR CAA 72 bp CAAAAATATATCTTTAAAGCATTTGACACAGTGGTATaGTGGTGTATCTGGCATTGGATGTGGGCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: QKYIFKAFDTVV*WCIWHWMWAGG
Trigger: GCCCCCTGCCCACATCCAATGCCAGATACACCACAATACCACTGTGTCAAATGCTTTAAAGATATATTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCGGCACGGGGTTGGCCTaGATCCAGCCCCCGCAGGCG +
Preference number: 5 (lower is better)
Translates to: PGLREGVFLRADALPATAGTGLA*IQPPQA
Trigger: CGCCTGCGGGGGCTGGATCAAGGCCAACCCCGTGCC...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS GCA 90 bp CCACCGAGGTCCGAGCTGCCCAGCACCTCTGGCCGCTCCGGGAGCTaGGGAAGTTCACCTGTAGGCCATTGGGGTACACATCGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: PPRSELPSTSGRSGS*GSSPVGHWGTHRPR
Trigger: CCGAGGGCGATGTGTACCCCAATGGCCTACAGGTGAACTTCCGCAGCTCCCGGAGCGGCCAGAGGTGCTGGGCAGCTCGGACCTCGGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CCA 90 bp ACCACCAGCCGCTTCTCCACCGAGGTCCGAGCTGCCCAGCACCTCTaGCCGCTCCGGGAGCTGCGGAAGTTCACCTGTAGGCCATTGGGG +
Preference number: 5 (lower is better)
Translates to: TTSRFSTEVRAAQHL*PLRELRKFTCRPLG
Trigger: CCCCAATGGCCTACAGGTGAACTTCCGCAGCTCCCGGAGCGGCCAGAGGTGCTGGGCAGCTCGGACCTCGGTGGAGAAGCGGCTGGTGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS GCA 90 bp TGTCTGGTACTGGATGCCCAGGGCTGCCAGGCAGGCCACCAACCCTaGCGCCAGAAGCGTCACCAGCACCACCAGCCGCTTCTCCACCGA +
Preference number: 5 (lower is better)
Translates to: CLVLDAQGCQAGHQP*RQKRHQHHQPLLHR
Trigger: TCGGTGGAGAAGCGGCTGGTGGTGCTGGTGACGCTTCTGGCGGCAGGGTTGGTGGCCTGCCTGGCAGCCCTGGGCATCCAGTACCAGACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CCA 90 bp CATCGCCCTCGGAGAGTGAGTCCACCAGATCCTCTTCGTCCAGCGTaGCCCGCTTGTAGGTTGACATCCCCAGAGCGGCCAGCGCGGCGG +
Preference number: 5 (lower is better)
Translates to: HRPRRVSPPDPLRPA*PACRLTSPERPARR
Trigger: CCGCCGCGCTGGCCGCTCTGGGGATGTCAACCTACAAGCGGGCCACGCTGGACGAAGAGGATCTGGTGGACTCACTCTCCGAGGGCGATG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151110.4
CDS GCA 90 bp CAGACATACCGGAGGCGTTCTTGTCTGGTACTGGATGCCCAGGGCTaGCAGGCAGGCCACCAACCCTGCCGCCAGAAGCGTCACCAGCAC +
Preference number: 5 (lower is better)
Translates to: QTYRRRSCLVLDAQG*QAGHQPCRQKRHQH
Trigger: GTGCTGGTGACGCTTCTGGCGGCAGGGTTGGTGGCCTGCCTGGCAGCCCTGGGCATCCAGTACCAGACAAGAACGCCTCCGGTATGTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS-3UTR CAA 90 bp CAAGAGCTTGCTCCCTGCAGGAGTCATGAGAACTGCGGTGAGCGCCACCTAGTGCCATCGGGCACGGGGTaGGCCTTGATCCAGCCCCCG +
Preference number: 5 (lower is better)
Translates to: QELAPCRSHENCGERHLVPSGTG*ALIQPP
Trigger: CGGGGGCTGGATCAAGGCCAACCCCGTGCCCGATGG...CACTAGGTGGCGCTCACCGCAGTTCTCATGACTCCTGCAGGGAGCAAGCTCTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 90 bp ACTGAGACACAGGCCTCCGTCAGACATACCGGAGGCGTTCTTGTCTaGTACTGGATGCCCAGGGCTGCCAGGCAGGCCACCAACCCTGCC +
Preference number: 5 (lower is better)
Translates to: TETQASVRHTGGVLV*YWMPRAARQATNPA
Trigger: GGCAGGGTTGGTGGCCTGCCTGGCAGCCCTGGGCATCCAGTACCAGACAAGAACGCCTCCGGTATGTCTGACGGAGGCCTGTGTCTCAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS-3UTR CAA 90 bp GGCTGGGAGGAGGGTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCTTGTGTTCCCAGAGGTaGCTGAAGGTTCCCCAGCGT +
Preference number: 5 (lower is better)
Translates to: GWEEGGNMAPLGASCSSFLCSQR*LKVPQR
Trigger: ACGCTGGGGAACCTTCAGCAACCTCTGGGAACACAA...GAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCACCCTCCTCCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCCGCACGGTAGTACACTaGGGCTTTTCTCTCTGCCTC +
Preference number: 5 (lower is better)
Translates to: PGLREGVFLRADALPATARTVVH*GFSLCL
Trigger: GAGGCAGAGAGAAAAGCCCAAGTGTACTACCGTGCG...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GAGAAGGTCACGCCCATAACCAGGCCCTTCAGCTGCTCACCCCCTCTGCCTGGGGGTCCAGGAAGGAGCTaGTTTTGCGTACCAGGTTCC +
Preference number: 5 (lower is better)
Translates to: EKVTPITRPFSCSPPLPGGPGRS*FCVPGS
Trigger: GGAACCTGGTACGCAAAACAAGCTCCTTCCTGGACC...CCCAGGCAGAGGGGGTGAGCAGCTGAAGGGCCTGGTTATGGGCGTGACCTTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCAGGAAGGAGCTTGTTTaGCGTACCAGGTTCCACATC +
Preference number: 5 (lower is better)
Translates to: PGLREGVFLRADALPATARKELV*RTRFHI
Trigger: GATGTGGAACCTGGTACGCAAAACAAGCTCCTTCCT...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 90 bp CCACCTGCAGTGTGTCCTGGAAGTTGTCCTTGGCCCAGGGTCCTGTaGTATTCCAGCCTCCCAGCTTCTCAATCAGCTCCATCAGGGGCT +
Preference number: 5 (lower is better)
Translates to: PPAVCPGSCPWPRVL*YSSLPASQSAPSGA
Trigger: AGCCCCTGATGGAGCTGATTGAGAAGCTGGGAGGCTGGAATATCACAGGACCCTGGGCCAAGGACAACTTCCAGGACACACTGCAGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 90 bp CGCTGTAGTTGCTGTATTGCTGCACCATGCACTCCGTCTGCTGCTTaGACGCCTCCACGGACGAGTTCTTCCACCAGGGTCGAAGGTTCC +
Preference number: 5 (lower is better)
Translates to: RCSCCIAAPCTPSAA*TPPRTSSSTRVEGS
Trigger: GGAACCTTCGACCCTGGTGGAAGAACTCGTCCGTGGAGGCGTTCAAGCAGCAGACGGAGTGCATGGTGCAGCAATACAGCAACTACAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp CCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCTACCGCCATGCTTGATGACAGCTaGGTTGTGTTCCCAGAGGTT +
Preference number: 5 (lower is better)
Translates to: PGLREGVFLRADALPATAMLDDS*VVFPEV
Trigger: AACCTCTGGGAACACAACCAAGCTGTCATCAAGCAT...GGCGGTAGCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCCCTTTTTCTGTCCTCCTGGAAGTTGTCCTaGGCCCAGGGTCCTGTGATA +
Preference number: 5 (lower is better)
Translates to: VATWLRWELAAAPSLFLSSWKLS*AQGPVI
Trigger: TATCACAGGACCCTGGGCCAAGGACAACTTCCAGGA...GGACAGAAAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCAGTGTGTCCTGGAAGTaGTCCTTGGCCCAGGGTCCT +
Preference number: 5 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSSVSWK*SLAQGP
Trigger: AGGACCCTGGGCCAAGGACAACTTCCAGGACACACT...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTGGGGGATGGTGATGTaGGCCAGCGCCGTCTCAAAA +
Preference number: 5 (lower is better)
Translates to: GLGVLLLCPSIPNQSASSWGMVM*ASAVSK
Trigger: TTTTGAGACGGCGCTGGCCAACATCACCATCCCCCA...GGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCAGAAAGGGTAACCAGTaGATGGCAGGTGCCAAGGTC +
Preference number: 5 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRRKGNQ*MAGAKV
Trigger: GACCTTGGCACCTGCCATCAACTGGTTACCCTTTCT...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp TTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGGAGGGCAAAGCCCAGGTaGTTTTCCGTGTCACTCACA +
Preference number: 5 (lower is better)
Translates to: LGAPLGKQAKCCLLVGLRRAKPR*FSVSLT
Trigger: TGTGAGTGACACGGAAAACAACCTGGGCTTTGCCCT...CCTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GTGTTGGCTTCTAGTCAGGACACTTGGGGGCTCCACTGGGAAAGCAAGCCAAATCACTCCGTCTGCTGCTaGAACGCCTCCACGGACGAG +
Preference number: 5 (lower is better)
Translates to: VLASSQDTWGLHWESKPNHSVCC*NASTDE
Trigger: CTCGTCCGTGGAGGCGTTCAAGCAGCAGACGGAGTG...ATTTGGCTTGCTTTCCCAGTGGAGCCCCCAAGTGTCCTGACTAGAAGCCAACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACAGAGAACTCCTTGGAGTaGGAGAGCGAGCCGATGACC +
Preference number: 5 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTENSLE*ESEPMT
Trigger: GGTCATCGGCTCGCTCTCCAACTCCAAGGAGTTCTC...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp TGGAATGGCTGTCCTGTAGGCAGGTTGGGGTGGTACCCTGGGGCTTCTGGGAATTGTTCTGAGAACTCCTaGGAGTTGGAGAGCGAGCCG +
Preference number: 5 (lower is better)
Translates to: WNGCPVGRLGWYPGASGNCSENS*ELESEP
Trigger: CGGCTCGCTCTCCAACTCCAAGGAGTTCTCAGAACA...ATTCCCAGAAGCCCCAGGGTACCACCCCAACCTGCCTACAGGACAGCCATTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 90 bp GCTCGTGGCCCACTACGACACCAATGCCACCGAAGTTCAAGGCGTTaGGTGAAGAGCGGGTATAAAATGGCGCCTGCAGTATTCCAGCTG +
Preference number: 5 (lower is better)
Translates to: ARGPLRHQCHRSSRR*VKSGYKMAPAVFQL
Trigger: CAGCTGGAATACTGCAGGCGCCATTTTATACCCGCTCTTCACCCAACGCCTTGAACTTCGGTGGCATTGGTGTCGTAGTGGGCCACGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGTACCCTGGGGCTTCTGGGAATGGGGCTATGGTGTTGGCTTCTAGTCAGGACAATACCGGAGGCGTTCTaGTCTGGTACTGGATGCCCA +
Preference number: 5 (lower is better)
Translates to: GTLGLLGMGLWCWLLVRTIPEAF*SGTGCP
Trigger: TGGGCATCCAGTACCAGACAAGAACGCCTCCGGTAT...TGTCCTGACTAGAAGCCAACACCATAGCCCCATTCCCAGAAGCCCCAGGGTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp TTGGGGGCTCCACTGGGAAAGCAAGCCAAATGCTGCCTCCTAGTGGGGCTCAGGTTGATGACAGCTTGGTaGTGTTCCCAGAGGTTGCTG +
Preference number: 5 (lower is better)
Translates to: LGAPLGKQAKCCLLVGLRLMTAW*CSQRLL
Trigger: CAGCAACCTCTGGGAACACAACCAAGCTGTCATCAA...CCTGAGCCCCACTAGGAGGCAGCATTTGGCTTGCTTTCCCAGTGGAGCCCCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GAGAAGGTCACGCCCATAACCAGGCCCTTCAGCTGCTCACCCCCTCTGCCTGGGTCCTCAAACGCCTTCTaGATCTCCATGATGATCTCA +
Preference number: 5 (lower is better)
Translates to: EKVTPITRPFSCSPPLPGSSNAF*ISMMIS
Trigger: TGAGATCATCATGGAGATCAAGAAGGCGTTTGAGGA...CCCAGGCAGAGGGGGTGAGCAGCTGAAGGGCCTGGTTATGGGCGTGACCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCACTTTGTCCAGCTCCTaGGGGTCCATGATGAAGTTG +
Preference number: 5 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRTLSSS*GSMMKL
Trigger: CAACTTCATCATGGACCCCAAGGAGCTGGACAAAGT...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCCCTTTTTCTGTCCGCTGTAGTTGCTGTATaGCTGCACCATGCACTCCGT +
Preference number: 5 (lower is better)
Translates to: VATWLRWELAAAPSLFLSAVVAV*LHHALR
Trigger: ACGGAGTGCATGGTGCAGCAATACAGCAACTACAGC...GGACAGAAAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGAAACTCCGGGCTTGAGAGAAGGGGTCTTTCTGAGGGCAGATGCCCTTCCCGCAGACATTTGTCGGTGTaGTTGATGAGGGTGGAGACT +
Preference number: 5 (lower is better)
Translates to: GNSGLERRGLSEGRCPSRRHLSV*LMRVET
Trigger: AGTCTCCACCCTCATCAACAACACCGACAAATGTCT...GCGGGAAGGGCATCTGCCCTCAGAAAGACCCCTTCTCTCAAGCCCGGAGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GTGGCAACATGGCTCCGCTGGGAGCTAGCTGCAGCTCCTTCCCTTTTTCTGTCCACCCTCCATGAGAAGTaGAAAAAGCGCATGGCGTTC +
Preference number: 5 (lower is better)
Translates to: VATWLRWELAAAPSLFLSTLHEK*KKRMAF
Trigger: GAACGCCATGCGCTTTTTCAACTTCTCATGGAGGGT...GGACAGAAAAAGGGAAGGAGCTGCAGCTAGCTCCCAGCGGAGCCATGTTGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 90 bp GTGGCCCACTACGACACCAATGCCACCGAAGTTCAAGGCGTTGGGTaGAGAGCGGGTATAAAATGGCGCCTGCAGTATTCCAGCTGGAAA +
Preference number: 5 (lower is better)
Translates to: VAHYDTNATEVQGVG*RAGIKWRLQYSSWK
Trigger: TTTCCAGCTGGAATACTGCAGGCGCCATTTTATACCCGCTCTTCACCCAACGCCTTGAACTTCGGTGGCATTGGTGTCGTAGTGGGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 90 bp CTCACACTGGCCGTGGCATTTTCCAGTAGATGCTTGATGACAGCTTaGTTGTGTTCCCAGAGGTTGCTGAAGGTTCCCCAGCGTGAGTGG +
Preference number: 5 (lower is better)
Translates to: LTLAVAFSSRCLMTA*LCSQRLLKVPQREW
Trigger: CCACTCACGCTGGGGAACCTTCAGCAACCTCTGGGAACACAACCAAGCTGTCATCAAGCATCTACTGGAAAATGCCACGGCCAGTGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS TCA 90 bp TTCTTCGTCCCATACATAACCTCCATGAACTTCTCGTCGGCGTCCTaGAAGCGCTGGTCCAGGAAGGAGCTTGTTTTGCGTACCAGGTTC +
Preference number: 5 (lower is better)
Translates to: FFVPYITSMNFSSAS*KRWSRKELVLRTRF
Trigger: GAACCTGGTACGCAAAACAAGCTCCTTCCTGGACCAGCGCTTTCAGGACGCCGACGAGAAGTTCATGGAGGTTATGTATGGGACGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp GGCTTGGGGTTCTGCTTTTGTGCCCATCCATCCCTAACCAGTCTGCGTCTTCCTTGTCTTCTGCAAAGGTaGCTTTCACAAACATGGGTC +
Preference number: 5 (lower is better)
Translates to: GLGFCFCAHPSLTSLRLPCLLQR*LSQTWV
Trigger: GACCCATGTTTGTGAAAGCAACCTTTGCAGAAGACA...AGGAAGACGCAGACTGGTTAGGGATGGATGGGCACAAAAGCAGAACCCCAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 90 bp ATCTCTGTTGGGAGCTTTTCTGAGCTGGTCAGCTGTGACCCTCCATaGGAAGTTGAAAAAGCGCATGGCGTTCTCAAAGTAGAGATCAGG +
Preference number: 5 (lower is better)
Translates to: ISVGSFSELVSCDPP*EVEKAHGVLKVEIR
Trigger: CCTGATCTCTACTTTGAGAACGCCATGCGCTTTTTCAACTTCTCATGGAGGGTCACAGCTGACCAGCTCAGAAAAGCTCCCAACAGAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS-3UTR CAA 90 bp CAGAGGATCAGTGAAGCTGACCACTTCAGGATGTCAGAATTGCTACAGAGAGGCTCCACCTGGATCACATaGCTGTTGGAATTCTTGGAG +
Preference number: 5 (lower is better)
Translates to: QRISEADHFRMSELLQRGSTWIT*LLEFLE
Trigger: CTCCAAGAATTCCAACAGCAATGTGATCCAGGTGGA...GCCTCTCTGTAGCAATTCTGACATCCTGAAGTGGTCAGCTTCACTGATCCTCTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 90 bp TGGCTATATTCTTACTGTCTTCTGCAAAGGTTGCTTTCACAAACATaGGTCCCAGGGCAAAGCCCAGGTTGTTTTCCGTGTCACTCACAC +
Preference number: 5 (lower is better)
Translates to: WLYSYCLLQRLLSQT*VPGQSPGCFPCHSH
Trigger: GTGTGAGTGACACGGAAAACAACCTGGGCTTTGCCCTGGGACCCATGTTTGTGAAAGCAACCTTTGCAGAAGACAGTAAGAATATAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS GCA 90 bp CTTGATCTCCATGATGATCTCACTGGCTATATTCTTACTGTCTTCTaGAAAGGTTGCTTTCACAAACATGGGTCCCAGGGCAAAGCCCAG +
Preference number: 5 (lower is better)
Translates to: LDLHDDLTGYILTVF*KGCFHKHGSQGKAQ
Trigger: CTGGGCTTTGCCCTGGGACCCATGTTTGTGAAAGCAACCTTTGCAGAAGACAGTAAGAATATAGCCAGTGAGATCATCATGGAGATCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS GCA 72 bp CAGCACCACCAGCCGCTTCTCCACCGAGGTCCGAGCTaGCCAGCACCTCTGGCCGCTCCGGGAGCTGCGGAA +
Preference number: 6 (lower is better)
Translates to: QHHQPLLHRGPS*PAPLAAPGAAE
Trigger: TTCCGCAGCTCCCGGAGCGGCCAGAGGTGCTGGGCAGCTCGGACCTCGGTGGAGAAGCGGCTGGTGGTGCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS GCA 72 bp CGGAGGCGTTCTTGTCTGGTACTGGATGCCCAGGGCTaGCAGGCAGGCCACCAACCCTGCCGCCAGAAGCGT +
Preference number: 6 (lower is better)
Translates to: RRRSCLVLDAQG*QAGHQPCRQKR
Trigger: ACGCTTCTGGCGGCAGGGTTGGTGGCCTGCCTGGCAGCCCTGGGCATCCAGTACCAGACAAGAACGCCTCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS GCA 72 bp GAGAGCGAGCCGATGACCCGGAAGCGAGAGGGGCTGTaGGGATCCGTGATGAGGCCTTCGTGGGAGCTCTCA +
Preference number: 6 (lower is better)
Translates to: ESEPMTRKREGL*GSVMRPSWELS
Trigger: TGAGAGCTCCCACGAAGGCCTCATCACGGATCCGCACAGCCCCTCTCGCTTCCGGGTCATCGGCTCGCTCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 72 bp TGTTCCCAGAGGTTGCTGAAGGTTCCCCAGCGTGAGTaGCCATCGGGCACGGGGTTGGCCTTGATCCAGCCC +
Preference number: 6 (lower is better)
Translates to: CSQRLLKVPQRE*PSGTGLALIQP
Trigger: GGGCTGGATCAAGGCCAACCCCGTGCCCGATGGCCACTCACGCTGGGGAACCTTCAGCAACCTCTGGGAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CCA 72 bp CAGCGCCGTCTCAAAATCCAGGATCTGCTGCATCTGTaGCCGGATGGCATCCTCGTCCCCACCGCCCAGGAG +
Preference number: 6 (lower is better)
Translates to: QRRLKIQDLLHL*PDGILVPTAQE
Trigger: CTCCTGGGCGGTGGGGACGAGGATGCCATCCGGCCACAGATGCAGCAGATCCTGGATTTTGAGACGGCGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 90 bp GGAGAGCCAGGCGGGCAGCGAAAGTGTTCTGAGAACTCCTTGGAGTaGGAGAGCGAGCCGATGACCCGGAAGCGAGAGGGGCTGTGCGGA +
Preference number: 6 (lower is better)
Translates to: GEPGGQRKCSENSLE*ESEPMTRKREGLCG
Trigger: TCCGCACAGCCCCTCTCGCTTCCGGGTCATCGGCTCGCTCTCCAACTCCAAGGAGTTCTCAGAACACTTTCGCTGCCCGCCTGGCTCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 90 bp TGGTCACTGAGACACAGGCCTCCGTCAGACATACCGGAGGCGTTCTaGTCTGGTACTGGATGCCCAGGGCTGCCAGGCAGGCCACCAACC +
Preference number: 6 (lower is better)
Translates to: WSLRHRPPSDIPEAF*SGTGCPGLPGRPPT
Trigger: GGTTGGTGGCCTGCCTGGCAGCCCTGGGCATCCAGTACCAGACAAGAACGCCTCCGGTATGTCTGACGGAGGCCTGTGTCTCAGTGACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CCA 72 bp CGGAGAGTGAGTCCACCAGATCCTCTTCGTCCAGCGTaGCCCGCTTGTAGGTTGACATCCCCAGAGCGGCCA +
Preference number: 6 (lower is better)
Translates to: RRVSPPDPLRPA*PACRLTSPERP
Trigger: TGGCCGCTCTGGGGATGTCAACCTACAAGCGGGCCACGCTGGACGAAGAGGATCTGGTGGACTCACTCTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151110.4
CDS GCA 72 bp ATGTTGGCCAGCGCCGTCTCAAAATCCAGGATCTGCTaGATCTGTGGCCGGATGGCATCCTCGTCCCCACCG +
Preference number: 6 (lower is better)
Translates to: MLASAVSKSRIC*ICGRMASSSPP
Trigger: CGGTGGGGACGAGGATGCCATCCGGCCACAGATGCAGCAGATCCTGGATTTTGAGACGGCGCTGGCCAACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp GAGCCAGGCGGGCAGCGAAAGTGTTCTGAGAACTCCTaGGAGTTGGAGAGCGAGCCGATGACCCGGAAGCGA +
Preference number: 6 (lower is better)
Translates to: EPGGQRKCSENS*ELESEPMTRKR
Trigger: TCGCTTCCGGGTCATCGGCTCGCTCTCCAACTCCAAGGAGTTCTCAGAACACTTTCGCTGCCCGCCTGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 90 bp GTGTCGACCGTTCACGGGCTCCCCGTTCACGCTGTAGTTGCTGTATaGCTGCACCATGCACTCCGTCTGCTGCTTGAACGCCTCCACGGA +
Preference number: 6 (lower is better)
Translates to: VSTVHGLPVHAVVAV*LHHALRLLLERLHG
Trigger: TCCGTGGAGGCGTTCAAGCAGCAGACGGAGTGCATGGTGCAGCAATACAGCAACTACAGCGTGAACGGGGAGCCCGTGAACGGTCGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS GCA 72 bp GTCGACCGTTCACGGGCTCCCCGTTCACGCTGTAGTTaGTGTATTGCTGCACCATGCACTCCGTCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: VDRSRAPRSRCS*CIAAPCTPSAA
Trigger: AGCAGCAGACGGAGTGCATGGTGCAGCAATACAGCAACTACAGCGTGAACGGGGAGCCCGTGAACGGTCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 90 bp CTTCCACCAGGGTCGAAGGTTCCCATCCTTGTCGTACTCCCGACCTaGATCATCGAAAGCGTGAGTCAGCTCGTGGCCCACTACGACACC +
Preference number: 6 (lower is better)
Translates to: LPPGSKVPILVVLPT*IIESVSQLVAHYDT
Trigger: GGTGTCGTAGTGGGCCACGAGCTGACTCACGCTTTCGATGATCAAGGTCGGGAGTACGACAAGGATGGGAACCTTCGACCCTGGTGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 72 bp TGCTGTATTGCTGCACCATGCACTCCGTCTGCTGCTTaGACGCCTCCACGGACGAGTTCTTCCACCAGGGTC +
Preference number: 6 (lower is better)
Translates to: CCIAAPCTPSAA*TPPRTSSSTRV
Trigger: GACCCTGGTGGAAGAACTCGTCCGTGGAGGCGTTCAAGCAGCAGACGGAGTGCATGGTGCAGCAATACAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS GCA 72 bp AGCTGGTTGCTGGTGAGACCCAGGGTGGGCAGCGTCTaGTCAGCTCCGTTCTTCTTTACCCAGTTCTGGTAC +
Preference number: 6 (lower is better)
Translates to: SWLLVRPRVGSV*SAPFFFTQFWY
Trigger: GTACCAGAACTGGGTAAAGAAGAACGGAGCTGAGCAGACGCTGCCCACCCTGGGTCTCACCAGCAACCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp GGGTCGAAGGTTCCCATCCTTGTCGTACTCCCGACCTaGATCATCGAAAGCGTGAGTCAGCTCGTGGCCCAC +
Preference number: 6 (lower is better)
Translates to: GSKVPILVVLPT*IIESVSQLVAH
Trigger: GTGGGCCACGAGCTGACTCACGCTTTCGATGATCAAGGTCGGGAGTACGACAAGGATGGGAACCTTCGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp GTTCACGGGCTCCCCGTTCACGCTGTAGTTGCTGTATaGCTGCACCATGCACTCCGTCTGCTGCTTGAACGC +
Preference number: 6 (lower is better)
Translates to: VHGLPVHAVVAV*LHHALRLLLER
Trigger: GCGTTCAAGCAGCAGACGGAGTGCATGGTGCAGCAATACAGCAACTACAGCGTGAACGGGGAGCCCGTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 72 bp CCTGCAGTATTCCAGCTGGAAACACGATCTCGTTCTTaGTGGGCGAGTAGTAAGCGTTCACCATGGGCGGCG +
Preference number: 6 (lower is better)
Translates to: PAVFQLETRSRS*WASSKRSPWAA
Trigger: CGCCGCCCATGGTGAACGCTTACTACTCGCCCACCAAGAACGAGATCGTGTTTCCAGCTGGAATACTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp AGATGCTTGATGACAGCTTGGTTGTGTTCCCAGAGGTaGCTGAAGGTTCCCCAGCGTGAGTGGCCATCGGGC +
Preference number: 6 (lower is better)
Translates to: RCLMTAWLCSQR*LKVPQREWPSG
Trigger: GCCCGATGGCCACTCACGCTGGGGAACCTTCAGCAACCTCTGGGAACACAACCAAGCTGTCATCAAGCATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CAA 72 bp TTGCTGTATTGCTGCACCATGCACTCCGTCTGCTGCTaGAACGCCTCCACGGACGAGTTCTTCCACCAGGGT +
Preference number: 6 (lower is better)
Translates to: LLYCCTMHSVCC*NASTDEFFHQG
Trigger: ACCCTGGTGGAAGAACTCGTCCGTGGAGGCGTTCAAGCAGCAGACGGAGTGCATGGTGCAGCAATACAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 72 bp CTTGGAGTCCGCGCTGACATAAACAGAGAAGAAGGGTaGGGTGCGGTAGTGAGCTGTGACCACCTGCAGTGT +
Preference number: 6 (lower is better)
Translates to: LGVRADINREEG*GAVVSCDHLQC
Trigger: ACACTGCAGGTGGTCACAGCTCACTACCGCACCTCACCCTTCTTCTCTGTTTATGTCAGCGCGGACTCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 72 bp TCTCGTTCTTGGTGGGCGAGTAGTAAGCGTTCACCATaGGCGGCGTCATACTCCACTGATCTCTGTTGGGAG +
Preference number: 6 (lower is better)
Translates to: SRSWWASSKRSP*AASYSTDLCWE
Trigger: CTCCCAACAGAGATCAGTGGAGTATGACGCCGCCCATGGTGAACGCTTACTACTCGCCCACCAAGAACGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 72 bp GCAGTATTCCAGCTGGAAACACGATCTCGTTCTTGGTaGGCGAGTAGTAAGCGTTCACCATGGGCGGCGTCA +
Preference number: 6 (lower is better)
Translates to: AVFQLETRSRSW*ASSKRSPWAAS
Trigger: TGACGCCGCCCATGGTGAACGCTTACTACTCGCCCACCAAGAACGAGATCGTGTTTCCAGCTGGAATACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp CAGCCTCCCAGCTTCTCAATCAGCTCCATCAGGGGCTaGGCCCGAAGCTCCTCAATCCTAGTTTCGTTCATG +
Preference number: 6 (lower is better)
Translates to: QPPSFSISSIRG*ARSSSILVSFM
Trigger: CATGAACGAAACTAGGATTGAGGAGCTTCGGGCCAAGCCCCTGATGGAGCTGATTGAGAAGCTGGGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 90 bp ACACTGGCCGTGGCATTTTCCAGTAGATGCTTGATGACAGCTTGGTaGTGTTCCCAGAGGTTGCTGAAGGTTCCCCAGCGTGAGTGGCCA +
Preference number: 6 (lower is better)
Translates to: TLAVAFSSRCLMTAW*CSQRLLKVPQREWP
Trigger: TGGCCACTCACGCTGGGGAACCTTCAGCAACCTCTGGGAACACAACCAAGCTGTCATCAAGCATCTACTGGAAAATGCCACGGCCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS GCA 72 bp GCCTCGCTCACACTGGCCGTGGCATTTTCCAGTAGATaGTTGATGACAGCTTGGTTGTGTTCCCAGAGGTTG +
Preference number: 6 (lower is better)
Translates to: ASLTLAVAFSSR*LMTAWLCSQRL
Trigger: CAACCTCTGGGAACACAACCAAGCTGTCATCAAGCATCTACTGGAAAATGCCACGGCCAGTGTGAGCGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CCA 72 bp CCACTACGACACCAATGCCACCGAAGTTCAAGGCGTTaGGTGAAGAGCGGGTATAAAATGGCGCCTGCAGTA +
Preference number: 6 (lower is better)
Translates to: PLRHQCHRSSRR*VKSGYKMAPAV
Trigger: TACTGCAGGCGCCATTTTATACCCGCTCTTCACCCAACGCCTTGAACTTCGGTGGCATTGGTGTCGTAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 72 bp CCATACATAACCTCCATGAACTTCTCGTCGGCGTCCTaGAAGCGCTGGTCCAGGAAGGAGCTTGTTTTGCGT +
Preference number: 6 (lower is better)
Translates to: PYITSMNFSSAS*KRWSRKELVLR
Trigger: ACGCAAAACAAGCTCCTTCCTGGACCAGCGCTTTCAGGACGCCGACGAGAAGTTCATGGAGGTTATGTATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS TCA 72 bp TACGACACCAATGCCACCGAAGTTCAAGGCGTTGGGTaGAGAGCGGGTATAAAATGGCGCCTGCAGTATTCC +
Preference number: 6 (lower is better)
Translates to: YDTNATEVQGVG*RAGIKWRLQYS
Trigger: GGAATACTGCAGGCGCCATTTTATACCCGCTCTTCACCCAACGCCTTGAACTTCGGTGGCATTGGTGTCGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CCA 72 bp GCCGTGGCATTTTCCAGTAGATGCTTGATGACAGCTTaGTTGTGTTCCCAGAGGTTGCTGAAGGTTCCCCAG +
Preference number: 6 (lower is better)
Translates to: AVAFSSRCLMTA*LCSQRLLKVPQ
Trigger: CTGGGGAACCTTCAGCAACCTCTGGGAACACAACCAAGCTGTCATCAAGCATCTACTGGAAAATGCCACGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CAA 72 bp TCGCTCACACTGGCCGTGGCATTTTCCAGTAGATGCTaGATGACAGCTTGGTTGTGTTCCCAGAGGTTGCTG +
Preference number: 6 (lower is better)
Translates to: SLTLAVAFSSRC*MTAWLCSQRLL
Trigger: CAGCAACCTCTGGGAACACAACCAAGCTGTCATCAAGCATCTACTGGAAAATGCCACGGCCAGTGTGAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CAA 72 bp AATCCTAGTTTCGTTCATGCACGCACGGTAGTACACTaGGGCTTTTCTCTCTGCCTCGCTCACACTGGCCGT +
Preference number: 6 (lower is better)
Translates to: NPSFVHARTVVH*GFSLCLAHTGR
Trigger: ACGGCCAGTGTGAGCGAGGCAGAGAGAAAAGCCCAAGTGTACTACCGTGCGTGCATGAACGAAACTAGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CAA 90 bp AAGCTCCTCAATCCTAGTTTCGTTCATGCACGCACGGTAGTACACTaGGGCTTTTCTCTCTGCCTCGCTCACACTGGCCGTGGCATTTTC +
Preference number: 6 (lower is better)
Translates to: KLLNPSFVHARTVVH*GFSLCLAHTGRGIF
Trigger: GAAAATGCCACGGCCAGTGTGAGCGAGGCAGAGAGAAAAGCCCAAGTGTACTACCGTGCGTGCATGAACGAAACTAGGATTGAGGAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CCA 72 bp AGAGCGGGTATAAAATGGCGCCTGCAGTATTCCAGCTaGAAACACGATCTCGTTCTTGGTGGGCGAGTAGTA +
Preference number: 6 (lower is better)
Translates to: RAGIKWRLQYSS*KHDLVLGGRVV
Trigger: TACTACTCGCCCACCAAGAACGAGATCGTGTTTCCAGCTGGAATACTGCAGGCGCCATTTTATACCCGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp GTGGCATTTTCCAGTAGATGCTTGATGACAGCTTGGTaGTGTTCCCAGAGGTTGCTGAAGGTTCCCCAGCGT +
Preference number: 6 (lower is better)
Translates to: VAFSSRCLMTAW*CSQRLLKVPQR
Trigger: ACGCTGGGGAACCTTCAGCAACCTCTGGGAACACAACCAAGCTGTCATCAAGCATCTACTGGAAAATGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102518.10
ENSMUST00000151110.4
CDS CCA 72 bp TCTTACTGTCTTCTGCAAAGGTTGCTTTCACAAACATaGGTCCCAGGGCAAAGCCCAGGTTGTTTTCCGTGT +
Preference number: 6 (lower is better)
Translates to: SYCLLQRLLSQT*VPGQSPGCFPC
Trigger: ACACGGAAAACAACCTGGGCTTTGCCCTGGGACCCATGTTTGTGAAAGCAACCTTTGCAGAAGACAGTAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 90 bp GTTGTTGAGCAGACATTTGTCGGTGTTGTTGATGAGGGTGGAGACTaGTCTCAAGTATTCCTTGTCGTAGACCACGATTGGCTCAGACTC +
Preference number: 6 (lower is better)
Translates to: VVEQTFVGVVDEGGD*SQVFLVVDHDWLRL
Trigger: GAGTCTGAGCCAATCGTGGTCTACGACAAGGAATACTTGAGACAAGTCTCCACCCTCATCAACAACACCGACAAATGTCTGCTCAACAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp CAGACATTTGTCGGTGTTGTTGATGAGGGTGGAGACTaGTCTCAAGTATTCCTTGTCGTAGACCACGATTGG +
Preference number: 6 (lower is better)
Translates to: QTFVGVVDEGGD*SQVFLVVDHDW
Trigger: CCAATCGTGGTCTACGACAAGGAATACTTGAGACAAGTCTCCACCCTCATCAACAACACCGACAAATGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 90 bp TCATCCATCCATTTCAGAGTGCTCAGACTCTCCTCAAACGCCTTCTaGATCTCCATGATGATCTCACTGGCTATATTCTTACTGTCTTCT +
Preference number: 6 (lower is better)
Translates to: SSIHFRVLRLSSNAF*ISMMISLAIFLLSS
Trigger: AGAAGACAGTAAGAATATAGCCAGTGAGATCATCATGGAGATCAAGAAGGCGTTTGAGGAGAGTCTGAGCACTCTGAAATGGATGGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10
CDS CAA 72 bp CATTTCAGAGTGCTCAGACTCTCCTCAAACGCCTTCTaGATCTCCATGATGATCTCACTGGCTATATTCTTA +
Preference number: 6 (lower is better)
Translates to: HFRVLRLSSNAF*ISMMISLAIFL
Trigger: TAAGAATATAGCCAGTGAGATCATCATGGAGATCAAGAAGGCGTTTGAGGAGAGTCTGAGCACTCTGAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102518.10