RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ECD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021810

Ensembl transcript IDs: ENSMUST00000022344.4, ENSMUST00000223955.2

Found 141 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGAAGGAAGCAGTGTGCTCGATGGAGGGATGCTTCGACCCTTTCTaGGTACCCACTGACGCGCCTGTCCACAGCAGCTTGTATAGATTC +
Preference number: 1 (lower is better)
Translates to: WKEAVCSMEGCFDPF*VPTDAPVHSSLYRF
Trigger: GAATCTATACAAGCTGCTGTGGACAGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR CCA 90 bp AAGCTCATGAGAATCGGTGTCCAGGTCACAGGACTTGGGAGACGGTaGCCCGGGGACTCTGAAACCTGCACAGAAGACAGATGCTCTTTT +
Preference number: 1 (lower is better)
Translates to: KLMRIGVQVTGLGRR*PGDSETCTEDRCSF
Trigger: AAAAGAGCATCTGTCTTCTGTGCAGGTTTCAGAGTCCCCGGGCCACCGTCTCCCAAGTCCTGTGACCTGGACACCGATTCTCATGAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR TCA 90 bp GGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATaGGAATCGGTGTCCAGGTCACAGGACTTGGGAGACGGTGGCCCG +
Preference number: 1 (lower is better)
Translates to: GDSVLGKCKTNQTSS*ESVSRSQDLGDGGP
Trigger: CGGGCCACCGTCTCCCAAGTCCTGTGACCTGGACACCGATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR TCA 90 bp AGCCTGGGTAGAGGAGGGGACAGAAGCCAAGCAAGTACCCAGGTGTaGGATGCCTCAGTCAGACCCAGTCTGTCTGCTAATGTCTTTAAT +
Preference number: 1 (lower is better)
Translates to: SLGRGGDRSQASTQV*DASVRPSLSANVFN
Trigger: ATTAAAGACATTAGCAGACAGACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCCCTCCTCTACCCAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR GCA 90 bp AACTCATTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGTCTCCCGAGTGCTGGGATTAAAGGCGTGCTTATGAAG +
Preference number: 1 (lower is better)
Translates to: NSFSRPGWPRTQKSA*LCLPSAGIKGVLMK
Trigger: CTTCATAAGCACGCCTTTAATCCCAGCACTCGGGAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAAAATGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR TCA 90 bp TGGGTACCCACTGACGCGCCTGTCCACAGCAGCTTGTATAGATTCTaGAGCCAAAACAGCTTCTGGGTGTGCCGAGATTATACTCAAAGC +
Preference number: 1 (lower is better)
Translates to: WVPTDAPVHSSLYRF*SQNSFWVCRDYTQS
Trigger: GCTTTGAGTATAATCTCGGCACACCCAGAAGCTGTTTTGGCTTCAGAATCTATACAAGCTGCTGTGGACAGGCGCGTCAGTGGGTACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR CCA 90 bp GGAGAAACTGAATATTCAGAATTACACCAACAGCCAACAGCACAGTaGTTTACTACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAA +
Preference number: 1 (lower is better)
Translates to: GETEYSELHQQPTAQ*FTTMEIPSWANVKQ
Trigger: TTGTTTTACATTTGCCCAGGACGGAATCTCCATTGTAGTAAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAATATTCAGTTTCTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR-3UTR CCA 90 bp GAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCTGTCTGCCAGGTCACAGGACTTaGGAGACGGTGGCCCGGGGA +
Preference number: 2 (lower is better)
Translates to: EAKQVPRCEMPQSDPVCLPGHRT*ETVARG
Trigger: TCCCCGGGCCACCGTCTCCCAAGTCCTGTGACCTGG...CAGACAGACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR-3UTR CCA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGACGAAGCAGGGCAGCCTaGGTAGAGGAGGGGACAGAA +
Preference number: 2 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGRSRAA*VEEGTE
Trigger: TTCTGTCCCCTCCTCTACCCAGGCTGCCCTGCTTCG...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR-3UTR CCA 90 bp TCGATGGAGGGATGCTTCGACCCTTTCTGGGTACCCACTGACGCGCCTGTCCACAGCCAAAACAGCTTCTaGGTGTGCCGAGATTATACT +
Preference number: 2 (lower is better)
Translates to: SMEGCFDPFWVPTDAPVHSQNSF*VCRDYT
Trigger: AGTATAATCTCGGCACACCCAGAAGCTGTTTTGGCT...GTGGACAGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR-3UTR TCA 90 bp TTCAGAATTACACCAACAGCCAACAGCACAGTGGTTTACTACAATGGAGATTCCGTGGCCCGGGGACTCTaGAACCTGCACAGAAGACAG +
Preference number: 2 (lower is better)
Translates to: FRITPTANSTVVYYNGDSVARGL*NLHRRQ
Trigger: CTGTCTTCTGTGCAGGTTTCAGAGTCCCCGGGCCAC...GGAATCTCCATTGTAGTAAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR CAA 90 bp CAGCTTCTGGGTGTGCCGAGATTATACTCAAAGCTTGCTGGATTGTaGGTGGTGTCATGGGTAACCATGGTATCCTTTCAGATTTCCTCG +
Preference number: 2 (lower is better)
Translates to: QLLGVPRLYSKLAGL*VVSWVTMVSFQISS
Trigger: CGAGGAAATCTGAAAGGATACCATGGTTACCCATGACACCACCAACAATCCAGCAAGCTTTGAGTATAATCTCGGCACACCCAGAAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR-3UTR GCA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGAATGAAATGGGATTTTTaGCAACTTAGAATTCTGACC +
Preference number: 2 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGMKWDF*QLRILT
Trigger: GGTCAGAATTCTAAGTTGGCAAAAATCCCATTTCAT...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR GCA 72 bp GCCGGCTGGAAGGAAGCAGTGTGCTCGATGGAGGGATaGTTCGACCCTTTCTGGGTACCCACTGACGCGCCT +
Preference number: 3 (lower is better)
Translates to: AGWKEAVCSMEG*FDPFWVPTDAP
Trigger: AGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR GCA 72 bp TCTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTCTGTCTCCCGAGTGCTGGGATTAAAGGCGTG +
Preference number: 3 (lower is better)
Translates to: SRPGWPRTQKSA*LCLPSAGIKGV
Trigger: CACGCCTTTAATCCCAGCACTCGGGAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR CCA 72 bp AGAATCGGTGTCCAGGTCACAGGACTTGGGAGACGGTaGCCCGGGGACTCTGAAACCTGCACAGAAGACAGA +
Preference number: 3 (lower is better)
Translates to: RIGVQVTGLGRR*PGDSETCTEDR
Trigger: TCTGTCTTCTGTGCAGGTTTCAGAGTCCCCGGGCCACCGTCTCCCAAGTCCTGTGACCTGGACACCGATTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR CCA 72 bp CCCTGGCTCTCCTGGAACTCATTTTCTAGACCAGGCTaGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTC +
Preference number: 3 (lower is better)
Translates to: PWLSWNSFSRPG*PRTQKSACLCL
Trigger: GAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAAAATGAGTTCCAGGAGAGCCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR-3UTR CAA 90 bp TCGATGGAGGGATGCTTCGACCCTTTCTGGGTACCCACTGACGCGCCTGTCCACTCAAAGCTTGCTGGATaGTTGGTGGTGTCATGGGTA +
Preference number: 3 (lower is better)
Translates to: SMEGCFDPFWVPTDAPVHSKLAG*LVVSWV
Trigger: TACCCATGACACCACCAACAATCCAGCAAGCTTTGA...GTGGACAGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR-3UTR CAA 90 bp ACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATGAGTCCAGGTCACAGGACTaGGGAGACGGTGGCCCGGGG +
Preference number: 3 (lower is better)
Translates to: TMEIPSWANVKQIKQAHESRSQD*GDGGPG
Trigger: CCCCGGGCCACCGTCTCCCAAGTCCTGTGACCTGGA...CTCATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCATTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR-3UTR CAA 90 bp ATGCCGGCTGGAAGGAAGCAGTGTGCTCGATGGAGGGATGCTTCGACCCTTTCTGATTATACTCAAAGCTaGCTGGATTGTTGGTGGTGT +
Preference number: 3 (lower is better)
Translates to: MPAGRKQCARWRDASTLSDYTQS*LDCWWC
Trigger: ACACCACCAACAATCCAGCAAGCTTTGAGTATAATC...AGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR TCA 72 bp ACTGACGCGCCTGTCCACAGCAGCTTGTATAGATTCTaGAGCCAAAACAGCTTCTGGGTGTGCCGAGATTAT +
Preference number: 3 (lower is better)
Translates to: TDAPVHSSLYRF*SQNSFWVCRDY
Trigger: ATAATCTCGGCACACCCAGAAGCTGTTTTGGCTTCAGAATCTATACAAGCTGCTGTGGACAGGCGCGTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR GCA 72 bp ACAGCTTCTGGGTGTGCCGAGATTATACTCAAAGCTTaGTGGATTGTTGGTGGTGTCATGGGTAACCATGGT +
Preference number: 3 (lower is better)
Translates to: TASGCAEIILKA*WIVGGVMGNHG
Trigger: ACCATGGTTACCCATGACACCACCAACAATCCAGCAAGCTTTGAGTATAATCTCGGCACACCCAGAAGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR-3UTR CAA 90 bp GCAGCTTGTATAGATTCTGAAGCCAAAACAGCTTCTGGGTGTGCCGAGATTATAAAGCTTGCTGGATTGTaGGTGGTGTCATGGGTAACC +
Preference number: 3 (lower is better)
Translates to: AACIDSEAKTASGCAEIIKLAGL*VVSWVT
Trigger: GGTTACCCATGACACCACCAACAATCCAGCAAGCTT...TATAATCTCGGCACACCCAGAAGCTGTTTTGGCTTCAGAATCTATACAAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR TCA 72 bp GTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATaGGAATCGGTGTCCAGGTCACAGGACTTGGGAGAC +
Preference number: 3 (lower is better)
Translates to: VLGKCKTNQTSS*ESVSRSQDLGD
Trigger: GTCTCCCAAGTCCTGTGACCTGGACACCGATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR CCA 72 bp TTATACTCAAAGCTTGCTGGATTGTTGGTGGTGTCATaGGTAACCATGGTATCCTTTCAGATTTCCTCGGCA +
Preference number: 3 (lower is better)
Translates to: LYSKLAGLLVVS*VTMVSFQISSA
Trigger: TGCCGAGGAAATCTGAAAGGATACCATGGTTACCCATGACACCACCAACAATCCAGCAAGCTTTGAGTATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
3UTR CCA 72 bp GAATATTCAGAATTACACCAACAGCCAACAGCACAGTaGTTTACTACAATGGAGATTCCGTCCTGGGCAAAT +
Preference number: 3 (lower is better)
Translates to: EYSELHQQPTAQ*FTTMEIPSWAN
Trigger: ATTTGCCCAGGACGGAATCTCCATTGTAGTAAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAATATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp GAGGGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGCTGGCCCAGAGCGGTaGGGCAGTCACAAGAGACTT +
Preference number: 4 (lower is better)
Translates to: EGTEAKQVPRCEMPQSDPAGPER*GSHKRL
Trigger: AAGTCTCTTGTGACTGCCTCACCGCTCTGGGCCAGC...TGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCTGCAGCTCCTCCTTCTaGGGACCGGGCTGGGATTCT +
Preference number: 4 (lower is better)
Translates to: GTEAKQVPRCEMPQSDPVCSSSF*GPGWDS
Trigger: AGAATCCCAGCCCGGTCCCCAGAAGGAGGAGCTGCA...GACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp GGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCTGCCCATGCTGGTGTGTaGCAGTTCCTGGTCCATCCG +
Preference number: 4 (lower is better)
Translates to: GQKPSKYPGVRCLSQTQSAHAGV*QFLVHP
Trigger: CGGATGGACCAGGAACTGGCACACACCAGCATGGGC...AGACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCTCCACTCCGCCGGTCTaGCACAAACTTCTGCTGTAC +
Preference number: 4 (lower is better)
Translates to: GTEAKQVPRCEMPQSDPVSTPPV*HKLLLY
Trigger: GTACAGCAGAAGTTTGTGCCAGACCGGCGGAGTGGA...GACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCAGCTTCTGCCCATGCTaGTGTGTGCCAGTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: GTEAKQVPRCEMPQSDPVSFCPC*CVPVPG
Trigger: ACCAGGAACTGGCACACACCAGCATGGGCAGAAGCT...GACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp GCTGGAAGGAAGCAGTGTGCTCGATGGAGGGATGCTTCGACCCTTTCTGGGTACAGCATCCTCTACCATTaGGAGCTTTCCACTGCCCTC +
Preference number: 4 (lower is better)
Translates to: AGRKQCARWRDASTLSGYSILYH*ELSTAL
Trigger: GAGGGCAGTGGAAAGCTCGCAATGGTAGAGGATGCT...GTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
CDS-3UTR GCA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGAATTGGAAGCAGGTCCTaGCAGGCCCGCTTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGIGSRS*QARLGA
Trigger: AGCTCCCAAGCGGGCCTGGCAGGACCTGCTTCCAAT...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp TCCTGGAACTCATTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCGACTTTCAAGGAAGCTaGCCCAGAGCGGTGAGGCAG +
Preference number: 4 (lower is better)
Translates to: SWNSFSRPGWPRTQKSACDFQGS*PRAVRQ
Trigger: CTGCCTCACCGCTCTGGGCCAGCTTCCTTGAAAGTC...GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAAAATGAGTTCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCGCATCTTGCAGTAGCTaGTCTAACTGGTCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: GTEAKQVPRCEMPQSDPVASCSS*SNWSGE
Trigger: CTCACCAGACCAGTTAGACCAGCTACTGCAAGATGC...GACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp TCGATGGAGGGATGCTTCGACCCTTTCTGGGTACCCACTGACGCGCCTGTCCACCGTTCAATGTACTTCTaGAGAATCTCTCTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: SMEGCFDPFWVPTDAPVHRSMYF*RISLCS
Trigger: AGAGCACAGAGAGATTCTTCAGAAGTACATTGAACG...GTGGACAGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
CDS-3UTR TCA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGAAGAGACTCAGACTCCTaGGCCTCAAAGCCCACGTCA +
Preference number: 4 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGRDSDS*ASKPTS
Trigger: TGACGTGGGCTTTGAGGCTCAGGAGTCTGAGTCTCT...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp GGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCTCAGGTCTACATCCACTaGTTCAACAGCGCAATCTCC +
Preference number: 4 (lower is better)
Translates to: GQKPSKYPGVRCLSQTQSQVYIH*FNSAIS
Trigger: GGAGATTGCGCTGTTGAAGCAGTGGATGTAGACCTG...AGACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GCTGGAAGGAAGCAGTGTGCTCGATGGAGGGATGCTTCGACCCTTTCTGGGTACGGTATCAGGAAGAGATaGTACTCCACAGCATCCTCT +
Preference number: 4 (lower is better)
Translates to: AGRKQCARWRDASTLSGYGIRKR*YSTASS
Trigger: AGAGGATGCTGTGGAGTACCATCTCTTCCTGATACC...GTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
CDS-3UTR GCA 90 bp GGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCAACAGCGCAATCTCCTaGACCAGAATCTTCTTCATC +
Preference number: 4 (lower is better)
Translates to: GTEAKQVPRCEMPQSDPVNSAIS*TRIFFI
Trigger: GATGAAGAAGATTCTGGTGCAGGAGATTGCGCTGTT...GACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGAAGCTCTGCCCCCTTGTaGCTAGACACTTTGGAGATG +
Preference number: 4 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGSSAPL*LDTLEM
Trigger: CATCTCCAAAGTGTCTAGCCACAAGGGGGCAGAGCT...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp AGGAGGGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCTTGTCATTTGCAGTGTaGGATGGAGGGTCCTTATTC +
Preference number: 4 (lower is better)
Translates to: RRGQKPSKYPGVRCLSQTLSFAV*DGGSLF
Trigger: GAATAAGGACCCTCCATCCCACACTGCAAATGACAA...GGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp TCCTGGAACTCATTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCGTCATGCCGTACATATaGGCAGGAACACCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: SWNSFSRPGWPRTQKSACVMPYI*AGTPPF
Trigger: AAAAGGAGGTGTTCCTGCTCATATGTACGGCATGAC...GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAAAATGAGTTCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAGTCTGCCTCTGGCTTTATCTaGTATCAGGAAGAGATGGTA +
Preference number: 4 (lower is better)
Translates to: GQKPSKYPGVRCLSQTQSASGFI*YQEEMV
Trigger: TACCATCTCTTCCTGATACCAGATAAAGCCAGAGGC...AGACTGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp TCCTGGAACTCATTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCAGTAGCTGGTCTAACTaGTCTGGTGAGAGGTCTAAC +
Preference number: 4 (lower is better)
Translates to: SWNSFSRPGWPRTQKSACSSWSN*SGERSN
Trigger: GTTAGACCTCTCACCAGACCAGTTAGACCAGCTACT...GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAAAATGAGTTCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GGGTACCCACTGACGCGCCTGTCCACAGCAGCTTGTATAGATTCTGAAGCCAAAGCCTCTGGCTTTATCTaGTATCAGGAAGAGATGGTA +
Preference number: 4 (lower is better)
Translates to: GYPLTRLSTAACIDSEAKASGFI*YQEEMV
Trigger: TACCATCTCTTCCTGATACCAGATAAAGCCAGAGGC...TTTGGCTTCAGAATCTATACAAGCTGCTGTGGACAGGCGCGTCAGTGGGTACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
CDS-3UTR TCA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGAAATCTGCATCAAAAGTaGTTGGAGCTTCCGAAGGGT +
Preference number: 4 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGNLHQK*LELPKG
Trigger: ACCCTTCGGAAGCTCCAATCACTTTTGATGCAGATT...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp AGTGCTGGGATTAAAGGCGTGCTTATGAAGAGTCGTTTATTCCTGAGAAGGGTGTGGAAGGAAGCAGTGTaGTCGATGGAGGGATGCTTC +
Preference number: 4 (lower is better)
Translates to: SAGIKGVLMKSRLFLRRVWKEAV*SMEGCF
Trigger: GAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCA...CACCCTTCTCAGGAATAAACGACTCTTCATAAGCACGCCTTTAATCCCAGCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp TTCAGAATTACACCAACAGCCAACAGCACAGTGGTTTACTACAATGGAGATTCCTGCTTCGACCCTTTCTaGGTACCCACTGACGCGCCT +
Preference number: 4 (lower is better)
Translates to: FRITPTANSTVVYYNGDSCFDPF*VPTDAP
Trigger: AGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCA...GGAATCTCCATTGTAGTAAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGATCACAAGAGACTTCCTaGAGTCAGAAAAATGTGGGC +
Preference number: 4 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGSQETS*SQKNVG
Trigger: GCCCACATTTTTCTGACTCCAGGAAGTCTCTTGTGA...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp ACTACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATTCGGTACTGGGGATGTaGTGGAGGTGGGAGCCCGTA +
Preference number: 4 (lower is better)
Translates to: TTMEIPSWANVKQIKQAHSVLGM*WRWEPV
Trigger: TACGGGCTCCCACCTCCATCACATCCCCAGTACCGA...ATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCATTGTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp AATTACACCAACAGCCAACAGCACAGTGGTTTACTACAATGGAGATTCCGTCCTAGCATCCTCTACCATTaGGAGCTTTCCACTGCCCTC +
Preference number: 4 (lower is better)
Translates to: NYTNSQQHSGLLQWRFRPSILYH*ELSTAL
Trigger: GAGGGCAGTGGAAAGCTCGCAATGGTAGAGGATGCT...AGGACGGAATCTCCATTGTAGTAAACCACTGTGCTGTTGGCTGTTGGTGTAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp AAGGGAGAAACTGAATATTCAGAATTACACCAACAGCCAACAGCACAGTGGTTTAGCAGCCTGGGCTGTTaGTTGAGCACCGCCACAATG +
Preference number: 4 (lower is better)
Translates to: KGETEYSELHQQPTAQWFSSLGC*LSTATM
Trigger: CATTGTGGCGGTGCTCAAGCAACAGCCCAGGCTGCT...AAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAATATTCAGTTTCTCCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp AACATACCTAAGGGAGAAACTGAATATTCAGAATTACACCAACAGCCAACAGCACGCCACAATGCCGGCTaGAAGGAAGCAGTGTGCTCG +
Preference number: 4 (lower is better)
Translates to: NIPKGETEYSELHQQPTARHNAG*KEAVCS
Trigger: CGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCG...TGCTGTTGGCTGTTGGTGTAATTCTGAATATTCAGTTTCTCCCTTAGGTATGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp GCAAATGTAAAACAAATCAAACAAGCTCATGAGAATCGGTGTCCAGGTCACAGGTGCTCGATGGAGGGATaGTTCGACCCTTTCTGGGTA +
Preference number: 4 (lower is better)
Translates to: ANVKQIKQAHENRCPGHRCSMEG*FDPFWV
Trigger: TACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCA...CCTGTGACCTGGACACCGATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
3UTR CAA 72 bp GGTGTGCCGAGATTATACTCAAAGCTTGCTGGATTGTaGGTGGTGTCATGGGTAACCATGGTATCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: GVPRLYSKLAGL*VVSWVTMVSFQ
Trigger: CTGAAAGGATACCATGGTTACCCATGACACCACCAACAATCCAGCAAGCTTTGAGTATAATCTCGGCACACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
CDS-3UTR CCA 90 bp ATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATGAGAATAGGCTCTTAGGTCAATaGGGTCCCGTAGGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: MEIPSWANVKQIKQAHENRLLGQ*GPVGRR
Trigger: CCTTCTACCTACGGGACCCCATTGACCTAAGAGCCT...ATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp ACTACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATTGCTGTGTAACAGATTaGAAGCAGGTCCTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: TTMEIPSWANVKQIKQAHCCVTD*KQVLPG
Trigger: GCCTGGCAGGACCTGCTTCCAATCTGTTACACAGCA...ATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCATTGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp AAACAAATCAAACAAGCTCATGAGAATCGGTGTCCAGGTCACAGGACTTGGGAGGGATTCCAGTATATTTaGAATCAGGTTCAGGTCTAC +
Preference number: 4 (lower is better)
Translates to: KQIKQAHENRCPGHRTWEGFQYI*NQVQVY
Trigger: GTAGACCTGAACCTGATTTCAAATATACTGGAATCC...CTCCCAAGTCCTGTGACCTGGACACCGATTCTCATGAGCTTGTTTGATTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp ACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATGAGCATGAGCCAACTTCATaGCCAGTTCATAAGCTCGGT +
Preference number: 4 (lower is better)
Translates to: TMEIPSWANVKQIKQAHEHEPTS*PVHKLG
Trigger: ACCGAGCTTATGAACTGGGCATGAAGTTGGCTCATG...CTCATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp TTCAGAATTACACCAACAGCCAACAGCACAGTGGTTTACTACAATGGAGATTCCTGCATCAAAAGTGATTaGAGCTTCCGAAGGGTCTCT +
Preference number: 4 (lower is better)
Translates to: FRITPTANSTVVYYNGDSCIKSD*SFRRVS
Trigger: AGAGACCCTTCGGAAGCTCCAATCACTTTTGATGCA...GGAATCTCCATTGTAGTAAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp GCAAATGTAAAACAAATCAAACAAGCTCATGAGAATCGGTGTCCAGGTCACAGGAGCTTGTATAGATTCTaGAGCCAAAACAGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: ANVKQIKQAHENRCPGHRSLYRF*SQNSFW
Trigger: CCAGAAGCTGTTTTGGCTTCAGAATCTATACAAGCT...CCTGTGACCTGGACACCGATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp ACTACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATGGTATCAGGAAGAGATaGTACTCCACAGCATCCTCT +
Preference number: 4 (lower is better)
Translates to: TTMEIPSWANVKQIKQAHGIRKR*YSTASS
Trigger: AGAGGATGCTGTGGAGTACCATCTCTTCCTGATACC...ATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCATTGTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CCA 90 bp AAGGGAGAAACTGAATATTCAGAATTACACCAACAGCCAACAGCACAGTGGTTTAGCCAAAACAGCTTCTaGGTGTGCCGAGATTATACT +
Preference number: 4 (lower is better)
Translates to: KGETEYSELHQQPTAQWFSQNSF*VCRDYT
Trigger: AGTATAATCTCGGCACACCCAGAAGCTGTTTTGGCT...AAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAATATTCAGTTTCTCCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR GCA 90 bp GCAAATGTAAAACAAATCAAACAAGCTCATGAGAATCGGTGTCCAGGTCACAGGATTATACTCAAAGCTTaGTGGATTGTTGGTGGTGTC +
Preference number: 4 (lower is better)
Translates to: ANVKQIKQAHENRCPGHRIILKA*WIVGGV
Trigger: GACACCACCAACAATCCAGCAAGCTTTGAGTATAAT...CCTGTGACCTGGACACCGATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp ACTACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATCGTTCAATGTACTTCTaGAGAATCTCTCTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: TTMEIPSWANVKQIKQAHRSMYF*RISLCS
Trigger: AGAGCACAGAGAGATTCTTCAGAAGTACATTGAACG...ATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCATTGTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR TCA 90 bp GCAAATGTAAAACAAATCAAACAAGCTCATGAGAATCGGTGTCCAGGTCACAGGAGAATCTTCTTCATCTaGATTGTCATTTGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: ANVKQIKQAHENRCPGHRRIFFI*IVICSV
Trigger: CACACTGCAAATGACAATTCAGATGAAGAAGATTCT...CCTGTGACCTGGACACCGATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 90 bp GGTAGAAGGCCTGGACGGCTGCCGACAGCAGCCTGGGCTGTTGCTTaGGCACCGCCACAATGCCGGCTGGAAGGAAGCAGTGTGCTCGAT +
Preference number: 5 (lower is better)
Translates to: GRRPGRLPTAAWAVA*APPQCRLEGSSVLD
Trigger: ATCGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGGCTGCTGTCGGCAGCCGTCCAGGCCTTCTACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 90 bp CGCCACAATGCCGGCTGGAAGGAAGCAGTGTGCTCGATGGAGGGATaGTTCGACCCTTTCTGGGTACCCACTGACGCGCCTGTCCACAGC +
Preference number: 5 (lower is better)
Translates to: RHNAGWKEAVCSMEG*FDPFWVPTDAPVHS
Trigger: GCTGTGGACAGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp TTGAGCACCGCCACAATGCCGGCTGGAAGGAAGCAGTGTGCTCGATaGAGGGATGCTTCGACCCTTTCTGGGTACCCACTGACGCGCCTG +
Preference number: 5 (lower is better)
Translates to: LSTATMPAGRKQCAR*RDASTLSGYPLTRL
Trigger: CAGGCGCGTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp CGACAGCAGCCTGGGCTGTTGCTTGAGCACCGCCACAATGCCGGCTaGAAGGAAGCAGTGTGCTCGATGGAGGGATGCTTCGACCCTTTC +
Preference number: 5 (lower is better)
Translates to: RQQPGLLLEHRHNAG*KEAVCSMEGCFDPF
Trigger: GAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGGCTGCTGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 90 bp ATTCAATCGCTCCCGCGTGGTGAAGCTTCTGCCCATGCTGGTGTGTaGCAGTTCCTGGTCCATCCGGGCCATGTAGGACTTGAGGCTGCC +
Preference number: 5 (lower is better)
Translates to: IQSLPRGEASAHAGV*QFLVHPGHVGLEAA
Trigger: GGCAGCCTCAAGTCCTACATGGCCCGGATGGACCAGGAACTGGCACACACCAGCATGGGCAGAAGCTTCACCACGCGGGAGCGATTGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 90 bp CTGTTGCTTGAGCACCGCCACAATGCCGGCTGGAAGGAAGCAGTGTaGTCGATGGAGGGATGCTTCGACCCTTTCTGGGTACCCACTGAC +
Preference number: 5 (lower is better)
Translates to: LLLEHRHNAGWKEAV*SMEGCFDPFWVPTD
Trigger: GTCAGTGGGTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp GATCAGCGTTGTCGGGCAGTCGCACACCCATGCTGTGTAACAGATTaGAAGCAGGTCCTGCCAGGCCCGCTTGGGAGCTGTAGGATTCCA +
Preference number: 5 (lower is better)
Translates to: DQRCRAVAHPCCVTD*KQVLPGPLGSCRIP
Trigger: TGGAATCCTACAGCTCCCAAGCGGGCCTGGCAGGACCTGCTTCCAATCTGTTACACAGCATGGGTGTGCGACTGCCCGACAACGCTGATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 90 bp TTGCAGTGTGGGATGGAGGGTCCTTATTCAATCGCTCCCGCGTGGTaGAGCTTCTGCCCATGCTGGTGTGTGCCAGTTCCTGGTCCATCC +
Preference number: 5 (lower is better)
Translates to: LQCGMEGPYSIAPAW*SFCPCWCVPVPGPS
Trigger: GGATGGACCAGGAACTGGCACACACCAGCATGGGCAGAAGCTTCACCACGCGGGAGCGATTGAATAAGGACCCTCCATCCCACACTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 90 bp GGAGGTGGGAGCCCGTATCCACTCCGCCGGTCTGGCACAAACTTCTaGTGTACCAGCTGTGCGTACAGACATTTCGTGAAAGTGACCGAG +
Preference number: 5 (lower is better)
Translates to: GGGSPYPLRRSGTNF*CTSCAYRHFVKVTE
Trigger: CTCGGTCACTTTCACGAAATGTCTGTACGCACAGCTGGTACAGCAGAAGTTTGTGCCAGACCGGCGGAGTGGATACGGGCTCCCACCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 90 bp ATGAGCCAACTTCATGCCCAGTTCATAAGCTCGGTACTGGGGATGTaGTGGAGGTGGGAGCCCGTATCCACTCCGCCGGTCTGGCACAAA +
Preference number: 5 (lower is better)
Translates to: MSQLHAQFISSVLGM*WRWEPVSTPPVWHK
Trigger: TTTGTGCCAGACCGGCGGAGTGGATACGGGCTCCCACCTCCATCACATCCCCAGTACCGAGCTTATGAACTGGGCATGAAGTTGGCTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 90 bp TCCTTCTGGGGACCGGGCTGGGATTCTTTTCTGCCCGCAGCATCTTaGAGTAGCTGGTCTAACTGGTCTGGTGAGAGGTCTAACCACTGG +
Preference number: 5 (lower is better)
Translates to: SFWGPGWDSFLPAAS*SSWSNWSGERSNHW
Trigger: CCAGTGGTTAGACCTCTCACCAGACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCAGCCCGGTCCCCAGAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 90 bp AGTTCTGCAGCTCCTCCTTCTGGGGACCGGGCTGGGATTCTTTTCTaGCCGCAGCATCTTGCAGTAGCTGGTCTAACTGGTCTGGTGAGA +
Preference number: 5 (lower is better)
Translates to: SSAAPPSGDRAGILF*PQHLAVAGLTGLVR
Trigger: TCTCACCAGACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCAGCCCGGTCCCCAGAAGGAGGAGCTGCAGAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp GGACCGGGCTGGGATTCTTTTCTGCCCGCAGCATCTTGCAGTAGCTaGTCTAACTGGTCTGGTGAGAGGTCTAACCACTGGTCATCGTCC +
Preference number: 5 (lower is better)
Translates to: GPGWDSFLPAASCSS*SNWSGERSNHWSSS
Trigger: GGACGATGACCAGTGGTTAGACCTCTCACCAGACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCAGCCCGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp GTGATTGGAGCTTCCGAAGGGTCTCTGGGCAGCTCTGCCCCCTTGTaGCTAGACACTTTGGAGATGAAGGCCTTCATGCTGTCTGAGACC +
Preference number: 5 (lower is better)
Translates to: VIGASEGSLGSSAPL*LDTLEMKAFMLSET
Trigger: GGTCTCAGACAGCATGAAGGCCTTCATCTCCAAAGTGTCTAGCCACAAGGGGGCAGAGCTGCCCAGAGACCCTTCGGAAGCTCCAATCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp TGGGATTCTTTTCTGCCCGCAGCATCTTGCAGTAGCTGGTCTAACTaGTCTGGTGAGAGGTCTAACCACTGGTCATCGTCCTCCGGAGGA +
Preference number: 5 (lower is better)
Translates to: WDSFLPAASCSSWSN*SGERSNHWSSSSGG
Trigger: TCCTCCGGAGGACGATGACCAGTGGTTAGACCTCTCACCAGACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp AGGAGGGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCAGGAACTCACCATCATaGTCTTCAACCCTGGCCACT +
Preference number: 5 (lower is better)
Translates to: RRGQKPSKYPGVRCLSQTRNSPS*SSTLAT
Trigger: AGTGGCCAGGGTTGAAGACAATGATGGTGAGTTCCT...GGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp GAGGGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCAAAGCTTGCTGGATTGTaGGTGGTGTCATGGGTAACC +
Preference number: 5 (lower is better)
Translates to: EGTEAKQVPRCEMPQSDPKLAGL*VVSWVT
Trigger: GGTTACCCATGACACCACCAACAATCCAGCAAGCTT...TGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp TCACAGGACTTGGGAGACGGTGGCCCGGGGACTCTGAAACCTGCACAGAAGACATTGTGGCTAGACACTTaGGAGATGAAGGCCTTCATG +
Preference number: 5 (lower is better)
Translates to: SQDLGDGGPGTLKPAQKTLWLDT*EMKAFM
Trigger: CATGAAGGCCTTCATCTCCAAAGTGTCTAGCCACAA...TGTCTTCTGTGCAGGTTTCAGAGTCCCCGGGCCACCGTCTCCCAAGTCCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp TCTTGCAGTAGCTGGTCTAACTGGTCTGGTGAGAGGTCTAACCACTaGTCATCGTCCTCCGGAGGAAGGTCAGCTTCTTCTGTCTTGAGC +
Preference number: 5 (lower is better)
Translates to: SCSSWSNWSGERSNH*SSSSGGRSASSVLS
Trigger: GCTCAAGACAGAAGAAGCTGACCTTCCTCCGGAGGACGATGACCAGTGGTTAGACCTCTCACCAGACCAGTTAGACCAGCTACTGCAAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp TCACAGGACTTGGGAGACGGTGGCCCGGGGACTCTGAAACCTGCACAGAAGACACCTCCTTTTGCAGGCTaGTATTTGAGATTGAAAGGC +
Preference number: 5 (lower is better)
Translates to: SQDLGDGGPGTLKPAQKTPPFAG*YLRLKG
Trigger: GCCTTTCAATCTCAAATACAAGCCTGCAAAAGGAGG...TGTCTTCTGTGCAGGTTTCAGAGTCCCCGGGCCACCGTCTCCCAAGTCCTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp GAGGGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCCATCAAAGCTTGCTGGATaGTTGGTGGTGTCATGGGTA +
Preference number: 5 (lower is better)
Translates to: EGTEAKQVPRCEMPQSDPSKLAG*LVVSWV
Trigger: TACCCATGACACCACCAACAATCCAGCAAGCTTTGA...TGGGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp TCCTGGAACTCATTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCATGCTGTGTAACAGATaGGAAGCAGGTCCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: SWNSFSRPGWPRTQKSACMLCNR*EAGPAR
Trigger: CCTGGCAGGACCTGCTTCCAATCTGTTACACAGCAT...GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAAAATGAGTTCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 90 bp GTATCCACTCCGCCGGTCTGGCACAAACTTCTGCTGTACCAGCTGTaGGTACAGACATTTCGTGAAAGTGACCGAGGCCATTATTCGTGT +
Preference number: 5 (lower is better)
Translates to: VSTPPVWHKLLLYQL*VQTFRESDRGHYSC
Trigger: ACACGAATAATGGCCTCGGTCACTTTCACGAAATGTCTGTACGCACAGCTGGTACAGCAGAAGTTTGTGCCAGACCGGCGGAGTGGATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 90 bp AGGTCCTGCCAGGCCCGCTTGGGAGCTGTAGGATTCCAGTATATTTaGAATCAGGTTCAGGTCTACATCCACTGCTTCAACAGCGCAATC +
Preference number: 5 (lower is better)
Translates to: RSCQARLGAVGFQYI*NQVQVYIHCFNSAI
Trigger: GATTGCGCTGTTGAAGCAGTGGATGTAGACCTGAACCTGATTTCAAATATACTGGAATCCTACAGCTCCCAAGCGGGCCTGGCAGGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp AGGAGGGGACAGAAGCCAAGCAAGTACCCAGGTGTGAGATGCCTCAGTCAGACCGATTATACTCAAAGCTaGCTGGATTGTTGGTGGTGT +
Preference number: 5 (lower is better)
Translates to: RRGQKPSKYPGVRCLSQTDYTQS*LDCWWC
Trigger: ACACCACCAACAATCCAGCAAGCTTTGAGTATAATC...GGTCTGACTGAGGCATCTCACACCTGGGTACTTGCTTGGCTTCTGTCCCCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp TTCAGAATTACACCAACAGCCAACAGCACAGTGGTTTACTACAATGGAGATTCCAGCCTGGGCTGTTGCTaGAGCACCGCCACAATGCCG +
Preference number: 5 (lower is better)
Translates to: FRITPTANSTVVYYNGDSSLGCC*STATMP
Trigger: CGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGGCT...GGAATCTCCATTGTAGTAAACCACTGTGCTGTTGGCTGTTGGTGTAATTCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp TCCTGGAACTCATTTTCTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCATCTGAATTGTCATTaGCAGTGTGGGATGGAGGGT +
Preference number: 5 (lower is better)
Translates to: SWNSFSRPGWPRTQKSACHLNCH*QCGMEG
Trigger: ACCCTCCATCCCACACTGCAAATGACAATTCAGATG...GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAGAAAATGAGTTCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp GCTGGAAGGAAGCAGTGTGCTCGATGGAGGGATGCTTCGACCCTTTCTGGGTACAACCCTTTTGCAGGCTaGTATTTGAGATTGAAAGGC +
Preference number: 5 (lower is better)
Translates to: AGRKQCARWRDASTLSGYNPFAG*YLRLKG
Trigger: GCCTTTCAATCTCAAATACAAGCCTGCAAAAGGGTT...GTACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223955.2
CDS-3UTR CAA 90 bp TCACAGGACTTGGGAGACGGTGGCCCGGGGACTCTGAAACCTGCACAGAAGACAAGGATTCCAGTATATTaGAAATCAGGTTCAGGTCTA +
Preference number: 5 (lower is better)
Translates to: SQDLGDGGPGTLKPAQKTRIPVY*KSGSGL
Trigger: TAGACCTGAACCTGATTTCAAATATACTGGAATCCT...TGTCTTCTGTGCAGGTTTCAGAGTCCCCGGGCCACCGTCTCCCAAGTCCTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp AGGAGGAACATACCTAAGGGAGAAACTGAATATTCAGAATTACACCAACAGCCATCCTGCCAGGCCCGCTaGGGAGCTGTAGGATTCCAG +
Preference number: 5 (lower is better)
Translates to: RRNIPKGETEYSELHQQPSCQAR*GAVGFQ
Trigger: CTGGAATCCTACAGCTCCCAAGCGGGCCTGGCAGGA...TGGCTGTTGGTGTAATTCTGAATATTCAGTTTCTCCCTTAGGTATGTTCCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp TCTCCTGCACCAGAATCTTCTTCATCTGAATTGTCATTTGCAGTGTaGGATGGAGGGTCCTTATTCAATCGCTCCCGCGTGGTGAAGCTT +
Preference number: 5 (lower is better)
Translates to: SPAPESSSSELSFAV*DGGSLFNRSRVVKL
Trigger: AAGCTTCACCACGCGGGAGCGATTGAATAAGGACCCTCCATCCCACACTGCAAATGACAATTCAGATGAAGAAGATTCTGGTGCAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp ACAATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATGAGGGCAGCTCTGCCCCCTaGTGGCTAGACACTTTGGAG +
Preference number: 5 (lower is better)
Translates to: TMEIPSWANVKQIKQAHEGSSAP*WLDTLE
Trigger: CTCCAAAGTGTCTAGCCACAAGGGGGCAGAGCTGCC...CTCATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCATTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS-3UTR CAA 90 bp GACAATGTGACACGGAACCAGAAGGGAATTAATGGGGAGGGGACCAAGAGAGGATCTTCTTCATCTGAATaGTCATTTGCAGTGTGGGAT +
Preference number: 5 (lower is better)
Translates to: DNVTRNQKGINGEGTKRGSSSSE*SFAVWD
Trigger: ATCCCACACTGCAAATGACAATTCAGATGAAGAAGA...TCCTCTCTTGGTCCCCTCCCCATTAATTCCCTTCTGGTTCCGTGTCACATTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 90 bp GTTCAATGTACTTCTGAAGAATCTCTCTGTGCTCTTCTGTGCCTCTaGCTTTATCTGGTATCAGGAAGAGATGGTACTCCACAGCATCCT +
Preference number: 5 (lower is better)
Translates to: VQCTSEESLCALLCL*LYLVSGRDGTPQHP
Trigger: AGGATGCTGTGGAGTACCATCTCTTCCTGATACCAGATAAAGCCAGAGGCACAGAAGAGCACAGAGAGATTCTTCAGAAGTACATTGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022344.4
ENSMUST00000223955.2
CDS GCA 90 bp TTATCCGTTCAATGTACTTCTGAAGAATCTCTCTGTGCTCTTCTGTaGCTCTGGCTTTATCTGGTATCAGGAAGAGATGGTACTCCACAG +
Preference number: 5 (lower is better)
Translates to: LSVQCTSEESLCALL*LWLYLVSGRDGTPQ
Trigger: CTGTGGAGTACCATCTCTTCCTGATACCAGATAAAGCCAGAGGCACAGAAGAGCACAGAGAGATTCTTCAGAAGTACATTGAACGGATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022344.4
ENSMUST00000223955.2
CDS GCA 90 bp GAGATTGAAAGGCTGATTCTGCCAGATATAAGGGACCAGTATGGGTaGGAACTGGGTCATTATCCGTTCAATGTACTTCTGAAGAATCTC +
Preference number: 5 (lower is better)
Translates to: EIERLILPDIRDQYG*ELGHYPFNVLLKNL
Trigger: GAGATTCTTCAGAAGTACATTGAACGGATAATGACCCAGTTCGCACCCATACTGGTCCCTTATATCTGGCAGAATCAGCCTTTCAATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022344.4
ENSMUST00000223955.2
CDS-3UTR CAA 90 bp ATGGAGATTCCGTCCTGGGCAAATGTAAAACAAATCAAACAAGCTCATGAGAATTCAGGCAAAAATGTCTaGAAGACACGACAGGCTCTT +
Preference number: 5 (lower is better)
Translates to: MEIPSWANVKQIKQAHENSGKNV*KTRQAL
Trigger: AAGAGCCTGTCGTGTCTTCAAGACATTTTTGCCTGA...ATTCTCATGAGCTTGTTTGATTTGTTTTACATTTGCCCAGGACGGAATCTCCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 90 bp CATTCATCCTCAATGTTATCTCCAAACTTTGTCATGCCGTACATATaGGCAGGAACACCTCCTTTTGCAGGCTTGTATTTGAGATTGAAA +
Preference number: 5 (lower is better)
Translates to: HSSSMLSPNFVMPYI*AGTPPFAGLYLRLK
Trigger: TTTCAATCTCAAATACAAGCCTGCAAAAGGAGGTGTTCCTGCTCATATGTACGGCATGACAAAGTTTGGAGATAACATTGAGGATGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp CCTGGACGGCTGCCGACAGCAGCCTGGGCTGTTGCTTaGGCACCGCCACAATGCCGGCTGGAAGGAAGCAGT +
Preference number: 6 (lower is better)
Translates to: PGRLPTAAWAVA*APPQCRLEGSS
Trigger: ACTGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGGCTGCTGTCGGCAGCCGTCCAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp AAGGCCTGGACGGCTGCCGACAGCAGCCTGGGCTGTTaGTTGAGCACCGCCACAATGCCGGCTGGAAGGAAG +
Preference number: 6 (lower is better)
Translates to: KAWTAADSSLGC*LSTATMPAGRK
Trigger: CTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGGCTGCTGTCGGCAGCCGTCCAGGCCTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 72 bp GAAGGCCTGGACGGCTGCCGACAGCAGCCTGGGCTGTaGCTTGAGCACCGCCACAATGCCGGCTGGAAGGAA +
Preference number: 6 (lower is better)
Translates to: EGLDGCRQQPGL*LEHRHNAGWKE
Trigger: TTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGGCTGCTGTCGGCAGCCGTCCAGGCCTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp CTCCCGCGTGGTGAAGCTTCTGCCCATGCTGGTGTGTaGCAGTTCCTGGTCCATCCGGGCCATGTAGGACTT +
Preference number: 6 (lower is better)
Translates to: LPRGEASAHAGV*QFLVHPGHVGL
Trigger: AAGTCCTACATGGCCCGGATGGACCAGGAACTGGCACACACCAGCATGGGCAGAAGCTTCACCACGCGGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 72 bp CCTGGGCTGTTGCTTGAGCACCGCCACAATGCCGGCTaGAAGGAAGCAGTGTGCTCGATGGAGGGATGCTTC +
Preference number: 6 (lower is better)
Translates to: PGLLLEHRHNAG*KEAVCSMEGCF
Trigger: GAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTCAAGCAACAGCCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 72 bp TGTCGGGCAGTCGCACACCCATGCTGTGTAACAGATTaGAAGCAGGTCCTGCCAGGCCCGCTTGGGAGCTGT +
Preference number: 6 (lower is better)
Translates to: CRAVAHPCCVTD*KQVLPGPLGSC
Trigger: ACAGCTCCCAAGCGGGCCTGGCAGGACCTGCTTCCAATCTGTTACACAGCATGGGTGTGCGACTGCCCGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 72 bp TTGTCGGGCAGTCGCACACCCATGCTGTGTAACAGATaGGAAGCAGGTCCTGCCAGGCCCGCTTGGGAGCTG +
Preference number: 6 (lower is better)
Translates to: LSGSRTPMLCNR*EAGPARPAWEL
Trigger: CAGCTCCCAAGCGGGCCTGGCAGGACCTGCTTCCAATCTGTTACACAGCATGGGTGTGCGACTGCCCGACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp CTTCATGCCCAGTTCATAAGCTCGGTACTGGGGATGTaGTGGAGGTGGGAGCCCGTATCCACTCCGCCGGTC +
Preference number: 6 (lower is better)
Translates to: LHAQFISSVLGM*WRWEPVSTPPV
Trigger: GACCGGCGGAGTGGATACGGGCTCCCACCTCCATCACATCCCCAGTACCGAGCTTATGAACTGGGCATGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp GAGCACCGCCACAATGCCGGCTGGAAGGAAGCAGTGTaGTCGATGGAGGGATGCTTCGACCCTTTCTGGGTA +
Preference number: 6 (lower is better)
Translates to: EHRHNAGWKEAV*SMEGCFDPFWV
Trigger: TACCCAGAAAGGGTCGAAGCATCCCTCCATCGAGCACACTGCTTCCTTCCAGCCGGCATTGTGGCGGTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp GTGCCAGTTCCTGGTCCATCCGGGCCATGTAGGACTTaGGGCTGCCAAGGGCTCCTTTCAGAGACTCAGACT +
Preference number: 6 (lower is better)
Translates to: VPVPGPSGPCRT*GCQGLLSETQT
Trigger: AGTCTGAGTCTCTGAAAGGAGCCCTTGGCAGCCTCAAGTCCTACATGGCCCGGATGGACCAGGAACTGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp GCTCCTCCTTCTGGGGACCGGGCTGGGATTCTTTTCTaGCCGCAGCATCTTGCAGTAGCTGGTCTAACTGGT +
Preference number: 6 (lower is better)
Translates to: APPSGDRAGILF*PQHLAVAGLTG
Trigger: ACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCAGCCCGGTCCCCAGAAGGAGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp GGTTGTGATCAGCGTTGTCGGGCAGTCGCACACCCATaGTGTGTAACAGATTGGAAGCAGGTCCTGCCAGGC +
Preference number: 6 (lower is better)
Translates to: GCDQRCRAVAHP*CVTDWKQVLPG
Trigger: GCCTGGCAGGACCTGCTTCCAATCTGTTACACAGCATGGGTGTGCGACTGCCCGACAACGCTGATCACAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 72 bp GCTTCCGAAGGGTCTCTGGGCAGCTCTGCCCCCTTGTaGCTAGACACTTTGGAGATGAAGGCCTTCATGCTG +
Preference number: 6 (lower is better)
Translates to: ASEGSLGSSAPL*LDTLEMKAFML
Trigger: CAGCATGAAGGCCTTCATCTCCAAAGTGTCTAGCCACAAGGGGGCAGAGCTGCCCAGAGACCCTTCGGAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 90 bp TCCGAAGGGTCTCTGGGCAGCTCTGCCCCCTTGTGGCTAGACACTTaGGAGATGAAGGCCTTCATGCTGTCTGAGACCTGCGCTACATCA +
Preference number: 6 (lower is better)
Translates to: SEGSLGSSAPLWLDT*EMKAFMLSETCATS
Trigger: TGATGTAGCGCAGGTCTCAGACAGCATGAAGGCCTTCATCTCCAAAGTGTCTAGCCACAAGGGGGCAGAGCTGCCCAGAGACCCTTCGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp GGACCGGGCTGGGATTCTTTTCTGCCCGCAGCATCTTaGAGTAGCTGGTCTAACTGGTCTGGTGAGAGGTCT +
Preference number: 6 (lower is better)
Translates to: GPGWDSFLPAAS*SSWSNWSGERS
Trigger: AGACCTCTCACCAGACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCAGCCCGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp AGTGATTGGAGCTTCCGAAGGGTCTCTGGGCAGCTCTaGCCCCTTGTGGCTAGACACTTTGGAGATGAAGGC +
Preference number: 6 (lower is better)
Translates to: SDWSFRRVSGQL*PLVARHFGDEG
Trigger: GCCTTCATCTCCAAAGTGTCTAGCCACAAGGGGGCAGAGCTGCCCAGAGACCCTTCGGAAGCTCCAATCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 72 bp TCTCTGGGCAGCTCTGCCCCCTTGTGGCTAGACACTTaGGAGATGAAGGCCTTCATGCTGTCTGAGACCTGC +
Preference number: 6 (lower is better)
Translates to: SLGSSAPLWLDT*EMKAFMLSETC
Trigger: GCAGGTCTCAGACAGCATGAAGGCCTTCATCTCCAAAGTGTCTAGCCACAAGGGGGCAGAGCTGCCCAGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp AGGCTGCCAAGGGCTCCTTTCAGAGACTCAGACTCCTaGGCCTCAAAGCCCACGTCATCATCACTGTCTACA +
Preference number: 6 (lower is better)
Translates to: RLPRAPFRDSDS*ASKPTSSSLST
Trigger: TGTAGACAGTGATGATGACGTGGGCTTTGAGGCTCAGGAGTCTGAGTCTCTGAAAGGAGCCCTTGGCAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp AGCCCGTATCCACTCCGCCGGTCTGGCACAAACTTCTaGTGTACCAGCTGTGCGTACAGACATTTCGTGAAA +
Preference number: 6 (lower is better)
Translates to: SPYPLRRSGTNF*CTSCAYRHFVK
Trigger: TTTCACGAAATGTCTGTACGCACAGCTGGTACAGCAGAAGTTTGTGCCAGACCGGCGGAGTGGATACGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 72 bp AGCTGGTCTAACTGGTCTGGTGAGAGGTCTAACCACTaGTCATCGTCCTCCGGAGGAAGGTCAGCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: SWSNWSGERSNH*SSSSGGRSASS
Trigger: AGAAGAAGCTGACCTTCCTCCGGAGGACGATGACCAGTGGTTAGACCTCTCACCAGACCAGTTAGACCAGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 72 bp TCATCGTCCTCCGGAGGAAGGTCAGCTTCTTCTGTCTaGAGCTCGGCGACGTCAAATGGCTGTGTCTGTAAC +
Preference number: 6 (lower is better)
Translates to: SSSSGGRSASSV*SSATSNGCVCN
Trigger: GTTACAGACACAGCCATTTGACGTCGCCGAGCTCAAGACAGAAGAAGCTGACCTTCCTCCGGAGGACGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 72 bp TGGCCCAGAGCGGTGAGGCAGTCACAAGAGACTTCCTaGAGTCAGAAAAATGTGGGCTACATTTGGAGCACA +
Preference number: 6 (lower is better)
Translates to: WPRAVRQSQETS*SQKNVGYIWST
Trigger: TGTGCTCCAAATGTAGCCCACATTTTTCTGACTCCAGGAAGTCTCTTGTGACTGCCTCACCGCTCTGGGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CCA 72 bp TGGGATTCTTTTCTGCCCGCAGCATCTTGCAGTAGCTaGTCTAACTGGTCTGGTGAGAGGTCTAACCACTGG +
Preference number: 6 (lower is better)
Translates to: WDSFLPAASCSS*SNWSGERSNHW
Trigger: CCAGTGGTTAGACCTCTCACCAGACCAGTTAGACCAGCTACTGCAAGATGCTGCGGGCAGAAAAGAATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 90 bp CAGCGCAATCTCCTGCACCAGAATCTTCTTCATCTGAATTGTCATTaGCAGTGTGGGATGGAGGGTCCTTATTCAATCGCTCCCGCGTGG +
Preference number: 6 (lower is better)
Translates to: QRNLLHQNLLHLNCH*QCGMEGPYSIAPAW
Trigger: CCACGCGGGAGCGATTGAATAAGGACCCTCCATCCCACACTGCAAATGACAATTCAGATGAAGAAGATTCTGGTGCAGGAGATTGCGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 90 bp CAGGTCCTGCCAGGCCCGCTTGGGAGCTGTAGGATTCCAGTATATTaGAAATCAGGTTCAGGTCTACATCCACTGCTTCAACAGCGCAAT +
Preference number: 6 (lower is better)
Translates to: QVLPGPLGSCRIPVY*KSGSGLHPLLQQRN
Trigger: ATTGCGCTGTTGAAGCAGTGGATGTAGACCTGAACCTGATTTCAAATATACTGGAATCCTACAGCTCCCAAGCGGGCCTGGCAGGACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp CCTTTTCAGACTTTCAAGGAAGCTGGCCCAGAGCGGTaGGGCAGTCACAAGAGACTTCCTGGAGTCAGAAAA +
Preference number: 6 (lower is better)
Translates to: PFQTFKEAGPER*GSHKRLPGVRK
Trigger: TTTTCTGACTCCAGGAAGTCTCTTGTGACTGCCTCACCGCTCTGGGCCAGCTTCCTTGAAAGTCTGAAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp GCTAGACACTTTGGAGATGAAGGCCTTCATGCTGTCTaGGACCTGCGCTACATCATAGTTCTGCAGCTCCTC +
Preference number: 6 (lower is better)
Translates to: ARHFGDEGLHAV*DLRYIIVLQLL
Trigger: GAGGAGCTGCAGAACTATGATGTAGCGCAGGTCTCAGACAGCATGAAGGCCTTCATCTCCAAAGTGTCTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp CCGAGGCCATTATTCGTGTTTCAGGCAAAAATGTCTTaGAGACACGACAGGCTCTTAGGTCAATGGGGTCCC +
Preference number: 6 (lower is better)
Translates to: PRPLFVFQAKMS*RHDRLLGQWGP
Trigger: GGGACCCCATTGACCTAAGAGCCTGTCGTGTCTTCAAGACATTTTTGCCTGAAACACGAATAATGGCCTCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS TCA 72 bp GGTGCGAACTGGGTCATTATCCGTTCAATGTACTTCTaGAGAATCTCTCTGTGCTCTTCTGTGCCTCTGGCT +
Preference number: 6 (lower is better)
Translates to: GANWVIIRSMYF*RISLCSSVPLA
Trigger: AGCCAGAGGCACAGAAGAGCACAGAGAGATTCTTCAGAAGTACATTGAACGGATAATGACCCAGTTCGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022344.4
ENSMUST00000223955.2
CDS CCA 72 bp TCTGTGCCTCTGGCTTTATCTGGTATCAGGAAGAGATaGTACTCCACAGCATCCTCTACCATTGCGAGCTTT +
Preference number: 6 (lower is better)
Translates to: SVPLALSGIRKR*YSTASSTIASF
Trigger: AAAGCTCGCAATGGTAGAGGATGCTGTGGAGTACCATCTCTTCCTGATACCAGATAAAGCCAGAGGCACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022344.4
ENSMUST00000223955.2
CDS CAA 72 bp ACCGAGGCCATTATTCGTGTTTCAGGCAAAAATGTCTaGAAGACACGACAGGCTCTTAGGTCAATGGGGTCC +
Preference number: 6 (lower is better)
Translates to: TEAIIRVSGKNV*KTRQALRSMGS
Trigger: GGACCCCATTGACCTAAGAGCCTGTCGTGTCTTCAAGACATTTTTGCCTGAAACACGAATAATGGCCTCGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 72 bp CCAGGCCCGCTTGGGAGCTGTAGGATTCCAGTATATTaGAAATCAGGTTCAGGTCTACATCCACTGCTTCAA +
Preference number: 6 (lower is better)
Translates to: PGPLGSCRIPVY*KSGSGLHPLLQ
Trigger: TTGAAGCAGTGGATGTAGACCTGAACCTGATTTCAAATATACTGGAATCCTACAGCTCCCAAGCGGGCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 90 bp GCTTCAACAGCGCAATCTCCTGCACCAGAATCTTCTTCATCTGAATaGTCATTTGCAGTGTGGGATGGAGGGTCCTTATTCAATCGCTCC +
Preference number: 6 (lower is better)
Translates to: ASTAQSPAPESSSSE*SFAVWDGGSLFNRS
Trigger: GGAGCGATTGAATAAGGACCCTCCATCCCACACTGCAAATGACAATTCAGATGAAGAAGATTCTGGTGCAGGAGATTGCGCTGTTGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS GCA 72 bp AGGCTGATTCTGCCAGATATAAGGGACCAGTATGGGTaGGAACTGGGTCATTATCCGTTCAATGTACTTCTG +
Preference number: 6 (lower is better)
Translates to: RLILPDIRDQYG*ELGHYPFNVLL
Trigger: CAGAAGTACATTGAACGGATAATGACCCAGTTCGCACCCATACTGGTCCCTTATATCTGGCAGAATCAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022344.4
ENSMUST00000223955.2
CDS CAA 72 bp AAGTCGGCCGCTTCTATTAACAGGAACTCACCATCATaGTCTTCAACCCTGGCCACTAACTCTGGAAATTCC +
Preference number: 6 (lower is better)
Translates to: KSAASINRNSPS*SSTLATNSGNS
Trigger: GGAATTTCCAGAGTTAGTGGCCAGGGTTGAAGACAATGATGGTGAGTTCCTGTTAATAGAAGCGGCCGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4
CDS CAA 72 bp GCGCAATCTCCTGCACCAGAATCTTCTTCATCTGAATaGTCATTTGCAGTGTGGGATGGAGGGTCCTTATTC +
Preference number: 6 (lower is better)
Translates to: AQSPAPESSSSE*SFAVWDGGSLF
Trigger: GAATAAGGACCCTCCATCCCACACTGCAAATGACAATTCAGATGAAGAAGATTCTGGTGCAGGAGATTGCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022344.4