RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EBI3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003206

Ensembl transcript IDs: ENSMUST00000003274.8

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGAAGTCAAGTGAATTATCCAGTGCTTCGGAGCAGCCCAGTACATaGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCACCCT +
Preference number: 1 (lower is better)
Translates to: KKSSELSSASEQPST*KVSIQTQDRPPCHP
Trigger: AGGGTGGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCCGAAGCACTGGATAATTCACTTGACTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
3UTR TCA 90 bp CCCGCACCGGCAGAAGAAGAAAGATCATCCCACAGGGTTGGAAATTaGGGTCTGAAGAAGTCAAGTGAATTATCCAGTGCTTCGGAGCAG +
Preference number: 1 (lower is better)
Translates to: PAPAEEERSSHRVGN*GLKKSSELSSASEQ
Trigger: CTGCTCCGAAGCACTGGATAATTCACTTGACTTCTTCAGACCTCAATTTCCAACCCTGTGGGATGATCTTTCTTCTTCTGCCGGTGCGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
3UTR TCA 90 bp CGGCAGAAGAAGAAAGATCATCCCACAGGGTTGGAAATTGAGGTCTaGAGAAGTCAAGTGAATTATCCAGTGCTTCGGAGCAGCCCAGTA +
Preference number: 1 (lower is better)
Translates to: RQKKKDHPTGLEIEV*RSQVNYPVLRSSPV
Trigger: TACTGGGCTGCTCCGAAGCACTGGATAATTCACTTGACTTCTTCAGACCTCAATTTCCAACCCTGTGGGATGATCTTTCTTCTTCTGCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
3UTR CCA 72 bp AGTGAATTATCCAGTGCTTCGGAGCAGCCCAGTACATaGAAAGTCAGTATTCAGACTCAGGACAGGCCACCC +
Preference number: 3 (lower is better)
Translates to: SELSSASEQPST*KVSIQTQDRPP
Trigger: GGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCCGAAGCACTGGATAATTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
3UTR TCA 72 bp AAGAAAGATCATCCCACAGGGTTGGAAATTGAGGTCTaGAGAAGTCAAGTGAATTATCCAGTGCTTCGGAGC +
Preference number: 3 (lower is better)
Translates to: KKDHPTGLEIEV*RSQVNYPVLRS
Trigger: GCTCCGAAGCACTGGATAATTCACTTGACTTCTTCAGACCTCAATTTCCAACCCTGTGGGATGATCTTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
3UTR TCA 72 bp GCAGAAGAAGAAAGATCATCCCACAGGGTTGGAAATTaGGGTCTGAAGAAGTCAAGTGAATTATCCAGTGCT +
Preference number: 3 (lower is better)
Translates to: AEEERSSHRVGN*GLKKSSELSSA
Trigger: AGCACTGGATAATTCACTTGACTTCTTCAGACCTCAATTTCCAACCCTGTGGGATGATCTTTCTTCTTCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR GCA 90 bp TCGGAGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCCAGGGCTGGCTCTGCTaGTGGGTGGCCACACCGAGC +
Preference number: 4 (lower is better)
Translates to: SEQPSTWKVSIQTQDRPPQGWLC*WVATPS
Trigger: GCTCGGTGTGGCCACCCAGCAGCAGAGCCAGCCCTG...GGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR GCA 90 bp GGAGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCAGGAAGCAGGGGGATaGCAGAGCACCTGCAGGCGC +
Preference number: 4 (lower is better)
Translates to: GAAQYMESQYSDSGQATLQEAGG*QSTCRR
Trigger: GCGCCTGCAGGTGCTCTGGCATCCCCCTGCTTCCTG...CAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CCA 90 bp CGGAGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTCGTTGTAGGCAGGGCTaGCTCTGCTGCTGGGTGGCC +
Preference number: 4 (lower is better)
Translates to: RSSPVHGKSVFRLRTGHPRCRQG*LCCWVA
Trigger: GGCCACCCAGCAGCAGAGCCAGCCCTGCCTACAACG...AGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CCA 90 bp AGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCGGCTCTGCTGCTGGGTaGCCACACCGAGCCTGTAAG +
Preference number: 4 (lower is better)
Translates to: SSPVHGKSVFRLRTGHPAGSAAG*PHRACK
Trigger: CTTACAGGCTCGGTGTGGCCACCCAGCAGCAGAGCC...GGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CCA 90 bp GGAGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGGTGGAGTTGGGAGCCTaGAGAGGAGTCCAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: GAAQYMESQYSDSGQATLVELGA*RGVQEQ
Trigger: CTGCTCCTGGACTCCTCTCCAGGCTCCCAACTCCAC...CAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CCA 90 bp TCGGAGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCAGGACGTGGATCTGGTaGAGTTGGGAGCCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: SEQPSTWKVSIQTQDRPPRTWIW*SWEPGE
Trigger: CTCTCCAGGCTCCCAACTCCACCAGATCCACGTCCT...GGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR TCA 90 bp CGGAGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTCTGGGTGCACTGCAGTaGCATTTAGCATGTAGGGCA +
Preference number: 4 (lower is better)
Translates to: RSSPVHGKSVFRLRTGHPLGALQ*HLACRA
Trigger: TGCCCTACATGCTAAATGTCACTGCAGTGCACCCAG...AGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR GCA 90 bp GAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCACCCTCAAGTAGACGAGGTGCACTTTCTACTTaGCCAGGGAGGCTCCAGTCA +
Preference number: 4 (lower is better)
Translates to: ESQYSDSGQATLPPSSRRGALST*PGRLQS
Trigger: TGACTGGAGCCTCCCTGGGCAAGTAGAAAGTGCACC...TCGTCTACTTGAGGGTGGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CCA 90 bp GAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCACCCTCAAGTAGACGAAAGTCGTGGCTTCAATaGGTCCCACCTGGCGGAAGT +
Preference number: 4 (lower is better)
Translates to: ESQYSDSGQATLPPSSRRKSWLQ*VPPGGS
Trigger: ACTTCCGCCAGGTGGGACCCATTGAAGCCACGACTT...TCGTCTACTTGAGGGTGGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR GCA 90 bp CAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCACCCTCACGAGAAGCATGGCATTaGACTCTGGGCTGGCTTAGA +
Preference number: 4 (lower is better)
Translates to: QYMESQYSDSGQATLPPSREAWH*TLGWLR
Trigger: TCTAAGCCAGCCCAGAGTGCAATGCCATGCTTCTCG...TGAGGGTGGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CCA 90 bp ATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCACCCTCAAGTAGAGGATACCGAGAAGCATaGCATTGCACTCTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: MESQYSDSGQATLPPSSRGYREA*HCTLGW
Trigger: CCAGCCCAGAGTGCAATGCCATGCTTCTCGGTATCC...TCTACTTGAGGGTGGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CCA 90 bp AGCAGCCCAGTACATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCGAGGCTCCAGTCACTTaGTTTCCCATAATCTGTGAG +
Preference number: 4 (lower is better)
Translates to: SSPVHGKSVFRLRTGHPAEAPVT*FPIICE
Trigger: CTCACAGATTATGGGAAACCAAGTGACTGGAGCCTC...GGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCATGTACTGGGCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS CCA 90 bp ACCGTGGAGAACAGGTGCACGTCGGGGATGGTGCATCGGGAGGCCTaGGGGCTCCGTTGTAGGCAGGGCTGGCTCTGCTGCTGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: TVENRCTSGMVHREA*GLRCRQGWLCCWVA
Trigger: GGCCACCCAGCAGCAGAGCCAGCCCTGCCTACAACGGAGCCCCCAGGCCTCCCGATGCACCATCCCCGACGTGCACCTGTTCTCCACGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS GCA 90 bp TACTTGAGAGAGAAGATGTCCGGGAAGGGCCAGGAAGCAGGGGGATaGCAGAGCACCTGCAGGCGCTGTCCCGCTGTGCGCAGGCGCACG +
Preference number: 5 (lower is better)
Translates to: YLREKMSGKGQEAGG*QSTCRRCPAVRRRT
Trigger: CGTGCGCCTGCGCACAGCGGGACAGCGCCTGCAGGTGCTCTGGCATCCCCCTGCTTCCTGGCCCTTCCCGGACATCTTCTCTCTCAAGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS TCA 90 bp GCTGGCTCTGCTGCTGGGTGGCCACACCGAGCCTGTAAGTGGCAATaGAGGACGTGGATCTGGTGGAGTTGGGAGCCTGGAGAGGAGTCC +
Preference number: 5 (lower is better)
Translates to: AGSAAGWPHRACKWQ*RTWIWWSWEPGEES
Trigger: GGACTCCTCTCCAGGCTCCCAACTCCACCAGATCCACGTCCTTCATTGCCACTTACAGGCTCGGTGTGGCCACCCAGCAGCAGAGCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS CCA 90 bp AGAGGAGTCCAGGAGCAGTCCACGGCCACGGGATACCGAGAAGCATaGCATTGCACTCTGGGCTGGCTTAGAGCCACGAGAGCTGTTTCA +
Preference number: 5 (lower is better)
Translates to: RGVQEQSTATGYREA*HCTLGWLRATRAVS
Trigger: TGAAACAGCTCTCGTGGCTCTAAGCCAGCCCAGAGTGCAATGCCATGCTTCTCGGTATCCCGTGGCCGTGGACTGCTCCTGGACTCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS-3UTR CAA 90 bp ATGGAAAGTCAGTATTCAGACTCAGGACAGGCCACCCTGCCACCCTCAAGTAGAGTGGATCTGGTGGAGTaGGGAGCCTGGAGAGGAGTC +
Preference number: 5 (lower is better)
Translates to: MESQYSDSGQATLPPSSRVDLVE*GAWRGV
Trigger: GACTCCTCTCCAGGCTCCCAACTCCACCAGATCCAC...TCTACTTGAGGGTGGCAGGGTGGCCTGTCCTGAGTCTGAATACTGACTTTCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS TCA 90 bp CTACTTGCCCAGGGAGGCTCCAGTCACTTGGTTTCCCATAATCTGTaGGGTCCTGAGCTGACACCTGGATGCAATACTTGGCATGGGGTT +
Preference number: 5 (lower is better)
Translates to: LLAQGGSSHLVSHNL*GPELTPGCNTWHGV
Trigger: AACCCCATGCCAAGTATTGCATCCAGGTGTCAGCTCAGGACCTCACAGATTATGGGAAACCAAGTGACTGGAGCCTCCCTGGGCAAGTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS TCA 90 bp GAGGCTCCAGTCACTTGGTTTCCCATAATCTGTGAGGTCCTGAGCTaGCACCTGGATGCAATACTTGGCATGGGGTTTCGAGTTCCTGAG +
Preference number: 5 (lower is better)
Translates to: EAPVTWFPIICEVLS*HLDAILGMGFRVPE
Trigger: CTCAGGAACTCGAAACCCCATGCCAAGTATTGCATCCAGGTGTCAGCTCAGGACCTCACAGATTATGGGAAACCAAGTGACTGGAGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS CAA 90 bp CGCTGTCCCGCTGTGCGCAGGCGCACGCCTTCCGGAGGGTCCGGCTaGATGATTCGCTCAGCCACAAAGGCTAGGAGGCTGCTGCTGGCG +
Preference number: 6 (lower is better)
Translates to: RCPAVRRRTPSGGSG*MIRSATKARRLLLA
Trigger: CGCCAGCAGCAGCCTCCTAGCCTTTGTGGCTGAGCGAATCATCAAGCCGGACCCTCCGGAAGGCGTGCGCCTGCGCACAGCGGGACAGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS GCA 72 bp AGGGCACCGTGGAGAACAGGTGCACGTCGGGGATGGTaGATCGGGAGGCCTGGGGGCTCCGTTGTAGGCAGG +
Preference number: 6 (lower is better)
Translates to: RAPWRTGARRGW*IGRPGGSVVGR
Trigger: CCTGCCTACAACGGAGCCCCCAGGCCTCCCGATGCACCATCCCCGACGTGCACCTGTTCTCCACGGTGCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS CCA 72 bp AACAGGTGCACGTCGGGGATGGTGCATCGGGAGGCCTaGGGGCTCCGTTGTAGGCAGGGCTGGCTCTGCTGC +
Preference number: 6 (lower is better)
Translates to: NRCTSGMVHREA*GLRCRQGWLCC
Trigger: GCAGCAGAGCCAGCCCTGCCTACAACGGAGCCCCCAGGCCTCCCGATGCACCATCCCCGACGTGCACCTGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS CAA 72 bp GCTGTGCGCAGGCGCACGCCTTCCGGAGGGTCCGGCTaGATGATTCGCTCAGCCACAAAGGCTAGGAGGCTG +
Preference number: 6 (lower is better)
Translates to: AVRRRTPSGGSG*MIRSATKARRL
Trigger: CAGCCTCCTAGCCTTTGTGGCTGAGCGAATCATCAAGCCGGACCCTCCGGAAGGCGTGCGCCTGCGCACAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS TCA 72 bp GAGAGGCTCCTCGGCGCCGGTAGCGGAGTCGGTACTTaGGAGAGAAGATGTCCGGGAAGGGCCAGGAAGCAG +
Preference number: 6 (lower is better)
Translates to: ERLLGAGSGVGT*ERRCPGRARKQ
Trigger: CTGCTTCCTGGCCCTTCCCGGACATCTTCTCTCTCAAGTACCGACTCCGCTACCGGCGCCGAGGAGCCTCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS TCA 72 bp GCTGCTGGGTGGCCACACCGAGCCTGTAAGTGGCAATaGAGGACGTGGATCTGGTGGAGTTGGGAGCCTGGA +
Preference number: 6 (lower is better)
Translates to: AAGWPHRACKWQ*RTWIWWSWEPG
Trigger: TCCAGGCTCCCAACTCCACCAGATCCACGTCCTTCATTGCCACTTACAGGCTCGGTGTGGCCACCCAGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS TCA 72 bp CAGGGAGGCTCCAGTCACTTGGTTTCCCATAATCTGTaGGGTCCTGAGCTGACACCTGGATGCAATACTTGG +
Preference number: 6 (lower is better)
Translates to: QGGSSHLVSHNL*GPELTPGCNTW
Trigger: CCAAGTATTGCATCCAGGTGTCAGCTCAGGACCTCACAGATTATGGGAAACCAAGTGACTGGAGCCTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8
CDS TCA 72 bp GTCACTTGGTTTCCCATAATCTGTGAGGTCCTGAGCTaGCACCTGGATGCAATACTTGGCATGGGGTTTCGA +
Preference number: 6 (lower is better)
Translates to: VTWFPIICEVLS*HLDAILGMGFR
Trigger: TCGAAACCCCATGCCAAGTATTGCATCCAGGTGTCAGCTCAGGACCTCACAGATTATGGGAAACCAAGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003274.8