RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EBF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022053

Ensembl transcript IDs: ENSMUST00000022637.14, ENSMUST00000176029.2, ENSMUST00000176161.8

Found 271 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATaGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTT +
Preference number: 1 (lower is better)
Translates to: RDQDGGSLPSQICPT*PLGGATLPNKLRVL
Trigger: AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR GCA 90 bp CTGTCAATGCTTCATGAGGAACACGAGACCAAGATGGCGGCTCTCTaGCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTC +
Preference number: 1 (lower is better)
Translates to: LSMLHEEHETKMAAL*LPKSVQHGRLGAQL
Trigger: GAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR CCA 90 bp AGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTaGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCTTCATA +
Preference number: 1 (lower is better)
Translates to: RWRLSAFPNLSNMAA*GRNSPQQAQSASFI
Trigger: TATGAAGGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR CCA 90 bp TTGTGTAGTGACTGTCAATGCTTCATGAGGAACACGAGACCAAGATaGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGG +
Preference number: 1 (lower is better)
Translates to: LCSDCQCFMRNTRPR*RLSAFPNLSNMAAW
Trigger: CCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAGTCACTACACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR TCA 90 bp CTCTCCTTAGAGGTGAGATACTTCTTGCCTGAGGATGTTCAAAGCTaGGAGGGTAACATGGGGACTCCCTGCATTGCTCAGGGAGGAATG +
Preference number: 1 (lower is better)
Translates to: LSLEVRYFLPEDVQS*EGNMGTPCIAQGGM
Trigger: CATTCCTCCCTGAGCAATGCAGGGAGTCCCCATGTTACCCTCTCAGCTTTGAACATCCTCAGGCAAGAAGTATCTCACCTCTAAGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR GCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATaGTTCATGAGGAACACGAGACCAAGATGGCGGCTCTCTGCCTTC +
Preference number: 1 (lower is better)
Translates to: SALVSKRVSLCSDCQ*FMRNTRPRWRLSAF
Trigger: GAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR TCA 90 bp TTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATaGGGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATC +
Preference number: 1 (lower is better)
Translates to: LSPKGSVCVVTVNAS*GTRDQDGGSLPSQI
Trigger: GATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR CCA 90 bp CAAGAAACACAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATaGAGCTTCCTGCCTCCATGCCTGAATCGAGTACCCAAAGAGGAA +
Preference number: 1 (lower is better)
Translates to: QETQPSSPSSFSKVL*SFLPPCLNRVPKEE
Trigger: TTCCTCTTTGGGTACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTGTGTTTCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 90 bp TTTCTCATGCATTTCCGTATAGTTTGGCGCTGTGAGCCCTGCCTATaGAGGACTGTCAGCAGTGGTTATAAGCATGCCAGGTTTCTAAAA +
Preference number: 1 (lower is better)
Translates to: FLMHFRIVWRCEPCL*RTVSSGYKHARFLK
Trigger: TTTTAGAAACCTGGCATGCTTATAACCACTGCTGACAGTCCTTCATAGGCAGGGCTCACAGCGCCAAACTATACGGAAATGCATGAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR CCA 90 bp TCAAAGCCAGGTCTAAACATGCTTAATTGTATTCTGCCTCCATTGTaGGATGGTAATGCTCGTATTCCACACGTTCTTTCCCTGTACCAG +
Preference number: 1 (lower is better)
Translates to: SKPGLNMLNCILPPL*DGNARIPHVLSLYQ
Trigger: CTGGTACAGGGAAAGAACGTGTGGAATACGAGCATTACCATCCCACAATGGAGGCAGAATACAATTAAGCATGTTTAGACCTGGCTTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR CCA 90 bp ATTTCCAATGCTAGAAGCCTAACCAAGAACCCCAAGCTAAGTCATTaGAATCAAAGAGAAGACACCTGGAAAATCATGACATCCTATTGG +
Preference number: 1 (lower is better)
Translates to: ISNARSLTKNPKLSH*NQREDTWKIMTSYW
Trigger: CCAATAGGATGTCATGATTTTCCAGGTGTCTTCTCTTTGATTCCAATGACTTAGCTTGGGGTTCTTGGTTAGGCTTCTAGCATTGGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CCA 90 bp ATTACCTATAGAGATACTTGTCTGCCAAGTGGCATAAAAATAACCTaGGACCAGAATCATTTAATAGCAATGACTAAAGAGGACAGAGTG +
Preference number: 1 (lower is better)
Translates to: ITYRDTCLPSGIKIT*DQNHLIAMTKEDRV
Trigger: CACTCTGTCCTCTTTAGTCATTGCTATTAAATGATTCTGGTCCCAGGTTATTTTTATGCCACTTGGCAGACAAGTATCTCTATAGGTAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR CCA 90 bp AAAAAGAAAGAGAGAGAGAGAGAAAGAAAGAAAAAGTTCTTAGGTTaGGTTGGCTCAAAGCCAGGTCTAAACATGCTTAATTGTATTCTG +
Preference number: 1 (lower is better)
Translates to: KKKERERERKKKFLG*VGSKPGLNMLNCIL
Trigger: CAGAATACAATTAAGCATGTTTAGACCTGGCTTTGAGCCAACCCAACCTAAGAACTTTTTCTTTCTTTCTCTCTCTCTCTCTTTCTTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR CAA 90 bp AAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTaGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCTTCAT +
Preference number: 2 (lower is better)
Translates to: KMAALCLPKSVQHGR*GAQLSPTSSECFLH
Trigger: ATGAAGGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR-3UTR GCA 90 bp GCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCCCAACAAGCTCAGAGTaGTTCCTTCATAATTGGTCC +
Preference number: 2 (lower is better)
Translates to: AALCLPKSVQHGRLGAQLPTSSE*FLHNWS
Trigger: GGACCAATTATGAAGGAAGCACTCTGAGCTTGTTGG...GAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp TCCCAGGGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCTTCTCCAAAGTTCTATaGAGCTTCCTGCCTCCATGC +
Preference number: 2 (lower is better)
Translates to: SQGRLGNCTAWNTAATNLFSKVL*SFLPPC
Trigger: GCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAA...GAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCCCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR GCA 90 bp GGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCCCAATAAAGATGGCGGCTCTCTaGCTTCCCAAATCTGTCCAA +
Preference number: 2 (lower is better)
Translates to: GRLGNCTAWNTAATNLPIKMAAL*LPKSVQ
Trigger: TTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTT...TATTGGGAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTAGTTTTGTGCTATaGGAAAGCAGTTCTTCTTCC +
Preference number: 2 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQSSFVL*ESSSSS
Trigger: GGAAGAAGAACTGCTTTCTCATAGCACAAAACTACT...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTGCTCCCAGGGCAGGCTaGGTAACTGCACCGCTTGGA +
Preference number: 2 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPAPRAG*VTAPLG
Trigger: TCCAAGCGGTGCAGTTACCCAGCCTGCCCTGGGAGC...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp CATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTAATGGAGTGGTGGATTaGAGTGTTGGTGTGCTGGCG +
Preference number: 2 (lower is better)
Translates to: HPIGKPSKSRCISRTTHINGVVD*SVGVLA
Trigger: CGCCAGCACACCAACACTTCAATCCACCACTCCATT...AATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGCCAATAGGATG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp GTCCTTGGTCAGTGTAGCCATGGGGCTTTGACTCTCCTTAGAGGTGAGATACTTGTCTGGTTTCTGTGGTaGATTCTGTGGGAATCTGCA +
Preference number: 2 (lower is better)
Translates to: VLGQCSHGALTLLRGEILVWFLW*ILWESA
Trigger: TGCAGATTCCCACAGAATCCACCACAGAAACCAGAC...AAGTATCTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACACTGACCAAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp TCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATACTGTCAATGCTTCATaGGGAACACGAGACCAAGAT +
Preference number: 2 (lower is better)
Translates to: SPSSFSKVLWSFLPPCLNTVNAS*GTRDQD
Trigger: ATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAGT...ATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp TCCAGGACCACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGGAAGTGTTGGTGTGCTaGCGTTTATCTGAGTCTGGT +
Preference number: 2 (lower is better)
Translates to: SRTTHIFKSLPLLATTAREVLVC*RLSESG
Trigger: ACCAGACTCAGATAAACGCCAGCACACCAACACTTC...CCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTGGTCCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp TCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATAAGCAGATCTGGGAATaGAGTGGTGGATTGAAGTGT +
Preference number: 2 (lower is better)
Translates to: SPSSFSKVLWSFLPPCLNKQIWE*SGGLKC
Trigger: ACACTTCAATCCACCACTCCATTCCCAGATCTGCTT...ATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CAA 90 bp GGCTCAAAGCCAGGTCTAAACATGCTTAATTGTATTCTGCCTCCATaGTGGGATGGTAATGCTCGTATTCCACACGTTCTTTCCCTGTAC +
Preference number: 2 (lower is better)
Translates to: GSKPGLNMLNCILPP*WDGNARIPHVLSLY
Trigger: GTACAGGGAAAGAACGTGTGGAATACGAGCATTACCATCCCACAATGGAGGCAGAATACAATTAAGCATGTTTAGACCTGGCTTTGAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp AGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGTAACTGTCAATGCTTCATaGGGAACACGAGACCAAGAT +
Preference number: 2 (lower is better)
Translates to: SSFSKVLWSFLPPCLNRVTVNAS*GTRDQD
Trigger: ATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAGT...TACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp AGACACCTGGAAAATCATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCAGTCTGGTTTCTGTGGTaGATTCTGTGGGAATCTGCA +
Preference number: 2 (lower is better)
Translates to: RHLENHDILLASQASLDAVWFLW*ILWESA
Trigger: TGCAGATTCCCACAGAATCCACCACAGAAACCAGAC...TGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp AGTCTTCGGTGTAAAGCTACTGACAGATTCTACGATCATTCTGGAGACAGAACTCTGGGAATGGAGTGGTaGATTGAAGTGTTGGTGTGC +
Preference number: 2 (lower is better)
Translates to: SLRCKATDRFYDHSGDRTLGMEW*IEVLVC
Trigger: GCACACCAACACTTCAATCCACCACTCCATTCCCAG...AGTTCTGTCTCCAGAATGATCGTAGAATCTGTCAGTAGCTTTACACCGAAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR CAA 90 bp ATTGCTGCTCTTAGCACTGACCACGTCAATGACATTTCTCTGCTCTaGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCA +
Preference number: 2 (lower is better)
Translates to: IAALSTDHVNDISLL*SPKGSVCVVTVNAS
Trigger: TGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGAGAAATGTCATTGACGTGGTCAGTGCTAAGAGCAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR-3UTR GCA 90 bp TCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCCAACAAGCTCAGAGTaGTTCCTTCATAATTGGTCC +
Preference number: 2 (lower is better)
Translates to: SESGFCGGFCGNLHKLHIPTSSE*FLHNWS
Trigger: GGACCAATTATGAAGGAAGCACTCTGAGCTTGTTGG...AATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR GCA 90 bp TCCAGGACCACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTGTAGTGACTGTCAATaGTTCATGAGGAACACGAGA +
Preference number: 2 (lower is better)
Translates to: SRTTHIFKSLPLLATTARCSDCQ*FMRNTR
Trigger: TCTCGTGTTCCTCATGAAGCATTGACAGTCACTACA...CCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTGGTCCTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR GCA 90 bp TCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATTCAATGACATTTCTCTaGTCTTGTCTCCAAAAGGGT +
Preference number: 2 (lower is better)
Translates to: SPSSFSKVLWSFLPPCLNSMTFL*SCLQKG
Trigger: ACCCTTTTGGAGACAAGAGCAGAGAAATGTCATTGA...ATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTGTTGGAGAGAAATTCTaGAGAGTCCTTGGTCAGTGT +
Preference number: 2 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPVGEKF*RVLGQC
Trigger: ACACTGACCAAGGACTCTTCAGAATTTCTCTCCAAC...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp AGTCTTCGGTGTAAAGCTACTGACAGATTCTACGATCATTCTGGAGACAGAACTACACCTGGAAAATCATaGCATCCTATTGGCAAGCCA +
Preference number: 2 (lower is better)
Translates to: SLRCKATDRFYDHSGDRTTPGKS*HPIGKP
Trigger: TGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGT...AGTTCTGTCTCCAGAATGATCGTAGAATCTGTCAGTAGCTTTACACCGAAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp AGTCTTCGGTGTAAAGCTACTGACAGATTCTACGATCATTCTGGAGACAGAACTCTGTGGTGGATTCTGTaGGAATCTGCACAAGTTACA +
Preference number: 2 (lower is better)
Translates to: SLRCKATDRFYDHSGDRTLWWIL*ESAQVT
Trigger: TGTAACTTGTGCAGATTCCCACAGAATCCACCACAG...AGTTCTGTCTCCAGAATGATCGTAGAATCTGTCAGTAGCTTTACACCGAAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp TCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTAGTAGTTTTGTGCTATaGGAAAGCAGTTCTTCTTCC +
Preference number: 2 (lower is better)
Translates to: SESGFCGGFCGNLHKLHISSFVL*ESSSSS
Trigger: GGAAGAAGAACTGCTTTCTCATAGCACAAAACTACT...AATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR GCA 90 bp ACGTTTGTACAATTAAATAGATCTGTGGCTGCCGATGTCCTAGTGAATGGTCAACCAACAAGCTCAGAGTaGTTCCTTCATAATTGGTCC +
Preference number: 2 (lower is better)
Translates to: TFVQLNRSVAADVLVNGQPTSSE*FLHNWS
Trigger: GGACCAATTATGAAGGAAGCACTCTGAGCTTGTTGG...TTGACCATTCACTAGGACATCGGCAGCCACAGATCTATTTAATTGTACAAACGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp AAGAGTCCAAGAAACACAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAAAGTCTTCCATGCTaGTACCCTGTTTTGTTCAAT +
Preference number: 2 (lower is better)
Translates to: KSPRNTTKLPKFFLQSSMESLPC*YPVLFN
Trigger: ATTGAACAAAACAGGGTACCAGCATGGAAGACTTTC...CATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTGTGTTTCTTGGACTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp AGTCTTCGGTGTAAAGCTACTGACAGATTCTACGATCATTCTGGAGACAGAACTGTAATTCTAGCAAACTaGAGGCAAATAATCCAGTTG +
Preference number: 2 (lower is better)
Translates to: SLRCKATDRFYDHSGDRTVILAN*RQIIQL
Trigger: CAACTGGATTATTTGCCTTCAGTTTGCTAGAATTAC...AGTTCTGTCTCCAGAATGATCGTAGAATCTGTCAGTAGCTTTACACCGAAGACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR-3UTR CCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTACACATTCTTGTGCATaGGTTGATAAAGTGATGGAA +
Preference number: 2 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPTHSCA*VDKVME
Trigger: TTCCATCACTTTATCAACCCATGCACAAGAATGTGT...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR TCA 90 bp TTCAGGTTTCATTTTAAGAAAGTCTTCCATGCTGGTACCCTGTTTTGTTCAATTAGTAGTTTTGTGCTATaGGAAAGCAGTTCTTCTTCC +
Preference number: 2 (lower is better)
Translates to: FRFHFKKVFHAGTLFCSISSFVL*ESSSSS
Trigger: GGAAGAAGAACTGCTTTCTCATAGCACAAAACTACT...AATTGAACAAAACAGGGTACCAGCATGGAAGACTTTCTTAAAATGAAACCTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR CCA 72 bp GATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATaGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTC +
Preference number: 3 (lower is better)
Translates to: DGGSLPSQICPT*PLGGATLPNKL
Trigger: GAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR CCA 72 bp CTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTaGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCT +
Preference number: 3 (lower is better)
Translates to: LSAFPNLSNMAA*GRNSPQQAQSA
Trigger: AGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR GCA 72 bp CTTCATGAGGAACACGAGACCAAGATGGCGGCTCTCTaGCTTCCCAAATCTGTCCAACATGGCCGCTTGGGG +
Preference number: 3 (lower is better)
Translates to: LHEEHETKMAAL*LPKSVQHGRLG
Trigger: CCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCCTCATGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp GGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCCCAATAGAATGGAGTGGTGGATaGAAGTGTTGGTGTGCTGGC +
Preference number: 3 (lower is better)
Translates to: GRLGNCTAWNTAATNLPIEWSGG*KCWCAG
Trigger: GCCAGCACACCAACACTTCAATCCACCACTCCATTC...TATTGGGAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 72 bp GAGGAAGGACTGTGGGGCTCTGTTGGAGAGAAATTCTaGAGAGTCCTTGGTCAGTGTAGCCATGGGGCTTTG +
Preference number: 3 (lower is better)
Translates to: EEGLWGSVGEKF*RVLGQCSHGAL
Trigger: CAAAGCCCCATGGCTACACTGACCAAGGACTCTTCAGAATTTCTCTCCAACAGAGCCCCACAGTCCTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 72 bp TCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTaGATCGAGTACCCAAAGAGGAAGGACTGTGGGGCT +
Preference number: 3 (lower is better)
Translates to: SPKFYGASCLHA*IEYPKRKDCGA
Trigger: AGCCCCACAGTCCTTCCTCTTTGGGTACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 72 bp CATTTCCGTATAGTTTGGCGCTGTGAGCCCTGCCTATaGAGGACTGTCAGCAGTGGTTATAAGCATGCCAGG +
Preference number: 3 (lower is better)
Translates to: HFRIVWRCEPCL*RTVSSGYKHAR
Trigger: CCTGGCATGCTTATAACCACTGCTGACAGTCCTTCATAGGCAGGGCTCACAGCGCCAAACTATACGGAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR CCA 72 bp GACTGTCAATGCTTCATGAGGAACACGAGACCAAGATaGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATG +
Preference number: 3 (lower is better)
Translates to: DCQCFMRNTRPR*RLSAFPNLSNM
Trigger: CATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR CCA 72 bp CAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATaGAGCTTCCTGCCTCCATGCCTGAATCGAGTACCC +
Preference number: 3 (lower is better)
Translates to: QPSSPSSFSKVL*SFLPPCLNRVP
Trigger: GGGTACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 72 bp AAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATaGGGAACACGAGACCAAGATGGCGGCTCTCTGCCT +
Preference number: 3 (lower is better)
Translates to: KGSVCVVTVNAS*GTRDQDGGSLP
Trigger: AGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCCTCATGAAGCATTGACAGTCACTACACAAACTGACCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
3UTR TCA 72 bp TCTGAAGAGTCCTTGGTCAGTGTAGCCATGGGGCTTTaGCTCTCCTTAGAGGTGAGATACTTCTTGCCTGAG +
Preference number: 3 (lower is better)
Translates to: SEESLVSVAMGL*LSLEVRYFLPE
Trigger: CTCAGGCAAGAAGTATCTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACACTGACCAAGGACTCTTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR GCA 72 bp TCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATaGCTGAATCGAGTACCCAAAGAGGAAGGACTGTGG +
Preference number: 3 (lower is better)
Translates to: SFSKVLWSFLPP*LNRVPKEEGLW
Trigger: CCACAGTCCTTCCTCTTTGGGTACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CCA 72 bp CTGGGAATGGAGTGGTGGATTGAAGTGTTGGTGTGCTaGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTC +
Preference number: 3 (lower is better)
Translates to: LGMEWWIEVLVC*RLSESGFCGGF
Trigger: GAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACACCAACACTTCAATCCACCACTCCATTCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp AGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGTATGTAGCCATGGGGCTTaGACTCTCCTTAGAGGTGAG +
Preference number: 3 (lower is better)
Translates to: SSFSKVLWSFLPPCLNRVCSHGA*TLLRGE
Trigger: CTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACA...TACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 72 bp GGTTTTTCTCATGCATTTCCGTATAGTTTGGCGCTGTaGGCCCTGCCTATGAAGGACTGTCAGCAGTGGTTA +
Preference number: 3 (lower is better)
Translates to: GFSHAFPYSLAL*ALPMKDCQQWL
Trigger: TAACCACTGCTGACAGTCCTTCATAGGCAGGGCTCACAGCGCCAAACTATACGGAAATGCATGAGAAAAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp AGACACCTGGAAAATCATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATGTAGCCATGGGGCTTaGACTCTCCTTAGAGGTGAG +
Preference number: 3 (lower is better)
Translates to: RHLENHDILLASQASLDACSHGA*TLLRGE
Trigger: CTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACA...TGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp TGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCGTTCATAACAAAGAATaGCTGCTCTTAGCACTGACC +
Preference number: 3 (lower is better)
Translates to: CAGVYLSLVSVVDSVGICVHNKE*LLLALT
Trigger: GGTCAGTGCTAAGAGCAGCAATTCTTTGTTATGAAC...GCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp AGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCTACTGGTGGATTGAAGTGTaGGTGTGCTGGCGTTTATCT +
Preference number: 3 (lower is better)
Translates to: SQASLDASPGPHTFSRVYWWIEV*VCWRLS
Trigger: AGATAAACGCCAGCACACCAACACTTCAATCCACCA...GTAGACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 72 bp AACGCTTCACCAAGATTGGACACCATAAGGGATCTGTaGACTAGAAAGCAGATCTGGGAATGGAGTGGTGGA +
Preference number: 3 (lower is better)
Translates to: NASPRLDTIRDL*TRKQIWEWSGG
Trigger: TCCACCACTCCATTCCCAGATCTGCTTTCTAGTTCACAGATCCCTTATGGTGTCCAATCTTGGTGAAGCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp AGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCTACTCCAAAAGGGTCAGTTaGTGTAGTGACTGTCAATGC +
Preference number: 3 (lower is better)
Translates to: SQASLDASPGPHTFSRVYSKRVS*CSDCQC
Trigger: GCATTGACAGTCACTACACAAACTGACCCTTTTGGA...GTAGACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp GCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCGTTCATAACAAAGAATaGCTGCTCTTAGCACTGACC +
Preference number: 3 (lower is better)
Translates to: ASQASLDASPGPHTFSRVVHNKE*LLLALT
Trigger: GGTCAGTGCTAAGAGCAGCAATTCTTTGTTATGAAC...GACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTAATTCTGAAGAGTCCTaGGTCAGTGTAGCCATGGGG +
Preference number: 3 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPNSEES*VSVAMG
Trigger: CCCCATGGCTACACTGACCAAGGACTCTTCAGAATT...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR-3UTR CAA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTGACTGTGGGGCTCTGTaGGAGAGAAATTCTGAAGAG +
Preference number: 3 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPDCGAL*ERNSEE
Trigger: CTCTTCAGAATTTCTCTCCAACAGAGCCCCACAGTC...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR TCA 72 bp GTCATTGGAATCAAAGAGAAGACACCTGGAAAATCATaGCATCCTATTGGCAAGCCAAGCAAGTCTAGATGC +
Preference number: 3 (lower is better)
Translates to: VIGIKEKTPGKS*HPIGKPSKSRC
Trigger: GCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGTCTTCTCTTTGATTCCAATGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CCA 72 bp CCCAAGCTAAGTCATTGGAATCAAAGAGAAGACACCTaGAAAATCATGACATCCTATTGGCAAGCCAAGCAA +
Preference number: 3 (lower is better)
Translates to: PKLSHWNQREDT*KIMTSYWQAKQ
Trigger: TTGCTTGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGTCTTCTCTTTGATTCCAATGACTTAGCTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CCA 72 bp GCTAGAAGCCTAACCAAGAACCCCAAGCTAAGTCATTaGAATCAAAGAGAAGACACCTGGAAAATCATGACA +
Preference number: 3 (lower is better)
Translates to: ARSLTKNPKLSH*NQREDTWKIMT
Trigger: TGTCATGATTTTCCAGGTGTCTTCTCTTTGATTCCAATGACTTAGCTTGGGGTTCTTGGTTAGGCTTCTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CCA 72 bp GGTCTAAACATGCTTAATTGTATTCTGCCTCCATTGTaGGATGGTAATGCTCGTATTCCACACGTTCTTTCC +
Preference number: 3 (lower is better)
Translates to: GLNMLNCILPPL*DGNARIPHVLS
Trigger: GGAAAGAACGTGTGGAATACGAGCATTACCATCCCACAATGGAGGCAGAATACAATTAAGCATGTTTAGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCGCTGAGGCGTGGAGCTaGAGGAGTATCCCCGCGGGG +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASAEAWS*RSIPAG
Trigger: CCCCGCGGGGATACTCCTCCAGCTCCACGCCTCAGC...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCCCAGGGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCGGATGGAGGACGTGCTaGAGGATCCCACGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: SQGRLGNCTAWNTAATNLGWRTC*RIPRWG
Trigger: GCCCCACCGTGGGATCCTCCAGCACGTCCTCCATCC...GAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCCCTGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCATGGACTCTGAAATGCTaGCGCCGAGCTGGCTGCCGT +
Preference number: 4 (lower is better)
Translates to: DGGSLPSQICPTWPLGGAWTLKC*RRAGCR
Trigger: ACGGCAGCCAGCTCGGCGTCAGCATTTCAGAGTCCA...TGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCGGAGGATGGAGGACGTaGTGGAGGATCCCACGGTGG +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASGGWRT*WRIPRW
Trigger: CCACCGTGGGATCCTCCAGCACGTCCTCCATCCTCC...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCATCTGAGCCGCGACATTaGCGTCCACCACGCCGACAT +
Preference number: 4 (lower is better)
Translates to: DGGSLPSQICPTWPLGGASEPRH*RPPRRH
Trigger: ATGTCGGCGTGGTGGACGCCAATGTCGCGGCTCAGA...TGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCGTCCTGTCATGGCTCTaGATCCGTTCCCATTGCCGC +
Preference number: 4 (lower is better)
Translates to: AALCLPKSVQHGRLGAQLVLSWL*IRSHCR
Trigger: GCGGCAATGGGAACGGATTCAGAGCCATGACAGGAC...GAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTGGAGGATGGAGGACGTaGTGGAGGATCCCACGGTGG +
Preference number: 4 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLGGWRT*WRIPRW
Trigger: CCACCGTGGGATCCTCCAGCACGTCCTCCATCCTCC...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCTCTGAGCCGCGACATTaGCGTCCACCACGCCGACAT +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASSEPRH*RPPRRH
Trigger: ATGTCGGCGTGGTGGACGCCAATGTCGCGGCTCAGA...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCCCAATAGGCGATGGGGAGCCTTaGGGCCTGATGACAGGGGCA +
Preference number: 4 (lower is better)
Translates to: GRLGNCTAWNTAATNLPIGDGEP*GLMTGA
Trigger: TGCCCCTGTCATCAGGCCCCAAGGCTCCCCATCGCC...TATTGGGAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGAGCAGGCAGGCGATaGGGAGCCTTGGGGCCTGAT +
Preference number: 4 (lower is better)
Translates to: ETKMAALCLPKSVQHGRLGAGRR*GALGPD
Trigger: ATCAGGCCCCAAGGCTCCCCATCGCCTGCCTGCTCC...CAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCCCCATCATACCGCTGTaGGCTGGGGAGCTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASPIIPL*AGELER
Trigger: TCTTTCCAGCTCCCCAGCTCACAGCGGTATGATGGG...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCTCTGGCTGGGGTTCCTaGGGACACTGTACAGGGCTT +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASSGWGS*GHCTGL
Trigger: AAGCCCTGTACAGTGTCCCCAGGAACCCCAGCCAGA...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGGGATGGAGGACGTGCTaGAGGATCCCACGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWGWRTC*RIPRWG
Trigger: GCCCCACCGTGGGATCCTCCAGCACGTCCTCCATCC...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGGGCGATGGGGAGCCTTaGGGCCTGATGACAGGGGCA +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWGDGEP*GLMTGA
Trigger: TGCCCCTGTCATCAGGCCCCAAGGCTCCCCATCGCC...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCGGAGCAGGCAGGCGATaGGGAGCCTTGGGGCCTGAT +
Preference number: 4 (lower is better)
Translates to: EHETKMAALCLPKSVQHGGAGRR*GALGPD
Trigger: ATCAGGCCCCAAGGCTCCCCATCGCCTGCCTGCTCC...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGTTCCCATTGCCGCTaGAGCAGGCAGGCGATGGGG +
Preference number: 4 (lower is better)
Translates to: EHETKMAALCLPKSVQHGRSHCR*SRQAMG
Trigger: CCCCATCGCCTGCCTGCTCCAGCGGCAATGGGAACG...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGTCCGGACCCAGGACCTaGCCGAATCCATCTCGGCAC +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWSGPRT*PNPSRH
Trigger: GTGCCGAGATGGATTCGGTCAGGTCCTGGGTCCGGA...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCCCCATCATACCGCTGTaGGCTGGGGAGCTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRPIIPL*AGELER
Trigger: TCTTTCCAGCTCCCCAGCTCACAGCGGTATGATGGG...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCACCGTGCGGACACCGTTaGTGTAAAGGAGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: DGGSLPSQICPTWPLGGAPCGHR*CKGAVT
Trigger: AGTTACAGCTCCTTTACAGCAACGGTGTCCGCACGG...TGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCCTGACATACAGGTCCTaGTCCGTGCGGACACCGTTG +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRLTYRS*SVRTPL
Trigger: CAACGGTGTCCGCACGGAGCAGGACCTGTATGTCAG...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCCCCGCGGGGAGATGCTaGTTGTGTTGCGGATGTATC +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRPAGRC*LCCGCI
Trigger: GATACATCCGCAACACAAGCAGCATCTCCCCGCGGG...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCATCCCCGCGGGGAGATaGTGCTTGTGTTGCGGATGT +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRIPAGR*CLCCGC
Trigger: ACATCCGCAACACAAGCAGCATCTCCCCGCGGGGAT...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTGCTGTAGCCGTTCATaGTGTTGCTGGAGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: AALCLPKSVQHGRLGAQLCCSRS*CCWRCC
Trigger: ACAGCACCTCCAGCAACAGCATGAACGGCTACAGCA...GAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCATGGCCCCTCCTGTaGTCCAGCCTTCACTTGGGC +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWPWPLL*SSLHLG
Trigger: GCCCAAGTGAAGGCTGGACCACAGGAGGGGCCATGG...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTTCTGGCTGGGGTTCCTaGGGACACTGTACAGGGCTT +
Preference number: 4 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLSGWGS*GHCTGL
Trigger: AAGCCCTGTACAGTGTCCCCAGGAACCCCAGCCAGA...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCAGGAGAACGGGAGGATaGAGGACGTGCTGGAGGATC +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRRRTGG*RTCWRI
Trigger: GATCCTCCAGCACGTCCTCCATCCTCCCGTTCTCCT...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCACTGGGTGCCTTGGGATaGCTTTCTGCAATCTTTGGA +
Preference number: 4 (lower is better)
Translates to: DGGSLPSQICPTWPLGGALGALG*LSAIFG
Trigger: TCCAAAGATTGCAGAAAGTCATCCCAAGGCACCCAG...TGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGCTGACATACAGGTCCTaGTCCGTGCGGACACCGTTG +
Preference number: 4 (lower is better)
Translates to: ETKMAALCLPKSVQHGRLLTYRS*SVRTPL
Trigger: CAACGGTGTCCGCACGGAGCAGGACCTGTATGTCAG...CAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCTGCTGTAGCCGTTCATaGTGTTGCTGGAGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASCCSRS*CCWRCC
Trigger: ACAGCACCTCCAGCAACAGCATGAACGGCTACAGCA...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCCCTCTCAGGGTCACCTaGGTGCCTTGGGATGACTTT +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRPLRVT*VPWDDF
Trigger: AAAGTCATCCCAAGGCACCCAGGTGACCCTGAGAGG...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGTGTGAGCTGGGGAGCTaGAAAGAGCTGGAATCTGGC +
Preference number: 4 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQCELGS*KELESG
Trigger: GCCAGATTCCAGCTCTTTCCAGCTCCCCAGCTCACA...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TCCCAGGGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCTGTACTCTGATGGCATaGGGGGTTATGAGCTCACTC +
Preference number: 4 (lower is better)
Translates to: SQGRLGNCTAWNTAATNLCTLMA*GVMSSL
Trigger: GAGTGAGCTCATAACCCCTCATGCCATCAGAGTACA...GAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCCCTGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCCTGGGTGCCTTGGGATaGCTTTCTGCAATCTTTGGA +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASLGALG*LSAIFG
Trigger: TCCAAAGATTGCAGAAAGTCATCCCAAGGCACCCAG...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTGGGTCAAGCCTTCTTaGTCTCCTTCCATGCTTAGA +
Preference number: 4 (lower is better)
Translates to: AALCLPKSVQHGRLGAQLWVKPS*SPSMLR
Trigger: TCTAAGCATGGAAGGAGAGCAAGAAGGCTTGACCCA...GAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCATGCCCGGGGCTCCTTTaGAGAACTGTTTGGATTTAT +
Preference number: 4 (lower is better)
Translates to: DGGSLPSQICPTWPLGGACPGLL*RTVWIY
Trigger: ATAAATCCAAACAGTTCTGCAAAGGAGCCCCGGGCA...TGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGCCGCCTCATGTCCCTTaGGTTTCCCGCTGTTTTCAA +
Preference number: 4 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQPPHVP*VSRCFQ
Trigger: TTGAAAACAGCGGGAAACCCAAGGGACATGAGGCGG...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCGAGCTGGAATCTGGCTaGGGTTCCTGGGGACACTGT +
Preference number: 4 (lower is better)
Translates to: EHETKMAALCLPKSVQHGELESG*GSWGHC
Trigger: ACAGTGTCCCCAGGAACCCCAGCCAGATTCCAGCTC...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGCTGAGGCGTGGAGCTaGAGGAGTATCCCCGCGGGG +
Preference number: 4 (lower is better)
Translates to: PSSFSKVLWSFLPPCLNRAEAWS*RSIPAG
Trigger: CCCCGCGGGGATACTCCTCCAGCTCCACGCCTCAGC...TCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCCATATGGGGAGCCCGTaGGTGAGCCATTCAGAAATC +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRHMGSP*VSHSEI
Trigger: GATTTCTGAATGGCTCACCCACGGGCTCCCCATATG...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCTTAAGGCTGTGTAGATaGACCTGCCCGGGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: EHETKMAALCLPKSVQHGLRLCR*TCPGLL
Trigger: AAGGAGCCCCGGGCAGGTTCATCTACACAGCCTTAA...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCCAGGGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCTGCCCGGGGCTCCTTTaGAGAACTGTTTGGATTTAT +
Preference number: 4 (lower is better)
Translates to: SQGRLGNCTAWNTAATNLCPGLL*RTVWIY
Trigger: ATAAATCCAAACAGTTCTGCAAAGGAGCCCCGGGCA...GAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCCCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTGATTATTGTGTGGTGTaGCGTAGAGGGCTTCCACCA +
Preference number: 4 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLDYCVV*RRGLPP
Trigger: TGGTGGAAGCCCTCTACGGCACACCACACAATAATC...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCCCAATACCGCCTCATGTCCCTTaGGTTTCCCGCTGTTTTCAA +
Preference number: 4 (lower is better)
Translates to: GRLGNCTAWNTAATNLPIPPHVP*VSRCFQ
Trigger: TTGAAAACAGCGGGAAACCCAAGGGACATGAGGCGG...TATTGGGAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTGGGTGTAGCTTCAGATaGGTCAAGCCTTCTTGCTCT +
Preference number: 4 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLGCSFR*VKPSCS
Trigger: AGAGCAAGAAGGCTTGACCCATCTGAAGCTACACCC...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCCACTCCATACAAGCATaGTACCAAACACAACCTGGA +
Preference number: 4 (lower is better)
Translates to: AALCLPKSVQHGRLGAQLHSIQA*YQTQPG
Trigger: TCCAGGTTGTGTTTGGTACCATGCTTGTATGGAGTG...GAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGGTCACCTGGGTGCCTTaGGATGACTTTCTGCAATCT +
Preference number: 4 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQVTWVP*DDFLQS
Trigger: AGATTGCAGAAAGTCATCCCAAGGCACCCAGGTGAC...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCTCTCAGGGTCACCTaGGTGCCTTGGGATGACTTT +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWPLRVT*VPWDDF
Trigger: AAAGTCATCCCAAGGCACCCAGGTGACCCTGAGAGG...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAAGTGTTGGTGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGCGATGGGGAGCCTTaGGGCCTGATGACAGGGGCA +
Preference number: 4 (lower is better)
Translates to: EVLVCWRLSESGFCGGFCGDGEP*GLMTGA
Trigger: TGCCCCTGTCATCAGGCCCCAAGGCTCCCCATCGCC...ACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACACCAACACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAAGTGTTGGTGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTCGTTCCCATTGCCGCTaGAGCAGGCAGGCGATGGGG +
Preference number: 4 (lower is better)
Translates to: EVLVCWRLSESGFCGGFCRSHCR*SRQAMG
Trigger: CCCCATCGCCTGCCTGCTCCAGCGGCAATGGGAACG...ACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACACCAACACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GAAGTGTTGGTGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTTCCGGACCCAGGACCTaGCCGAATCCATCTCGGCAC +
Preference number: 4 (lower is better)
Translates to: EVLVCWRLSESGFCGGFCSGPRT*PNPSRH
Trigger: GTGCCGAGATGGATTCGGTCAGGTCCTGGGTCCGGA...ACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACACCAACACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTGCCCGGGGCTCCTTTaGAGAACTGTTTGGATTTAT +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRCPGLL*RTVWIY
Trigger: ATAAATCCAAACAGTTCTGCAAAGGAGCCCCGGGCA...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCACATTTACTGTTGTaGACAACACGACCTGGAACC +
Preference number: 4 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLPHLLL*TTRPGT
Trigger: GGTTCCAGGTCGTGTTGTCCACAACAGTAAATGTGG...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCCCAATAGGGTGTAGCTTCAGATaGGTCAAGCCTTCTTGCTCT +
Preference number: 4 (lower is better)
Translates to: GRLGNCTAWNTAATNLPIGCSFR*VKPSCS
Trigger: AGAGCAAGAAGGCTTGACCCATCTGAAGCTACACCC...TATTGGGAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp AGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGTAGGATGGAGGACGTGCTaGAGGATCCCACGGTGGGGC +
Preference number: 4 (lower is better)
Translates to: SSFSKVLWSFLPPCLNRVGWRTC*RIPRWG
Trigger: GCCCCACCGTGGGATCCTCCAGCACGTCCTCCATCC...TACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp AGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGTACGTTCCCATTGCCGCTaGAGCAGGCAGGCGATGGGG +
Preference number: 4 (lower is better)
Translates to: SSFSKVLWSFLPPCLNRVRSHCR*SRQAMG
Trigger: CCCCATCGCCTGCCTGCTCCAGCGGCAATGGGAACG...TACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGGCACTCTTCTGTTTaGCAGCAGGAAAAACTGAAG +
Preference number: 4 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQRHSSV*QQEKLK
Trigger: CTTCAGTTTTTCCTGCTGTCAAACAGAAGAGTGCCT...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCAAGTTTGAAGGAGGTTaGTTTTCAAAATGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: HETKMAALCLPKSVQHGRKFEGG*FSKWAR
Trigger: CCGGGCCCATTTTGAAAAGCAACCTCCTTCAAACTT...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAAGTTTGAAGGAGGTTaGTTTTCAAAATGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQKFEGG*FSKWAR
Trigger: CCGGGCCCATTTTGAAAAGCAACCTCCTTCAAACTT...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCAGTCCACGAAGGCTGTaGGCTCAATCTCCACCGGCT +
Preference number: 4 (lower is better)
Translates to: CAGVYLSLVSVVDSVGICSPRRL*AQSPPA
Trigger: AGCCGGTGGAGATTGAGCGCACAGCCTTCGTGGACT...GCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCCAGGGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCGTCTTCTCATTGCCTTaGTCTTTGTCATTCTCCACA +
Preference number: 4 (lower is better)
Translates to: SQGRLGNCTAWNTAATNLVFSLP*SLSFST
Trigger: TGTGGAGAATGACAAAGAGCAAGGCAATGAGAAGAC...GAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCCCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAACTGACATACAGGTCCTaGTCCGTGCGGACACCGTTG +
Preference number: 4 (lower is better)
Translates to: LPKFFLQSSMELPASMPELTYRS*SVRTPL
Trigger: CAACGGTGTCCGCACGGAGCAGGACCTGTATGTCAG...TTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCCAGGGCAGGCTGGGTAACTGCACCGCTTGGAACACAGCTGCCACGAATCTCAGATGCTGCTTGTGTTaGGGATGTATCCTTGGTTAT +
Preference number: 4 (lower is better)
Translates to: SQGRLGNCTAWNTAATNLRCCLC*GCILGY
Trigger: ATAACCAAGGATACATCCGCAACACAAGCAGCATCT...GAGATTCGTGGCAGCTGTGTTCCAAGCGGTGCAGTTACCCAGCCTGCCCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAACCCGCGGGGAGATGCTaGTTGTGTTGCGGATGTATC +
Preference number: 4 (lower is better)
Translates to: LPKFFLQSSMELPASMPEPAGRC*LCCGCI
Trigger: GATACATCCGCAACACAAGCAGCATCTCCCCGCGGG...TTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCAGTGAGTACCATTGTTaGTCTTCTCATTGCCTTGCT +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASSEYHC*SSHCLA
Trigger: AGCAAGGCAATGAGAAGACCAACAATGGTACTCACT...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGGGAGCAGGCAGGCGATaGGGAGCCTTGGGGCCTGAT +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMGAGRR*GALGPD
Trigger: ATCAGGCCCCAAGGCTCCCCATCGCCTGCCTGCTCC...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp CTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATTAAGGCTGTGTAGATaGACCTGCCCGGGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: LPKFFLQSSMELPASMPELRLCR*TCPGLL
Trigger: AAGGAGCCCCGGGCAGGTTCATCTACACAGCCTTAA...TTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCTTTAAAATGATGTCCTaGTTATTGTGTGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASFKMMS*LLCGVP
Trigger: CGGCACACCACACAATAATCAGGACATCATTTTAAA...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGATGCTGCTTGTGTTaGGGATGTATCCTTGGTTAT +
Preference number: 4 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQRCCLC*GCILGY
Trigger: ATAACCAAGGATACATCCGCAACACAAGCAGCATCT...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGGGAGGATGGAGGACGTaGTGGAGGATCCCACGGTGG +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMGGWRT*WRIPRW
Trigger: CCACCGTGGGATCCTCCAGCACGTCCTCCATCCTCC...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCCACATTTACTGTTGTaGACAACACGACCTGGAACC +
Preference number: 4 (lower is better)
Translates to: EHETKMAALCLPKSVQHGPHLLL*TTRPGT
Trigger: GGTTCCAGGTCGTGTTGTCCACAACAGTAAATGTGG...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGCCATGGCCCCTCCTGTaGTCCAGCCTTCACTTGGGC +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMPWPLL*SSLHLG
Trigger: GCCCAAGTGAAGGCTGGACCACAGGAGGGGCCATGG...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACTGTGAGCTGGGGAGCTaGAAAGAGCTGGAATCTGGC +
Preference number: 4 (lower is better)
Translates to: HDILLASQASLDASPGPHCELGS*KELESG
Trigger: GCCAGATTCCAGCTCTTTCCAGCTCCCCAGCTCACA...GTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGGCTGAGGCGTGGAGCTaGAGGAGTATCCCCGCGGGG +
Preference number: 4 (lower is better)
Translates to: TSSECFLHNWSIGISSFVAEAWS*RSIPAG
Trigger: CCCCGCGGGGATACTCCTCCAGCTCCACGCCTCAGC...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTGGATTTCCTCAAGTTTaGAGGAGGTTGCTTTTCAAA +
Preference number: 4 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLGFPQV*RRLLFK
Trigger: TTTGAAAAGCAACCTCCTTCAAACTTGAGGAAATCC...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp CATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTAAGGCTGTGTAGATaGACCTGCCCGGGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: HPIGKPSKSRCISRTTHILRLCR*TCPGLL
Trigger: AAGGAGCCCCGGGCAGGTTCATCTACACAGCCTTAA...AATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGCCAATAGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp AGACACCTGGAAAATCATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATGGACTCTGAAATGCTaGCGCCGAGCTGGCTGCCGT +
Preference number: 4 (lower is better)
Translates to: RHLENHDILLASQASLDAWTLKC*RRAGCR
Trigger: ACGGCAGCCAGCTCGGCGTCAGCATTTCAGAGTCCA...TGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGAGGCACTCTTCTGTTTaGCAGCAGGAAAAACTGAAG +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWRHSSV*QQEKLK
Trigger: CTTCAGTTTTTCCTGCTGTCAAACAGAAGAGTGCCT...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGTCTTCTCATTGCCTTaGTCTTTGTCATTCTCCACA +
Preference number: 4 (lower is better)
Translates to: ETKMAALCLPKSVQHGRLVFSLP*SLSFST
Trigger: TGTGGAGAATGACAAAGAGCAAGGCAATGAGAAGAC...CAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTTGTTGGTCTTCTCATTaGCTTGCTCTTTGTCATTCT +
Preference number: 4 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLCWSSH*LALCHS
Trigger: AGAATGACAAAGAGCAAGGCAATGAGAAGACCAACA...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCCCGCCTCATGTCCCTTaGGTTTCCCGCTGTTTTCAA +
Preference number: 4 (lower is better)
Translates to: CAGVYLSLVSVVDSVGICPPHVP*VSRCFQ
Trigger: TTGAAAACAGCGGGAAACCCAAGGGACATGAGGCGG...GCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTCCATGGCCCCTCCTGTaGTCCAGCCTTCACTTGGGC +
Preference number: 4 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPPWPLL*SSLHLG
Trigger: GCCCAAGTGAAGGCTGGACCACAGGAGGGGCCATGG...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp AGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGTAGAGCTGGAATCTGGCTaGGGTTCCTGGGGACACTGT +
Preference number: 4 (lower is better)
Translates to: SSFSKVLWSFLPPCLNRVELESG*GSWGHC
Trigger: ACAGTGTCCCCAGGAACCCCAGCCAGATTCCAGCTC...TACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGGAGCTGGAAAGAGCTaGAATCTGGCTGGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: PSSFSKVLWSFLPPCLNRGAGKS*NLAGVP
Trigger: AGGAACCCCAGCCAGATTCCAGCTCTTTCCAGCTCC...TCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGTTGCGGATGTATCCTTaGTTATTTCCTTGTGTGGAC +
Preference number: 4 (lower is better)
Translates to: ETKMAALCLPKSVQHGRLLRMYP*LFPCVD
Trigger: GTCCACACAAGGAAATAACCAAGGATACATCCGCAA...CAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GTCCTTGGTCAGTGTAGCCATGGGGCTTTGACTCTCCTTAGAGGTGAGATACTTCATATGGGGAGCCCGTaGGTGAGCCATTCAGAAATC +
Preference number: 4 (lower is better)
Translates to: VLGQCSHGALTLLRGEILHMGSP*VSHSEI
Trigger: GATTTCTGAATGGCTCACCCACGGGCTCCCCATATG...AAGTATCTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACACTGACCAAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCTTGTGCATGGGTTGAGGAGAACGGGAGGATaGAGGACGTGCTGGAGGATC +
Preference number: 4 (lower is better)
Translates to: CGGFCGNLHKLHILVHGLRRTGG*RTCWRI
Trigger: GATCCTCCAGCACGTCCTCCATCCTCCCGTTCTCCT...CAACCCATGCACAAGAATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGTCCGGACCCAGGACCTaGCCGAATCCATCTCGGCAC +
Preference number: 4 (lower is better)
Translates to: TSSECFLHNWSIGISSFVSGPRT*PNPSRH
Trigger: GTGCCGAGATGGATTCGGTCAGGTCCTGGGTCCGGA...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGCAGCACGCTTTAAAATaGTGTCCTGATTATTGTGTG +
Preference number: 4 (lower is better)
Translates to: ETKMAALCLPKSVQHGRLQHALK*CPDYCV
Trigger: CACACAATAATCAGGACATCATTTTAAAGCGTGCTG...CAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGGTCCTGTCATGGCTCTaGATCCGTTCCCATTGCCGC +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMVLSWL*IRSHCR
Trigger: GCGGCAATGGGAACGGATTCAGAGCCATGACAGGAC...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGAGTCCACGAAGGCTGTaGGCTCAATCTCCACCGGCT +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMSPRRL*AQSPPA
Trigger: AGCCGGTGGAGATTGAGCGCACAGCCTTCGTGGACT...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCCGTGCGGACACCGTTaGTGTAAAGGAGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: SPSSFSKVLWSFLPPCLNPCGHR*CKGAVT
Trigger: AGTTACAGCTCCTTTACAGCAACGGTGTCCGCACGG...ATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GTCCTTGGTCAGTGTAGCCATGGGGCTTTGACTCTCCTTAGAGGTGAGATACTTGATTATTGTGTGGTGTaGCGTAGAGGGCTTCCACCA +
Preference number: 4 (lower is better)
Translates to: VLGQCSHGALTLLRGEILDYCVV*RRGLPP
Trigger: TGGTGGAAGCCCTCTACGGCACACCACACAATAATC...AAGTATCTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACACTGACCAAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAAGATTATTGTGTGGTGTaGCGTAGAGGGCTTCCACCA +
Preference number: 4 (lower is better)
Translates to: LPKFFLQSSMELPASMPEDYCVV*RRGLPP
Trigger: TGGTGGAAGCCCTCTACGGCACACCACACAATAATC...TTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp AGACACCTGGAAAATCATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCACCCGCGGGGAGATGCTaGTTGTGTTGCGGATGTATC +
Preference number: 4 (lower is better)
Translates to: RHLENHDILLASQASLDAPAGRC*LCCGCI
Trigger: GATACATCCGCAACACAAGCAGCATCTCCCCGCGGG...TGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GAGTCCAAGAAACACAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAATCCCCGCGGGGAGATaGTGCTTGTGTTGCGGATGT +
Preference number: 4 (lower is better)
Translates to: ESKKHNQAPQVLSPKFYGIPAGR*CLCCGC
Trigger: ACATCCGCAACACAAGCAGCATCTCCCCGCGGGGAT...TCCATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTGTGTTTCTTGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GAAGTGTTGGTGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTTGCTGTAGCCGTTCATaGTGTTGCTGGAGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: EVLVCWRLSESGFCGGFCCCSRS*CCWRCC
Trigger: ACAGCACCTCCAGCAACAGCATGAACGGCTACAGCA...ACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACACCAACACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGAGTGAGTACCATTGTTaGTCTTCTCATTGCCTTGCT +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWSEYHC*SSHCLA
Trigger: AGCAAGGCAATGAGAAGACCAACAATGGTACTCACT...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GTCCTTGGTCAGTGTAGCCATGGGGCTTTGACTCTCCTTAGAGGTGAGATACTTGGGTGTAGCTTCAGATaGGTCAAGCCTTCTTGCTCT +
Preference number: 4 (lower is better)
Translates to: VLGQCSHGALTLLRGEILGCSFR*VKPSCS
Trigger: AGAGCAAGAAGGCTTGACCCATCTGAAGCTACACCC...AAGTATCTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACACTGACCAAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGAGCCATAGTCTATGGTaGGTTCATTTAAGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWSHSLW*VHLRLC
Trigger: ACACAGCCTTAAATGAACCCACCATAGACTATGGCT...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCTTGTGCATGGGTTGCCTCTCAGGGTCACCTaGGTGCCTTGGGATGACTTT +
Preference number: 4 (lower is better)
Translates to: CGGFCGNLHKLHILVHGLPLRVT*VPWDDF
Trigger: AAAGTCATCCCAAGGCACCCAGGTGACCCTGAGAGG...CAACCCATGCACAAGAATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GAGTCCAAGAAACACAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGAGCTGGAATCTGGCTaGGGTTCCTGGGGACACTGT +
Preference number: 4 (lower is better)
Translates to: ESKKHNQAPQVLSPKFYGELESG*GSWGHC
Trigger: ACAGTGTCCCCAGGAACCCCAGCCAGATTCCAGCTC...TCCATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTGTGTTTCTTGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGTTTAAAATGATGTCCTaGTTATTGTGTGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWFKMMS*LLCGVP
Trigger: CGGCACACCACACAATAATCAGGACATCATTTTAAA...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGTGGACTCTGAAATGCTaGCGCCGAGCTGGCTGCCGT +
Preference number: 4 (lower is better)
Translates to: TSSECFLHNWSIGISSFVWTLKC*RRAGCR
Trigger: ACGGCAGCCAGCTCGGCGTCAGCATTTCAGAGTCCA...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTGTCCTGTCATGGCTCTaGATCCGTTCCCATTGCCGC +
Preference number: 4 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPVLSWL*IRSHCR
Trigger: GCGGCAATGGGAACGGATTCAGAGCCATGACAGGAC...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp AAGAGTCCAAGAAACACAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATGATCCCCGCGGGGAGATaGTGCTTGTGTTGCGGATGT +
Preference number: 4 (lower is better)
Translates to: KSPRNTTKLPKFFLQSSMIPAGR*CLCCGC
Trigger: ACATCCGCAACACAAGCAGCATCTCCCCGCGGGGAT...CATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTGTGTTTCTTGGACTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTTCTGGCTGGGGTTCCTaGGGACACTGTACAGGGCTT +
Preference number: 4 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPSGWGS*GHCTGL
Trigger: AAGCCCTGTACAGTGTCCCCAGGAACCCCAGCCAGA...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGGGAGCTGGAAAGAGCTaGAATCTGGCTGGGGTTCCT +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMGAGKS*NLAGVP
Trigger: AGGAACCCCAGCCAGATTCCAGCTCTTTCCAGCTCC...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGCCCATCATACCGCTGTaGGCTGGGGAGCTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: TSSECFLHNWSIGISSFVPIIPL*AGELER
Trigger: TCTTTCCAGCTCCCCAGCTCACAGCGGTATGATGGG...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp AGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGTAGTCACCTGGGTGCCTTaGGATGACTTTCTGCAATCT +
Preference number: 4 (lower is better)
Translates to: SSFSKVLWSFLPPCLNRVVTWVP*DDFLQS
Trigger: AGATTGCAGAAAGTCATCCCAAGGCACCCAGGTGAC...TACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCATATGGGGAGCCCGTaGGTGAGCCATTCAGAAATC +
Preference number: 4 (lower is better)
Translates to: SESGFCGGFCGNLHKLHIHMGSP*VSHSEI
Trigger: GATTTCTGAATGGCTCACCCACGGGCTCCCCATATG...AATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGTGTACTCTGATGGCATaGGGGGTTATGAGCTCACTC +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMCTLMA*GVMSSL
Trigger: GAGTGAGCTCATAACCCCTCATGCCATCAGAGTACA...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp AGACACCTGGAAAATCATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATGTACTCTGATGGCATaGGGGGTTATGAGCTCACTC +
Preference number: 4 (lower is better)
Translates to: RHLENHDILLASQASLDACTLMA*GVMSSL
Trigger: GAGTGAGCTCATAACCCCTCATGCCATCAGAGTACA...TGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATGATTTTCCAGGTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp CCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAAAGTTTGAAGGAGGTTaGTTTTCAAAATGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: PSSFSKVLWSFLPPCLNRKFEGG*FSKWAR
Trigger: CCGGGCCCATTTTGAAAAGCAACCTCCTTCAAACTT...TCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp AGTCTTCGGTGTAAAGCTACTGACAGATTCTACGATCATTCTGGAGACAGAACTCCGTGCGGACACCGTTaGTGTAAAGGAGCTGTAACT +
Preference number: 4 (lower is better)
Translates to: SLRCKATDRFYDHSGDRTPCGHR*CKGAVT
Trigger: AGTTACAGCTCCTTTACAGCAACGGTGTCCGCACGG...AGTTCTGTCTCCAGAATGATCGTAGAATCTGTCAGTAGCTTTACACCGAAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp AGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCTACTGGGTCAAGCCTTCTTaGTCTCCTTCCATGCTTAGA +
Preference number: 4 (lower is better)
Translates to: SQASLDASPGPHTFSRVYWVKPS*SPSMLR
Trigger: TCTAAGCATGGAAGGAGAGCAAGAAGGCTTGACCCA...GTAGACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTGGTTGCTTTTCAAAATaGGCCCGGGACAGAGCAACT +
Preference number: 4 (lower is better)
Translates to: SESGFCGGFCGNLHKLHIGCFSK*ARDRAT
Trigger: AGTTGCTCTGTCCCGGGCCCATTTTGAAAAGCAACC...AATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGGGTTGCTTTTCAAAATaGGCCCGGGACAGAGCAACT +
Preference number: 4 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMGCFSK*ARDRAT
Trigger: AGTTGCTCTGTCCCGGGCCCATTTTGAAAAGCAACC...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTCACTCCATACAAGCATaGTACCAAACACAACCTGGA +
Preference number: 4 (lower is better)
Translates to: HPIGKPSKSRCISRTTHIHSIQA*YQTQPG
Trigger: TCCAGGTTGTGTTTGGTACCATGCTTGTATGGAGTG...AATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGCCAATAGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCAGCCATAGTCTATGGTaGGTTCATTTAAGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: CAGVYLSLVSVVDSVGICSHSLW*VHLRLC
Trigger: ACACAGCCTTAAATGAACCCACCATAGACTATGGCT...GCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATGGAAGCCATAGTCTATaGTGGGTTCATTTAAGGCTG +
Preference number: 4 (lower is better)
Translates to: SPSSFSKVLWSFLPPCLNGSHSL*WVHLRL
Trigger: CAGCCTTAAATGAACCCACCATAGACTATGGCTTCC...ATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGTGTGAGCTGGGGAGCTaGAAAGAGCTGGAATCTGGC +
Preference number: 4 (lower is better)
Translates to: TSSECFLHNWSIGISSFVCELGS*KELESG
Trigger: GCCAGATTCCAGCTCTTTCCAGCTCCCCAGCTCACA...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CTCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATTGCGGATGTATCCTTaGTTATTTCCTTGTGTGGAC +
Preference number: 4 (lower is better)
Translates to: LPKFFLQSSMELPASMPELRMYP*LFPCVD
Trigger: GTCCACACAAGGAAATAACCAAGGATACATCCGCAA...TTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CAA 72 bp AAAGCAGATCTGGGAATGGAGTGGTGGATTGAAGTGTaGGTGTGCTGGCGTTTATCTGAGTCTGGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: KADLGMEWWIEV*VCWRLSESGFC
Trigger: ACAGAAACCAGACTCAGATAAACGCCAGCACACCAACACTTCAATCCACCACTCCATTCCCAGATCTGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTCTGGGTGCCTTGGGATaGCTTTCTGCAATCTTTGGA +
Preference number: 4 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPLGALG*LSAIFG
Trigger: TCCAAAGATTGCAGAAAGTCATCCCAAGGCACCCAG...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GTCCTTGGTCAGTGTAGCCATGGGGCTTTGACTCTCCTTAGAGGTGAGATACTTTTTAAAATGATGTCCTaGTTATTGTGTGGTGTGCCG +
Preference number: 4 (lower is better)
Translates to: VLGQCSHGALTLLRGEILFKMMS*LLCGVP
Trigger: CGGCACACCACACAATAATCAGGACATCATTTTAAA...AAGTATCTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACACTGACCAAGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCTTGTGCATGGGTTGAGGCACTCTTCTGTTTaGCAGCAGGAAAAACTGAAG +
Preference number: 4 (lower is better)
Translates to: CGGFCGNLHKLHILVHGLRHSSV*QQEKLK
Trigger: CTTCAGTTTTTCCTGCTGTCAAACAGAAGAGTGCCT...CAACCCATGCACAAGAATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp GCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCGTCTTCTCATTGCCTTaGTCTTTGTCATTCTCCACA +
Preference number: 4 (lower is better)
Translates to: ASQASLDASPGPHTFSRVVFSLP*SLSFST
Trigger: TGTGGAGAATGACAAAGAGCAAGGCAATGAGAAGAC...GACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTGGTTGCTTTTCAAAATaGGCCCGGGACAGAGCAACT +
Preference number: 4 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPGCFSK*ARDRAT
Trigger: AGTTGCTCTGTCCCGGGCCCATTTTGAAAAGCAACC...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TCCAGGACCACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGCACTCCATACAAGCATaGTACCAAACACAACCTGGA +
Preference number: 4 (lower is better)
Translates to: SRTTHIFKSLPLLATTARHSIQA*YQTQPG
Trigger: TCCAGGTTGTGTTTGGTACCATGCTTGTATGGAGTG...CCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTGGTCCTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp CACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTTTTCCCTGTCACCTGGGTGCCTTaGGATGACTTTCTGCAATCT +
Preference number: 4 (lower is better)
Translates to: HTHFQESTTVSNYCKVFPVTWVP*DDFLQS
Trigger: AGATTGCAGAAAGTCATCCCAAGGCACCCAGGTGAC...AGGGAAAACCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CAA 72 bp CTTAGCACTGACCACGTCAATGACATTTCTCTGCTCTaGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTC +
Preference number: 4 (lower is better)
Translates to: LSTDHVNDISLL*SPKGSVCVVTV
Trigger: GACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGAGAAATGTCATTGACGTGGTCAGTGCTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp GCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCGGATTTCCTCAAGTTTaGAGGAGGTTGCTTTTCAAA +
Preference number: 4 (lower is better)
Translates to: ASQASLDASPGPHTFSRVGFPQV*RRLLFK
Trigger: TTTGAAAAGCAACCTCCTTCAAACTTGAGGAAATCC...GACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCCCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATTGTTGGTCTTCTCATTaGCTTGCTCTTTGTCATTCT +
Preference number: 4 (lower is better)
Translates to: SPSSFSKVLWSFLPPCLNCWSSH*LALCHS
Trigger: AGAATGACAAAGAGCAAGGCAATGAGAAGACCAACA...ATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp AAGAGTCCAAGAAACACAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATGTGGGTCAAGCCTTCTTaGTCTCCTTCCATGCTTAGA +
Preference number: 4 (lower is better)
Translates to: KSPRNTTKLPKFFLQSSMWVKPS*SPSMLR
Trigger: TCTAAGCATGGAAGGAGAGCAAGAAGGCTTGACCCA...CATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTGTGTTTCTTGGACTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp AGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGTAAGTGAGTACCATTGTTaGTCTTCTCATTGCCTTGCT +
Preference number: 4 (lower is better)
Translates to: SSFSKVLWSFLPPCLNRVSEYHC*SSHCLA
Trigger: AGCAAGGCAATGAGAAGACCAACAATGGTACTCACT...TACTCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCTTGTGCATGGGTTGAGCCATAGTCTATGGTaGGTTCATTTAAGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: CGGFCGNLHKLHILVHGLSHSLW*VHLRLC
Trigger: ACACAGCCTTAAATGAACCCACCATAGACTATGGCT...CAACCCATGCACAAGAATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TTCAGGTTTCATTTTAAGAAAGTCTTCCATGCTGGTACCCTGTTTTGTTCAATTAGGAGAACGGGAGGATaGAGGACGTGCTGGAGGATC +
Preference number: 4 (lower is better)
Translates to: FRFHFKKVFHAGTLFCSIRRTGG*RTCWRI
Trigger: GATCCTCCAGCACGTCCTCCATCCTCCCGTTCTCCT...AATTGAACAAAACAGGGTACCAGCATGGAAGACTTTCTTAAAATGAAACCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TCCAGGACCACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGCAGCACGCTTTAAAATaGTGTCCTGATTATTGTGTG +
Preference number: 4 (lower is better)
Translates to: SRTTHIFKSLPLLATTARQHALK*CPDYCV
Trigger: CACACAATAATCAGGACATCATTTTAAAGCGTGCTG...CCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTGGTCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp TCCAGGACCACACACATTTTCAAGAGTCTACCACTGTTAGCAACTACTGCAAGGTGTTGGTCTTCTCATTaGCTTGCTCTTTGTCATTCT +
Preference number: 4 (lower is better)
Translates to: SRTTHIFKSLPLLATTARCWSSH*LALCHS
Trigger: AGAATGACAAAGAGCAAGGCAATGAGAAGACCAACA...CCTTGCAGTAGTTGCTAACAGTGGTAGACTCTTGAAAATGTGTGTGGTCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
3UTR CAA 72 bp CCAGGTCTAAACATGCTTAATTGTATTCTGCCTCCATaGTGGGATGGTAATGCTCGTATTCCACACGTTCTT +
Preference number: 4 (lower is better)
Translates to: PGLNMLNCILPP*WDGNARIPHVL
Trigger: AAGAACGTGTGGAATACGAGCATTACCATCCCACAATGGAGGCAGAATACAATTAAGCATGTTTAGACCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
CDS-3UTR GCA 90 bp AAGAGTCCAAGAAACACAACCAAGCTCCCCAAGTTCTTTCTCCAAAGTTCTATGAGATGCTGCTTGTGTTaGGGATGTATCCTTGGTTAT +
Preference number: 4 (lower is better)
Translates to: KSPRNTTKLPKFFLQSSMRCCLC*GCILGY
Trigger: ATAACCAAGGATACATCCGCAACACAAGCAGCATCT...CATAGAACTTTGGAGAAAGAACTTGGGGAGCTTGGTTGTGTTTCTTGGACTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGGGAAGCCATAGTCTATaGTGGGTTCATTTAAGGCTG +
Preference number: 4 (lower is better)
Translates to: TSSECFLHNWSIGISSFVGSHSL*WVHLRL
Trigger: CAGCCTTAAATGAACCCACCATAGACTATGGCTTCC...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp GACCAGAATCATTTAATAGCAATGACTAAAGAGGACAGAGTGGCTTTGTTTTTACCACATTTACTGTTGTaGACAACACGACCTGGAACC +
Preference number: 4 (lower is better)
Translates to: DQNHLIAMTKEDRVALFLPHLLL*TTRPGT
Trigger: GGTTCCAGGTCGTGTTGTCCACAACAGTAAATGTGG...TAAAAACAAAGCCACTCTGTCCTCTTTAGTCATTGCTATTAAATGATTCTGGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TTCAGGTTTCATTTTAAGAAAGTCTTCCATGCTGGTACCCTGTTTTGTTCAATTGGAAGCCATAGTCTATaGTGGGTTCATTTAAGGCTG +
Preference number: 4 (lower is better)
Translates to: FRFHFKKVFHAGTLFCSIGSHSL*WVHLRL
Trigger: CAGCCTTAAATGAACCCACCATAGACTATGGCTTCC...AATTGAACAAAACAGGGTACCAGCATGGAAGACTTTCTTAAAATGAAACCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CCA 90 bp TTCAGGTTTCATTTTAAGAAAGTCTTCCATGCTGGTACCCTGTTTTGTTCAATTTTGCGGATGTATCCTTaGTTATTTCCTTGTGTGGAC +
Preference number: 4 (lower is better)
Translates to: FRFHFKKVFHAGTLFCSILRMYP*LFPCVD
Trigger: GTCCACACAAGGAAATAACCAAGGATACATCCGCAA...AATTGAACAAAACAGGGTACCAGCATGGAAGACTTTCTTAAAATGAAACCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR TCA 90 bp TTCAGGTTTCATTTTAAGAAAGTCTTCCATGCTGGTACCCTGTTTTGTTCAATTCAGCACGCTTTAAAATaGTGTCCTGATTATTGTGTG +
Preference number: 4 (lower is better)
Translates to: FRFHFKKVFHAGTLFCSIQHALK*CPDYCV
Trigger: CACACAATAATCAGGACATCATTTTAAAGCGTGCTG...AATTGAACAAAACAGGGTACCAGCATGGAAGACTTTCTTAAAATGAAACCTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS TCA 90 bp CCGCGACATTGGCGTCCACCACGCCGACATTCCGGACCCAGGACCTaGCCGAATCCATCTCGGCACCCAGCGACTTGTCTTTCAGAGCTG +
Preference number: 5 (lower is better)
Translates to: PRHWRPPRRHSGPRT*PNPSRHPATCLSEL
Trigger: CAGCTCTGAAAGACAAGTCGCTGGGTGCCGAGATGGATTCGGTCAGGTCCTGGGTCCGGAATGTCGGCGTGGTGGACGCCAATGTCGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCCTGAATCCGTTCCCATaGCCGCTGGAGCAGGCAGGC +
Preference number: 5 (lower is better)
Translates to: HETKMAALCLPKSVQHGRLNPFP*PLEQAG
Trigger: GCCTGCCTGCTCCAGCGGCAATGGGAACGGATTCAG...GCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS TCA 90 bp GGATGGAGGACGTGCTGGAGGATCCCACGGTGGGGCTTGAAGACATaGTTCCATATGGGGAGCCCGTGGGTGAGCCATTCAGAAATCCCG +
Preference number: 5 (lower is better)
Translates to: GWRTCWRIPRWGLKT*FHMGSPWVSHSEIP
Trigger: CGGGATTTCTGAATGGCTCACCCACGGGCTCCCCATATGGAATCATGTCTTCAAGCCCCACCGTGGGATCCTCCAGCACGTCCTCCATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCGCGGGGAGATGCTGCTaGTGTTGCGGATGTATCCTT +
Preference number: 5 (lower is better)
Translates to: SNMAAWGRNSPQQAQSASAGRCC*CCGCIL
Trigger: AAGGATACATCCGCAACACAAGCAGCATCTCCCCGC...GGAAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCCTGGCACACCCAGGTaGGCCATAGGAACATTGCTG +
Preference number: 5 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLPGTPR*AIGTLL
Trigger: CAGCAATGTTCCTATGGCCAACCTGGGTGTGCCAGG...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCTGAATCCGTTCCCATaGCCGCTGGAGCAGGCAGGC +
Preference number: 5 (lower is better)
Translates to: EHETKMAALCLPKSVQHGLNPFP*PLEQAG
Trigger: GCCTGCCTGCTCCAGCGGCAATGGGAACGGATTCAG...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGTCGGCACCCAGCGACTaGTCTTTCAGAGCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWSAPSD*SFRAGP
Trigger: AGGACCAGCTCTGAAAGACAAGTCGCTGGGTGCCGA...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTCTGCCCGGGGCTCCTTaGCAGAACTGTTTGGATTTA +
Preference number: 5 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLLPGAP*QNCLDL
Trigger: TAAATCCAAACAGTTCTGCAAAGGAGCCCCGGGCAG...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGCTGCCCGGGGCTCCTTaGCAGAACTGTTTGGATTTA +
Preference number: 5 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQLPGAP*QNCLDL
Trigger: TAAATCCAAACAGTTCTGCAAAGGAGCCCCGGGCAG...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCATCATTGCCTTGCTCTTaGTCATTCTCCACAAAGTCC +
Preference number: 5 (lower is better)
Translates to: DGGSLPSQICPTWPLGGASLPCS*SFSTKS
Trigger: GGACTTTGTGGAGAATGACAAAGAGCAAGGCAATGA...TGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS TCA 90 bp GATGACAGGGGCAAAGGCACTCTTCTGTTTGACAGCAGGAAAAACTaGAGAGGAGAACGGGAGGATGGAGGACGTGCTGGAGGATCCCAC +
Preference number: 5 (lower is better)
Translates to: DDRGKGTLLFDSRKN*RGEREDGGRAGGSH
Trigger: GTGGGATCCTCCAGCACGTCCTCCATCCTCCCGTTCTCCTCTTCAGTTTTTCCTGCTGTCAAACAGAAGAGTGCCTTTGCCCCTGTCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS GCA 90 bp ATTGCTGAGGCGTGGAGCTGGAGGAGTATCCCCGCGGGGAGATGCTaGTTGTGTTGCGGATGTATCCTTGGTTATTTCCTTGTGTGGACT +
Preference number: 5 (lower is better)
Translates to: IAEAWSWRSIPAGRC*LCCGCILGYFLVWT
Trigger: AGTCCACACAAGGAAATAACCAAGGATACATCCGCAACACAAGCAGCATCTCCCCGCGGGGATACTCCTCCAGCTCCACGCCTCAGCAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCAAGGCACTCTTCTGTTaGACAGCAGGAAAAACTGAA +
Preference number: 5 (lower is better)
Translates to: AALCLPKSVQHGRLGAQLKALFC*TAGKTE
Trigger: TTCAGTTTTTCCTGCTGTCAAACAGAAGAGTGCCTT...GAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CCAAATCTGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGTCATTGCCTTGCTCTTaGTCATTCTCCACAAAGTCC +
Preference number: 5 (lower is better)
Translates to: PNLSNMAAWGRNSPQQAQSLPCS*SFSTKS
Trigger: GGACTTTGTGGAGAATGACAAAGAGCAAGGCAATGA...CTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACAGATTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACCCTGGCACACCCAGGTaGGCCATAGGAACATTGCTG +
Preference number: 5 (lower is better)
Translates to: HDILLASQASLDASPGPHPGTPR*AIGTLL
Trigger: CAGCAATGTTCCTATGGCCAACCTGGGTGTGCCAGG...GTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GAAGTGTTGGTGTGCTGGCGTTTATCTGAGTCTGGTTTCTGTGGTGGATTCTGTTCGGCACCCAGCGACTaGTCTTTCAGAGCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: EVLVCWRLSESGFCGGFCSAPSD*SFRAGP
Trigger: AGGACCAGCTCTGAAAGACAAGTCGCTGGGTGCCGA...ACAGAATCCACCACAGAAACCAGACTCAGATAAACGCCAGCACACCAACACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACCGCCTCATGTCCCTaGGGTTTCCCGCTGTTTTCA +
Preference number: 5 (lower is better)
Translates to: HDILLASQASLDASPGPHTASCP*GFPLFS
Trigger: TGAAAACAGCGGGAAACCCAAGGGACATGAGGCGGT...GTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCCATCCACATTTACTGTaGTGGACAACACGACCTGGA +
Preference number: 5 (lower is better)
Translates to: EHETKMAALCLPKSVQHGHPHLL*WTTRPG
Trigger: TCCAGGTCGTGTTGTCCACAACAGTAAATGTGGATG...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGCGAGATGCTGCTTGTGTaGCGGATGTATCCTTGGTTA +
Preference number: 5 (lower is better)
Translates to: EHETKMAALCLPKSVQHGEMLLV*RMYPWL
Trigger: TAACCAAGGATACATCCGCAACACAAGCAGCATCTC...GCCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GGAACACGAGACCAAGATGGCGGCTCTCTGCCTTCCCAAATCTGTCCAACATGGGAGATGCTGCTTGTGTaGCGGATGTATCCTTGGTTA +
Preference number: 5 (lower is better)
Translates to: GTRDQDGGSLPSQICPTWEMLLV*RMYPWL
Trigger: TAACCAAGGATACATCCGCAACACAAGCAGCATCTC...CCATGTTGGACAGATTTGGGAAGGCAGAGAGCCGCCATCTTGGTCTCGTGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TGTCCAACATGGCCGCTTGGGGGCGCAACTCTCCCCAACAAGCTCAGAGTGCTTAAGGCACTCTTCTGTTaGACAGCAGGAAAAACTGAA +
Preference number: 5 (lower is better)
Translates to: CPTWPLGGATLPNKLRVLKALFC*TAGKTE
Trigger: TTCAGTTTTTCCTGCTGTCAAACAGAAGAGTGCCTT...AAGCACTCTGAGCTTGTTGGGGAGAGTTGCGCCCCCAAGCGGCCATGTTGGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCTGAATCCGTTCCCATaGCCGCTGGAGCAGGCAGGC +
Preference number: 5 (lower is better)
Translates to: SESGFCGGFCGNLHKLHILNPFP*PLEQAG
Trigger: GCCTGCCTGCTCCAGCGGCAATGGGAACGGATTCAG...AATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS TCA 90 bp GCTTGTGTTGCGGATGTATCCTTGGTTATTTCCTTGTGTGGACTCTaGAATGCTGACGCCGAGCTGGCTGCCGTAAGAGTTGATACCCAT +
Preference number: 5 (lower is better)
Translates to: ACVADVSLVISLCGL*NADAELAAVRVDTH
Trigger: ATGGGTATCAACTCTTACGGCAGCCAGCTCGGCGTCAGCATTTCAGAGTCCACACAAGGAAATAACCAAGGATACATCCGCAACACAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS GCA 90 bp TCTCACAGCATCGACTGCACATCACCTCGTGTGTCAGCAGAACTCTaGACATTTCGGGATTCTTATTCTGTCCCTCATAGGCTATGGGCT +
Preference number: 5 (lower is better)
Translates to: SHSIDCTSPRVSAEL*TFRDSYSVPHRLWA
Trigger: AGCCCATAGCCTATGAGGGACAGAATAAGAATCCCGAAATGTGCAGAGTTCTGCTGACACACGAGGTGATGTGCAGTCGATGCTGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGTCGGCACCCAGCGACTaGTCTTTCAGAGCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMSAPSD*SFRAGP
Trigger: AGGACCAGCTCTGAAAGACAAGTCGCTGGGTGCCGA...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CCAAGTTCTTTCTCCAAAGTTCTATGGAGCTTCCTGCCTCCATGCCTGAATCGAGGTGCTGTAATTAGATaGCTGAGGCGTGGAGCTGGA +
Preference number: 5 (lower is better)
Translates to: PSSFSKVLWSFLPPCLNRGAVIR*LRRGAG
Trigger: TCCAGCTCCACGCCTCAGCAATCTAATTACAGCACC...TCGATTCAGGCATGGAGGCAGGAAGCTCCATAGAACTTTGGAGAAAGAACTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CATGACATCCTATTGGCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACGGTCTTCTCATTGCCTaGCTCTTTGTCATTCTCCAC +
Preference number: 5 (lower is better)
Translates to: HDILLASQASLDASPGPHGLLIA*LFVILH
Trigger: GTGGAGAATGACAAAGAGCAAGGCAATGAGAAGACC...GTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGCCAATAGGATGTCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGACCGCCTCATGTCCCTaGGGTTTCCCGCTGTTTTCA +
Preference number: 5 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMTASCP*GFPLFS
Trigger: TGAAAACAGCGGGAAACCCAAGGGACATGAGGCGGT...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GTCCTTGGTCAGTGTAGCCATGGGGCTTTGACTCTCCTTAGAGGTGAGATACTTCATCCACATTTACTGTaGTGGACAACACGACCTGGA +
Preference number: 5 (lower is better)
Translates to: VLGQCSHGALTLLRGEILHPHLL*WTTRPG
Trigger: TCCAGGTCGTGTTGTCCACAACAGTAAATGTGGATG...AAGTATCTCACCTCTAAGGAGAGTCAAAGCCCCATGGCTACACTGACCAAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGGCGGGGAGATGCTGCTaGTGTTGCGGATGTATCCTT +
Preference number: 5 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMAGRCC*CCGCIL
Trigger: AAGGATACATCCGCAACACAAGCAGCATCTCCCCGC...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp GCAAGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCGGTCTTCTCATTGCCTaGCTCTTTGTCATTCTCCAC +
Preference number: 5 (lower is better)
Translates to: ASQASLDASPGPHTFSRVGLLIA*LFVILH
Trigger: GTGGAGAATGACAAAGAGCAAGGCAATGAGAAGACC...GACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTCTGCCCGGGGCTCCTTaGCAGAACTGTTTGGATTTA +
Preference number: 5 (lower is better)
Translates to: SESGFCGGFCGNLHKLHILPGAP*QNCLDL
Trigger: TAAATCCAAACAGTTCTGCAAAGGAGCCCCGGGCAG...AATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGACCGCCTCATGTCCCTaGGGTTTCCCGCTGTTTTCA +
Preference number: 5 (lower is better)
Translates to: TSSECFLHNWSIGISSFVTASCP*GFPLFS
Trigger: TGAAAACAGCGGGAAACCCAAGGGACATGAGGCGGT...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp AGCCAAGCAAGTCTAGATGCATCTCCAGGACCACACACATTTTCAAGAGTCTACGAGATGCTGCTTGTGTaGCGGATGTATCCTTGGTTA +
Preference number: 5 (lower is better)
Translates to: SQASLDASPGPHTFSRVYEMLLV*RMYPWL
Trigger: TAACCAAGGATACATCCGCAACACAAGCAGCATCTC...GTAGACTCTTGAAAATGTGTGTGGTCCTGGAGATGCATCTAGACTTGCTTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCTGCTCTTGTCTCCAAAAGGGTCAGTTTGTGTAGTGACTGTCAATGCTTCATGCATCCACATTTACTGTaGTGGACAACACGACCTGGA +
Preference number: 5 (lower is better)
Translates to: SALVSKRVSLCSDCQCFMHPHLL*WTTRPG
Trigger: TCCAGGTCGTGTTGTCCACAACAGTAAATGTGGATG...CATGAAGCATTGACAGTCACTACACAAACTGACCCTTTTGGAGACAAGAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGGGTGCTGTAATTAGATaGCTGAGGCGTGGAGCTGGA +
Preference number: 5 (lower is better)
Translates to: TSSECFLHNWSIGISSFVGAVIR*LRRGAG
Trigger: TCCAGCTCCACGCCTCAGCAATCTAATTACAGCACC...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp ACAAGCTCAGAGTGCTTCCTTCATAATTGGTCCATCGGAATAAGTAGTTTTGTGGGTCTTCTCATTGCCTaGCTCTTTGTCATTCTCCAC +
Preference number: 5 (lower is better)
Translates to: TSSECFLHNWSIGISSFVGLLIA*LFVILH
Trigger: GTGGAGAATGACAAAGAGCAAGGCAATGAGAAGACC...CACAAAACTACTTATTCCGATGGACCAATTATGAAGGAAGCACTCTGAGCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp CCAAGTGGCATAAAAATAACCTGGGACCAGAATCATTTAATAGCAATGACTAAAGCGGGGAGATGCTGCTaGTGTTGCGGATGTATCCTT +
Preference number: 5 (lower is better)
Translates to: PSGIKITWDQNHLIAMTKAGRCC*CCGCIL
Trigger: AAGGATACATCCGCAACACAAGCAGCATCTCCCCGC...TTTAGTCATTGCTATTAAATGATTCTGGTCCCAGGTTATTTTTATGCCACTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TCTGAGTCTGGTTTCTGTGGTGGATTCTGTGGGAATCTGCACAAGTTACACATTAAGGCACTCTTCTGTTaGACAGCAGGAAAAACTGAA +
Preference number: 5 (lower is better)
Translates to: SESGFCGGFCGNLHKLHIKALFC*TAGKTE
Trigger: TTCAGTTTTTCCTGCTGTCAAACAGAAGAGTGCCTT...AATGTGTAACTTGTGCAGATTCCCACAGAATCCACCACAGAAACCAGACTCAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022637.14
ENSMUST00000176161.8
CDS-3UTR CAA 90 bp TTCAGGTTTCATTTTAAGAAAGTCTTCCATGCTGGTACCCTGTTTTGTTCAATTGGTGCTGTAATTAGATaGCTGAGGCGTGGAGCTGGA +
Preference number: 5 (lower is better)
Translates to: FRFHFKKVFHAGTLFCSIGAVIR*LRRGAG
Trigger: TCCAGCTCCACGCCTCAGCAATCTAATTACAGCACC...AATTGAACAAAACAGGGTACCAGCATGGAAGACTTTCTTAAAATGAAACCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CCA 72 bp CCCGGGACAGAGCAACTCCGCTCTGAGCCGCGACATTaGCGTCCACCACGCCGACATTCCGGACCCAGGACC +
Preference number: 6 (lower is better)
Translates to: PGTEQLRSEPRH*RPPRRHSGPRT
Trigger: GGTCCTGGGTCCGGAATGTCGGCGTGGTGGACGCCAATGTCGCGGCTCAGAGCGGAGTTGCTCTGTCCCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CCA 72 bp GAATCCGTTCCCATTGCCGCTGGAGCAGGCAGGCGATaGGGAGCCTTGGGGCCTGATGACAGGGGCAAAGGC +
Preference number: 6 (lower is better)
Translates to: ESVPIAAGAGRR*GALGPDDRGKG
Trigger: GCCTTTGCCCCTGTCATCAGGCCCCAAGGCTCCCCATCGCCTGCCTGCTCCAGCGGCAATGGGAACGGATTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS TCA 72 bp TGGCGTCCACCACGCCGACATTCCGGACCCAGGACCTaGCCGAATCCATCTCGGCACCCAGCGACTTGTCTT +
Preference number: 6 (lower is better)
Translates to: WRPPRRHSGPRT*PNPSRHPATCL
Trigger: AAGACAAGTCGCTGGGTGCCGAGATGGATTCGGTCAGGTCCTGGGTCCGGAATGTCGGCGTGGTGGACGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CAA 72 bp ACAACAAGTCCTGTCATGGCTCTGAATCCGTTCCCATaGCCGCTGGAGCAGGCAGGCGATGGGGAGCCTTGG +
Preference number: 6 (lower is better)
Translates to: TTSPVMALNPFP*PLEQAGDGEPW
Trigger: CCAAGGCTCCCCATCGCCTGCCTGCTCCAGCGGCAATGGGAACGGATTCAGAGCCATGACAGGACTTGTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS TCA 72 bp ACGTGCTGGAGGATCCCACGGTGGGGCTTGAAGACATaGTTCCATATGGGGAGCCCGTGGGTGAGCCATTCA +
Preference number: 6 (lower is better)
Translates to: TCWRIPRWGLKT*FHMGSPWVSHS
Trigger: TGAATGGCTCACCCACGGGCTCCCCATATGGAATCATGTCTTCAAGCCCCACCGTGGGATCCTCCAGCACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CAA 72 bp GCCGTTCATGCTGTTGCTGGAGGTGCTGTAATTAGATaGCTGAGGCGTGGAGCTGGAGGAGTATCCCCGCGG +
Preference number: 6 (lower is better)
Translates to: AVHAVAGGAVIR*LRRGAGGVSPR
Trigger: CCGCGGGGATACTCCTCCAGCTCCACGCCTCAGCAATCTAATTACAGCACCTCCAGCAACAGCATGAACGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS GCA 72 bp GAGGCGTGGAGCTGGAGGAGTATCCCCGCGGGGAGATaGTGCTTGTGTTGCGGATGTATCCTTGGTTATTTC +
Preference number: 6 (lower is better)
Translates to: EAWSWRSIPAGR*CLCCGCILGYF
Trigger: GAAATAACCAAGGATACATCCGCAACACAAGCAGCATCTCCCCGCGGGGATACTCCTCCAGCTCCACGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CAA 90 bp ATTGCTGTAGCCGTTCATGCTGTTGCTGGAGGTGCTGTAATTAGATaGCTGAGGCGTGGAGCTGGAGGAGTATCCCCGCGGGGAGATGCT +
Preference number: 6 (lower is better)
Translates to: IAVAVHAVAGGAVIR*LRRGAGGVSPRGDA
Trigger: AGCATCTCCCCGCGGGGATACTCCTCCAGCTCCACGCCTCAGCAATCTAATTACAGCACCTCCAGCAACAGCATGAACGGCTACAGCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS GCA 72 bp TCCGGTTCCCGCAGCTCTTCTTCTCACAGCATCGACTaGACATCACCTCGTGTGTCAGCAGAACTCTGCACA +
Preference number: 6 (lower is better)
Translates to: SGSRSSSSHSID*TSPRVSAELCT
Trigger: TGTGCAGAGTTCTGCTGACACACGAGGTGATGTGCAGTCGATGCTGTGAGAAGAAGAGCTGCGGGAACCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS GCA 72 bp GCGTGGAGCTGGAGGAGTATCCCCGCGGGGAGATGCTaGTTGTGTTGCGGATGTATCCTTGGTTATTTCCTT +
Preference number: 6 (lower is better)
Translates to: AWSWRSIPAGRC*LCCGCILGYFL
Trigger: AAGGAAATAACCAAGGATACATCCGCAACACAAGCAGCATCTCCCCGCGGGGATACTCCTCCAGCTCCACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CCA 72 bp GCCGTAAGAGTTGATACCCATCATACCGCTGTGAGCTaGGGAGCTGGAAAGAGCTGGAATCTGGCTGGGGTT +
Preference number: 6 (lower is better)
Translates to: AVRVDTHHTAVS*GAGKSWNLAGV
Trigger: AACCCCAGCCAGATTCCAGCTCTTTCCAGCTCCCCAGCTCACAGCGGTATGATGGGTATCAACTCTTACGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CAA 72 bp CAGGACCTGACCGAATCCATCTCGGCACCCAGCGACTaGTCTTTCAGAGCTGGTCCTCTTCCTAGCGTATCT +
Preference number: 6 (lower is better)
Translates to: QDLTESISAPSD*SFRAGPLPSVS
Trigger: AGATACGCTAGGAAGAGGACCAGCTCTGAAAGACAAGTCGCTGGGTGCCGAGATGGATTCGGTCAGGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CAA 72 bp CTGGAGGAGTATCCCCGCGGGGAGATGCTGCTTGTGTaGCGGATGTATCCTTGGTTATTTCCTTGTGTGGAC +
Preference number: 6 (lower is better)
Translates to: LEEYPRGEMLLV*RMYPWLFPCVD
Trigger: GTCCACACAAGGAAATAACCAAGGATACATCCGCAACACAAGCAGCATCTCCCCGCGGGGATACTCCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS CAA 72 bp TGGAGCTGGAGGAGTATCCCCGCGGGGAGATGCTGCTaGTGTTGCGGATGTATCCTTGGTTATTTCCTTGTG +
Preference number: 6 (lower is better)
Translates to: WSWRSIPAGRCC*CCGCILGYFLV
Trigger: CACAAGGAAATAACCAAGGATACATCCGCAACACAAGCAGCATCTCCCCGCGGGGATACTCCTCCAGCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS GCA 72 bp TGGAGGAGTATCCCCGCGGGGAGATGCTGCTTGTGTTaGGGATGTATCCTTGGTTATTTCCTTGTGTGGACT +
Preference number: 6 (lower is better)
Translates to: WRSIPAGRCCLC*GCILGYFLVWT
Trigger: AGTCCACACAAGGAAATAACCAAGGATACATCCGCAACACAAGCAGCATCTCCCCGCGGGGATACTCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS TCA 72 bp GCGGATGTATCCTTGGTTATTTCCTTGTGTGGACTCTaGAATGCTGACGCCGAGCTGGCTGCCGTAAGAGTT +
Preference number: 6 (lower is better)
Translates to: ADVSLVISLCGL*NADAELAAVRV
Trigger: AACTCTTACGGCAGCCAGCTCGGCGTCAGCATTTCAGAGTCCACACAAGGAAATAACCAAGGATACATCCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8
CDS GCA 72 bp ATCGACTGCACATCACCTCGTGTGTCAGCAGAACTCTaGACATTTCGGGATTCTTATTCTGTCCCTCATAGG +
Preference number: 6 (lower is better)
Translates to: IDCTSPRVSAEL*TFRDSYSVPHR
Trigger: CCTATGAGGGACAGAATAAGAATCCCGAAATGTGCAGAGTTCTGCTGACACACGAGGTGATGTGCAGTCGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022637.14
ENSMUST00000176029.2
ENSMUST00000176161.8