Pregenerated sensors for EAR6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062148Ensembl transcript IDs: ENSMUST00000074477.7, ENSMUST00000169070.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGACAGGTTTCATGAGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGCTTGGCAGTAGCAGATaGTCGAAGGTACAAAGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: GTGFMRTGADMQRRQRNWLGSSR*SKVQSA Trigger: AGCACTTTGTACCTTCGATCATCTGCTACTGCCAAG...CCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| 3UTR CAA 90 bp | GATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTATGATCTaGGCAGTAGCAGATGATCGAAGGTACAAAGTGCTGGCACTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: DMQRRQRNWFFTTMI*AVADDRRYKVLALE Trigger: CTCCAGTGCCAGCACTTTGTACCTTCGATCATCTGCTACTGCCAAGATCATAGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| 3UTR TCA 72 bp | AAGGGAGTCAGGGACAGGTTTCATGAGGACAGGTGCTaGTATGCAGCGCAGACAGAGGAATTGGTTCTTCAC | + |
|
Preference number: 3 (lower is better) Translates to: KGVRDRFHEDRC*YAAQTEELVLH Trigger: GTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCCTGACTCCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074477.7 |
||
| 3UTR-3UTR CAA 90 bp | AGGGAGTCAGGGACAGGTTTCATGAGGACAGGTGCTGATATGCAGCGCAGACAGTTCACTACTATGATCTaGGCAGTAGCAGATGATCGA | + |
|
Preference number: 3 (lower is better) Translates to: RESGTGFMRTGADMQRRQFTTMI*AVADDR Trigger: TCGATCATCTGCTACTGCCAAGATCATAGTAGTGAA...CTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCCTGACTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| 3UTR CCA 72 bp | AGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTaGTTCTTCACTACTATGATCTTGGCAGTAGCAGAT | + |
|
Preference number: 3 (lower is better) Translates to: RTGADMQRRQRN*FFTTMILAVAD Trigger: ATCTGCTACTGCCAAGATCATAGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CCA 90 bp | AGGGAGTCAGGGACAGGTTTCATGAGGACAGGTGCTGATATGCAGCGCAGACAGAATCCCATGCAACTCTaGGCTCACAGGCAACTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: RESGTGFMRTGADMQRRQNPMQL*AHRQLC Trigger: ACACAGTTGCCTGTGAGCCCAGAGTTGCATGGGATT...CTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCCTGACTCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CCA 90 bp | AGGGAGTCAGGGACAGGTTTCATGAGGACAGGTGCTGATATGCAGCGCAGACAGCCCATCCAAGTGAACTaGAACCACTGGATAGATGGG | + |
|
Preference number: 4 (lower is better) Translates to: RESGTGFMRTGADMQRRQPIQVN*NHWIDG Trigger: CCCATCTATCCAGTGGTTCCAGTTCACTTGGATGGG...CTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCCTGACTCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CCA 90 bp | GGGACAGGTTTCATGAGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGAATCCCATGCAACTCTaGGCTCACAGGCAACTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: GTGFMRTGADMQRRQRNWNPMQL*AHRQLC Trigger: ACACAGTTGCCTGTGAGCCCAGAGTTGCATGGGATT...CCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR GCA 90 bp | ATGAGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTGATGGGACAATCCCATaGAACTCTGGGCTCACAGGC | + |
|
Preference number: 4 (lower is better) Translates to: MRTGADMQRRQRNWFFTTDGTIP*NSGLTG Trigger: GCCTGTGAGCCCAGAGTTGCATGGGATTGTCCCATC...AGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR GCA 90 bp | ACTACTATGATCTTGGCAGTAGCAGATGATCGAAGGTACAAAGTGCTGGCACTGGATGGGACAATCCCATaGAACTCTGGGCTCACAGGC | + |
|
Preference number: 4 (lower is better) Translates to: TTMILAVADDRRYKVLALDGTIP*NSGLTG Trigger: GCCTGTGAGCCCAGAGTTGCATGGGATTGTCCCATC...CAGTGCCAGCACTTTGTACCTTCGATCATCTGCTACTGCCAAGATCATAGTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CCA 90 bp | ATCTATTCAGCTGAGTTAAAGGGAGTCAGGGACAGGTTTCATGAGGACAGGTGCCCCATCCAAGTGAACTaGAACCACTGGATAGATGGG | + |
|
Preference number: 4 (lower is better) Translates to: IYSAELKGVRDRFHEDRCPIQVN*NHWIDG Trigger: CCCATCTATCCAGTGGTTCCAGTTCACTTGGATGGG...GCACCTGTCCTCATGAAACCTGTCCCTGACTCCCTTTAACTCAGCTGAATAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074477.7 |
||
| CDS-3UTR CCA 90 bp | GCTGATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTATGATCTTGGCAAGCAGGAGACAAAGTTaGGACTCAAGCAGCTTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: ADMQRRQRNWFFTTMILASRRQS*DSSSFG Trigger: TCCGAAGCTGCTTGAGTCCCAACTTTGTCTCCTGCT...TGCCAAGATCATAGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CCA 90 bp | ACTACTATGATCTTGGCAGTAGCAGATGATCGAAGGTACAAAGTGCTGGCACTGAGCAGGAGACAAAGTTaGGACTCAAGCAGCTTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: TTMILAVADDRRYKVLALSRRQS*DSSSFG Trigger: TCCGAAGCTGCTTGAGTCCCAACTTTGTCTCCTGCT...CAGTGCCAGCACTTTGTACCTTCGATCATCTGCTACTGCCAAGATCATAGTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CCA 90 bp | AGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTATGGTGAACTGGAACCACTaGATAGATGGGACAATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: RTGADMQRRQRNWFFTTMVNWNH*IDGTIP Trigger: TGGGATTGTCCCATCTATCCAGTGGTTCCAGTTCAC...CATAGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR TCA 90 bp | ATGAGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTTGTGTAGTACTCCACTaGTCCCTTTGTTTGGTATCT | + |
|
Preference number: 4 (lower is better) Translates to: MRTGADMQRRQRNWFFTTCVVLH*SLCLVS Trigger: AGATACCAAACAAAGGGATCAGTGGAGTACTACACA...AGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR GCA 90 bp | GGGACAGGTTTCATGAGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGTTACATCTTGGTCTATaGATGTTAATAGCCTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: GTGFMRTGADMQRRQRNWLHLGL*MLIACI Trigger: AATGCAGGCTATTAACATGCATAGACCAAGATGTAA...CCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| 3UTR CAA 72 bp | CGCAGACAGAGGAATTGGTTCTTCACTACTATGATCTaGGCAGTAGCAGATGATCGAAGGTACAAAGTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RRQRNWFFTTMI*AVADDRRYKVL Trigger: CAGCACTTTGTACCTTCGATCATCTGCTACTGCCAAGATCATAGTAGTGAAGAACCAATTCCTCTGTCTGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR TCA 90 bp | ACTACTATGATCTTGGCAGTAGCAGATGATCGAAGGTACAAAGTGCTGGCACTGTGTGTAGTACTCCACTaGTCCCTTTGTTTGGTATCT | + |
|
Preference number: 4 (lower is better) Translates to: TTMILAVADDRRYKVLALCVVLH*SLCLVS Trigger: AGATACCAAACAAAGGGATCAGTGGAGTACTACACA...CAGTGCCAGCACTTTGTACCTTCGATCATCTGCTACTGCCAAGATCATAGTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR GCA 90 bp | AAGATCTATTCAGCTGAGTTAAAGGGAGTCAGGGACAGGTTTCATGAGGACAGGTTACATCTTGGTCTATaGATGTTAATAGCCTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: KIYSAELKGVRDRFHEDRLHLGL*MLIACI Trigger: AATGCAGGCTATTAACATGCATAGACCAAGATGTAA...CCTGTCCTCATGAAACCTGTCCCTGACTCCCTTTAACTCAGCTGAATAGATCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074477.7 |
||
| CDS-3UTR CAA 90 bp | AGGGAGTCAGGGACAGGTTTCATGAGGACAGGTGCTGATATGCAGCGCAGACAGCAGCAGGAGACAAAGTaGGGACTCAAGCAGCTTCGG | + |
|
Preference number: 5 (lower is better) Translates to: RESGTGFMRTGADMQRRQQQETK*GLKQLR Trigger: CCGAAGCTGCTTGAGTCCCAACTTTGTCTCCTGCTG...CTGTCTGCGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCCCTGACTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CAA 90 bp | AGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTATGCAGCAGGAGACAAAGTaGGGACTCAAGCAGCTTCGG | + |
|
Preference number: 5 (lower is better) Translates to: RTGADMQRRQRNWFFTTMQQETK*GLKQLR Trigger: CCGAAGCTGCTTGAGTCCCAACTTTGTCTCCTGCTG...CATAGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CAA 90 bp | GCTGATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTATGATCTTGGCAACCACTGGGATGCGGTaGGTTTCTGGCATGAGGCAA | + |
|
Preference number: 5 (lower is better) Translates to: ADMQRRQRNWFFTTMILATTGMR*VSGMRQ Trigger: TTGCCTCATGCCAGAAACCAACCGCATCCCAGTGGT...TGCCAAGATCATAGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CAA 90 bp | AGGACAGGTGCTGATATGCAGCGCAGACAGAGGAATTGGTTCTTCACTACTATGCGCTGCACAAGCCACTaGGATTGCTACACACACCAA | + |
|
Preference number: 5 (lower is better) Translates to: RTGADMQRRQRNWFFTTMRCTSH*DCYTHQ Trigger: TTGGTGTGTGTAGCAATCCAAGTGGCTTGTGCAGCG...CATAGTAGTGAAGAACCAATTCCTCTGTCTGCGCTGCATATCAGCACCTGTCCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS CCA 90 bp | AGTGAACTGGAACCACTGGATAGATGGGACAATCCCATGCAACTCTaGGCTCACAGGCAACTGTGTAGTACTCCACTGATCCCTTTGTTT | + |
|
Preference number: 5 (lower is better) Translates to: SELEPLDRWDNPMQL*AHRQLCSTPLIPLF Trigger: AAACAAAGGGATCAGTGGAGTACTACACAGTTGCCTGTGAGCCCAGAGTTGCATGGGATTGTCCCATCTATCCAGTGGTTCCAGTTCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS-3UTR CAA 90 bp | TTCACTACTATGATCTTGGCAGTAGCAGATGATCGAAGGTACAAAGTGCTGGCAACCACTGGGATGCGGTaGGTTTCTGGCATGAGGCAA | + |
|
Preference number: 5 (lower is better) Translates to: FTTMILAVADDRRYKVLATTGMR*VSGMRQ Trigger: TTGCCTCATGCCAGAAACCAACCGCATCCCAGTGGT...TGCCAGCACTTTGTACCTTCGATCATCTGCTACTGCCAAGATCATAGTAGTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS TCA 72 bp | AACTCTGGGCTCACAGGCAACTGTGTAGTACTCCACTaGTCCCTTTGTTTGGTATCTGCATTGGGTATAATT | + |
|
Preference number: 6 (lower is better) Translates to: NSGLTGNCVVLH*SLCLVSALGII Trigger: AATTATACCCAATGCAGATACCAAACAAAGGGATCAGTGGAGTACTACACAGTTGCCTGTGAGCCCAGAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS CAA 72 bp | GCTCACAGGCAACTGTGTAGTACTCCACTGATCCCTTaGTTTGGTATCTGCATTGGGTATAATTTCTTCTCG | + |
|
Preference number: 6 (lower is better) Translates to: AHRQLCSTPLIP*FGICIGYNFFS Trigger: CGAGAAGAAATTATACCCAATGCAGATACCAAACAAAGGGATCAGTGGAGTACTACACAGTTGCCTGTGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS CAA 90 bp | GTTACAGACAGTTATAGGTACCCGAGACGAACTATTATGACAGTTTaGACTTATTTTGTCGCTGCACAAGCCACTTGGATTGCTACACAC | + |
|
Preference number: 6 (lower is better) Translates to: VTDSYRYPRRTIMTV*TYFVAAQATWIATH Trigger: GTGTGTAGCAATCCAAGTGGCTTGTGCAGCGACAAAATAAGTCAAAACTGTCATAATAGTTCGTCTCGGGTACCTATAACTGTCTGTAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS GCA 72 bp | ACGAACTATTATGACAGTTTTGACTTATTTTGTCGCTaGACAAGCCACTTGGATTGCTACACACACCAACAA | + |
|
Preference number: 6 (lower is better) Translates to: TNYYDSFDLFCR*TSHLDCYTHQQ Trigger: TTGTTGGTGTGTGTAGCAATCCAAGTGGCTTGTGCAGCGACAAAATAAGTCAAAACTGTCATAATAGTTCGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||
| CDS CAA 72 bp | AGTTATAGGTACCCGAGACGAACTATTATGACAGTTTaGACTTATTTTGTCGCTGCACAAGCCACTTGGATT | + |
|
Preference number: 6 (lower is better) Translates to: SYRYPRRTIMTV*TYFVAAQATWI Trigger: AATCCAAGTGGCTTGTGCAGCGACAAAATAAGTCAAAACTGTCATAATAGTTCGTCTCGGGTACCTATAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074477.7 ENSMUST00000169070.2 |
||