Pregenerated sensors for EAR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072596Ensembl transcript IDs: ENSMUST00000074839.7
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | TCAGCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTaGTATATGGAGCGCAGACAGAGGAATTGTCTCTTCACTACTATG | + |
Preference number: 1 (lower is better) Translates to: SAKLKGVSDRFHEDM*YMERRQRNCLFTTM Trigger: CATAGTAGTGAAGAGACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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3UTR-3UTR GCA 90 bp | AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGGCAGATGAGCAAAGGTaGAAAGTGCTGGCACTGGAG | + |
Preference number: 2 (lower is better) Translates to: KGVSDRFHEDMCYMERRQADEQR*KVLALE Trigger: CTCCAGTGCCAGCACTTTGCACCTTTGCTCATCTGC...CTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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3UTR-3UTR TCA 90 bp | AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCTCGGCAGTAGCAGATaGGCAAAGGTGCAAAGTGCT | + |
Preference number: 2 (lower is better) Translates to: SDRFHEDMCYMERRQRNCLGSSR*AKVQSA Trigger: AGCACTTTGCACCTTTGCTCATCTGCTACTGCCGAG...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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3UTR GCA 72 bp | TTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTaGTATATGGAGCGCAGACAGAGGAATTGTCTCTTC | + |
Preference number: 3 (lower is better) Translates to: LKGVSDRFHEDM*YMERRQRNCLF Trigger: GAAGAGACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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3UTR TCA 72 bp | AGAAAAGATCTATTCAGCAAAATTAAAGGGAGTAAGTaGCAGGTTTCACGAGGACATGTGCTATATGGAGCG | + |
Preference number: 3 (lower is better) Translates to: RKDLFSKIKGSK*QVSRGHVLYGA Trigger: CGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATAGATCTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS-3UTR CCA 90 bp | GTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCTGGATGGCAAACCACTaGGAAGGGGTTTGTCCCAGG | + |
Preference number: 4 (lower is better) Translates to: VTGFTRTCAIWSADRGIVWMANH*EGVCPR Trigger: CCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCA...GACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS-3UTR CCA 90 bp | AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCATGGGACTGTCCTGTaGAGTTCTGGGGTTACAGGC | + |
Preference number: 4 (lower is better) Translates to: SDRFHEDMCYMERRQRNCHGTVL*SSGVTG Trigger: GCCTGTAACCCCAGAACTCCACAGGACAGTCCCATG...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS-3UTR CCA 90 bp | AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGTGTCCTGTGGAGTTCTaGGGTTACAGGCAACTGTGT | + |
Preference number: 4 (lower is better) Translates to: KGVSDRFHEDMCYMERRQCPVEF*GYRQLC Trigger: ACACAGTTGCCTGTAACCCCAGAACTCCACAGGACA...CTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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3UTR CAA 72 bp | CGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATaGTCTCTTCACTACTATGATCTCGGCAGTAGCAGA | + |
Preference number: 4 (lower is better) Translates to: RGHVLYGAQTEE*SLHYYDLGSSR Trigger: TCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS-3UTR TCA 90 bp | ACTACTATGATCTCGGCAGTAGCAGATGAGCAAAGGTGCAAAGTGCTGGCACTGTTCTCCTCCGACTGGTaGTGTTACAGACAGTTATAC | + |
Preference number: 4 (lower is better) Translates to: TTMISAVADEQRCKVLALFSSDW*CYRQLY Trigger: GTATAACTGTCTGTAACATCACCAGTCGGAGGAGAA...CAGTGCCAGCACTTTGCACCTTTGCTCATCTGCTACTGCCGAGATCATAGTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS-3UTR GCA 90 bp | AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTTTCTTGGTTGGTATCTaGATTGGGTATAAGGTGTTC | + |
Preference number: 4 (lower is better) Translates to: SDRFHEDMCYMERRQRNCFLVGI*IGYKVF Trigger: GAACACCTTATACCCAATGCAGATACCAACCAAGAA...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CCA 90 bp | CATTGGAGGTTGGCATTATTATTGATATGCTGGATGGCAAACCACTaGGAAGGGGTTTGTCCCAGGCATGAGGCAAGCATTAGGACAAGT | + |
Preference number: 5 (lower is better) Translates to: HWRLALLLICWMANH*EGVCPRHEASIRTS Trigger: ACTTGTCCTAATGCTTGCCTCATGCCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CCA 90 bp | AGTGAACTGGAACCACTGGATACATGGGACTGTCCTGTGGAGTTCTaGGGTTACAGGCAACTGTGTAGTACTCCAATGATCTTCTTGGTT | + |
Preference number: 5 (lower is better) Translates to: SELEPLDTWDCPVEF*GYRQLCSTPMIFLV Trigger: AACCAAGAAGATCATTGGAGTACTACACAGTTGCCTGTAACCCCAGAACTCCACAGGACAGTCCCATGTATCCAGTGGTTCCAGTTCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS-3UTR CAA 90 bp | AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCAGTTTCTACTTATATaGTCACTGCACAAGCCACTT | + |
Preference number: 5 (lower is better) Translates to: SDRFHEDMCYMERRQRNCQFLLI*SLHKPL Trigger: AAGTGGCTTGTGCAGTGACAATATAAGTAGAAACTG...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS TCA 90 bp | TCTCCTCCGACTGGTGATGTTACAGACAGTTATACGTACCCGAGATaGACTATTATGACAGTTTCTACTTATATTGTCACTGCACAAGCC | + |
Preference number: 5 (lower is better) Translates to: SPPTGDVTDSYTYPR*TIMTVSTYIVTAQA Trigger: GGCTTGTGCAGTGACAATATAAGTAGAAACTGTCATAATAGTTCATCTCGGGTACGTATAACTGTCTGTAACATCACCAGTCGGAGGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS-3UTR CAA 90 bp | TATTCAGCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGCTATACTCCAATGATCTTCTaGGTTGGTATCTGCATTGGG | + |
Preference number: 5 (lower is better) Translates to: YSAKLKGVSDRFHEDMCYTPMIF*VGICIG Trigger: CCCAATGCAGATACCAACCAAGAAGATCATTGGAGT...ATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CCA 72 bp | ACATTACATTGGAGGTTGGCATTATTATTGATATGCTaGATGGCAAACCACTGGGAAGGGGTTTGTCCCAGG | + |
Preference number: 6 (lower is better) Translates to: TLHWRLALLLIC*MANHWEGVCPR Trigger: CCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS TCA 72 bp | AGTTCTGGGGTTACAGGCAACTGTGTAGTACTCCAATaGTCTTCTTGGTTGGTATCTGCATTGGGTATAAGG | + |
Preference number: 6 (lower is better) Translates to: SSGVTGNCVVLQ*SSWLVSALGIR Trigger: CCTTATACCCAATGCAGATACCAACCAAGAAGATCATTGGAGTACTACACAGTTGCCTGTAACCCCAGAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS GCA 72 bp | TCAACATTACATTGGAGGTTGGCATTATTATTGATATaGTGGATGGCAAACCACTGGGAAGGGGTTTGTCCC | + |
Preference number: 6 (lower is better) Translates to: STLHWRLALLLI*WMANHWEGVCP Trigger: GGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CAA 90 bp | TTAATACGCTGCATTTCAACATTACATTGGAGGTTGGCATTATTATaGATATGCTGGATGGCAAACCACTGGGAAGGGGTTTGTCCCAGG | + |
Preference number: 6 (lower is better) Translates to: LIRCISTLHWRLALL*ICWMANHWEGVCPR Trigger: CCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS TCA 72 bp | GCATTTCAACATTACATTGGAGGTTGGCATTATTATTaGTATGCTGGATGGCAAACCACTGGGAAGGGGTTT | + |
Preference number: 6 (lower is better) Translates to: AFQHYIGGWHYY*YAGWQTTGKGF Trigger: AAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CAA 72 bp | TGCATTTCAACATTACATTGGAGGTTGGCATTATTATaGATATGCTGGATGGCAAACCACTGGGAAGGGGTT | + |
Preference number: 6 (lower is better) Translates to: CISTLHWRLALL*ICWMANHWEGV Trigger: AACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CAA 90 bp | CTTCTAAACCTGTTAATACGCTGCATTTCAACATTACATTGGAGGTaGGCATTATTATTGATATGCTGGATGGCAAACCACTGGGAAGGG | + |
Preference number: 6 (lower is better) Translates to: LLNLLIRCISTLHWR*ALLLICWMANHWEG Trigger: CCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CCA 72 bp | ACAGTTTCTACTTATATTGTCACTGCACAAGCCACTTaGATTTCCACACACACCAACAGCATTAGCAAAACT | + |
Preference number: 6 (lower is better) Translates to: TVSTYIVTAQAT*ISTHTNSISKT Trigger: AGTTTTGCTAATGCTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAATATAAGTAGAAACTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS GCA 72 bp | ATGAACTATTATGACAGTTTCTACTTATATTGTCACTaGACAAGCCACTTGGATTTCCACACACACCAACAG | + |
Preference number: 6 (lower is better) Translates to: MNYYDSFYLYCH*TSHLDFHTHQQ Trigger: CTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAATATAAGTAGAAACTGTCATAATAGTTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CAA 72 bp | CTGTTAATACGCTGCATTTCAACATTACATTGGAGGTaGGCATTATTATTGATATGCTGGATGGCAAACCAC | + |
Preference number: 6 (lower is better) Translates to: LLIRCISTLHWR*ALLLICWMANH Trigger: GTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CAA 90 bp | ACATGTTCTTCTAAACCTGTTAATACGCTGCATTTCAACATTACATaGGAGGTTGGCATTATTATTGATATGCTGGATGGCAAACCACTG | + |
Preference number: 6 (lower is better) Translates to: TCSSKPVNTLHFNIT*EVGIIIDMLDGKPL Trigger: CAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGAAGAACATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CCA 72 bp | CTAAACCTGTTAATACGCTGCATTTCAACATTACATTaGAGGTTGGCATTATTATTGATATGCTGGATGGCA | + |
Preference number: 6 (lower is better) Translates to: LNLLIRCISTLH*RLALLLICWMA Trigger: TGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |
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CDS CAA 72 bp | TCTAAACCTGTTAATACGCTGCATTTCAACATTACATaGGAGGTTGGCATTATTATTGATATGCTGGATGGC | + |
Preference number: 6 (lower is better) Translates to: SKPVNTLHFNIT*EVGIIIDMLDG Trigger: GCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074839.7 |