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Pregenerated sensors for EAR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000072596

Ensembl transcript IDs: ENSMUST00000074839.7

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCAGCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTaGTATATGGAGCGCAGACAGAGGAATTGTCTCTTCACTACTATG +
Preference number: 1 (lower is better)
Translates to: SAKLKGVSDRFHEDM*YMERRQRNCLFTTM
Trigger: CATAGTAGTGAAGAGACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
3UTR-3UTR GCA 90 bp AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGGCAGATGAGCAAAGGTaGAAAGTGCTGGCACTGGAG +
Preference number: 2 (lower is better)
Translates to: KGVSDRFHEDMCYMERRQADEQR*KVLALE
Trigger: CTCCAGTGCCAGCACTTTGCACCTTTGCTCATCTGC...CTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
3UTR-3UTR TCA 90 bp AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCTCGGCAGTAGCAGATaGGCAAAGGTGCAAAGTGCT +
Preference number: 2 (lower is better)
Translates to: SDRFHEDMCYMERRQRNCLGSSR*AKVQSA
Trigger: AGCACTTTGCACCTTTGCTCATCTGCTACTGCCGAG...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
3UTR GCA 72 bp TTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTaGTATATGGAGCGCAGACAGAGGAATTGTCTCTTC +
Preference number: 3 (lower is better)
Translates to: LKGVSDRFHEDM*YMERRQRNCLF
Trigger: GAAGAGACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
3UTR TCA 72 bp AGAAAAGATCTATTCAGCAAAATTAAAGGGAGTAAGTaGCAGGTTTCACGAGGACATGTGCTATATGGAGCG +
Preference number: 3 (lower is better)
Translates to: RKDLFSKIKGSK*QVSRGHVLYGA
Trigger: CGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATAGATCTTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS-3UTR CCA 90 bp GTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCTGGATGGCAAACCACTaGGAAGGGGTTTGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: VTGFTRTCAIWSADRGIVWMANH*EGVCPR
Trigger: CCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCA...GACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS-3UTR CCA 90 bp AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCATGGGACTGTCCTGTaGAGTTCTGGGGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: SDRFHEDMCYMERRQRNCHGTVL*SSGVTG
Trigger: GCCTGTAACCCCAGAACTCCACAGGACAGTCCCATG...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS-3UTR CCA 90 bp AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGTGTCCTGTGGAGTTCTaGGGTTACAGGCAACTGTGT +
Preference number: 4 (lower is better)
Translates to: KGVSDRFHEDMCYMERRQCPVEF*GYRQLC
Trigger: ACACAGTTGCCTGTAACCCCAGAACTCCACAGGACA...CTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
3UTR CAA 72 bp CGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATaGTCTCTTCACTACTATGATCTCGGCAGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: RGHVLYGAQTEE*SLHYYDLGSSR
Trigger: TCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS-3UTR TCA 90 bp ACTACTATGATCTCGGCAGTAGCAGATGAGCAAAGGTGCAAAGTGCTGGCACTGTTCTCCTCCGACTGGTaGTGTTACAGACAGTTATAC +
Preference number: 4 (lower is better)
Translates to: TTMISAVADEQRCKVLALFSSDW*CYRQLY
Trigger: GTATAACTGTCTGTAACATCACCAGTCGGAGGAGAA...CAGTGCCAGCACTTTGCACCTTTGCTCATCTGCTACTGCCGAGATCATAGTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS-3UTR GCA 90 bp AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTTTCTTGGTTGGTATCTaGATTGGGTATAAGGTGTTC +
Preference number: 4 (lower is better)
Translates to: SDRFHEDMCYMERRQRNCFLVGI*IGYKVF
Trigger: GAACACCTTATACCCAATGCAGATACCAACCAAGAA...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CCA 90 bp CATTGGAGGTTGGCATTATTATTGATATGCTGGATGGCAAACCACTaGGAAGGGGTTTGTCCCAGGCATGAGGCAAGCATTAGGACAAGT +
Preference number: 5 (lower is better)
Translates to: HWRLALLLICWMANH*EGVCPRHEASIRTS
Trigger: ACTTGTCCTAATGCTTGCCTCATGCCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CCA 90 bp AGTGAACTGGAACCACTGGATACATGGGACTGTCCTGTGGAGTTCTaGGGTTACAGGCAACTGTGTAGTACTCCAATGATCTTCTTGGTT +
Preference number: 5 (lower is better)
Translates to: SELEPLDTWDCPVEF*GYRQLCSTPMIFLV
Trigger: AACCAAGAAGATCATTGGAGTACTACACAGTTGCCTGTAACCCCAGAACTCCACAGGACAGTCCCATGTATCCAGTGGTTCCAGTTCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS-3UTR CAA 90 bp AGTGACAGGTTTCACGAGGACATGTGCTATATGGAGCGCAGACAGAGGAATTGTCAGTTTCTACTTATATaGTCACTGCACAAGCCACTT +
Preference number: 5 (lower is better)
Translates to: SDRFHEDMCYMERRQRNCQFLLI*SLHKPL
Trigger: AAGTGGCTTGTGCAGTGACAATATAAGTAGAAACTG...ACAATTCCTCTGTCTGCGCTCCATATAGCACATGTCCTCGTGAAACCTGTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS TCA 90 bp TCTCCTCCGACTGGTGATGTTACAGACAGTTATACGTACCCGAGATaGACTATTATGACAGTTTCTACTTATATTGTCACTGCACAAGCC +
Preference number: 5 (lower is better)
Translates to: SPPTGDVTDSYTYPR*TIMTVSTYIVTAQA
Trigger: GGCTTGTGCAGTGACAATATAAGTAGAAACTGTCATAATAGTTCATCTCGGGTACGTATAACTGTCTGTAACATCACCAGTCGGAGGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS-3UTR CAA 90 bp TATTCAGCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGCTATACTCCAATGATCTTCTaGGTTGGTATCTGCATTGGG +
Preference number: 5 (lower is better)
Translates to: YSAKLKGVSDRFHEDMCYTPMIF*VGICIG
Trigger: CCCAATGCAGATACCAACCAAGAAGATCATTGGAGT...ATAGCACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CCA 72 bp ACATTACATTGGAGGTTGGCATTATTATTGATATGCTaGATGGCAAACCACTGGGAAGGGGTTTGTCCCAGG +
Preference number: 6 (lower is better)
Translates to: TLHWRLALLLIC*MANHWEGVCPR
Trigger: CCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS TCA 72 bp AGTTCTGGGGTTACAGGCAACTGTGTAGTACTCCAATaGTCTTCTTGGTTGGTATCTGCATTGGGTATAAGG +
Preference number: 6 (lower is better)
Translates to: SSGVTGNCVVLQ*SSWLVSALGIR
Trigger: CCTTATACCCAATGCAGATACCAACCAAGAAGATCATTGGAGTACTACACAGTTGCCTGTAACCCCAGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS GCA 72 bp TCAACATTACATTGGAGGTTGGCATTATTATTGATATaGTGGATGGCAAACCACTGGGAAGGGGTTTGTCCC +
Preference number: 6 (lower is better)
Translates to: STLHWRLALLLI*WMANHWEGVCP
Trigger: GGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CAA 90 bp TTAATACGCTGCATTTCAACATTACATTGGAGGTTGGCATTATTATaGATATGCTGGATGGCAAACCACTGGGAAGGGGTTTGTCCCAGG +
Preference number: 6 (lower is better)
Translates to: LIRCISTLHWRLALL*ICWMANHWEGVCPR
Trigger: CCTGGGACAAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS TCA 72 bp GCATTTCAACATTACATTGGAGGTTGGCATTATTATTaGTATGCTGGATGGCAAACCACTGGGAAGGGGTTT +
Preference number: 6 (lower is better)
Translates to: AFQHYIGGWHYY*YAGWQTTGKGF
Trigger: AAACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CAA 72 bp TGCATTTCAACATTACATTGGAGGTTGGCATTATTATaGATATGCTGGATGGCAAACCACTGGGAAGGGGTT +
Preference number: 6 (lower is better)
Translates to: CISTLHWRLALL*ICWMANHWEGV
Trigger: AACCCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CAA 90 bp CTTCTAAACCTGTTAATACGCTGCATTTCAACATTACATTGGAGGTaGGCATTATTATTGATATGCTGGATGGCAAACCACTGGGAAGGG +
Preference number: 6 (lower is better)
Translates to: LLNLLIRCISTLHWR*ALLLICWMANHWEG
Trigger: CCCTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CCA 72 bp ACAGTTTCTACTTATATTGTCACTGCACAAGCCACTTaGATTTCCACACACACCAACAGCATTAGCAAAACT +
Preference number: 6 (lower is better)
Translates to: TVSTYIVTAQAT*ISTHTNSISKT
Trigger: AGTTTTGCTAATGCTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAATATAAGTAGAAACTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS GCA 72 bp ATGAACTATTATGACAGTTTCTACTTATATTGTCACTaGACAAGCCACTTGGATTTCCACACACACCAACAG +
Preference number: 6 (lower is better)
Translates to: MNYYDSFYLYCH*TSHLDFHTHQQ
Trigger: CTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAATATAAGTAGAAACTGTCATAATAGTTCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CAA 72 bp CTGTTAATACGCTGCATTTCAACATTACATTGGAGGTaGGCATTATTATTGATATGCTGGATGGCAAACCAC +
Preference number: 6 (lower is better)
Translates to: LLIRCISTLHWR*ALLLICWMANH
Trigger: GTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CAA 90 bp ACATGTTCTTCTAAACCTGTTAATACGCTGCATTTCAACATTACATaGGAGGTTGGCATTATTATTGATATGCTGGATGGCAAACCACTG +
Preference number: 6 (lower is better)
Translates to: TCSSKPVNTLHFNIT*EVGIIIDMLDGKPL
Trigger: CAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGAAGAACATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CCA 72 bp CTAAACCTGTTAATACGCTGCATTTCAACATTACATTaGAGGTTGGCATTATTATTGATATGCTGGATGGCA +
Preference number: 6 (lower is better)
Translates to: LNLLIRCISTLH*RLALLLICWMA
Trigger: TGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7
CDS CAA 72 bp TCTAAACCTGTTAATACGCTGCATTTCAACATTACATaGGAGGTTGGCATTATTATTGATATGCTGGATGGC +
Preference number: 6 (lower is better)
Translates to: SKPVNTLHFNIT*EVGIIIDMLDG
Trigger: GCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074839.7