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Pregenerated sensors for EAR14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050766

Ensembl transcript IDs: ENSMUST00000049559.2, ENSMUST00000228064.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTTTCATGAGGACAGGTGCTGATATGCAGCACAGACAGAGGAATTaGTTCTTCACTACTATTATCTTGGCAGTAGCAGATGAGCGAAGG +
Preference number: 1 (lower is better)
Translates to: GFMRTGADMQHRQRN*FFTTIILAVADERR
Trigger: CCTTCGCTCATCTGCTACTGCCAAGATAATAGTAGTGAAGAACCAATTCCTCTGTCTGTGCTGCATATCAGCACCTGTCCTCATGAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
3UTR-3UTR GCA 90 bp GGACAGGTGCTGATATGCAGCACAGACAGAGGAATTGGTTCTTCACTACTATTAGCAGATGAGCGAAGGTaGAAAGTGCTGGCACTGGAA +
Preference number: 2 (lower is better)
Translates to: GQVLICSTDRGIGSSLLLADERR*KVLALE
Trigger: TTCCAGTGCCAGCACTTTGCACCTTCGCTCATCTGC...TAATAGTAGTGAAGAACCAATTCCTCTGTCTGTGCTGCATATCAGCACCTGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
3UTR CAA 90 bp GATATGCAGCACAGACAGAGGAATTGGTTCTTCACTACTATTATCTaGGCAGTAGCAGATGAGCGAAGGTGCAAAGTGCTGGCACTGGAA +
Preference number: 2 (lower is better)
Translates to: DMQHRQRNWFFTTII*AVADERRCKVLALE
Trigger: TTCCAGTGCCAGCACTTTGCACCTTCGCTCATCTGCTACTGCCAAGATAATAGTAGTGAAGAACCAATTCCTCTGTCTGTGCTGCATATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
3UTR-3UTR GCA 90 bp CAAAGGTATTTGTTGACTAGAAAAGATCTGTTCAGCTCAATTAAAGGGAGTCAGGGACAGGTGCTGATATaGAGCACAGACAGAGGAATT +
Preference number: 2 (lower is better)
Translates to: QRYLLTRKDLFSSIKGSQGQVLI*STDRGI
Trigger: AATTCCTCTGTCTGTGCTGCATATCAGCACCTGTCC...CTGACTCCCTTTAATTGAGCTGAACAGATCTTTTCTAGTCAACAAATACCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
3UTR TCA 72 bp AAGGGAGTCAGTGACAGGTTTCATGAGGACAGGTGCTaGTATGCAGCACAGACAGAGGAATTGGTTCTTCAC +
Preference number: 3 (lower is better)
Translates to: KGVSDRFHEDRC*YAAQTEELVLH
Trigger: GTGAAGAACCAATTCCTCTGTCTGTGCTGCATATCAGCACCTGTCCTCATGAAACCTGTCACTGACTCCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
3UTR CCA 72 bp AGGACAGGTGCTGATATGCAGCACAGACAGAGGAATTaGTTCTTCACTACTATTATCTTGGCAGTAGCAGAT +
Preference number: 3 (lower is better)
Translates to: RTGADMQHRQRN*FFTTIILAVAD
Trigger: ATCTGCTACTGCCAAGATAATAGTAGTGAAGAACCAATTCCTCTGTCTGTGCTGCATATCAGCACCTGTCCT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS-3UTR CCA 90 bp ACTACTATTATCTTGGCAGTAGCAGATGAGCGAAGGTGCAAAGTGCTGGCACTGGAACCACTGGATAGATaGGAGTGTCTTGTGGAGTTC +
Preference number: 4 (lower is better)
Translates to: TTIILAVADERRCKVLALEPLDR*ECLVEF
Trigger: GAACTCCACAAGACACTCCCATCTATCCAGTGGTTC...CAGTGCCAGCACTTTGCACCTTCGCTCATCTGCTACTGCCAAGATAATAGTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS-3UTR CCA 90 bp ATCTGTTCAGCTCAATTAAAGGGAGTCAGTGACAGGTTTCATGAGGACAGGTGCCAGGTGATATTTGGATaGCCACACACAGCAACAACA +
Preference number: 4 (lower is better)
Translates to: ICSAQLKGVSDRFHEDRCQVIFG*PHTATT
Trigger: TGTTGTTGCTGTGTGTGGCCATCCAAATATCACCTG...GCACCTGTCCTCATGAAACCTGTCACTGACTCCCTTTAATTGAGCTGAACAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
3UTR CAA 72 bp CACAGACAGAGGAATTGGTTCTTCACTACTATTATCTaGGCAGTAGCAGATGAGCGAAGGTGCAAAGTGCTG +
Preference number: 4 (lower is better)
Translates to: HRQRNWFFTTII*AVADERRCKVL
Trigger: CAGCACTTTGCACCTTCGCTCATCTGCTACTGCCAAGATAATAGTAGTGAAGAACCAATTCCTCTGTCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS-3UTR TCA 90 bp AGGACAGGTGCTGATATGCAGCACAGACAGAGGAATTGGTTCTTCACTACTATTTCTGTAGTACTTCACTaGACCTGTCGTTTGGTATCT +
Preference number: 4 (lower is better)
Translates to: RTGADMQHRQRNWFFTTISVVLH*TCRLVS
Trigger: AGATACCAAACGACAGGTTCAGTGAAGTACTACAGA...AATAGTAGTGAAGAACCAATTCCTCTGTCTGTGCTGCATATCAGCACCTGTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS-3UTR CCA 90 bp TATGCAGCACAGACAGAGGAATTGGTTCTTCACTACTATTATCTTGGCAGTAGCACTGAACCTGTCGTTTaGTATCTGCATTGTGTGCAT +
Preference number: 4 (lower is better)
Translates to: YAAQTEELVLHYYYLGSSTEPVV*YLHCVH
Trigger: ATGCACACAATGCAGATACCAAACGACAGGTTCAGT...GCTACTGCCAAGATAATAGTAGTGAAGAACCAATTCCTCTGTCTGTGCTGCATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS-3UTR CCA 90 bp CAAAGGTATTTGTTGACTAGAAAAGATCTGTTCAGCTCAATTAAAGGGAGTCAGGATGGGAGTGTCTTGTaGAGTTCTGTTCTCACAGGC +
Preference number: 4 (lower is better)
Translates to: QRYLLTRKDLFSSIKGSQDGSVL*SSVLTG
Trigger: GCCTGTGAGAACAGAACTCCACAAGACACTCCCATC...CTGACTCCCTTTAATTGAGCTGAACAGATCTTTTCTAGTCAACAAATACCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS-3UTR CCA 90 bp CAAAGGTATTTGTTGACTAGAAAAGATCTGTTCAGCTCAATTAAAGGGAGTCAGGTTGCAGGTGATATTTaGATGGCCACACACAGCAAC +
Preference number: 4 (lower is better)
Translates to: QRYLLTRKDLFSSIKGSQVAGDI*MATHSN
Trigger: GTTGCTGTGTGTGGCCATCCAAATATCACCTGCAAC...CTGACTCCCTTTAATTGAGCTGAACAGATCTTTTCTAGTCAACAAATACCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS-3UTR CCA 90 bp CAAAGGTATTTGTTGACTAGAAAAGATCTGTTCAGCTCAATTAAAGGGAGTCAGGTGAACTGGAACCACTaGATAGATGGGAGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: QRYLLTRKDLFSSIKGSQVNWNH*IDGSVL
Trigger: CAAGACACTCCCATCTATCCAGTGGTTCCAGTTCAC...CTGACTCCCTTTAATTGAGCTGAACAGATCTTTTCTAGTCAACAAATACCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS TCA 90 bp GTCTTGTGGAGTTCTGTTCTCACAGGCTACTCTGTAGTACTTCACTaGACCTGTCGTTTGGTATCTGCATTGTGTGCATATTCTTGTCGG +
Preference number: 5 (lower is better)
Translates to: VLWSSVLTGYSVVLH*TCRLVSALCAYSCR
Trigger: CCGACAAGAATATGCACACAATGCAGATACCAAACGACAGGTTCAGTGAAGTACTACAGAGTAGCCTGTGAGAACAGAACTCCACAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049559.2
ENSMUST00000228064.2
CDS-3UTR CAA 90 bp CAAAGGTATTTGTTGACTAGAAAAGATCTGTTCAGCTCAATTAAAGGGAGTCAGCGTTTGGTATCTGCATaGTGTGCATATTCTTGTCGG +
Preference number: 5 (lower is better)
Translates to: QRYLLTRKDLFSSIKGSQRLVSA*CAYSCR
Trigger: CCGACAAGAATATGCACACAATGCAGATACCAAACG...CTGACTCCCTTTAATTGAGCTGAACAGATCTTTTCTAGTCAACAAATACCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228064.2
CDS TCA 72 bp AGTTCTGTTCTCACAGGCTACTCTGTAGTACTTCACTaGACCTGTCGTTTGGTATCTGCATTGTGTGCATAT +
Preference number: 6 (lower is better)
Translates to: SSVLTGYSVVLH*TCRLVSALCAY
Trigger: ATATGCACACAATGCAGATACCAAACGACAGGTTCAGTGAAGTACTACAGAGTAGCCTGTGAGAACAGAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049559.2
ENSMUST00000228064.2