RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EAR10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090166

Ensembl transcript IDs: ENSMUST00000159175.2, ENSMUST00000163652.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GGGAGTCAGGGACAGGTTTCAAGAGGACAGGTGCTGATATGGAGCGCAGACAGATGGATGGCAAACCACTaGGAAGTGGTTTGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: GSQGQVSRGQVLIWSADRWMANH*EVVCPR
Trigger: CCTGGGACAAACCACTTCCCAGTGGTTTGCCATCCA...TCTGTCTGCGCTCCATATCAGCACCTGTCCTCTTGAAACCTGTCCCTGACTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159175.2
CDS-3UTR TCA 90 bp GGGAGTCAGGGACAGGTTTCAAGAGGACAGGTGCTGATATGGAGCGCAGACAGAAATGTCCCATCCAAGTaGACTGGAACCACTGGATAC +
Preference number: 4 (lower is better)
Translates to: GSQGQVSRGQVLIWSADRNVPSK*TGTTGY
Trigger: GTATCCAGTGGTTCCAGTTCACTTGGATGGGACATT...TCTGTCTGCGCTCCATATCAGCACCTGTCCTCTTGAAACCTGTCCCTGACTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159175.2
CDS-3UTR TCA 90 bp GGGAGTCAGGGACAGGTTTCAAGAGGACAGGTGCTGATATGGAGCGCAGACAGAGGTTGGCATTATTATTaGTATGCTGGATGGCAAACC +
Preference number: 4 (lower is better)
Translates to: GSQGQVSRGQVLIWSADRGWHYY*YAGWQT
Trigger: GGTTTGCCATCCAGCATATCAATAATAATGCCAACC...TCTGTCTGCGCTCCATATCAGCACCTGTCCTCTTGAAACCTGTCCCTGACTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159175.2
CDS-3UTR TCA 90 bp AGGGAGTCAGGGACAGGTTTCAAGAGGACAGGTGCTGATATGGAGCGCAGACAGTTCTCCTCCAACTGGTaGTGTTACAGACAGTTATAT +
Preference number: 4 (lower is better)
Translates to: RESGTGFKRTGADMERRQFSSNW*CYRQLY
Trigger: ATATAACTGTCTGTAACATCACCAGTTGGAGGAGAA...CTGTCTGCGCTCCATATCAGCACCTGTCCTCTTGAAACCTGTCCCTGACTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159175.2
CDS-3UTR GCA 90 bp AGGGAGTCAGGGACAGGTTTCAAGAGGACAGGTGCTGATATGGAGCGCAGACAGGCATTATTATTGATATaGTGGATGGCAAACCACTGG +
Preference number: 4 (lower is better)
Translates to: RESGTGFKRTGADMERRQALLLI*WMANHW
Trigger: CCAGTGGTTTGCCATCCAGCATATCAATAATAATGC...CTGTCTGCGCTCCATATCAGCACCTGTCCTCTTGAAACCTGTCCCTGACTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159175.2
CDS-3UTR CCA 90 bp AAAGGGAGTCAGGGACAGGTTTCAAGAGGACAGGTGCTGATATGGAGCGCAGACTTATTATTGATATGCTaGATGGCAAACCACTGGGAA +
Preference number: 4 (lower is better)
Translates to: KGSQGQVSRGQVLIWSADLLLIC*MANHWE
Trigger: TTCCCAGTGGTTTGCCATCCAGCATATCAATAATAA...GTCTGCGCTCCATATCAGCACCTGTCCTCTTGAAACCTGTCCCTGACTCCCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159175.2
CDS TCA 90 bp GTCCTGTGGAGTTCTGGGGTCACAGGCAACTGTGTAGTACTCCAATaGTCTTTTAGCTTGGTATCTGCATTGGGTATAAGGTGTTCTCCT +
Preference number: 5 (lower is better)
Translates to: VLWSSGVTGNCVVLQ*SFSLVSALGIRCSP
Trigger: AGGAGAACACCTTATACCCAATGCAGATACCAAGCTAAAAGATCATTGGAGTACTACACAGTTGCCTGTGACCCCAGAACTCCACAGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CCA 90 bp CATTGGAGGTTGGCATTATTATTGATATGCTGGATGGCAAACCACTaGGAAGTGGTTTGTCCCAGGCATGAGGCAAGCATTAGGACAAGT +
Preference number: 5 (lower is better)
Translates to: HWRLALLLICWMANH*EVVCPRHEASIRTS
Trigger: ACTTGTCCTAATGCTTGCCTCATGCCTGGGACAAACCACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CCA 90 bp CATGTTCTTCTAAACCTGTTAATACGCTGCATTTCAACATTACATTaGAGGTTGGCATTATTATTGATATGCTGGATGGCAAACCACTGG +
Preference number: 5 (lower is better)
Translates to: HVLLNLLIRCISTLH*RLALLLICWMANHW
Trigger: CCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGAAGAACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CCA 72 bp TTGGCATTATTATTGATATGCTGGATGGCAAACCACTaGGAAGTGGTTTGTCCCAGGCATGAGGCAAGCATT +
Preference number: 6 (lower is better)
Translates to: LALLLICWMANH*EVVCPRHEASI
Trigger: AATGCTTGCCTCATGCCTGGGACAAACCACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CCA 72 bp ACATTACATTGGAGGTTGGCATTATTATTGATATGCTaGATGGCAAACCACTGGGAAGTGGTTTGTCCCAGG +
Preference number: 6 (lower is better)
Translates to: TLHWRLALLLIC*MANHWEVVCPR
Trigger: CCTGGGACAAACCACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS GCA 72 bp TCAACATTACATTGGAGGTTGGCATTATTATTGATATaGTGGATGGCAAACCACTGGGAAGTGGTTTGTCCC +
Preference number: 6 (lower is better)
Translates to: STLHWRLALLLI*WMANHWEVVCP
Trigger: GGGACAAACCACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CAA 90 bp TTAATACGCTGCATTTCAACATTACATTGGAGGTTGGCATTATTATaGATATGCTGGATGGCAAACCACTGGGAAGTGGTTTGTCCCAGG +
Preference number: 6 (lower is better)
Translates to: LIRCISTLHWRLALL*ICWMANHWEVVCPR
Trigger: CCTGGGACAAACCACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CAA 90 bp CTTCTAAACCTGTTAATACGCTGCATTTCAACATTACATTGGAGGTaGGCATTATTATTGATATGCTGGATGGCAAACCACTGGGAAGTG +
Preference number: 6 (lower is better)
Translates to: LLNLLIRCISTLHWR*ALLLICWMANHWEV
Trigger: CACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCAGCGTATTAACAGGTTTAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS TCA 72 bp GCATTTCAACATTACATTGGAGGTTGGCATTATTATTaGTATGCTGGATGGCAAACCACTGGGAAGTGGTTT +
Preference number: 6 (lower is better)
Translates to: AFQHYIGGWHYY*YAGWQTTGKWF
Trigger: AAACCACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CCA 72 bp ACAGTTTTGACTTATATTGTCACTGCACAAGCCACTTaGATTTCCACACACACCAACAGCATTAGCAAAACT +
Preference number: 6 (lower is better)
Translates to: TVLTYIVTAQAT*ISTHTNSISKT
Trigger: AGTTTTGCTAATGCTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAATATAAGTCAAAACTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2
CDS CAA 72 bp TGCATTTCAACATTACATTGGAGGTTGGCATTATTATaGATATGCTGGATGGCAAACCACTGGGAAGTGGTT +
Preference number: 6 (lower is better)
Translates to: CISTLHWRLALL*ICWMANHWEVV
Trigger: AACCACTTCCCAGTGGTTTGCCATCCAGCATATCAATAATAATGCCAACCTCCAATGTAATGTTGAAATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000159175.2
ENSMUST00000163652.2