RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EAR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000072601

Ensembl transcript IDs: ENSMUST00000100691.4, ENSMUST00000179200.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp AGAAAAGATCTATTCAGCAAAATTAAAGGGAGTAAGTaGCAGGTTTCACGAGGACATGTGTTATATGGAGCG +
Preference number: 3 (lower is better)
Translates to: RKDLFSKIKGSK*QVSRGHVLYGA
Trigger: CGCTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATAGATCTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR TCA 90 bp GTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATTGTCTTCTGGGAAGGGGTTTaGCCCAGGCATGAGGCAAGC +
Preference number: 4 (lower is better)
Translates to: VTGFTRTCVIWSADRGIVFWEGV*PRHEAS
Trigger: GCTTGCCTCATGCCTGGGTCAAACCCCTTCCCAGAA...GACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR CCA 90 bp AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGCATGGGACTGTCCTGTaGAGTTCTGGGGTCACAGGC +
Preference number: 4 (lower is better)
Translates to: KGVSDRFHEDMCYMERRQHGTVL*SSGVTG
Trigger: GCCTGTGACCCCAGAACTCCACAGGACAGTCCCATG...CTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR CCA 90 bp CAGAGGAATTGTCTCTTCACTACTATGATCTCGGCAGTAGCAGATGAGCGAAGGGTGAACTGGAACCACTaGATACATGGGACTGTCCTG +
Preference number: 4 (lower is better)
Translates to: QRNCLFTTMISAVADERRVNWNH*IHGTVL
Trigger: CAGGACAGTCCCATGTATCCAGTGGTTCCAGTTCAC...CCTTCGCTCATCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR CCA 90 bp CAGAGGAATTGTCTCTTCACTACTATGATCTCGGCAGTAGCAGATGAGCGAAGGCCCATCCAAGTGAACTaGAACCACTGGATACATGGG +
Preference number: 4 (lower is better)
Translates to: QRNCLFTTMISAVADERRPIQVN*NHWIHG
Trigger: CCCATGTATCCAGTGGTTCCAGTTCACTTGGATGGG...CCTTCGCTCATCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR CCA 90 bp AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGACTGCACAAGCCACTTaGATTTCCACACACACCAAC +
Preference number: 4 (lower is better)
Translates to: KGVSDRFHEDMCYMERRQTAQAT*ISTHTN
Trigger: GTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGT...CTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
3UTR CAA 72 bp CGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATaGTCTCTTCACTACTATGATCTCGGCAGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: RGHVLYGAQTEE*SLHYYDLGSSR
Trigger: TCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR TCA 90 bp CAGAGGAATTGTCTCTTCACTACTATGATCTCGGCAGTAGCAGATGAGCGAAGGTTGTTGCCCGACTGGTaGTGTTACAGACAGTTATAT +
Preference number: 4 (lower is better)
Translates to: QRNCLFTTMISAVADERRLLPDW*CYRQLY
Trigger: ATATAACTGTCTGTAACATCACCAGTCGGGCAACAA...CCTTCGCTCATCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR GCA 90 bp TTAGAAAAGATCTATTCAGCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACTTCTCTTGTCACTaGACAAGCCACTTGGATTTC +
Preference number: 4 (lower is better)
Translates to: LEKIYSAKLKGVSDRFHEDFSCH*TSHLDF
Trigger: GAAATCCAAGTGGCTTGTGCAGTGACAAGAGAAGTC...CTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATAGATCTTTTCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR CCA 90 bp GCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGTTATATGGAGTTATTATTGATATGCTaGATGGCAAACTTCTGGGAA +
Preference number: 4 (lower is better)
Translates to: AKLKGVSDRFHEDMCYMELLLIC*MANFWE
Trigger: TTCCCAGAAGTTTGCCATCCAGCATATCAATAATAA...CTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS CCA 90 bp AGTGAACTGGAACCACTGGATACATGGGACTGTCCTGTGGAGTTCTaGGGTCACAGGCAACTGTGTAGTACTCCAATGATCTTCTTGATT +
Preference number: 5 (lower is better)
Translates to: SELEPLDTWDCPVEF*GHRQLCSTPMIFLI
Trigger: AATCAAGAAGATCATTGGAGTACTACACAGTTGCCTGTGACCCCAGAACTCCACAGGACAGTCCCATGTATCCAGTGGTTCCAGTTCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100691.4
ENSMUST00000179200.2
CDS-3UTR CAA 90 bp GTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATTGTCAGGTTGGTATTATTATaGATATGCTGGATGGCAAAC +
Preference number: 5 (lower is better)
Translates to: VTGFTRTCVIWSADRGIVRLVLL*ICWMAN
Trigger: GTTTGCCATCCAGCATATCAATAATAATACCAACCT...GACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS-3UTR CAA 90 bp GTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATTGTCACTATTATGACAGTTTaGACTTCTCTTGTCACTGCA +
Preference number: 5 (lower is better)
Translates to: VTGFTRTCVIWSADRGIVTIMTV*TSLVTA
Trigger: TGCAGTGACAAGAGAAGTCAAAACTGTCATAATAGT...GACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100691.4
CDS CCA 90 bp CATGTTCTTCTAGCCCTGTTAATACGCATCATTTCAACATTACATTaGAGGTTGGTATTATTATTGATATGCTGGATGGCAAACTTCTGG +
Preference number: 5 (lower is better)
Translates to: HVLLALLIRIISTLH*RLVLLLICWMANFW
Trigger: CCAGAAGTTTGCCATCCAGCATATCAATAATAATACCAACCTCCAATGTAATGTTGAAATGATGCGTATTAACAGGGCTAGAAGAACATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100691.4
ENSMUST00000179200.2
CDS CCA 72 bp ACAGTTTTGACTTCTCTTGTCACTGCACAAGCCACTTaGATTTCCACACACACCAACAGCATTAGCAAAACT +
Preference number: 6 (lower is better)
Translates to: TVLTSLVTAQAT*ISTHTNSISKT
Trigger: AGTTTTGCTAATGCTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAAGAGAAGTCAAAACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100691.4
ENSMUST00000179200.2
CDS GCA 72 bp ATGAACTATTATGACAGTTTTGACTTCTCTTGTCACTaGACAAGCCACTTGGATTTCCACACACACCAACAG +
Preference number: 6 (lower is better)
Translates to: MNYYDSFDFSCH*TSHLDFHTHQQ
Trigger: CTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAAGAGAAGTCAAAACTGTCATAATAGTTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100691.4
ENSMUST00000179200.2
CDS CAA 90 bp CTTCTAGCCCTGTTAATACGCATCATTTCAACATTACATTGGAGGTaGGTATTATTATTGATATGCTGGATGGCAAACTTCTGGGAAGGG +
Preference number: 6 (lower is better)
Translates to: LLALLIRIISTLHWR*VLLLICWMANFWEG
Trigger: CCCTTCCCAGAAGTTTGCCATCCAGCATATCAATAATAATACCAACCTCCAATGTAATGTTGAAATGATGCGTATTAACAGGGCTAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100691.4
ENSMUST00000179200.2
CDS TCA 72 bp ACTGGTGATGTTACAGACAGTTATATGTACCCGAGATaGACTATTATGACAGTTTTGACTTCTCTTGTCACT +
Preference number: 6 (lower is better)
Translates to: TGDVTDSYMYPR*TIMTVLTSLVT
Trigger: AGTGACAAGAGAAGTCAAAACTGTCATAATAGTTCATCTCGGGTACATATAACTGTCTGTAACATCACCAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100691.4
ENSMUST00000179200.2
CDS CAA 72 bp CTGTTAATACGCATCATTTCAACATTACATTGGAGGTaGGTATTATTATTGATATGCTGGATGGCAAACTTC +
Preference number: 6 (lower is better)
Translates to: LLIRIISTLHWR*VLLLICWMANF
Trigger: GAAGTTTGCCATCCAGCATATCAATAATAATACCAACCTCCAATGTAATGTTGAAATGATGCGTATTAACAG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100691.4
ENSMUST00000179200.2