Pregenerated sensors for EAR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072601Ensembl transcript IDs: ENSMUST00000100691.4, ENSMUST00000179200.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 72 bp | AGAAAAGATCTATTCAGCAAAATTAAAGGGAGTAAGTaGCAGGTTTCACGAGGACATGTGTTATATGGAGCG | + |
Preference number: 3 (lower is better) Translates to: RKDLFSKIKGSK*QVSRGHVLYGA Trigger: CGCTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATAGATCTTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR TCA 90 bp | GTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATTGTCTTCTGGGAAGGGGTTTaGCCCAGGCATGAGGCAAGC | + |
Preference number: 4 (lower is better) Translates to: VTGFTRTCVIWSADRGIVFWEGV*PRHEAS Trigger: GCTTGCCTCATGCCTGGGTCAAACCCCTTCCCAGAA...GACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR CCA 90 bp | AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGCATGGGACTGTCCTGTaGAGTTCTGGGGTCACAGGC | + |
Preference number: 4 (lower is better) Translates to: KGVSDRFHEDMCYMERRQHGTVL*SSGVTG Trigger: GCCTGTGACCCCAGAACTCCACAGGACAGTCCCATG...CTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR CCA 90 bp | CAGAGGAATTGTCTCTTCACTACTATGATCTCGGCAGTAGCAGATGAGCGAAGGGTGAACTGGAACCACTaGATACATGGGACTGTCCTG | + |
Preference number: 4 (lower is better) Translates to: QRNCLFTTMISAVADERRVNWNH*IHGTVL Trigger: CAGGACAGTCCCATGTATCCAGTGGTTCCAGTTCAC...CCTTCGCTCATCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR CCA 90 bp | CAGAGGAATTGTCTCTTCACTACTATGATCTCGGCAGTAGCAGATGAGCGAAGGCCCATCCAAGTGAACTaGAACCACTGGATACATGGG | + |
Preference number: 4 (lower is better) Translates to: QRNCLFTTMISAVADERRPIQVN*NHWIHG Trigger: CCCATGTATCCAGTGGTTCCAGTTCACTTGGATGGG...CCTTCGCTCATCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR CCA 90 bp | AAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGACTGCACAAGCCACTTaGATTTCCACACACACCAAC | + |
Preference number: 4 (lower is better) Translates to: KGVSDRFHEDMCYMERRQTAQAT*ISTHTN Trigger: GTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGT...CTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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3UTR CAA 72 bp | CGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATaGTCTCTTCACTACTATGATCTCGGCAGTAGCAGA | + |
Preference number: 4 (lower is better) Translates to: RGHVLYGAQTEE*SLHYYDLGSSR Trigger: TCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR TCA 90 bp | CAGAGGAATTGTCTCTTCACTACTATGATCTCGGCAGTAGCAGATGAGCGAAGGTTGTTGCCCGACTGGTaGTGTTACAGACAGTTATAT | + |
Preference number: 4 (lower is better) Translates to: QRNCLFTTMISAVADERRLLPDW*CYRQLY Trigger: ATATAACTGTCTGTAACATCACCAGTCGGGCAACAA...CCTTCGCTCATCTGCTACTGCCGAGATCATAGTAGTGAAGAGACAATTCCTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR GCA 90 bp | TTAGAAAAGATCTATTCAGCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACTTCTCTTGTCACTaGACAAGCCACTTGGATTTC | + |
Preference number: 4 (lower is better) Translates to: LEKIYSAKLKGVSDRFHEDFSCH*TSHLDF Trigger: GAAATCCAAGTGGCTTGTGCAGTGACAAGAGAAGTC...CTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGCTGAATAGATCTTTTCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR CCA 90 bp | GCAAAATTAAAGGGAGTAAGTGACAGGTTTCACGAGGACATGTGTTATATGGAGTTATTATTGATATGCTaGATGGCAAACTTCTGGGAA | + |
Preference number: 4 (lower is better) Translates to: AKLKGVSDRFHEDMCYMELLLIC*MANFWE Trigger: TTCCCAGAAGTTTGCCATCCAGCATATCAATAATAA...CTCCATATAACACATGTCCTCGTGAAACCTGTCACTTACTCCCTTTAATTTTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS CCA 90 bp | AGTGAACTGGAACCACTGGATACATGGGACTGTCCTGTGGAGTTCTaGGGTCACAGGCAACTGTGTAGTACTCCAATGATCTTCTTGATT | + |
Preference number: 5 (lower is better) Translates to: SELEPLDTWDCPVEF*GHRQLCSTPMIFLI Trigger: AATCAAGAAGATCATTGGAGTACTACACAGTTGCCTGTGACCCCAGAACTCCACAGGACAGTCCCATGTATCCAGTGGTTCCAGTTCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100691.4 ENSMUST00000179200.2 |
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CDS-3UTR CAA 90 bp | GTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATTGTCAGGTTGGTATTATTATaGATATGCTGGATGGCAAAC | + |
Preference number: 5 (lower is better) Translates to: VTGFTRTCVIWSADRGIVRLVLL*ICWMAN Trigger: GTTTGCCATCCAGCATATCAATAATAATACCAACCT...GACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS-3UTR CAA 90 bp | GTGACAGGTTTCACGAGGACATGTGTTATATGGAGCGCAGACAGAGGAATTGTCACTATTATGACAGTTTaGACTTCTCTTGTCACTGCA | + |
Preference number: 5 (lower is better) Translates to: VTGFTRTCVIWSADRGIVTIMTV*TSLVTA Trigger: TGCAGTGACAAGAGAAGTCAAAACTGTCATAATAGT...GACAATTCCTCTGTCTGCGCTCCATATAACACATGTCCTCGTGAAACCTGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100691.4 |
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CDS CCA 90 bp | CATGTTCTTCTAGCCCTGTTAATACGCATCATTTCAACATTACATTaGAGGTTGGTATTATTATTGATATGCTGGATGGCAAACTTCTGG | + |
Preference number: 5 (lower is better) Translates to: HVLLALLIRIISTLH*RLVLLLICWMANFW Trigger: CCAGAAGTTTGCCATCCAGCATATCAATAATAATACCAACCTCCAATGTAATGTTGAAATGATGCGTATTAACAGGGCTAGAAGAACATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100691.4 ENSMUST00000179200.2 |
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CDS CCA 72 bp | ACAGTTTTGACTTCTCTTGTCACTGCACAAGCCACTTaGATTTCCACACACACCAACAGCATTAGCAAAACT | + |
Preference number: 6 (lower is better) Translates to: TVLTSLVTAQAT*ISTHTNSISKT Trigger: AGTTTTGCTAATGCTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAAGAGAAGTCAAAACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100691.4 ENSMUST00000179200.2 |
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CDS GCA 72 bp | ATGAACTATTATGACAGTTTTGACTTCTCTTGTCACTaGACAAGCCACTTGGATTTCCACACACACCAACAG | + |
Preference number: 6 (lower is better) Translates to: MNYYDSFDFSCH*TSHLDFHTHQQ Trigger: CTGTTGGTGTGTGTGGAAATCCAAGTGGCTTGTGCAGTGACAAGAGAAGTCAAAACTGTCATAATAGTTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100691.4 ENSMUST00000179200.2 |
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CDS CAA 90 bp | CTTCTAGCCCTGTTAATACGCATCATTTCAACATTACATTGGAGGTaGGTATTATTATTGATATGCTGGATGGCAAACTTCTGGGAAGGG | + |
Preference number: 6 (lower is better) Translates to: LLALLIRIISTLHWR*VLLLICWMANFWEG Trigger: CCCTTCCCAGAAGTTTGCCATCCAGCATATCAATAATAATACCAACCTCCAATGTAATGTTGAAATGATGCGTATTAACAGGGCTAGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100691.4 ENSMUST00000179200.2 |
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CDS TCA 72 bp | ACTGGTGATGTTACAGACAGTTATATGTACCCGAGATaGACTATTATGACAGTTTTGACTTCTCTTGTCACT | + |
Preference number: 6 (lower is better) Translates to: TGDVTDSYMYPR*TIMTVLTSLVT Trigger: AGTGACAAGAGAAGTCAAAACTGTCATAATAGTTCATCTCGGGTACATATAACTGTCTGTAACATCACCAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100691.4 ENSMUST00000179200.2 |
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CDS CAA 72 bp | CTGTTAATACGCATCATTTCAACATTACATTGGAGGTaGGTATTATTATTGATATGCTGGATGGCAAACTTC | + |
Preference number: 6 (lower is better) Translates to: LLIRIISTLHWR*VLLLICWMANF Trigger: GAAGTTTGCCATCCAGCATATCAATAATAATACCAACCTCCAATGTAATGTTGAAATGATGCGTATTAACAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100691.4 ENSMUST00000179200.2 |