RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DZANK1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037259

Ensembl transcript IDs: ENSMUST00000081982.12, ENSMUST00000163701.2

Found 339 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATCTGTCTGCTGTGGGTGAGGGGTCACCACCAGGCAGGGAATACTaGTGGGCAGAGGGGGAAGAGCCCAGAGATGGGCTGAGTCCAGTT +
Preference number: 1 (lower is better)
Translates to: HLSAVGEGSPPGREY*WAEGEEPRDGLSPV
Trigger: AACTGGACTCAGCCCATCTCTGGGCTCTTCCCCCTCTGCCCAGCAGTATTCCCTGCCTGGTGGTGACCCCTCACCCACAGCAGACAGATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 90 bp TGCTGGGCAGAGGGGGAAGAGCCCAGAGATGGGCTGAGTCCAGTTTaGGGGAGCACAAGACAGGTTCATCCCATTCTGGATCCTGGGAAG +
Preference number: 1 (lower is better)
Translates to: CWAEGEEPRDGLSPV*GSTRQVHPILDPGK
Trigger: CTTCCCAGGATCCAGAATGGGATGAACCTGTCTTGTGCTCCCTCAAACTGGACTCAGCCCATCTCTGGGCTCTTCCCCCTCTGCCCAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 90 bp GCAGGGAATACTGCTGGGCAGAGGGGGAAGAGCCCAGAGATGGGCTaGGTCCAGTTTGAGGGAGCACAAGACAGGTTCATCCCATTCTGG +
Preference number: 1 (lower is better)
Translates to: AGNTAGQRGKSPEMG*VQFEGAQDRFIPFW
Trigger: CCAGAATGGGATGAACCTGTCTTGTGCTCCCTCAAACTGGACTCAGCCCATCTCTGGGCTCTTCCCCCTCTGCCCAGCAGTATTCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 90 bp GACAACAGTCTGGAGAAGTATTCTGCTAACCAGCTGCTCCTCCCTTaGGCCATGCAAGTCCATCCATCAGATGACCACTCCATCCCATCA +
Preference number: 1 (lower is better)
Translates to: DNSLEKYSANQLLLP*AMQVHPSDDHSIPS
Trigger: TGATGGGATGGAGTGGTCATCTGATGGATGGACTTGCATGGCTCAAGGGAGGAGCAGCTGGTTAGCAGAATACTTCTCCAGACTGTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 90 bp GTCTGGAGAAGTATTCTGCTAACCAGCTGCTCCTCCCTTGAGCCATaGAAGTCCATCCATCAGATGACCACTCCATCCCATCAATTCCTC +
Preference number: 1 (lower is better)
Translates to: VWRSILLTSCSSLEP*KSIHQMTTPSHQFL
Trigger: GAGGAATTGATGGGATGGAGTGGTCATCTGATGGATGGACTTGCATGGCTCAAGGGAGGAGCAGCTGGTTAGCAGAATACTTCTCCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 90 bp TGTCCTAGACAGACAACAGTCTGGAGAAGTATTCTGCTAACCAGCTaGTCCTCCCTTGAGCCATGCAAGTCCATCCATCAGATGACCACT +
Preference number: 1 (lower is better)
Translates to: CPRQTTVWRSILLTS*SSLEPCKSIHQMTT
Trigger: AGTGGTCATCTGATGGATGGACTTGCATGGCTCAAGGGAGGAGCAGCTGGTTAGCAGAATACTTCTCCAGACTGTTGTCTGTCTAGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp ATTGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTaGCAGTTACCCCTCTCTTCAAGTGGACTCACATGTACTATTCTG +
Preference number: 1 (lower is better)
Translates to: IVTNCVTHYTERQAR*QLPLSSSGLTCTIL
Trigger: CAGAATAGTACATGTGAGTCCACTTGAAGAGAGGGGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp TCCAGTTTGAGGGAGCACAAGACAGGTTCATCCCATTCTGGATCCTaGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCTAAGGAA +
Preference number: 1 (lower is better)
Translates to: SSLREHKTGSSHSGS*EETFQIHCLLSAKE
Trigger: TTCCTTAGCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGTCTTGTGCTCCCTCAAACTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp AGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTaGAATGTTCTCCAAAGGAGGGGCCTGAGTGTTAGACATTTTGCT +
Preference number: 1 (lower is better)
Translates to: RKRERCWRPRVSHTM*NVLQRRGLSVRHFA
Trigger: AGCAAAATGTCTAACACTCAGGCCCCTCCTTTGGAGAACATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 90 bp TCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTaGCCCAGCATTACTCTCCTCACAGTGCATAACCTGATACAACCA +
Preference number: 1 (lower is better)
Translates to: SECPSQLYTCLGGKT*PSITLLTVHNLIQP
Trigger: TGGTTGTATCAGGTTATGCACTGTGAGGAGAGTAATGCTGGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 90 bp CATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTaGTCTCTGCTAAGGAAAGGACATAGCCGTTCTGCTATGAATTCT +
Preference number: 1 (lower is better)
Translates to: HPILDPGKRLFRYTV*SLLRKGHSRSAMNS
Trigger: AGAATTCATAGCAGAACGGCTATGTCCTTTCCTTAGCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp TTACACAGAGAGGCAGGCAAGGTGGCAGTTACCCCTCTCTTCAAGTaGACTCACATGTACTATTCTGTAAGTAAAAGGAAGAGAGAGAGA +
Preference number: 1 (lower is better)
Translates to: LHREAGKVAVTPLFK*THMYYSVSKRKRER
Trigger: TCTCTCTCTCTTCCTTTTACTTACAGAATAGTACATGTGAGTCCACTTGAAGAGAGGGGTAACTGCCACCTTGCCTGCCTCTCTGTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 90 bp ACCAGAACAAAACCATTCACTTCATCACCAGGAAGCAAAAGAGAATaGGGAGATCCCACAAGCCTCTTCAAAGACACACCTTCAACCACT +
Preference number: 1 (lower is better)
Translates to: TRTKPFTSSPGSKRE*GDPTSLFKDTPSTT
Trigger: AGTGGTTGAAGGTGTGTCTTTGAAGAGGCTTGTGGGATCTCCTCATTCTCTTTTGCTTCCTGGTGATGAAGTGAATGGTTTTGTTCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 90 bp GTGTTCGAAGCTGAATTGTCTTGGCAGCTTTCAGACTCTCAGACTTaGTGGCCCAGTTTTGTAGATAATATTTTGGCTCAACACTTTGGG +
Preference number: 1 (lower is better)
Translates to: VFEAELSWQLSDSQT*WPSFVDNILAQHFG
Trigger: CCCAAAGTGTTGAGCCAAAATATTATCTACAAAACTGGGCCATCAAGTCTGAGAGTCTGAAAGCTGCCAAGACAATTCAGCTTCGAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 90 bp GCTGTCAGGAACGTAACACAGAAACAACCCACATGGTCACATCACTaGAGAAGCTTACCGAAGGGAAACAGACCACTTACATTGTTATTT +
Preference number: 1 (lower is better)
Translates to: AVRNVTQKQPTWSHH*RSLPKGNRPLTLLF
Trigger: AAATAACAATGTAAGTGGTCTGTTTCCCTTCGGTAAGCTTCTTCAGTGATGTGACCATGTGGGTTGTTTCTGTGTTACGTTCCTGACAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp TTGTCTCAACCTTACAAATTCAACTTTGCTAAAGATGGAGGACTCTaGGAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTT +
Preference number: 1 (lower is better)
Translates to: LSQPYKFNFAKDGGL*EITKGSACEVYRGL
Trigger: AAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTCCCAGAGTCCTCCATCTTTAGCAAAGTTGAATTTGTAAGGTTGAGACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp GGTTTTCAAGGGAAATACACAGAACATATAACCAGGCAGAGTATTTaGGGTTCACATTGGTCAAGGGTTTGTAGAGCGACTTCTGGAAAA +
Preference number: 1 (lower is better)
Translates to: GFQGKYTEHITRQSI*GSHWSRVCRATSGK
Trigger: TTTTCCAGAAGTCGCTCTACAAACCCTTGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCCTTGAAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp CTCTATAAGTGTGCCAGTATGTGTATCTGTGTGGGAATAGTTCCATaGTTTTCAAGGGAAATACACAGAACATATAACCAGGCAGAGTAT +
Preference number: 1 (lower is better)
Translates to: LYKCASMCICVGIVP*FSREIHRTYNQAEY
Trigger: ATACTCTGCCTGGTTATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACACATACTGGCACACTTATAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 90 bp AATGGAGAGCTTTGCTTTAGCAGTCACAGGAGACAATGTACCTGCTaGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACTTTGCT +
Preference number: 1 (lower is better)
Translates to: NGELCFSSHRRQCTC*RIRFLSQPYKFNFA
Trigger: AGCAAAGTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCTCCTGTGACTGCTAAAGCAAAGCTCTCCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 90 bp AACAATGGAGAGCTTTGCTTTAGCAGTCACAGGAGACAATGTACCTaGTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACTTT +
Preference number: 1 (lower is better)
Translates to: NNGELCFSSHRRQCT*WRIRFLSQPYKFNF
Trigger: AAAGTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCTCCTGTGACTGCTAAAGCAAAGCTCTCCATTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 90 bp CTAAGTTACATCCATATTAAACCCATTCCTAGGAACATATTTCTTTaGTCCTTTGTAGGAAAGAAAGAGCCAGTCTGTAACGCTGTCATG +
Preference number: 1 (lower is better)
Translates to: LSYIHIKPIPRNIFL*SFVGKKEPVCNAVM
Trigger: CATGACAGCGTTACAGACTGGCTCTTTCTTTCCTACAAAGGATCAAAGAAATATGTTCCTAGGAATGGGTTTAATATGGATGTAACTTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCGTCATCTGTCTGCTGTaGGTGAGGGGTCACCACCAG +
Preference number: 2 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTVICLL*VRGHHQ
Trigger: CTGGTGGTGACCCCTCACCCACAGCAGACAGATGAC...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR TCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCTCCAAAGGAGGGGCCTaGGTGTTAGACATTTTGCTA +
Preference number: 2 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPSKGGA*VLDILL
Trigger: TAGCAAAATGTCTAACACTCAGGCCCCTCCTTTGGA...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCAGCTACTTCGGAGGCTaGGGCAGGAAGATCCCACGT +
Preference number: 2 (lower is better)
Translates to: IPFWILGRDFSDTLSALCSYFGG*GRKIPR
Trigger: ACGTGGGATCTTCCTGCCGCAGCCTCCGAAGTAGCT...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGCCAGGCAGGGAATACTaGTGGGCAGAGGGGGAAGAG +
Preference number: 2 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLPGREY*WAEGEE
Trigger: CTCTTCCCCCTCTGCCCAGCAGTATTCCCTGCCTGG...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATAGGCAGGGAATACTGCTaGGCAGAGGGGGAAGAGCCC +
Preference number: 2 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYIGREYC*AEGEEP
Trigger: GGGCTCTTCCCCCTCTGCCCAGCAGTATTCCCTGCC...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATAAGCCCAGCTGTAGCTaGGCAGTCTCTGCAGCCTCC +
Preference number: 2 (lower is better)
Translates to: EITKGSACEVYRGLQVCYKPSCS*AVSAAS
Trigger: GGAGGCTGCAGAGACTGCCCAGCTACAGCTGGGCTT...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR TCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGACACACACAGTCTTATaGGTTCTTTTCAACCGTAAT +
Preference number: 2 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGTHTVL*VLFNRN
Trigger: ATTACGGTTGAAAAGAACTCATAAGACTGTGTGTGT...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR TCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATGGGCTGAGTCCAGTTTaGGGGAGCACAAGACAGGTT +
Preference number: 2 (lower is better)
Translates to: EITKGSACEVYRGLQVCYGLSPV*GSTRQV
Trigger: AACCTGTCTTGTGCTCCCTCAAACTGGACTCAGCCC...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCTCCTCCCTTGAGCCATaGAAGTCCATCCATCAGATG +
Preference number: 2 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPSSLEP*KSIHQM
Trigger: CATCTGATGGATGGACTTGCATGGCTCAAGGGAGGA...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATCCAGCACTTAGAAGGTaGAGGCGGCAGGATCACAAG +
Preference number: 2 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNPALRR*RRQDHK
Trigger: CTTGTGATCCTGCCGCCTCCACCTTCTAAGTGCTGG...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAGTCATCTGTCTGCTGTaGGTGAGGGGTCACCACCAG +
Preference number: 2 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSVICLL*VRGHHQ
Trigger: CTGGTGGTGACCCCTCACCCACAGCAGACAGATGAC...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATAGAGAGGCAGGCAAGGTaGCAGTTACCCCTCTCTTCA +
Preference number: 2 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYIERQAR*QLPLSS
Trigger: TGAAGAGAGGGGTAACTGCCACCTTGCCTGCCTCTC...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGGCATGCATGAAGCCTTaGGTTCAATCCCCTGTACCA +
Preference number: 2 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLACMKP*VQSPVP
Trigger: TGGTACAGGGGATTGAACCCAAGGCTTCATGCATGC...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCCAGTCCGTGATCATTTaGTTCCATGCCTTTGAGCCT +
Preference number: 2 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPQSVII*FHAFEP
Trigger: AGGCTCAAAGGCATGGAACCAAATGATCACGGACTG...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR TCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCCAAGGACAAGACACATaGGACCCTGTCTCAAAACAA +
Preference number: 2 (lower is better)
Translates to: IPFWILGRDFSDTLSALCQGQDT*DPVSKQ
Trigger: TTGTTTTGAGACAGGGTCTCATGTGTCTTGTCCTTG...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR TCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATAGCCCAGAGATGGGCTaGGTCCAGTTTGAGGGAGCA +
Preference number: 2 (lower is better)
Translates to: CICVGIVPWFSREIHRTYSPEMG*VQFEGA
Trigger: TGCTCCCTCAAACTGGACTCAGCCCATCTCTGGGCT...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATGCTTGCCTTAGCATCTaGAAGGCTCAATCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNACLSI*KAQSLS
Trigger: AGAGAGAGATTGAGCCTTGCAGATGCTAAGGCAAGC...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACAGCTACTTCGGAGGCTaGGGCAGGAAGATCCCACGT +
Preference number: 2 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNSYFGG*GRKIPR
Trigger: ACGTGGGATCTTCCTGCCGCAGCCTCCGAAGTAGCT...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGAGGTTCATCCCATTCTaGATCCTGGGAAGAGACTTT +
Preference number: 2 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLRFIPF*ILGRDF
Trigger: AAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCT...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAAACATTACAGCAAGTTaGGGGAAGAGGAACCGCCAC +
Preference number: 2 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSNITAS*GKRNRH
Trigger: GTGGCGGTTCCTCTTCCCCCAACTTGCTGTAATGTT...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR TCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATCAAGGACAAGACACATaGGACCCTGTCTCAAAACAA +
Preference number: 2 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNQGQDT*DPVSKQ
Trigger: TTGTTTTGAGACAGGGTCTCATGTGTCTTGTCCTTG...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGTCCTCCCTTGAGCCATaGAAGTCCATCCATCAGATG +
Preference number: 2 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLSSLEP*KSIHQM
Trigger: CATCTGATGGATGGACTTGCATGGCTCAAGGGAGGA...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGAAAATCTGGACATGGTaGCACATGCCTTTAATGCCA +
Preference number: 2 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLKIWTW*HMPLMP
Trigger: TGGCATTAAAGGCATGTGCCACCATGTCCAGATTTT...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATCCAGCACTTAGAAGGTaGAGGCGGCAGGATCACAAG +
Preference number: 2 (lower is better)
Translates to: CICVGIVPWFSREIHRTYPALRR*RRQDHK
Trigger: CTTGTGATCCTGCCGCCTCCACCTTCTAAGTGCTGG...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCACATGCTGAGCAAGTGTaGTCTTGCTTTCAGCAGACT +
Preference number: 2 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSHAEQV*SCFQQT
Trigger: AGTCTGCTGAAAGCAAGACCACACTTGCTCAGCATG...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATGAGAGGCAGGCAAGGTaGCAGTTACCCCTCTCTTCA +
Preference number: 2 (lower is better)
Translates to: CICVGIVPWFSREIHRTYERQAR*QLPLSS
Trigger: TGAAGAGAGGGGTAACTGCCACCTTGCCTGCCTCTC...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAAGGAAGAGAGAGAGATaGTGGAGGCCCAGAGTTTCT +
Preference number: 2 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTRKRER*WRPRVS
Trigger: AGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCT...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACATTCTGCTAACCAGCTaGTCCTCCCTTGAGCCATGC +
Preference number: 2 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNILLTS*SSLEPC
Trigger: GCATGGCTCAAGGGAGGAGCAGCTGGTTAGCAGAAT...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATCAAAATGAAGAAAGCTaGGGATATAGCCCAGTGGTA +
Preference number: 2 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNQNEES*GYSPVV
Trigger: TACCACTGGGCTATATCCCCAGCTTTCTTCATTTTG...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCTTAAAAATCTGGACATaGTGGCACATGCCTTTAATG +
Preference number: 2 (lower is better)
Translates to: IPFWILGRDFSDTLSALCLKIWT*WHMPLM
Trigger: CATTAAAGGCATGTGCCACCATGTCCAGATTTTTAA...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAGCATGCATGAAGCCTTaGGTTCAATCCCCTGTACCA +
Preference number: 2 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTACMKP*VQSPVP
Trigger: TGGTACAGGGGATTGAACCCAAGGCTTCATGCATGC...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATTCCCATTCTGGATCCTaGGAAGAGACTTTTCAGATA +
Preference number: 2 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNSHSGS*EETFQI
Trigger: TATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGA...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAAACATTACAGCAAGTTaGGGGAAGAGGAACCGCCAC +
Preference number: 2 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTNITAS*GKRNRH
Trigger: GTGGCGGTTCCTCTTCCCCCAACTTGCTGTAATGTT...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGAAGAGAGAGAGATGCTaGAGGCCCAGAGTTTCTCAT +
Preference number: 2 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLKRERC*RPRVSH
Trigger: ATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTT...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATAGACAGACAACAGTCTaGAGAAGTATTCTGCTAACC +
Preference number: 2 (lower is better)
Translates to: EITKGSACEVYRGLQVCYRQTTV*RSILLT
Trigger: GGTTAGCAGAATACTTCTCCAGACTGTTGTCTGTCT...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CAA 90 bp AGCACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTaGGCCTACATACCCTCTTTTGTATGTACTAAGAACCATAGTGAT +
Preference number: 2 (lower is better)
Translates to: STVTEPLSTQLHLTF*AYIPSFVCTKNHSD
Trigger: ATCACTATGGTTCTTAGTACATACAAAAGAGGGTATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CAA 90 bp CCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACTTaGCTAAAGATGGAGGACTCTGGGAGATTACAAAGGGATCAGCCT +
Preference number: 2 (lower is better)
Translates to: PAGEYDFCLNLTNST*LKMEDSGRLQRDQP
Trigger: AGGCTGATCCCTTTGTAATCTCCCAGAGTCCTCCATCTTTAGCAAAGTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATGTCTCTTATAGACAGTaGATCTCTTTCCTGATGGAT +
Preference number: 2 (lower is better)
Translates to: EITKGSACEVYRGLQVCYVSYRQ*ISFLMD
Trigger: ATCCATCAGGAAAGAGATCCACTGTCTATAAGAGAC...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACGCTTGCCTTAGCATCTaGAAGGCTCAATCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNACLSI*KAQSLS
Trigger: AGAGAGAGATTGAGCCTTGCAGATGCTAAGGCAAGC...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR GCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGAACAATGGAGAGCTTTaGTTTAGCAGTCACAGGAGA +
Preference number: 2 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLNNGEL*FSSHRR
Trigger: TCTCCTGTGACTGCTAAAGCAAAGCTCTCCATTGTT...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGCAAAATGAAGAAAGCTaGGGATATAGCCCAGTGGTA +
Preference number: 2 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLQNEES*GYSPVV
Trigger: TACCACTGGGCTATATCCCCAGCTTTCTTCATTTTG...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATTTAAAAATCTGGACATaGTGGCACATGCCTTTAATG +
Preference number: 2 (lower is better)
Translates to: EITKGSACEVYRGLQVCYLKIWT*WHMPLM
Trigger: CATTAAAGGCATGTGCCACCATGTCCAGATTTTTAA...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CAA 90 bp TTTAGCAGTCACAGGAGACAATGTACCTGCTGGAGAATACGATTTTaGTCTCAACCTTACAAATTCAACTTTGCTAAAGATGGAGGACTC +
Preference number: 2 (lower is better)
Translates to: FSSHRRQCTCWRIRF*SQPYKFNFAKDGGL
Trigger: GAGTCCTCCATCTTTAGCAAAGTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCTCCTGTGACTGCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR TCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAACACACACAGTCTTATaGGTTCTTTTCAACCGTAAT +
Preference number: 2 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSTHTVL*VLFNRN
Trigger: ATTACGGTTGAAAAGAACTCATAAGACTGTGTGTGT...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAACCTCTACACAGACATaGCTGGTTCTAAGGATGAAA +
Preference number: 2 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTTSTQT*LVLRMK
Trigger: TTTCATCCTTAGAACCAGCCATGTCTGTGTAGAGGT...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACAGGTTCATCCCATTCTaGATCCTGGGAAGAGACTTT +
Preference number: 2 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNRFIPF*ILGRDF
Trigger: AAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCT...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGGATCATAACTACTATTaGGCCACTGATTGTGACCAA +
Preference number: 2 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLDHNYY*ATDCDQ
Trigger: TTGGTCACAATCAGTGGCCCAATAGTAGTTATGATC...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGGTGGGAATAGTTCCATaGTTTTCAAGGGAAATACAC +
Preference number: 2 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLVGIVP*FSREIH
Trigger: GTGTATTTCCCTTGAAAACCATGGAACTATTCCCAC...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATAAAATCTGGACATGGTaGCACATGCCTTTAATGCCA +
Preference number: 2 (lower is better)
Translates to: CICVGIVPWFSREIHRTYKIWTW*HMPLMP
Trigger: TGGCATTAAAGGCATGTGCCACCATGTCCAGATTTT...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACACCTCTACACAGACATaGCTGGTTCTAAGGATGAAA +
Preference number: 2 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNTSTQT*LVLRMK
Trigger: TTTCATCCTTAGAACCAGCCATGTCTGTGTAGAGGT...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGAGACAATGTACCTGCTaGAGAATACGATTTTTGTCT +
Preference number: 2 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLRQCTC*RIRFLS
Trigger: AGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACGTTTCTCATACAATGTaGAATGTTCTCCAAAGGAGG +
Preference number: 2 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNVSHTM*NVLQRR
Trigger: CCTCCTTTGGAGAACATTCCACATTGTATGAGAAAC...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 72 bp GAGGGGGAAGAGCCCAGAGATGGGCTGAGTCCAGTTTaGGGGAGCACAAGACAGGTTCATCCCATTCTGGAT +
Preference number: 3 (lower is better)
Translates to: EGEEPRDGLSPV*GSTRQVHPILD
Trigger: ATCCAGAATGGGATGAACCTGTCTTGTGCTCCCTCAAACTGGACTCAGCCCATCTCTGGGCTCTTCCCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 72 bp TTTGTCACAACCTGTAATCTCAGCTACTTCGGAGGCTaGGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTC +
Preference number: 3 (lower is better)
Translates to: FVTTCNLSYFGG*GRKIPRCSRPV
Trigger: GACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCCGAAGTAGCTGAGATTACAGGTTGTGACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp ATGCAAGTAGAACTGTTTCCAGTCATCTGTCTGCTGTaGGTGAGGGGTCACCACCAGGCAGGGAATACTGCT +
Preference number: 3 (lower is better)
Translates to: MQVELFPVICLL*VRGHHQAGNTA
Trigger: AGCAGTATTCCCTGCCTGGTGGTGACCCCTCACCCACAGCAGACAGATGACTGGAAACAGTTCTACTTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 72 bp CAGACAACAGTCTGGAGAAGTATTCTGCTAACCAGCTaGTCCTCCCTTGAGCCATGCAAGTCCATCCATCAG +
Preference number: 3 (lower is better)
Translates to: QTTVWRSILLTS*SSLEPCKSIHQ
Trigger: CTGATGGATGGACTTGCATGGCTCAAGGGAGGAGCAGCTGGTTAGCAGAATACTTCTCCAGACTGTTGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp AACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTaGCAGTTACCCCTCTCTTCAAGTGGACTCACATGT +
Preference number: 3 (lower is better)
Translates to: NCVTHYTERQAR*QLPLSSSGLTC
Trigger: ACATGTGAGTCCACTTGAAGAGAGGGGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp GAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTaGAATGTTCTCCAAAGGAGGGGCCTGAGTGTTAGA +
Preference number: 3 (lower is better)
Translates to: ERCWRPRVSHTM*NVLQRRGLSVR
Trigger: TCTAACACTCAGGCCCCTCCTTTGGAGAACATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CAA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCGGGAATGTAGTTCAGTaGGTAGAGTATTTGGTTAGC +
Preference number: 3 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTGNVVQ*VEYLVS
Trigger: GCTAACCAAATACTCTACCAACTGAACTACATTCCC...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CAA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCCTTACAAATTCAACTTaGCTAAAGATGGAGGACTCT +
Preference number: 3 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPLTNST*LKMEDS
Trigger: AGAGTCCTCCATCTTTAGCAAAGTTGAATTTGTAAG...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 72 bp CCATCTCAACTATACACATGTCTAGGAGGCAAAACCTaGCCCAGCATTACTCTCCTCACAGTGCATAACCTG +
Preference number: 3 (lower is better)
Translates to: PSQLYTCLGGKT*PSITLLTVHNL
Trigger: CAGGTTATGCACTGTGAGGAGAGTAATGCTGGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 72 bp TTTGTGTTGGCTCACAGCTTAGAAGTTTCCAGTCCGTaGTCATTTGGTTCCATGCCTTTGAGCCTGTGGCAA +
Preference number: 3 (lower is better)
Translates to: FVLAHSLEVSSP*SFGSMPLSLWQ
Trigger: TTGCCACAGGCTCAAAGGCATGGAACCAAATGATCACGGACTGGAAACTTCTAAGCTGTGAGCCAACACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp CAGTTTGAGGGAGCACAAGACAGGTTCATCCCATTCTaGATCCTGGGAAGAGACTTTTCAGATACACTGTCT +
Preference number: 3 (lower is better)
Translates to: QFEGAQDRFIPF*ILGRDFSDTLS
Trigger: AGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGTCTTGTGCTCCCTCAAACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp GAGGCAGGCAAGGTGGCAGTTACCCCTCTCTTCAAGTaGACTCACATGTACTATTCTGTAAGTAAAAGGAAG +
Preference number: 3 (lower is better)
Translates to: EAGKVAVTPLFK*THMYYSVSKRK
Trigger: CTTCCTTTTACTTACAGAATAGTACATGTGAGTCCACTTGAAGAGAGGGGTAACTGCCACCTTGCCTGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CAA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATCAGTTGGTAGAGTATTaGGTTAGCATGCATGAAGCC +
Preference number: 3 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNQLVEY*VSMHEA
Trigger: GGCTTCATGCATGCTAACCAAATACTCTACCAACTG...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CAA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAGAACATTACAGCAAGTaGGGGGAAGAGGAACCGCCA +
Preference number: 3 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTEHYSK*GEEEPP
Trigger: TGGCGGTTCCTCTTCCCCCAACTTGCTGTAATGTTC...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 72 bp AACGTAACACAGAAACAACCCACATGGTCACATCACTaGAGAAGCTTACCGAAGGGAAACAGACCACTTACA +
Preference number: 3 (lower is better)
Translates to: NVTQKQPTWSHH*RSLPKGNRPLT
Trigger: TGTAAGTGGTCTGTTTCCCTTCGGTAAGCTTCTTCAGTGATGTGACCATGTGGGTTGTTTCTGTGTTACGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 72 bp CTCATAACTCAACTCAGAGATCAAACCACTTTAACGTaGAAAGGCACCTTCAGGACTTTGGCTGTCAGGAAC +
Preference number: 3 (lower is better)
Translates to: LITQLRDQTTLT*KGTFRTLAVRN
Trigger: GTTCCTGACAGCCAAAGTCCTGAAGGTGCCTTTTCACGTTAAAGTGGTTTGATCTCTGAGTTGAGTTATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 72 bp AAACCATTCACTTCATCACCAGGAAGCAAAAGAGAATaGGGAGATCCCACAAGCCTCTTCAAAGACACACCT +
Preference number: 3 (lower is better)
Translates to: KPFTSSPGSKRE*GDPTSLFKDTP
Trigger: AGGTGTGTCTTTGAAGAGGCTTGTGGGATCTCCTCATTCTCTTTTGCTTCCTGGTGATGAAGTGAATGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTaGGGTTCACATTGGTCAAGGGTTTGTAGAGCGACT +
Preference number: 3 (lower is better)
Translates to: GKYTEHITRQSI*GSHWSRVCRAT
Trigger: AGTCGCTCTACAAACCCTTGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CAA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCACAGTTGGTAGAGTATTaGGTTAGCATGCATGAAGCC +
Preference number: 3 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSQLVEY*VSMHEA
Trigger: GGCTTCATGCATGCTAACCAAATACTCTACCAACTG...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR TCA 72 bp GCTGAATTGTCTTGGCAGCTTTCAGACTCTCAGACTTaGTGGCCCAGTTTTGTAGATAATATTTTGGCTCAA +
Preference number: 3 (lower is better)
Translates to: AELSWQLSDSQT*WPSFVDNILAQ
Trigger: TTGAGCCAAAATATTATCTACAAAACTGGGCCATCAAGTCTGAGAGTCTGAAAGCTGCCAAGACAATTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR GCA 72 bp GAGCTTTGCTTTAGCAGTCACAGGAGACAATGTACCTaGTGGAGAATACGATTTTTGTCTCAACCTTACAAA +
Preference number: 3 (lower is better)
Translates to: ELCFSSHRRQCT*WRIRFLSQPYK
Trigger: TTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCTCCTGTGACTGCTAAAGCAAAGCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp TGTGCCAGTATGTGTATCTGTGTGGGAATAGTTCCATaGTTTTCAAGGGAAATACACAGAACATATAACCAG +
Preference number: 3 (lower is better)
Translates to: CASMCICVGIVP*FSREIHRTYNQ
Trigger: CTGGTTATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACACATACTGGCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CCA 72 bp CTTTGCTTTAGCAGTCACAGGAGACAATGTACCTGCTaGAGAATACGATTTTTGTCTCAACCTTACAAATTC +
Preference number: 3 (lower is better)
Translates to: LCFSSHRRQCTC*RIRFLSQPYKF
Trigger: GAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCTCCTGTGACTGCTAAAGCAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CAA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATGGGAATGTAGTTCAGTaGGTAGAGTATTTGGTTAGC +
Preference number: 3 (lower is better)
Translates to: CICVGIVPWFSREIHRTYGNVVQ*VEYLVS
Trigger: GCTAACCAAATACTCTACCAACTGAACTACATTCCC...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR-3UTR CAA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACCCTACATACCCTCTTTaGTATGTACTAAGAACCATA +
Preference number: 3 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNPTYPL*YVLRTI
Trigger: TATGGTTCTTAGTACATACAAAAGAGGGTATGTAGG...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGCTGCTGGTCGATGTCTaGTCCTCTCTGAGCGAGGAC +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGLLVDV*SSLSED
Trigger: GTCCTCGCTCAGAGAGGAGCAGACATCGACCAGCAG...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGCTGTGGCCGAAGCTGTaGAGCAAGAGGAGCTTCGCA +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGLWPKL*SKRSFA
Trigger: TGCGAAGCTCCTCTTGCTCCACAGCTTCGGCCACAG...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCTCTGGCAGCCACACCTaGAGCAGGAAATGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPSGSHT*SRKWSP
Trigger: GGGAGACCATTTCCTGCTCCAGGTGTGGCTGCCAGA...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGGAAGAGCTGTGTTTCTaGACGGTCCCCACTGCTGGT +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGEELCF*TVPTAG
Trigger: ACCAGCAGTGGGGACCGTTCAGAAACACAGCTCTTC...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCGGGCAGTCAGATGATTaGTGGCCCCACATTTTGGGC +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPGQSDD*WPHILG
Trigger: GCCCAAAATGTGGGGCCAGCAATCATCTGACTGCCC...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCCCAGTAAAGTGGCGATaGTCTCCCTTCCTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPPVKWR*SPFLPG
Trigger: GCCTGGAAGGAAGGGAGAGCATCGCCACTTTACTGG...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGGGCTGGGATTTCCAGTaGACTCTCTGCGAAGCGAAG +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGGWDFQ*TLCEAK
Trigger: CTTCGCTTCGCAGAGAGTCCACTGGAAATCCCAGCC...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGCGGGAAGCCAGACAGTaGGCACACTTGAGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGREARQ*AHLRKS
Trigger: AGACTTCCTCAAGTGTGCCCACTGTCTGGCTTCCCG...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGCCAGGTGGAGAAAGTTaGTCCTCCAGACCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGPGGES*SSRPWV
Trigger: CACCCAAGGTCTGGAGGACCAACTTTCTCCACCTGG...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCCTCCAGTTCCTTCTTTaGCAGGAGCTTGCCAGATGG +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPLQFLL*QELARW
Trigger: CCATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAG...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCCCCCATCCTGGGCTCTaGAATCAAGGCCCGGAATTC +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTPHPGL*NQGPEF
Trigger: GAATTCCGGGCCTTGATTGCAGAGCCCAGGATGGGG...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCTCACCAAGCTGGACCTaGTGTCATATAGCCCGTTCC +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPSPSWT*CHIARS
Trigger: GGAACGGGCTATATGACAGCAGGTCCAGCTTGGTGA...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCACAGCAGTTAGGGTCTaGTCCTTCATCCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPTAVRV*SFIQQL
Trigger: CAGCTGCTGGATGAAGGAGCAGACCCTAACTGCTGT...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGCATACTGCCACATTCTaGACACAGGCCCATCTGCTG +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGHTATF*TQAHLL
Trigger: CAGCAGATGGGCCTGTGTGCAGAATGTGGCAGTATG...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
3UTR CAA 72 bp CAGCTACTTCGGAGGCTGCGGCAGGAAGATCCCACGTaGTTCAAGGCCTGTCTATGCTATAGGGGGAGTTCA +
Preference number: 4 (lower is better)
Translates to: QLLRRLRQEDPT*FKACLCYRGSS
Trigger: TGAACTCCCCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCCGAAGTAGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCCAAAGAGAGAAGAGGTaGGGTCATCTCCCATCTCCA +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPQREKR*GHLPSP
Trigger: TGGAGATGGGAGATGACCTCACCTCTTCTCTCTTTG...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGAGCAAATGGATCAGATaGACGGGAAGCCAGACAGTG +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGSKWIR*TGSQTV
Trigger: CACTGTCTGGCTTCCCGTCCATCTGATCCATTTGCT...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCACAGAAGCGAGCAAATaGATCAGATGGACGGGAAGC +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPTEASK*IRWTGS
Trigger: GCTTCCCGTCCATCTGATCCATTTGCTCGCTTCTGT...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCACCCACTGGCAGATGTaGGCAAAGGGACGTTTAGGG +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTTHWQM*AKGRLG
Trigger: CCCTAAACGTCCCTTTGCCCACATCTGCCAGTGGGT...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCGACGGCTGTGAGGACTaGCCTGTGGTCACTCATCTT +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTDGCED*PVVTHL
Trigger: AAGATGAGTGACCACAGGCCAGTCCTCACAGCCGTC...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCTCACCAAGCTGGACCTaGTGTCATATAGCCCGTTCC +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTSPSWT*CHIARS
Trigger: GGAACGGGCTATATGACAGCAGGTCCAGCTTGGTGA...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCTCCCTCATGGTAGGCTaGGATTTCCAGTGGACTCTC +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTSLMVG*DFQWTL
Trigger: GAGAGTCCACTGGAAATCCCAGCCTACCATGAGGGA...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp CACGTGGATGTCTCTGGTAGGCAGGAAGGTGCAGCTTCATTTCTCACAGGGCCCATAGCCAAATATGGGTaGGACAGGAGCTCCACATTC +
Preference number: 4 (lower is better)
Translates to: HVDVSGRQEGAASFLTGPIAKYG*DRSSTF
Trigger: GAATGTGGAGCTCCTGTCCCACCCATATTTGGCTAT...GGGCCCTGTGAGAAATGAAGCTGCACCTTCCTGCCTACCAGAGACATCCACGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGAGATGGGGGTGTTCATaGGAACCATACTGCCACATT +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGRWGCS*EPYCHI
Trigger: AATGTGGCAGTATGGTTCCCATGAACACCCCCATCT...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp ACAGGTTCATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGGCCTCCCAGAGGTTCTaGCAGCCACACCTGGAGCAG +
Preference number: 4 (lower is better)
Translates to: TGSSHSGSWEETFQIHCLASQRF*QPHLEQ
Trigger: CTGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGC...CAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GTGGCACATGCCTTTAATGCCAGCATTTGGGAGGCAGAGACAGCCTGTGTGTTTCCAGGTGGAGAAAGTTaGTCCTCCAGACCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: VAHAFNASIWEAETACVFPGGES*SSRPWV
Trigger: CACCCAAGGTCTGGAGGACCAACTTTCTCCACCTGG...AAACACACAGGCTGTCTCTGCCTCCCAAATGCTGGCATTAAAGGCATGTGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GTGGCACATGCCTTTAATGCCAGCATTTGGGAGGCAGAGACAGCCTGTGTGTTTAAGCGGGCAGTCAGATaGTTGCTGGCCCCACATTTT +
Preference number: 4 (lower is better)
Translates to: VAHAFNASIWEAETACVFKRAVR*LLAPHF
Trigger: AAAATGTGGGGCCAGCAATCATCTGACTGCCCGCTT...AAACACACAGGCTGTCTCTGCCTCCCAAATGCTGGCATTAAAGGCATGTGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATTCCTGCCTCTGCCTGTaGGAAGCCGCCTCCAGTTCC +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYSCLCL*EAASSS
Trigger: GGAACTGGAGGCGGCTTCTCACAGGCAGAGGCAGGA...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATGCCTCCCAGAGGTTCTaGCAGCCACACCTGGAGCAG +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYASQRF*QPHLEQ
Trigger: CTGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGC...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCGCTGGCCCCACATTTTaGGCAGACAGAGTGGCTAGC +
Preference number: 4 (lower is better)
Translates to: IPFWILGRDFSDTLSALCAGPTF*ADRVAS
Trigger: GCTAGCCACTCTGTCTGCCCAAAATGTGGGGCCAGC...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCGGGGTCCCTCACAGGTaGCACAGTATCTCAGATGAG +
Preference number: 4 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPGVPHR*HSISDE
Trigger: CTCATCTGAGATACTGTGTCACCTGTGAGGGACCCC...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCCAGAGTTTTAGGGTCTaGTCTTTCGCCTACCTTGAG +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTQSFRV*SFAYLE
Trigger: CTCAAGGTAGGCGAAAGAGCAGACCCTAAAACTCTG...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCTCCCAGTGCCACAGGTaGGACAGATTACCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: IPFWILGRDFSDTLSALCSQCHR*DRLPSP
Trigger: AGGAGAGGGTAATCTGTCGCACCTGTGGCACTGGGA...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATGGGACGTTTAGGGACTaGCAGGCAGATCGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNGTFRD*QADRGS
Trigger: TGAGCCCCGATCTGCCTGGCAGTCCCTAAACGTCCC...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCAGATGGGGGTGTTCATaGGAACCATACTGCCACATT +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTRWGCS*EPYCHI
Trigger: AATGTGGCAGTATGGTTCCCATGAACACCCCCATCT...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGTCTGGCAGCCACACCTaGAGCAGGAAATGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLSGSHT*SRKWSP
Trigger: GGGAGACCATTTCCTGCTCCAGGTGTGGCTGCCAGA...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGAACGGTCCCCACTGCTaGTCGATGTCTGCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLNGPHC*SMSAPL
Trigger: GAGAGGAGCAGACATCGACCAGCAGTGGGGACCGTT...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCGGGTGTAATATATGTTaGCATCTGGGGTGTCGGATT +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTGCNIC*HLGCRI
Trigger: AATCCGACACCCCAGATGTCAACATATATTACACCC...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp ACAGGTTCATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCGTTCCCACCTTCGGTaGCACTGCTCAGAAAGTGGT +
Preference number: 4 (lower is better)
Translates to: TGSSHSGSWEETFQIHCLRSHLR*HCSESG
Trigger: ACCACTTTCTGAGCAGTGTCACCGAAGGTGGGAACG...CAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp ACAGGTTCATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGATGTCTGCTCCTCTCTaGGCGAGGACTGGAATGGCT +
Preference number: 4 (lower is better)
Translates to: TGSSHSGSWEETFQIHCLMSAPL*ARTGMA
Trigger: AGCCATTCCAGTCCTCGCTCAGAGAGGAGCAGACAT...CAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GTGGCACATGCCTTTAATGCCAGCATTTGGGAGGCAGAGACAGCCTGTGTGTTTTTCCAGTGGACTCTCTaGGAAGCGAAGATCTTTCAG +
Preference number: 4 (lower is better)
Translates to: VAHAFNASIWEAETACVFFQWTL*EAKIFQ
Trigger: CTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAA...AAACACACAGGCTGTCTCTGCCTCCCAAATGCTGGCATTAAAGGCATGTGCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCCATACTGCCACATTCTaGACACAGGCCCATCTGAGC +
Preference number: 4 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPHTATF*TQAHLS
Trigger: GCTCAGATGGGCCTGTGTGCAGAATGTGGCAGTATG...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081982.12
CDS-3UTR GCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATACCCCATCCTGGGCTCTaGAATCAAGGCCCGGAATTC +
Preference number: 4 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYIPHPGL*NQGPEF
Trigger: GAATTCCGGGCCTTGATTGCAGAGCCCAGGATGGGG...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp ACAGGTTCATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCCAGTAAAGTGGCGATaGTCTCCCTTCCTTCCAGGC +
Preference number: 4 (lower is better)
Translates to: TGSSHSGSWEETFQIHCLPVKWR*SPFLPG
Trigger: GCCTGGAAGGAAGGGAGAGCATCGCCACTTTACTGG...CAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGCGCACACCACACAGATaGGGGTGTTCATGGGAACCA +
Preference number: 4 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLRTPHR*GCSWEP
Trigger: TGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCG...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATGCTGGCCCCACATTTTaGGCAGACAGAGTGGCTAGC +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYAGPTF*ADRVAS
Trigger: GCTAGCCACTCTGTCTGCCCAAAATGTGGGGCCAGC...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATAACGGTCCCCACTGCTaGTCGATGTCTGCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYNGPHC*SMSAPL
Trigger: GAGAGGAGCAGACATCGACCAGCAGTGGGGACCGTT...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGAGGCTGCGGCAGGAAGATCCCACGTTGTTCAAGGCCTGTCTATGCTATAGGGATGTCATATGCTGTCTaGCCTCTTGTGTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: GGCGRKIPRCSRPVYAIGMSYAV*PLVFFF
Trigger: AAAGAAGAACACAAGAGGCCAGACAGCATATGACAT...CCCTATAGCATAGACAGGCCTTGAACAACGTGGGATCTTCCTGCCGCAGCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCTTAGCTTTTCCAGGTTaGGGCACTCGCAGTGGTATG +
Preference number: 4 (lower is better)
Translates to: IPFWILGRDFSDTLSALCLAFPG*GTRSGM
Trigger: CATACCACTGCGAGTGCCTCAACCTGGAAAAGCTAA...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCTCTGAGCATAGGACCTaGGGTGAGCAGAGATGTGAT +
Preference number: 4 (lower is better)
Translates to: IPFWILGRDFSDTLSALCSEHRT*GEQRCD
Trigger: ATCACATCTCTGCTCACCTCAGGTCCTATGCTCAGA...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATCGTTCCCACCTTCGGTaGCACTGCTCAGAAAGTGGT +
Preference number: 4 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNRSHLR*HCSESG
Trigger: ACCACTTTCTGAGCAGTGTCACCGAAGGTGGGAACG...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATCAGTCTTCCTTTCCCTaGGGAGCCAACTTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYQSSFP*GANFLQ
Trigger: CTGGAGGAAGTTGGCTCCTCAGGGAAAGGAAGACTG...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATAATGTCTGCTCCTCTCTaGGCGAGGACTGGAATGGCT +
Preference number: 4 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYIMSAPL*ARTGMA
Trigger: AGCCATTCCAGTCCTCGCTCAGAGAGGAGCAGACAT...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACCACAGGCCCATCTGCTaGGCCCCTTCTGGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNHRPIC*APSGGG
Trigger: TCCACCCCCAGAAGGGGCTCAGCAGATGGGCCTGTG...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATTCCCAGTGCCACAGGTaGGACAGATTACCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYSQCHR*DRLPSP
Trigger: AGGAGAGGGTAATCTGTCGCACCTGTGGCACTGGGA...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATCGGGAAGCCAGACAGTaGGCACACTTGAGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNREARQ*AHLRKS
Trigger: AGACTTCCTCAAGTGTGCCCACTGTCTGGCTTCCCG...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATGTGAGGACTGGCCTGTaGTCACTCATCTTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNVRTGL*SLIFSC
Trigger: GCAGGAGAAGATGAGTGACCACAGGCCAGTCCTCAC...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCGAGCGAGGACTGGAATaGCTTCATAGTGTTTATTCA +
Preference number: 4 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTERGLE*LHSVYS
Trigger: TGAATAAACACTATGAAGCCATTCCAGTCCTCGCTC...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGCGCAGTGGTATGATCTaGGGGGCACACACTGAGCCA +
Preference number: 4 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLRSGMI*GAHTEP
Trigger: TGGCTCAGTGTGTGCCCCTCAGATCATACCACTGCG...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp TATGCTATAGGGGGAGTTCAAGGCCAGCTTGAGCAACTTTATGAGATCTTATTTGCACTCGCAGTGGTATaGTCTGAGGGGCACACACTG +
Preference number: 4 (lower is better)
Translates to: YAIGGVQGQLEQLYEILFALAVV*SEGHTL
Trigger: CAGTGTGTGCCCCTCAGATCATACCACTGCGAGTGC...AAATAAGATCTCATAAAGTTGCTCAAGCTGGCCTTGAACTCCCCCTATAGCATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATAGGAGCTCCACATTCGTaGCAGAAGCGAGCAAATGGA +
Preference number: 4 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYIGAPHS*QKRANG
Trigger: TCCATTTGCTCGCTTCTGTCACGAATGTGGAGCTCC...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATGGAGCTCCACATTCGTaGCAGAAGCGAGCAAATGGA +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYGAPHS*QKRANG
Trigger: TCCATTTGCTCGCTTCTGTCACGAATGTGGAGCTCC...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATAAGCGGGCAGTCAGATaGTTGCTGGCCCCACATTTT +
Preference number: 4 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNKRAVR*LLAPHF
Trigger: AAAATGTGGGGCCAGCAATCATCTGACTGCCCGCTT...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAGGGCAGTCAGATGATTaGTGGCCCCACATTTTGGGC +
Preference number: 4 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSGQSDD*WPHILG
Trigger: GCCCAAAATGTGGGGCCAGCAATCATCTGACTGCCC...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TATGCTATAGGGGGAGTTCAAGGCCAGCTTGAGCAACTTTATGAGATCTTATTTCTGAACGGTCCCCACTaGTGGTCGATGTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: YAIGGVQGQLEQLYEILFLNGPH*WSMSAP
Trigger: AGGAGCAGACATCGACCAGCAGTGGGGACCGTTCAG...AAATAAGATCTCATAAAGTTGCTCAAGCTGGCCTTGAACTCCCCCTATAGCATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATATTGAGGCACTCGCAGTaGTATGATCTGAGGGGCACA +
Preference number: 4 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYILRHSQ*YDLRGT
Trigger: TGTGCCCCTCAGATCATACCACTGCGAGTGCCTCAA...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATTTGAGGCACTCGCAGTaGTATGATCTGAGGGGCACA +
Preference number: 4 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNLRHSQ*YDLRGT
Trigger: TGTGCCCCTCAGATCATACCACTGCGAGTGCCTCAA...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATGACGATAGCCAAATATaGGTGGGACAGGAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYDDSQI*VGQELH
Trigger: GTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTC...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGCTGTGGCCGAAGCTGTaGAGCAAGAGGAGCTTCGCA +
Preference number: 4 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLLWPKL*SKRSFA
Trigger: TGCGAAGCTCCTCTTGCTCCACAGCTTCGGCCACAG...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATAGGCACTCACCAAGCTaGACCTGCTGTCATATAGCC +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYRHSPS*TCCHIA
Trigger: GGCTATATGACAGCAGGTCCAGCTTGGTGAGTGCCT...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCGGGTGTAATATATGTTaGCATCTGGGGTGTCGGATT +
Preference number: 4 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPGCNIC*HLGCRI
Trigger: AATCCGACACCCCAGATGTCAACATATATTACACCC...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATACACAGTATCTCAGATaGGCAGGATTCCCAGTGCCA +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYTQYLR*AGFPVP
Trigger: TGGCACTGGGAATCCTGCTCATCTGAGATACTGTGT...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCAGTAGAGTTGCTTCGTaGAGAGCTGTGTTTCTGAAC +
Preference number: 4 (lower is better)
Translates to: IPFWILGRDFSDTLSALCSRVAS*RAVFLN
Trigger: GTTCAGAAACACAGCTCTTCACGAAGCAACTCTACT...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AAAAGGAAGAGAGAGAGATGCTGGAGGCCCAGAGTTTCTCATACAATGTGGAATCAAAGAGAGAAGAGGTaGGGTCATCTCCCATCTCCA +
Preference number: 4 (lower is better)
Translates to: KRKRERCWRPRVSHTMWNQREKR*GHLPSP
Trigger: TGGAGATGGGAGATGACCTCACCTCTTCTCTCTTTG...ATTCCACATTGTATGAGAAACTCTGGGCCTCCAGCATCTCTCTCTCTTCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCGGAAGTCAGGTTTGCTaGCATCCAGGGTGTAATATA +
Preference number: 4 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPGSQVC*HPGCNI
Trigger: TATATTACACCCTGGATGGCAGCAAACCTGACTTCC...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACGGGACGTTTAGGGACTaGCAGGCAGATCGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNGTFRD*QADRGS
Trigger: TGAGCCCCGATCTGCCTGGCAGTCCCTAAACGTCCC...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCACTCCAGTTCCTTCTTTaGCAGGAGCTTGCCAGATGG +
Preference number: 4 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSLQFLL*QELARW
Trigger: CCATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAG...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACACTGCTGGTCGATGTCTaGTCCTCTCTGAGCGAGGAC +
Preference number: 4 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTLLVDV*SSLSED
Trigger: GTCCTCGCTCAGAGAGGAGCAGACATCGACCAGCAG...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACACTGAACGGTCCCCACTaGTGGTCGATGTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTLNGPH*WSMSAP
Trigger: AGGAGCAGACATCGACCAGCAGTGGGGACCGTTCAG...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATAAGCAAATGGATCAGATaGACGGGAAGCCAGACAGTG +
Preference number: 4 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYISKWIR*TGSQTV
Trigger: CACTGTCTGGCTTCCCGTCCATCTGATCCATTTGCT...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp ACAGGTTCATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGACACTGCTCAGAAAGTaGTCACTGAGATTCACCGAC +
Preference number: 4 (lower is better)
Translates to: TGSSHSGSWEETFQIHCLTLLRK*SLRFTD
Trigger: GTCGGTGAATCTCAGTGACCACTTTCTGAGCAGTGT...CAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CAA 72 bp CTCTTTCCTGATGGATGTCCTGAACATTACAGCAAGTaGGGGGAAGAGGAACCGCCACTAAGAAACAGAATG +
Preference number: 4 (lower is better)
Translates to: LFPDGCPEHYSK*GEEEPPLRNRM
Trigger: CATTCTGTTTCTTAGTGGCGGTTCCTCTTCCCCCAACTTGCTGTAATGTTCAGGACATCCATCAGGAAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACCGCAGTGGTATGATCTaGGGGGCACACACTGAGCCA +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNRSGMI*GAHTEP
Trigger: TGGCTCAGTGTGTGCCCCTCAGATCATACCACTGCG...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAGGGGTCCCTCACAGGTaGCACAGTATCTCAGATGAG +
Preference number: 4 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTGVPHR*HSISDE
Trigger: CTCATCTGAGATACTGTGTCACCTGTGAGGGACCCC...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAACAGAAGCGAGCAAATaGATCAGATGGACGGGAAGC +
Preference number: 4 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSTEASK*IRWTGS
Trigger: GCTTCCCGTCCATCTGATCCATTTGCTCGCTTCTGT...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAGTGAGGACTGGCCTGTaGTCACTCATCTTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTVRTGL*SLIFSC
Trigger: GCAGGAGAAGATGAGTGACCACAGGCCAGTCCTCAC...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp TATGCTATAGGGGGAGTTCAAGGCCAGCTTGAGCAACTTTATGAGATCTTATTTTTAGCTTTTCCAGGTTaGGGCACTCGCAGTGGTATG +
Preference number: 4 (lower is better)
Translates to: YAIGGVQGQLEQLYEILFLAFPG*GTRSGM
Trigger: CATACCACTGCGAGTGCCTCAACCTGGAAAAGCTAA...AAATAAGATCTCATAAAGTTGCTCAAGCTGGCCTTGAACTCCCCCTATAGCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGTCTGAGCATAGGACCTaGGGTGAGCAGAGATGTGAT +
Preference number: 4 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLSEHRT*GEQRCD
Trigger: ATCACATCTCTGCTCACCTCAGGTCCTATGCTCAGA...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCGTACAGGCTCTTGTTTaGGACTTGAATATAGTTCAG +
Preference number: 4 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPVQALV*DLNIVQ
Trigger: CTGAACTATATTCAAGTCTCAAACAAGAGCCTGTAC...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATGAAGAGCTGTGTTTCTaGACGGTCCCCACTGCTGGT +
Preference number: 4 (lower is better)
Translates to: CICVGIVPWFSREIHRTYEELCF*TVPTAG
Trigger: ACCAGCAGTGGGGACCGTTCAGAAACACAGCTCTTC...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATATTAGGAAGTCAGGTTTaGTGCCATCCAGGGTGTAAT +
Preference number: 4 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYILGSQV*CHPGCN
Trigger: ATTACACCCTGGATGGCAGCAAACCTGACTTCCTAA...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACCGCACACCACACAGATaGGGGTGTTCATGGGAACCA +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNRTPHR*GCSWEP
Trigger: TGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCG...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGCAGTCAGATGATTGCTaGCCCCACATTTTGGGCAGA +
Preference number: 4 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLQSDDC*PHILGR
Trigger: TCTGCCCAAAATGTGGGGCCAGCAATCATCTGACTG...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACACCCACTGGCAGATGTaGGCAAAGGGACGTTTAGGG +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNTHWQM*AKGRLG
Trigger: CCCTAAACGTCCCTTTGCCCACATCTGCCAGTGGGT...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACGACGGCTGTGAGGACTaGCCTGTGGTCACTCATCTT +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNDGCED*PVVTHL
Trigger: AAGATGAGTGACCACAGGCCAGTCCTCACAGCCGTC...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAACACTGCTCAGAAAGTaGTCACTGAGATTCACCGAC +
Preference number: 4 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSTLLRK*SLRFTD
Trigger: GTCGGTGAATCTCAGTGACCACTTTCTGAGCAGTGT...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAAGGCACTCACCAAGCTaGACCTGCTGTCATATAGCC +
Preference number: 4 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTRHSPS*TCCHIA
Trigger: GGCTATATGACAGCAGGTCCAGCTTGGTGAGTGCCT...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACAACACAGTATCTCAGATaGGCAGGATTCCCAGTGCCA +
Preference number: 4 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTTQYLR*AGFPVP
Trigger: TGGCACTGGGAATCCTGCTCATCTGAGATACTGTGT...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TATGCTATAGGGGGAGTTCAAGGCCAGCTTGAGCAACTTTATGAGATCTTATTTTTCCAGTGGACTCTCTaGGAAGCGAAGATCTTTCAG +
Preference number: 4 (lower is better)
Translates to: YAIGGVQGQLEQLYEILFFQWTL*EAKIFQ
Trigger: CTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAA...AAATAAGATCTCATAAAGTTGCTCAAGCTGGCCTTGAACTCCCCCTATAGCATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCATGGCCAAGCTGTTATaGATTCTAAACCTTGTTATG +
Preference number: 4 (lower is better)
Translates to: IPFWILGRDFSDTLSALCMAKLL*ILNLVM
Trigger: CATAACAAGGTTTAGAATGCATAACAGCTTGGCCAT...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATACAGCAGTTAGGGTCTaGTCCTTCATCCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: CICVGIVPWFSREIHRTYTAVRV*SFIQQL
Trigger: CAGCTGCTGGATGAAGGAGCAGACCCTAACTGCTGT...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATTCCCTCATGGTAGGCTaGGATTTCCAGTGGACTCTC +
Preference number: 4 (lower is better)
Translates to: CICVGIVPWFSREIHRTYSLMVG*DFQWTL
Trigger: GAGAGTCCACTGGAAATCCCAGCCTACCATGAGGGA...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACGACGATAGCCAAATATaGGTGGGACAGGAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNDDSQI*VGQELH
Trigger: GTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTC...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GAGATTACAAAGGGATCAGCCTGTGAAGTTTACCGAGGCCTTCAGGTATGTTATGAGCGAGGACTGGAATaGCTTCATAGTGTTTATTCA +
Preference number: 4 (lower is better)
Translates to: EITKGSACEVYRGLQVCYERGLE*LHSVYS
Trigger: TGAATAAACACTATGAAGCCATTCCAGTCCTCGCTC...ATAACATACCTGAAGGCCTCGGTAAACTTCACAGGCTGATCCCTTTGTAATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACCAGTCAGATGATTGCTaGCCCCACATTTTGGGCAGA +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNQSDDC*PHILGR
Trigger: TCTGCCCAAAATGTGGGGCCAGCAATCATCTGACTG...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATTGCATCCCAGTAAAGTaGCGATGCTCTCCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: CICVGIVPWFSREIHRTYCIPVK*RCSPFL
Trigger: AAGGAAGGGAGAGCATCGCCACTTTACTGGGATGCA...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACTGCATCCCAGTAAAGTaGCGATGCTCTCCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNCIPVK*RCSPFL
Trigger: AAGGAAGGGAGAGCATCGCCACTTTACTGGGATGCA...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACATAGCCAAATATGGGTaGGACAGGAGCTCCACATTC +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNIAKYG*DRSSTF
Trigger: GAATGTGGAGCTCCTGTCCCACCCATATTTGGCTAT...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAATGTCATATGCTGTCTaGCCTCTTGTGTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSMSYAV*PLVFFF
Trigger: AAAGAAGAACACAAGAGGCCAGACAGCATATGACAT...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATGGAAGTCAGGTTTGCTaGCATCCAGGGTGTAATATA +
Preference number: 4 (lower is better)
Translates to: CICVGIVPWFSREIHRTYGSQVC*HPGCNI
Trigger: TATATTACACCCTGGATGGCAGCAAACCTGACTTCC...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR GCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATTTAGGAAGTCAGGTTTaGTGCCATCCAGGGTGTAAT +
Preference number: 4 (lower is better)
Translates to: CICVGIVPWFSREIHRTYLGSQV*CHPGCN
Trigger: ATTACACCCTGGATGGCAGCAAACCTGACTTCCTAA...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CAA 72 bp ACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTaGGCCTACATACCCTCTTTTGTATGTACTAAGAAC +
Preference number: 4 (lower is better)
Translates to: TEPLSTQLHLTF*AYIPSFVCTKN
Trigger: GTTCTTAGTACATACAAAAGAGGGTATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGATATATGTTGACATCTaGGGTGTCGGATTTCATTTC +
Preference number: 4 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLIYVDI*GVGFHF
Trigger: GAAATGAAATCCGACACCCCAGATGTCAACATATAT...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR TCA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACGTACAGGCTCTTGTTTaGGACTTGAATATAGTTCAG +
Preference number: 4 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNVQALV*DLNIVQ
Trigger: CTGAACTATATTCAAGTCTCAAACAAGAGCCTGTAC...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
3UTR CAA 72 bp GAATACGATTTTTGTCTCAACCTTACAAATTCAACTTaGCTAAAGATGGAGGACTCTGGGAGATTACAAAGG +
Preference number: 4 (lower is better)
Translates to: EYDFCLNLTNST*LKMEDSGRLQR
Trigger: CCTTTGTAATCTCCCAGAGTCCTCCATCTTTAGCAAAGTTGAATTTGTAAGGTTGAGACAAAAATCGTATTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CCA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATATATATGTTGACATCTaGGGTGTCGGATTTCATTTC +
Preference number: 4 (lower is better)
Translates to: CICVGIVPWFSREIHRTYIYVDI*GVGFHF
Trigger: GAAATGAAATCCGACACCCCAGATGTCAACATATAT...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp TGGTCTCCCCATTTCGAGCGGGCGGATGAGGGACTTCATCTCCATTaGACAGCCACTGCTCTTGTGTTGGAGGCAGGGGTCCCTCACAGG +
Preference number: 5 (lower is better)
Translates to: WSPHFERADEGLHLH*TATALVLEAGVPHR
Trigger: CCTGTGAGGGACCCCTGCCTCCAACACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCCTCATCCGCCCGCTCGAAATGGGGAGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp ACCAGTCACAGAAGGATGCCTCCCAGAGGTTCTGGCAGCCACACCTaGAGCAGGAAATGGTCTCCCCATTTCGAGCGGGCGGATGAGGGA +
Preference number: 5 (lower is better)
Translates to: TSHRRMPPRGSGSHT*SRKWSPHFERADEG
Trigger: TCCCTCATCCGCCCGCTCGAAATGGGGAGACCATTTCCTGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGCATCCTTCTGTGACTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CTGCTTTCTCCAGTAGCCTCTTCCCGGGCTGACGGCTGTGAGGACTaGCCTGTGGTCACTCATCTTCTCCTGCCTCTGCCTGTGAGAAGC +
Preference number: 5 (lower is better)
Translates to: LLSPVASSRADGCED*PVVTHLLLPLPVRS
Trigger: GCTTCTCACAGGCAGAGGCAGGAGAAGATGAGTGACCACAGGCCAGTCCTCACAGCCGTCAGCCCGGGAAGAGGCTACTGGAGAAAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp TCTGCCTGTGAGAAGCCGCCTCCAGTTCCTTCTTTGCCAGGAGCTTaGCAGATGGGTAGAACAGGCCAGAGGTCTGAGTGCCCGTGTCCT +
Preference number: 5 (lower is better)
Translates to: SACEKPPPVPSLPGA*QMGRTGQRSECPCP
Trigger: AGGACACGGGCACTCAGACCTCTGGCCTGTTCTACCCATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAGGCGGCTTCTCACAGGCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp GAGCTTCGCACACCACACAGATGGGGGTGTTCATGGGAACCATACTaGCACATTCTGCACACAGGCCCATCTGCTGAGCCCCTTCTGGGG +
Preference number: 5 (lower is better)
Translates to: ELRTPHRWGCSWEPY*HILHTGPSAEPLLG
Trigger: CCCCAGAAGGGGCTCAGCAGATGGGCCTGTGTGCAGAATGTGGCAGTATGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCGAAGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS CCA 90 bp AGGATGCCTCCCAGAGGTTCTGGCAGCCACACCTGGAGCAGGAAATaGTCTCCCCATTTCGAGCGGGCGGATGAGGGACTTCATCTCCAT +
Preference number: 5 (lower is better)
Translates to: RMPPRGSGSHTWSRK*SPHFERADEGLHLH
Trigger: ATGGAGATGAAGTCCCTCATCCGCCCGCTCGAAATGGGGAGACCATTTCCTGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGCATCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp AGCATGGCTCCACACCAGTCACAGAAGGATGCCTCCCAGAGGTTCTaGCAGCCACACCTGGAGCAGGAAATGGTCTCCCCATTTCGAGCG +
Preference number: 5 (lower is better)
Translates to: SMAPHQSQKDASQRF*QPHLEQEMVSPFRA
Trigger: CGCTCGAAATGGGGAGACCATTTCCTGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGCATCCTTCTGTGACTGGTGTGGAGCCATGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 90 bp GTGAGGACTGGCCTGTGGTCACTCATCTTCTCCTGCCTCTGCCTGTaGGAAGCCGCCTCCAGTTCCTTCTTTGCCAGGAGCTTGCCAGAT +
Preference number: 5 (lower is better)
Translates to: VRTGLWSLIFSCLCL*EAASSSFFARSLPD
Trigger: ATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAGGCGGCTTCTCACAGGCAGAGGCAGGAGAAGATGAGTGACCACAGGCCAGTCCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp CTTCTCCTGCCTCTGCCTGTGAGAAGCCGCCTCCAGTTCCTTCTTTaGCAGGAGCTTGCCAGATGGGTAGAACAGGCCAGAGGTCTGAGT +
Preference number: 5 (lower is better)
Translates to: LLLPLPVRSRLQFLL*QELARWVEQARGLS
Trigger: ACTCAGACCTCTGGCCTGTTCTACCCATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAGGCGGCTTCTCACAGGCAGAGGCAGGAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp GTGGAGCAAGAGGAGCTTCGCACACCACACAGATGGGGGTGTTCATaGGAACCATACTGCCACATTCTGCACACAGGCCCATCTGAGCCC +
Preference number: 5 (lower is better)
Translates to: VEQEELRTPHRWGCS*EPYCHILHTGPSEP
Trigger: GGGCTCAGATGGGCCTGTGTGCAGAATGTGGCAGTATGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCGAAGCTCCTCTTGCTCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081982.12
CDS CCA 90 bp GTGGCCGAAGCTGTGGAGCAAGAGGAGCTTCGCACACCACACAGATaGGGGTGTTCATGGGAACCATACTGCCACATTCTGCACACAGGC +
Preference number: 5 (lower is better)
Translates to: VAEAVEQEELRTPHR*GCSWEPYCHILHTG
Trigger: GCCTGTGTGCAGAATGTGGCAGTATGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCGAAGCTCCTCTTGCTCCACAGCTTCGGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CAGTGCCACAGGTGCGACAGATTACCCTCTCCTTTAAGTAGAGGCTaGCCTGTGGCCGAAGCTGTGGAGCAAGAGGAGCTTCGCACACCA +
Preference number: 5 (lower is better)
Translates to: QCHRCDRLPSPLSRG*PVAEAVEQEELRTP
Trigger: TGGTGTGCGAAGCTCCTCTTGCTCCACAGCTTCGGCCACAGGCCAGCCTCTACTTAAAGGAGAGGGTAATCTGTCGCACCTGTGGCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp GCCACATTCTGCACACAGGCCCATCTGCTGAGCCCCTTCTGGGGGTaGAAGACGATAGCCAAATATGGGTGGGACAGGAGCTCCACATTC +
Preference number: 5 (lower is better)
Translates to: ATFCTQAHLLSPFWG*KTIAKYGWDRSSTF
Trigger: GAATGTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGCAGATGGGCCTGTGTGCAGAATGTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS CCA 90 bp CATACTGCCACATTCTGCACACAGGCCCATCTGCTGAGCCCCTTCTaGGGGTGGAAGACGATAGCCAAATATGGGTGGGACAGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: HTATFCTQAHLLSPF*GWKTIAKYGWDRSS
Trigger: GGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGCAGATGGGCCTGTGTGCAGAATGTGGCAGTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCGCACAGCCACTGCTCTaGTGTTGGAGGCAGGGGTCC +
Preference number: 5 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTAQPLL*CWRQGS
Trigger: GGACCCCTGCCTCCAACACAAGAGCAGTGGCTGTGC...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 90 bp TGTGTTGGAGGCAGGGGTCCCTCACAGGTGACACAGTATCTCAGATaGGCAGGATTCCCAGTGCCACAGGTGCGACAGATTACCCTCTCC +
Preference number: 5 (lower is better)
Translates to: CVGGRGPSQVTQYLR*AGFPVPQVRQITLS
Trigger: GGAGAGGGTAATCTGTCGCACCTGTGGCACTGGGAATCCTGCTCATCTGAGATACTGTGTCACCTGTGAGGGACCCCTGCCTCCAACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 90 bp CCACACCTGGAGCAGGAAATGGTCTCCCCATTTCGAGCGGGCGGATaGGGGACTTCATCTCCATTGCACAGCCACTGCTCTTGTGTTGGA +
Preference number: 5 (lower is better)
Translates to: PHLEQEMVSPFRAGG*GTSSPLHSHCSCVG
Trigger: TCCAACACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCCTCATCCGCCCGCTCGAAATGGGGAGACCATTTCCTGCTCCAGGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp GCTAGCAGAAATGCCAAGCATGGCTCCACACCAGTCACAGAAGGATaGCTCCCAGAGGTTCTGGCAGCCACACCTGGAGCAGGAAATGGT +
Preference number: 5 (lower is better)
Translates to: ASRNAKHGSTPVTEG*LPEVLAATPGAGNG
Trigger: ACCATTTCCTGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGCATCCTTCTGTGACTGGTGTGGAGCCATGCTTGGCATTTCTGCTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp GGCCTGGTGAGTAGGCAGTCGAGCACTCGCTCCCTCATGGTAGGCTaGGATTTCCAGTGGACTCTCTGCGAAGCGAAGATCTTTCAGAGT +
Preference number: 5 (lower is better)
Translates to: GLVSRQSSTRSLMVG*DFQWTLCEAKIFQS
Trigger: ACTCTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAAATCCCAGCCTACCATGAGGGAGCGAGTGCTCGACTGCCTACTCACCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CGGGAAGCCAGACAGTGGGCACACTTGAGGAAGTCTGTCTCCCTCTaGATCCTCATGATCTCGGTGCTCGTCAGACTCTTCTGGCCAGTT +
Preference number: 5 (lower is better)
Translates to: REARQWAHLRKSVSL*ILMISVLVRLFWPV
Trigger: AACTGGCCAGAAGAGTCTGACGAGCACCGAGATCATGAGGATCCAGAGGGAGACAGACTTCCTCAAGTGTGCCCACTGTCTGGCTTCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp GGCCCATCTGAGCCCCTTCTGGGGGTGGAAGACGATAGCCAAATATaGGTGGGACAGGAGCTCCACATTCGTGACAGAAGCGAGCAAATG +
Preference number: 5 (lower is better)
Translates to: GPSEPLLGVEDDSQI*VGQELHIRDRSEQM
Trigger: CATTTGCTCGCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGATGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081982.12
CDS CCA 90 bp GGAGCCACAGAAGCGGGCAGTCAGATGATTGCTGGCCCCACATTTTaGGCAGACAGAGTGGCTAGCAGAAATGCCAAGCATGGCTCCACA +
Preference number: 5 (lower is better)
Translates to: GATEAGSQMIAGPTF*ADRVASRNAKHGST
Trigger: TGTGGAGCCATGCTTGGCATTTCTGCTAGCCACTCTGTCTGCCCAAAATGTGGGGCCAGCAATCATCTGACTGCCCGCTTCTGTGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp GTGGAGCAAGAGGAGCTTCGCACACCACACAGATGGGGGTGTTCATaGGAACCATACTGCCACATTCTGCACACAGGCCCATCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: VEQEELRTPHRWGCS*EPYCHILHTGPSAE
Trigger: CTCAGCAGATGGGCCTGTGTGCAGAATGTGGCAGTATGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCGAAGCTCCTCTTGCTCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS CCA 90 bp CGGATGAGGGACTTCATCTCCATTGCACAGCCACTGCTCTTGTGTTaGAGGCAGGGGTCCCTCACAGGTGACACAGTATCTCAGATGAGC +
Preference number: 5 (lower is better)
Translates to: RMRDFISIAQPLLLC*RQGSLTGDTVSQMS
Trigger: GCTCATCTGAGATACTGTGTCACCTGTGAGGGACCCCTGCCTCCAACACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCCTCATCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CCTAGGATGCGGTTCCCAGGTGGAGAAAGTTGGTCCTCCAGACCTTaGGTGAACTTAGCGGCAAAGAGAGAAGAGGTGAGGTCATCTCCC +
Preference number: 5 (lower is better)
Translates to: PRMRFPGGESWSSRP*VNLAAKREEVRSSP
Trigger: GGGAGATGACCTCACCTCTTCTCTCTTTGCCGCTAAGTTCACCCAAGGTCTGGAGGACCAACTTTCTCCACCTGGGAACCGCATCCTAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CTGCTGAGCCCCTTCTGGGGGTGGAAGACGATAGCCAAATATGGGTaGGACAGGAGCTCCACATTCGTGACAGAAGCGAGCAAATGGATC +
Preference number: 5 (lower is better)
Translates to: LLSPFWGWKTIAKYG*DRSSTFVTEASKWI
Trigger: GATCCATTTGCTCGCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS CCA 90 bp CCATCTGCTGAGCCCCTTCTGGGGGTGGAAGACGATAGCCAAATATaGGTGGGACAGGAGCTCCACATTCGTGACAGAAGCGAGCAAATG +
Preference number: 5 (lower is better)
Translates to: PSAEPLLGVEDDSQI*VGQELHIRDRSEQM
Trigger: CATTTGCTCGCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGCAGATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS CCA 90 bp AGGCAGTCGAGCACTCGCTCCCTCATGGTAGGCTGGGATTTCCAGTaGACTCTCTGCGAAGCGAAGATCTTTCAGAGTTTTAGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: RQSSTRSLMVGWDFQ*TLCEAKIFQSFRVC
Trigger: GCAGACCCTAAAACTCTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAAATCCCAGCCTACCATGAGGGAGCGAGTGCTCGACTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp TATGGGTGGGACAGGAGCTCCACATTCGTGACAGAAGCGAGCAAATaGATCAGATGGACGGGAAGCCAGACAGTGGGCACACTTGAGGAA +
Preference number: 5 (lower is better)
Translates to: YGWDRSSTFVTEASK*IRWTGSQTVGTLEE
Trigger: TTCCTCAAGTGTGCCCACTGTCTGGCTTCCCGTCCATCTGATCCATTTGCTCGCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CATCTGAGCCCCTTCTGGGGGTGGAAGACGATAGCCAAATATGGGTaGGACAGGAGCTCCACATTCGTGACAGAAGCGAGCAAATGGATC +
Preference number: 5 (lower is better)
Translates to: HLSPFWGWKTIAKYG*DRSSTFVTEASKWI
Trigger: GATCCATTTGCTCGCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081982.12
CDS GCA 90 bp AGCACTCGCTCCCTCATGGTAGGCTGGGATTTCCAGTGGACTCTCTaGGAAGCGAAGATCTTTCAGAGTTTTAGGGTCTGCTCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: STRSLMVGWDFQWTL*EAKIFQSFRVCSFA
Trigger: GGCGAAAGAGCAGACCCTAAAACTCTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAAATCCCAGCCTACCATGAGGGAGCGAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TGTGACCAACTGTGTCACCCATTACACAGAGAGGCAGGCAAGGTGGCAGTTACCCCAGGCCAAGTAGAGTaGCTTCGTGAAGAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: CDQLCHPLHREAGKVAVTPGQVE*LREELC
Trigger: ACACAGCTCTTCACGAAGCAACTCTACTTGGCCTGG...GGTAACTGCCACCTTGCCTGCCTCTCTGTGTAATGGGTGACACAGTTGGTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CGGTCCCCACTGCTGGTCGATGTCTGCTCCTCTCTGAGCGAGGACTaGAATGGCTTCATAGTGTTTATTCACAACAGCCACAATAACAGC +
Preference number: 5 (lower is better)
Translates to: RSPLLVDVCSSLSED*NGFIVFIHNSHNNS
Trigger: GCTGTTATTGTGGCTGTTGTGAATAAACACTATGAAGCCATTCCAGTCCTCGCTCAGAGAGGAGCAGACATCGACCAGCAGTGGGGACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 90 bp TTTGGCCTTGAGATTCTTCATCTTCTTGATACTTTCGGGGGTGTCTaGGACGCTCTGGCTATAGGCACTCACCAAGCTGGACCTGCTGTC +
Preference number: 5 (lower is better)
Translates to: FGLEILHLLDTFGGV*DALAIGTHQAGPAV
Trigger: GACAGCAGGTCCAGCTTGGTGAGTGCCTATAGCCAGAGCGTCTCAGACACCCCCGAAAGTATCAAGAAGATGAAGAATCTCAAGGCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp GTGAAGAGCTGTGTTTCTGAACGGTCCCCACTGCTGGTCGATGTCTaGTCCTCTCTGAGCGAGGACTGGAATGGCTTCATAGTGTTTATT +
Preference number: 5 (lower is better)
Translates to: VKSCVSERSPLLVDV*SSLSEDWNGFIVFI
Trigger: AATAAACACTATGAAGCCATTCCAGTCCTCGCTCAGAGAGGAGCAGACATCGACCAGCAGTGGGGACCGTTCAGAAACACAGCTCTTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp GTGGCACATGCCTTTAATGCCAGCATTTGGGAGGCAGAGACAGCCTGTGTGTTTGTTAGCTTTTCCAGGTaGAGGCACTCGCAGTGGTAT +
Preference number: 5 (lower is better)
Translates to: VAHAFNASIWEAETACVFVSFSR*RHSQWY
Trigger: ATACCACTGCGAGTGCCTCAACCTGGAAAAGCTAAC...AAACACACAGGCTGTCTCTGCCTCCCAAATGCTGGCATTAAAGGCATGTGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCTCCTCCAGCAGGAGTTaGTTTTCAGGTGTGAGCGGC +
Preference number: 5 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPSSSRS*FSGVSG
Trigger: GCCGCTCACACCTGAAAACAAACTCCTGCTGGAGGA...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp GTGGCACATGCCTTTAATGCCAGCATTTGGGAGGCAGAGACAGCCTGTGTGTTTATGCTGTCTGGCCTCTaGTGTTCTTCTTTTGGGCGT +
Preference number: 5 (lower is better)
Translates to: VAHAFNASIWEAETACVFMLSGL*CSSFGR
Trigger: ACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCAT...AAACACACAGGCTGTCTCTGCCTCCCAAATGCTGGCATTAAAGGCATGTGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp CAGTGGACTCTCTGCGAAGCGAAGATCTTTCAGAGTTTTAGGGTCTaGTCTTTCGCCTACCTTGAGGTCTGCAAGCCGTCTAAGGTTAAC +
Preference number: 5 (lower is better)
Translates to: QWTLCEAKIFQSFRV*SFAYLEVCKPSKVN
Trigger: GTTAACCTTAGACGGCTTGCAGACCTCAAGGTAGGCGAAAGAGCAGACCCTAAAACTCTGAAAGATCTTCGCTTCGCAGAGAGTCCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp CACAATAACAGCAGGTCGACCTTGACTATCACAGCAGTTAGGGTCTaGTCCTTCATCCAGCAGCTGTTCCAGCACAGACAGTCTTCCTTT +
Preference number: 5 (lower is better)
Translates to: HNNSRSTLTITAVRV*SFIQQLFQHRQSSF
Trigger: AAAGGAAGACTGTCTGTGCTGGAACAGCTGCTGGATGAAGGAGCAGACCCTAACTGCTGTGATAGTCAAGGTCGACCTGCTGTTATTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp TGTTCTTCTTTTGGGCGTTTGCATTGCATCCCAGTAAAGTGGCGATaGTCTCCCTTCCTTCCAGGCCAAGTAGAGTTGCTTCGTGAAGAG +
Preference number: 5 (lower is better)
Translates to: CSSFGRLHCIPVKWR*SPFLPGQVELLREE
Trigger: CTCTTCACGAAGCAACTCTACTTGGCCTGGAAGGAAGGGAGAGCATCGCCACTTTACTGGGATGCAATGCAAACGCCCAAAAGAAGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 90 bp GAGAGAAGAGGTGAGGTCATCTCCCATCTCCAGAGCGATGTCATATaGTGTCTGGCCTCTTGTGTTCTTCTTTTGGGCGTTTGCATTGCA +
Preference number: 5 (lower is better)
Translates to: ERRGEVISHLQSDVI*CLASCVLLLGVCIA
Trigger: TGCAATGCAAACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCATATGACATCGCTCTGGAGATGGGAGATGACCTCACCTCTTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TATGCTATAGGGGGAGTTCAAGGCCAGCTTGAGCAACTTTATGAGATCTTATTTGCACAGCCACTGCTCTaGTGTTGGAGGCAGGGGTCC +
Preference number: 5 (lower is better)
Translates to: YAIGGVQGQLEQLYEILFAQPLL*CWRQGS
Trigger: GGACCCCTGCCTCCAACACAAGAGCAGTGGCTGTGC...AAATAAGATCTCATAAAGTTGCTCAAGCTGGCCTTGAACTCCCCCTATAGCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCGGGACTTCATCTCCATaGCACAGCCACTGCTCTTGT +
Preference number: 5 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPGTSSP*HSHCSC
Trigger: ACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCC...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp ACAGGTTCATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGTCCTCCAGCAGGAGTTaGTTTTCAGGTGTGAGCGGC +
Preference number: 5 (lower is better)
Translates to: TGSSHSGSWEETFQIHCLSSSRS*FSGVSG
Trigger: GCCGCTCACACCTGAAAACAAACTCCTGCTGGAGGA...CAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CTGTCATATAGCCCGTTCCCACCTTCGGTGACACTGCTCAGAAAGTaGTCACTGAGATTCACCGACTTGTTGAAGTACAGGCTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: LSYSPFPPSVTLLRK*SLRFTDLLKYRLLF
Trigger: AAACAAGAGCCTGTACTTCAACAAGTCGGTGAATCTCAGTGACCACTTTCTGAGCAGTGTCACCGAAGGTGGGAACGGGCTATATGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp GCCAACTTCCTCCAGCAGGAGTTTGTTTTCAGGTGTGAGCGGCTCTaGGTTCACAAGGAAGCTTTTGGCCTTGAGATTCTTCATCTTCTT +
Preference number: 5 (lower is better)
Translates to: ANFLQQEFVFRCERL*VHKEAFGLEILHLL
Trigger: AAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCTTGTGAACCCAGAGCCGCTCACACCTGAAAACAAACTCCTGCTGGAGGAAGTTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGCCAGGCCAAGTAGAGTaGCTTCGTGAAGAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLPGQVE*LREELC
Trigger: ACACAGCTCTTCACGAAGCAACTCTACTTGGCCTGG...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TCTGGAAAAAGTAGCTCTGAGGACTGTGGGATCATAACTACTATTGGGCCACTGGTTAGCTTTTCCAGGTaGAGGCACTCGCAGTGGTAT +
Preference number: 5 (lower is better)
Translates to: SGKSSSEDCGIITTIGPLVSFSR*RHSQWY
Trigger: ATACCACTGCGAGTGCCTCAACCTGGAAAAGCTAAC...CAGTGGCCCAATAGTAGTTATGATCCCACAGTCCTCAGAGCTACTTTTTCCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp ATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGCTCTCTGCCCACCTGAAACACCTTaGTCACAATTCCACTCTGTC +
Preference number: 5 (lower is better)
Translates to: IPFWILGRDFSDTLSALCPPETP*SQFHSV
Trigger: GACAGAGTGGAATTGTGACAAAGGTGTTTCAGGTGG...GCAGAGAGCAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp GGGAAATACACAGAACATATAACCAGGCAGAGTATTTGGGGTTCACATTGGTCAAGACAGTGGGCACACTaGAGGAAGTCTGTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: GKYTEHITRQSIWGSHWSRQWAH*RKSVSL
Trigger: GAGGGAGACAGACTTCCTCAAGTGTGCCCACTGTCT...TGACCAATGTGAACCCCAAATACTCTGCCTGGTTATATGTTCTGTGTATTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TATGCTATAGGGGGAGTTCAAGGCCAGCTTGAGCAACTTTATGAGATCTTATTTAGACAGTGGGCACACTaGAGGAAGTCTGTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: YAIGGVQGQLEQLYEILFRQWAH*RKSVSL
Trigger: GAGGGAGACAGACTTCCTCAAGTGTGCCCACTGTCT...AAATAAGATCTCATAAAGTTGCTCAAGCTGGCCTTGAACTCCCCCTATAGCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCTCTTGTGTTCTTCTTTaGGGCGTTTGCATTGCATCC +
Preference number: 5 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPSCVLL*GVCIAS
Trigger: GGATGCAATGCAAACGCCCAAAAGAAGAACACAAGA...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCAGAGCATCTTCAACATaGTCTTCAGAAGAGACCATC +
Preference number: 5 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPRASST*SSEETI
Trigger: GATGGTCTCTTCTGAAGACAATGTTGAAGATGCTCT...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TATGCTATAGGGGGAGTTCAAGGCCAGCTTGAGCAACTTTATGAGATCTTATTTGGGACTTCATCTCCATaGCACAGCCACTGCTCTTGT +
Preference number: 5 (lower is better)
Translates to: YAIGGVQGQLEQLYEILFGTSSP*HSHCSC
Trigger: ACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCC...AAATAAGATCTCATAAAGTTGCTCAAGCTGGCCTTGAACTCCCCCTATAGCATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp AGATCTGAATGCCCATCTCAACTATACACATGTCTAGGAGGCAAAACCTGCCCCAGGAAGCTTTTGGCCTaGAGATTCTTCATCTTCTTG +
Preference number: 5 (lower is better)
Translates to: RSECPSQLYTCLGGKTCPRKLLA*RFFIFL
Trigger: CAAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCT...GGGGCAGGTTTTGCCTCCTAGACATGTGTATAGTTGAGATGGGCATTCAGATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 90 bp CTTGAGAGCATCTTCAACATTGTCTTCAGAAGAGACCATCTTCGGTaGTTCATAGTCCACCTGAAACACCTTTGTCACAATTCCACTCTG +
Preference number: 5 (lower is better)
Translates to: LESIFNIVFRRDHLR*FIVHLKHLCHNSTL
Trigger: CAGAGTGGAATTGTGACAAAGGTGTTTCAGGTGGACTATGAACCACCGAAGATGGTCTCTTCTGAAGACAATGTTGAAGATGCTCTCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp ACAGGTTCATCCCATTCTGGATCCTGGGAAGAGACTTTTCAGATACACTGTCTGAGATTCTTCATCTTCTaGATACTTTCGGGGGTGTCT +
Preference number: 5 (lower is better)
Translates to: TGSSHSGSWEETFQIHCLRFFIF*ILSGVS
Trigger: AGACACCCCCGAAAGTATCAAGAAGATGAAGAATCT...CAGACAGTGTATCTGAAAAGTCTCTTCCCAGGATCCAGAATGGGATGAACCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATATCTTGTGTTCTTCTTTaGGGCGTTTGCATTGCATCC +
Preference number: 5 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYISCVLL*GVCIAS
Trigger: GGATGCAATGCAAACGCCCAAAAGAAGAACACAAGA...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp GACTTGAAGATAGAAAGATCCAGACCGGGCCAAAATGGTAACAGATTAAAAACATTGGTCCTCCAGACCTaGGGTGAACTTAGCGGCAAA +
Preference number: 5 (lower is better)
Translates to: DLKIERSRPGQNGNRLKTLVLQT*GELSGK
Trigger: TTTGCCGCTAAGTTCACCCAAGGTCTGGAGGACCAA...TGTTTTTAATCTGTTACCATTTTGGCCCGGTCTGGATCTTTCTATCTTCAAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp ACGGTCACAGAGCCTCTCTCTACTCAACTGCACTTAACATTTTTGGCCTACATAAGATTCTTCATCTTCTaGATACTTTCGGGGGTGTCT +
Preference number: 5 (lower is better)
Translates to: TVTEPLSTQLHLTFLAYIRFFIF*ILSGVS
Trigger: AGACACCCCCGAAAGTATCAAGAAGATGAAGAATCT...TATGTAGGCCAAAAATGTTAAGTGCAGTTGAGTAGAGAGAGGCTCTGTGACCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp AGACAATGTACCTGCTGGAGAATACGATTTTTGTCTCAACCTTACAAATTCAACTTGGTCCTCCAGACCTaGGGTGAACTTAGCGGCAAA +
Preference number: 5 (lower is better)
Translates to: RQCTCWRIRFLSQPYKFNLVLQT*GELSGK
Trigger: TTTGCCGCTAAGTTCACCCAAGGTCTGGAGGACCAA...GTTGAATTTGTAAGGTTGAGACAAAAATCGTATTCTCCAGCAGGTACATTGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 90 bp GTGGTCACTGAGATTCACCGACTTGTTGAAGTACAGGCTCTTGTTTaGGACTTGAATATAGTTCAGTCTGATGCTAACTTCATAGCCATC +
Preference number: 5 (lower is better)
Translates to: VVTEIHRLVEVQALV*DLNIVQSDANFIAI
Trigger: GATGGCTATGAAGTTAGCATCAGACTGAACTATATTCAAGTCTCAAACAAGAGCCTGTACTTCAACAAGTCGGTGAATCTCAGTGACCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATATGCTGTCTGGCCTCTaGTGTTCTTCTTTTGGGCGT +
Preference number: 5 (lower is better)
Translates to: CICVGIVPWFSREIHRTYMLSGL*CSSFGR
Trigger: ACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCAT...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TGTATCTGTGTGGGAATAGTTCCATGGTTTTCAAGGGAAATACACAGAACATATCCACCTGAAACACCTTaGTCACAATTCCACTCTGTC +
Preference number: 5 (lower is better)
Translates to: CICVGIVPWFSREIHRTYPPETP*SQFHSV
Trigger: GACAGAGTGGAATTGTGACAAAGGTGTTTCAGGTGG...ATATGTTCTGTGTATTTCCCTTGAAAACCATGGAACTATTCCCACACAGATACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS-3UTR CAA 90 bp TGGCTCAACACTTTGGGTAACCTGAACTTAATTCAAACCTATAGACTGCATCTGAGGAAGCTTTTGGCCTaGAGATTCTTCATCTTCTTG +
Preference number: 5 (lower is better)
Translates to: WLNTLGNLNLIQTYRLHLRKLLA*RFFIFL
Trigger: CAAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCT...CAGATGCAGTCTATAGGTTTGAATTAAGTTCAGGTTACCCAAAGTGTTGAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp CCACTGGCAGATGTGGGCAAAGGGACGTTTAGGGACTaGCAGGCAGATCGGGGCTCAGGAAATGGGCGAGGC +
Preference number: 6 (lower is better)
Translates to: PLADVGKGTFRD*QADRGSGNGRG
Trigger: GCCTCGCCCATTTCCTGAGCCCCGATCTGCCTGGCAGTCCCTAAACGTCCCTTTGCCCACATCTGCCAGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp CCAGTAGCCTCTTCCCGGGCTGACGGCTGTGAGGACTaGCCTGTGGTCACTCATCTTCTCCTGCCTCTGCCT +
Preference number: 6 (lower is better)
Translates to: PVASSRADGCED*PVVTHLLLPLP
Trigger: AGGCAGAGGCAGGAGAAGATGAGTGACCACAGGCCAGTCCTCACAGCCGTCAGCCCGGGAAGAGGCTACTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp CCCAGAGGTTCTGGCAGCCACACCTGGAGCAGGAAATaGTCTCCCCATTTCGAGCGGGCGGATGAGGGACTT +
Preference number: 6 (lower is better)
Translates to: PRGSGSHTWSRK*SPHFERADEGL
Trigger: AAGTCCCTCATCCGCCCGCTCGAAATGGGGAGACCATTTCCTGCTCCAGGTGTGGCTGCCAGAACCTCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp CTCGGTGCTCGTCAGACTCTTCTGGCCAGTTATGTGTaGAAAGCCAGGGGACTGGGCCTGGTGAGTAGGCAG +
Preference number: 6 (lower is better)
Translates to: LGARQTLLASYV*KARGLGLVSRQ
Trigger: CTGCCTACTCACCAGGCCCAGTCCCCTGGCTTTGCACACATAACTGGCCAGAAGAGTCTGACGAGCACCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp TGCACACAGGCCCATCTGCTGAGCCCCTTCTGGGGGTaGAAGACGATAGCCAAATATGGGTGGGACAGGAGC +
Preference number: 6 (lower is better)
Translates to: CTQAHLLSPFWG*KTIAKYGWDRS
Trigger: GCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGCAGATGGGCCTGTGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS CAA 72 bp GCCTCTGCCTGTGAGAAGCCGCCTCCAGTTCCTTCTTaGCCAGGAGCTTGCCAGATGGGTAGAACAGGCCAG +
Preference number: 6 (lower is better)
Translates to: ASACEKPPPVPS*PGACQMGRTGQ
Trigger: CTGGCCTGTTCTACCCATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAGGCGGCTTCTCACAGGCAGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 90 bp AGCGGGCGGATGAGGGACTTCATCTCCATTGCACAGCCACTGCTCTaGTGTTGGAGGCAGGGGTCCCTCACAGGTGACACAGTATCTCAG +
Preference number: 6 (lower is better)
Translates to: SGRMRDFISIAQPLL*CWRQGSLTGDTVSQ
Trigger: CTGAGATACTGTGTCACCTGTGAGGGACCCCTGCCTCCAACACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCCTCATCCGCCCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 90 bp TCTTCTCCTGCCTCTGCCTGTGAGAAGCCGCCTCCAGTTCCTTCTTaGCCAGGAGCTTGCCAGATGGGTAGAACAGGCCAGAGGTCTGAG +
Preference number: 6 (lower is better)
Translates to: SSPASACEKPPPVPS*PGACQMGRTGQRSE
Trigger: CTCAGACCTCTGGCCTGTTCTACCCATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAGGCGGCTTCTCACAGGCAGAGGCAGGAGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp CATTTCGAGCGGGCGGATGAGGGACTTCATCTCCATTaGACAGCCACTGCTCTTGTGTTGGAGGCAGGGGTC +
Preference number: 6 (lower is better)
Translates to: HFERADEGLHLH*TATALVLEAGV
Trigger: GACCCCTGCCTCCAACACAAGAGCAGTGGCTGTGCAATGGAGATGAAGTCCCTCATCCGCCCGCTCGAAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp AATGCCAAGCATGGCTCCACACCAGTCACAGAAGGATaGCTCCCAGAGGTTCTGGCAGCCACACCTGGAGCA +
Preference number: 6 (lower is better)
Translates to: NAKHGSTPVTEG*LPEVLAATPGA
Trigger: TGCTCCAGGTGTGGCTGCCAGAACCTCTGGGAGGCATCCTTCTGTGACTGGTGTGGAGCCATGCTTGGCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp CCTCTGCCTGTGAGAAGCCGCCTCCAGTTCCTTCTTTaGCAGGAGCTTGCCAGATGGGTAGAACAGGCCAGA +
Preference number: 6 (lower is better)
Translates to: PLPVRSRLQFLL*QELARWVEQAR
Trigger: TCTGGCCTGTTCTACCCATCTGGCAAGCTCCTGGCAAAGAAGGAACTGGAGGCGGCTTCTCACAGGCAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 72 bp GGCAGGGGTCCCTCACAGGTGACACAGTATCTCAGATaGGCAGGATTCCCAGTGCCACAGGTGCGACAGATT +
Preference number: 6 (lower is better)
Translates to: GRGPSQVTQYLR*AGFPVPQVRQI
Trigger: AATCTGTCGCACCTGTGGCACTGGGAATCCTGCTCATCTGAGATACTGTGTCACCTGTGAGGGACCCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 72 bp GAGCAGGAAATGGTCTCCCCATTTCGAGCGGGCGGATaGGGGACTTCATCTCCATTGCACAGCCACTGCTCT +
Preference number: 6 (lower is better)
Translates to: EQEMVSPFRAGG*GTSSPLHSHCS
Trigger: AGAGCAGTGGCTGTGCAATGGAGATGAAGTCCCTCATCCGCCCGCTCGAAATGGGGAGACCATTTCCTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp ACACCACACAGATGGGGGTGTTCATGGGAACCATACTaGCACATTCTGCACACAGGCCCATCTGCTGAGCCC +
Preference number: 6 (lower is better)
Translates to: TPHRWGCSWEPY*HILHTGPSAEP
Trigger: GGGCTCAGCAGATGGGCCTGTGTGCAGAATGTGGCAGTATGGTTCCCATGAACACCCCCATCTGTGTGGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS CCA 72 bp TGGATCCTCATGATCTCGGTGCTCGTCAGACTCTTCTaGCCAGTTATGTGTGCAAAGCCAGGGGACTGGGCC +
Preference number: 6 (lower is better)
Translates to: WILMISVLVRLF*PVMCAKPGDWA
Trigger: GGCCCAGTCCCCTGGCTTTGCACACATAACTGGCCAGAAGAGTCTGACGAGCACCGAGATCATGAGGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp CCCTTCTGGGGGTGGAAGACGATAGCCAAATATGGGTaGGACAGGAGCTCCACATTCGTGACAGAAGCGAGC +
Preference number: 6 (lower is better)
Translates to: PFWGWKTIAKYG*DRSSTFVTEAS
Trigger: GCTCGCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp GAGCCCCTTCTGGGGGTGGAAGACGATAGCCAAATATaGGTGGGACAGGAGCTCCACATTCGTGACAGAAGC +
Preference number: 6 (lower is better)
Translates to: EPLLGVEDDSQI*VGQELHIRDRS
Trigger: GCTTCTGTCACGAATGTGGAGCTCCTGTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp GAGGAGCTTCGCACACCACACAGATGGGGGTGTTCATaGGAACCATACTGCCACATTCTGCACACAGGCCCA +
Preference number: 6 (lower is better)
Translates to: EELRTPHRWGCS*EPYCHILHTGP
Trigger: TGGGCCTGTGTGCAGAATGTGGCAGTATGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCGAAGCTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp TGTCTGAGACGCTCTGGCTATAGGCACTCACCAAGCTaGACCTGCTGTCATATAGCCCGTTCCCACCTTCGG +
Preference number: 6 (lower is better)
Translates to: CLRRSGYRHSPS*TCCHIARSHLR
Trigger: CCGAAGGTGGGAACGGGCTATATGACAGCAGGTCCAGCTTGGTGAGTGCCTATAGCCAGAGCGTCTCAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp ACATTCTGCACACAGGCCCATCTGCTGAGCCCCTTCTaGGGGTGGAAGACGATAGCCAAATATGGGTGGGAC +
Preference number: 6 (lower is better)
Translates to: TFCTQAHLLSPF*GWKTIAKYGWD
Trigger: GTCCCACCCATATTTGGCTATCGTCTTCCACCCCCAGAAGGGGCTCAGCAGATGGGCCTGTGTGCAGAATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163701.2
CDS TCA 72 bp ACTGCTCTTGTGTTGGAGGCAGGGGTCCCTCACAGGTaGCACAGTATCTCAGATGAGCAGGATTCCCAGTGC +
Preference number: 6 (lower is better)
Translates to: TALVLEAGVPHR*HSISDEQDSQC
Trigger: GCACTGGGAATCCTGCTCATCTGAGATACTGTGTCACCTGTGAGGGACCCCTGCCTCCAACACAAGAGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 72 bp CTCTCCCTTCCTTCCAGGCCAAGTAGAGTTGCTTCGTaGAGAGCTGTGTTTCTGAACGGTCCCCACTGCTGG +
Preference number: 6 (lower is better)
Translates to: LSLPSRPSRVAS*RAVFLNGPHCW
Trigger: CCAGCAGTGGGGACCGTTCAGAAACACAGCTCTTCACGAAGCAACTCTACTTGGCCTGGAAGGAAGGGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp GACAGTGGCAGAGATAAGCTTCCCCATCCTGGGCTCTaGAATCAAGGCCCGGAATTCAGGGTTGTTCTGAGC +
Preference number: 6 (lower is better)
Translates to: DSGRDKLPHPGL*NQGPEFRVVLS
Trigger: GCTCAGAACAACCCTGAATTCCGGGCCTTGATTGCAGAGCCCAGGATGGGGAAGCTTATCTCTGCCACTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp CGAGCAAATGGATCAGATGGACGGGAAGCCAGACAGTaGGCACACTTGAGGAAGTCTGTCTCCCTCTGGATC +
Preference number: 6 (lower is better)
Translates to: RANGSDGREARQ*AHLRKSVSLWI
Trigger: GATCCAGAGGGAGACAGACTTCCTCAAGTGTGCCCACTGTCTGGCTTCCCGTCCATCTGATCCATTTGCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp GACAGGAGCTCCACATTCGTGACAGAAGCGAGCAAATaGATCAGATGGACGGGAAGCCAGACAGTGGGCACA +
Preference number: 6 (lower is better)
Translates to: DRSSTFVTEASK*IRWTGSQTVGT
Trigger: TGTGCCCACTGTCTGGCTTCCCGTCCATCTGATCCATTTGCTCGCTTCTGTCACGAATGTGGAGCTCCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp GCTGTGGAGCAAGAGGAGCTTCGCACACCACACAGATaGGGGTGTTCATGGGAACCATACTGCCACATTCTG +
Preference number: 6 (lower is better)
Translates to: AVEQEELRTPHR*GCSWEPYCHIL
Trigger: CAGAATGTGGCAGTATGGTTCCCATGAACACCCCCATCTGTGTGGTGTGCGAAGCTCCTCTTGCTCCACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp AGGTGCGACAGATTACCCTCTCCTTTAAGTAGAGGCTaGCCTGTGGCCGAAGCTGTGGAGCAAGAGGAGCTT +
Preference number: 6 (lower is better)
Translates to: RCDRLPSPLSRG*PVAEAVEQEEL
Trigger: AAGCTCCTCTTGCTCCACAGCTTCGGCCACAGGCCAGCCTCTACTTAAAGGAGAGGGTAATCTGTCGCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp CGGTTCCCAGGTGGAGAAAGTTGGTCCTCCAGACCTTaGGTGAACTTAGCGGCAAAGAGAGAAGAGGTGAGG +
Preference number: 6 (lower is better)
Translates to: RFPGGESWSSRP*VNLAAKREEVR
Trigger: CCTCACCTCTTCTCTCTTTGCCGCTAAGTTCACCCAAGGTCTGGAGGACCAACTTTCTCCACCTGGGAACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp CTGTCACCTAGGATGCGGTTCCCAGGTGGAGAAAGTTaGTCCTCCAGACCTTGGGTGAACTTAGCGGCAAAG +
Preference number: 6 (lower is better)
Translates to: LSPRMRFPGGES*SSRPWVNLAAK
Trigger: CTTTGCCGCTAAGTTCACCCAAGGTCTGGAGGACCAACTTTCTCCACCTGGGAACCGCATCCTAGGTGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp GCGGTTCCCAGGTGGAGAAAGTTGGTCCTCCAGACCTaGGGTGAACTTAGCGGCAAAGAGAGAAGAGGTGAG +
Preference number: 6 (lower is better)
Translates to: AVPRWRKLVLQT*GELSGKERRGE
Trigger: CTCACCTCTTCTCTCTTTGCCGCTAAGTTCACCCAAGGTCTGGAGGACCAACTTTCTCCACCTGGGAACCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp AGCAGGTCGACCTTGACTATCACAGCAGTTAGGGTCTaGTCCTTCATCCAGCAGCTGTTCCAGCACAGACAG +
Preference number: 6 (lower is better)
Translates to: SRSTLTITAVRV*SFIQQLFQHRQ
Trigger: CTGTCTGTGCTGGAACAGCTGCTGGATGAAGGAGCAGACCCTAACTGCTGTGATAGTCAAGGTCGACCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp TGTGTTTCTGAACGGTCCCCACTGCTGGTCGATGTCTaGTCCTCTCTGAGCGAGGACTGGAATGGCTTCATA +
Preference number: 6 (lower is better)
Translates to: CVSERSPLLVDV*SSLSEDWNGFI
Trigger: TATGAAGCCATTCCAGTCCTCGCTCAGAGAGGAGCAGACATCGACCAGCAGTGGGGACCGTTCAGAAACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp AGACAGTGGGCACACTTGAGGAAGTCTGTCTCCCTCTaGATCCTCATGATCTCGGTGCTCGTCAGACTCTTC +
Preference number: 6 (lower is better)
Translates to: RQWAHLRKSVSL*ILMISVLVRLF
Trigger: GAAGAGTCTGACGAGCACCGAGATCATGAGGATCCAGAGGGAGACAGACTTCCTCAAGTGTGCCCACTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp GAAGCGGGCAGTCAGATGATTGCTGGCCCCACATTTTaGGCAGACAGAGTGGCTAGCAGAAATGCCAAGCAT +
Preference number: 6 (lower is better)
Translates to: EAGSQMIAGPTF*ADRVASRNAKH
Trigger: ATGCTTGGCATTTCTGCTAGCCACTCTGTCTGCCCAAAATGTGGGGCCAGCAATCATCTGACTGCCCGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp AGCCCGTTCCCACCTTCGGTGACACTGCTCAGAAAGTaGTCACTGAGATTCACCGACTTGTTGAAGTACAGG +
Preference number: 6 (lower is better)
Translates to: SPFPPSVTLLRK*SLRFTDLLKYR
Trigger: CCTGTACTTCAACAAGTCGGTGAATCTCAGTGACCACTTTCTGAGCAGTGTCACCGAAGGTGGGAACGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 90 bp GACAGTCTTCCTTTCCCTGAGGAGCCAACTTCCTCCAGCAGGAGTTaGTTTTCAGGTGTGAGCGGCTCTGGGTTCACAAGGAAGCTTTTG +
Preference number: 6 (lower is better)
Translates to: DSLPFPEEPTSSSRS*FSGVSGSGFTRKLL
Trigger: CAAAAGCTTCCTTGTGAACCCAGAGCCGCTCACACCTGAAAACAAACTCCTGCTGGAGGAAGTTGGCTCCTCAGGGAAAGGAAGACTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp CTCTGCGAAGCGAAGATCTTTCAGAGTTTTAGGGTCTaGTCTTTCGCCTACCTTGAGGTCTGCAAGCCGTCT +
Preference number: 6 (lower is better)
Translates to: LCEAKIFQSFRV*SFAYLEVCKPS
Trigger: AGACGGCTTGCAGACCTCAAGGTAGGCGAAAGAGCAGACCCTAAAACTCTGAAAGATCTTCGCTTCGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp TCCCTCATGGTAGGCTGGGATTTCCAGTGGACTCTCTaGGAAGCGAAGATCTTTCAGAGTTTTAGGGTCTGC +
Preference number: 6 (lower is better)
Translates to: SLMVGWDFQWTL*EAKIFQSFRVC
Trigger: GCAGACCCTAAAACTCTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAAATCCCAGCCTACCATGAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp TTTGGGCGTTTGCATTGCATCCCAGTAAAGTGGCGATaGTCTCCCTTCCTTCCAGGCCAAGTAGAGTTGCTT +
Preference number: 6 (lower is better)
Translates to: FGRLHCIPVKWR*SPFLPGQVELL
Trigger: AAGCAACTCTACTTGGCCTGGAAGGAAGGGAGAGCATCGCCACTTTACTGGGATGCAATGCAAACGCCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS GCA 72 bp GGTGAGGTCATCTCCCATCTCCAGAGCGATGTCATATaGTGTCTGGCCTCTTGTGTTCTTCTTTTGGGCGTT +
Preference number: 6 (lower is better)
Translates to: GEVISHLQSDVI*CLASCVLLLGV
Trigger: AACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCATATGACATCGCTCTGGAGATGGGAGATGACCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp AGCACTCGCTCCCTCATGGTAGGCTGGGATTTCCAGTaGACTCTCTGCGAAGCGAAGATCTTTCAGAGTTTT +
Preference number: 6 (lower is better)
Translates to: STRSLMVGWDFQ*TLCEAKIFQSF
Trigger: AAAACTCTGAAAGATCTTCGCTTCGCAGAGAGTCCACTGGAAATCCCAGCCTACCATGAGGGAGCGAGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp CTGCTGGTCGATGTCTGCTCCTCTCTGAGCGAGGACTaGAATGGCTTCATAGTGTTTATTCACAACAGCCAC +
Preference number: 6 (lower is better)
Translates to: LLVDVCSSLSED*NGFIVFIHNSH
Trigger: GTGGCTGTTGTGAATAAACACTATGAAGCCATTCCAGTCCTCGCTCAGAGAGGAGCAGACATCGACCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp ATGCTGTCTGGCCTCTTGTGTTCTTCTTTTGGGCGTTaGCATTGCATCCCAGTAAAGTGGCGATGCTCTCCC +
Preference number: 6 (lower is better)
Translates to: MLSGLLCSSFGR*HCIPVKWRCSP
Trigger: GGGAGAGCATCGCCACTTTACTGGGATGCAATGCAAACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp GTGAGCGGCTCTGGGTTCACAAGGAAGCTTTTGGCCTaGAGATTCTTCATCTTCTTGATACTTTCGGGGGTG +
Preference number: 6 (lower is better)
Translates to: VSGSGFTRKLLA*RFFIFLILSGV
Trigger: CACCCCCGAAAGTATCAAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCTTGTGAACCCAGAGCCGCTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp CCATCTCCAGAGCGATGTCATATGCTGTCTGGCCTCTaGTGTTCTTCTTTTGGGCGTTTGCATTGCATCCCA +
Preference number: 6 (lower is better)
Translates to: PSPERCHMLSGL*CSSFGRLHCIP
Trigger: TGGGATGCAATGCAAACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCATATGACATCGCTCTGGAGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 90 bp AGTTTGTTTTCAGGTGTGAGCGGCTCTGGGTTCACAAGGAAGCTTTaGGCCTTGAGATTCTTCATCTTCTTGATACTTTCGGGGGTGTCT +
Preference number: 6 (lower is better)
Translates to: SLFSGVSGSGFTRKL*ALRFFIFLILSGVS
Trigger: AGACACCCCCGAAAGTATCAAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCTTGTGAACCCAGAGCCGCTCACACCTGAAAACAAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 90 bp TTCATAGTGTTTATTCACAACAGCCACAATAACAGCAGGTCGACCTaGACTATCACAGCAGTTAGGGTCTGCTCCTTCATCCAGCAGCTG +
Preference number: 6 (lower is better)
Translates to: FIVFIHNSHNNSRST*TITAVRVCSFIQQL
Trigger: CAGCTGCTGGATGAAGGAGCAGACCCTAACTGCTGTGATAGTCAAGGTCGACCTGCTGTTATTGTGGCTGTTGTGAATAAACACTATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 72 bp TTATTCACAACAGCCACAATAACAGCAGGTCGACCTTaGCTATCACAGCAGTTAGGGTCTGCTCCTTCATCC +
Preference number: 6 (lower is better)
Translates to: LFTTATITAGRP*LSQQLGSAPSS
Trigger: GGATGAAGGAGCAGACCCTAACTGCTGTGATAGTCAAGGTCGACCTGCTGTTATTGTGGCTGTTGTGAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp ATGTCATATGCTGTCTGGCCTCTTGTGTTCTTCTTTTaGGCGTTTGCATTGCATCCCAGTAAAGTGGCGATG +
Preference number: 6 (lower is better)
Translates to: MSYAVWPLVFFF*AFALHPSKVAM
Trigger: CATCGCCACTTTACTGGGATGCAATGCAAACGCCCAAAAGAAGAACACAAGAGGCCAGACAGCATATGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp TCTTTCAGAGTTTTAGGGTCTGCTCTTTCGCCTACCTaGAGGTCTGCAAGCCGTCTAAGGTTAACGTTCCAA +
Preference number: 6 (lower is better)
Translates to: SFRVLGSALSPT*RSASRLRLTFQ
Trigger: TTGGAACGTTAACCTTAGACGGCTTGCAGACCTCAAGGTAGGCGAAAGAGCAGACCCTAAAACTCTGAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp ACAAGGAAGCTTTTGGCCTTGAGATTCTTCATCTTCTaGATACTTTCGGGGGTGTCTGAGACGCTCTGGCTA +
Preference number: 6 (lower is better)
Translates to: TRKLLALRFFIF*ILSGVSETLWL
Trigger: TAGCCAGAGCGTCTCAGACACCCCCGAAAGTATCAAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp TCAGGTGTGAGCGGCTCTGGGTTCACAAGGAAGCTTTaGGCCTTGAGATTCTTCATCTTCTTGATACTTTCG +
Preference number: 6 (lower is better)
Translates to: SGVSGSGFTRKL*ALRFFIFLILS
Trigger: CGAAAGTATCAAGAAGATGAAGAATCTCAAGGCCAAAAGCTTCCTTGTGAACCCAGAGCCGCTCACACCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp AGTATTGGTATCAATTTCATGGTTAGCTTTTCCAGGTaGAGGCACTCGCAGTGGTATGATCTGAGGGGCACA +
Preference number: 6 (lower is better)
Translates to: SIGINFMVSFSR*RHSQWYDLRGT
Trigger: TGTGCCCCTCAGATCATACCACTGCGAGTGCCTCAACCTGGAAAAGCTAACCATGAAATTGATACCAATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 72 bp TTTATTCACAACAGCCACAATAACAGCAGGTCGACCTaGACTATCACAGCAGTTAGGGTCTGCTCCTTCATC +
Preference number: 6 (lower is better)
Translates to: FIHNSHNNSRST*TITAVRVCSFI
Trigger: GATGAAGGAGCAGACCCTAACTGCTGTGATAGTCAAGGTCGACCTGCTGTTATTGTGGCTGTTGTGAATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CAA 90 bp AAGCGAAGATCTTTCAGAGTTTTAGGGTCTGCTCTTTCGCCTACCTaGAGGTCTGCAAGCCGTCTAAGGTTAACGTTCCAAGTTGATTTA +
Preference number: 6 (lower is better)
Translates to: KRRSFRVLGSALSPT*RSASRLRLTFQVDL
Trigger: TAAATCAACTTGGAACGTTAACCTTAGACGGCTTGCAGACCTCAAGGTAGGCGAAAGAGCAGACCCTAAAACTCTGAAAGATCTTCGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 72 bp AGTCAGGTTTGCTGCCATCCAGGGTGTAATATATGTTaGCATCTGGGGTGTCGGATTTCATTTCCAAAAGAG +
Preference number: 6 (lower is better)
Translates to: SQVCCHPGCNIC*HLGCRISFPKE
Trigger: CTCTTTTGGAAATGAAATCCGACACCCCAGATGTCAACATATATTACACCCTGGATGGCAGCAAACCTGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp TTTGCTGCCATCCAGGGTGTAATATATGTTGACATCTaGGGTGTCGGATTTCATTTCCAAAAGAGTATTGGT +
Preference number: 6 (lower is better)
Translates to: FAAIQGVIYVDI*GVGFHFQKSIG
Trigger: ACCAATACTCTTTTGGAAATGAAATCCGACACCCCAGATGTCAACATATATTACACCCTGGATGGCAGCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS CCA 72 bp ATCTTCAACATTGTCTTCAGAAGAGACCATCTTCGGTaGTTCATAGTCCACCTGAAACACCTTTGTCACAAT +
Preference number: 6 (lower is better)
Translates to: IFNIVFRRDHLR*FIVHLKHLCHN
Trigger: ATTGTGACAAAGGTGTTTCAGGTGGACTATGAACCACCGAAGATGGTCTCTTCTGAAGACAATGTTGAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2
CDS TCA 72 bp GAGATTCACCGACTTGTTGAAGTACAGGCTCTTGTTTaGGACTTGAATATAGTTCAGTCTGATGCTAACTTC +
Preference number: 6 (lower is better)
Translates to: EIHRLVEVQALV*DLNIVQSDANF
Trigger: GAAGTTAGCATCAGACTGAACTATATTCAAGTCTCAAACAAGAGCCTGTACTTCAACAAGTCGGTGAATCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081982.12
ENSMUST00000163701.2