Pregenerated sensors for DYNLT4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047671Ensembl transcript IDs: ENSMUST00000062206.3, ENSMUST00000134074.8, ENSMUST00000144269.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGTGAAGGTGGCAGAGGCCAGTCCATCGTGCACCGCATCCCAGAGTaGTCGGCTGACCACATGCACACCCTGTCCCTCGCGTGGCCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: GEGGRGQSIVHRIPE*SADHMHTLSLAWPQ Trigger: CTGGGGCCACGCGAGGGACAGGGTGTGCATGTGGTCAGCCGAGCACTCTGGGATGCGGTGCACGATGGACTGGCCTCTGCCACCTTCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062206.3 |
||
| CDS GCA 90 bp | CTCAGAACCGCAGTAGCACACACCGTTCAGCTGTGTGGTCAGTGCTaGCTCCAGGGCCCGCTGGGCACCTGCAGCTTCCCAGTGTTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LRTAVAHTVQLCGQC*LQGPLGTCSFPVFP Trigger: GGGGAACACTGGGAAGCTGCAGGTGCCCAGCGGGCCCTGGAGGCAGCACTGACCACACAGCTGAACGGTGTGTGCTACTGCGGTTCTGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062206.3 ENSMUST00000144269.2 |
||
| CDS GCA 90 bp | TGCCTCAGAACCGCAGTAGCACACACCGTTCAGCTGTGTGGTCAGTaGTGCCTCCAGGGCCCGCTGGGCACCTGCAGCTTCCCAGTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: CLRTAVAHTVQLCGQ*CLQGPLGTCSFPVF Trigger: GAACACTGGGAAGCTGCAGGTGCCCAGCGGGCCCTGGAGGCAGCACTGACCACACAGCTGAACGGTGTGTGCTACTGCGGTTCTGAGGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062206.3 ENSMUST00000144269.2 |
||
| CDS GCA 90 bp | GCAAACAGAGAAGGGTTGGTGAAGGTGGCAGAGGCCAGTCCATCGTaGACCGCATCCCAGAGTGCTCGGCTGACCACATGCACACCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: ANREGLVKVAEASPS*TASQSARLTTCTPC Trigger: ACAGGGTGTGCATGTGGTCAGCCGAGCACTCTGGGATGCGGTGCACGATGGACTGGCCTCTGCCACCTTCACCAACCCTTCTCTGTTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062206.3 |
||
| CDS TCA 90 bp | GTGGCCCCAGCACCACGTTGCACACGAGTTTGTAGCGGGGTAGGTTaGGCTCCCTCACGCGGGTGTGTATCTGTTCACATAGTGCCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: VAPAPRCTRVCSGVG*APSRGCVSVHIVPA Trigger: TGCAGGCACTATGTGAACAGATACACACCCGCGTGAGGGAGCTCAACCTACCCCGCTACAAACTCGTGTGCAACGTGGTGCTGGGGCCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062206.3 ENSMUST00000144269.2 |
||
| CDS TCA 90 bp | GCTGGGCCTGGGCCTATAGGTCGGGTCTCATCAATGCTGGGCAGGTaGCCTCCAGGTTTCCCTGGTGGTAATTTCAGAGCCAGGTCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: AGPGPIGRVSSMLGR*PPGFPGGNFRARSL Trigger: CAAAGACCTGGCTCTGAAATTACCACCAGGGAAACCTGGAGGTCACCTGCCCAGCATTGATGAGACCCGACCTATAGGCCCAGGCCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062206.3 ENSMUST00000134074.8 ENSMUST00000144269.2 |
||
| CDS GCA 72 bp | GGCAGAGGCCAGTCCATCGTGCACCGCATCCCAGAGTaGTCGGCTGACCACATGCACACCCTGTCCCTCGCG | + |
|
Preference number: 6 (lower is better) Translates to: GRGQSIVHRIPE*SADHMHTLSLA Trigger: CGCGAGGGACAGGGTGTGCATGTGGTCAGCCGAGCACTCTGGGATGCGGTGCACGATGGACTGGCCTCTGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062206.3 |
||
| CDS CCA 72 bp | TGCTCGGCTGACCACATGCACACCCTGTCCCTCGCGTaGCCCCAGCACCACGTTGCACACGAGTTTGTAGCG | + |
|
Preference number: 6 (lower is better) Translates to: CSADHMHTLSLA*PQHHVAHEFVA Trigger: CGCTACAAACTCGTGTGCAACGTGGTGCTGGGGCCACGCGAGGGACAGGGTGTGCATGTGGTCAGCCGAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062206.3 |
||
| CDS GCA 72 bp | GAAGGGTTGGTGAAGGTGGCAGAGGCCAGTCCATCGTaGACCGCATCCCAGAGTGCTCGGCTGACCACATGC | + |
|
Preference number: 6 (lower is better) Translates to: EGLVKVAEASPS*TASQSARLTTC Trigger: GCATGTGGTCAGCCGAGCACTCTGGGATGCGGTGCACGATGGACTGGCCTCTGCCACCTTCACCAACCCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062206.3 |
||
| CDS TCA 72 bp | GGGCCTATAGGTCGGGTCTCATCAATGCTGGGCAGGTaGCCTCCAGGTTTCCCTGGTGGTAATTTCAGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: GPIGRVSSMLGR*PPGFPGGNFRA Trigger: GGCTCTGAAATTACCACCAGGGAAACCTGGAGGTCACCTGCCCAGCATTGATGAGACCCGACCTATAGGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062206.3 ENSMUST00000134074.8 ENSMUST00000144269.2 |
||