Pregenerated sensors for DYNLT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031176Ensembl transcript IDs: ENSMUST00000033519.3
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTGGTTTTTCCAACTGAATAACTGCCAAAACCAACCTGCCAGGTaGACGCCATGTGAATGCCACGTGAACACCACGTTAAGAGCTGTC | + |
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Preference number: 1 (lower is better) Translates to: HWFFQLNNCQNQPAR*TPCECHVNTTLRAV Trigger: GACAGCTCTTAACGTGGTGTTCACGTGGCATTCACATGGCGTTCACCTGGCAGGTTGGTTTTGGCAGTTATTCAGTTGGAAAAACCAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR GCA 90 bp | TCTGGACGTGCCAAAGCTACAGGTCACCTCATTAAACCCCATCTTTaGATTCTTGTCATTAGAGTTATTCTGCAAAATGTCAACCATGCA | + |
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Preference number: 1 (lower is better) Translates to: SGRAKATGHLIKPHL*ILVIRVILQNVNHA Trigger: TGCATGGTTGACATTTTGCAGAATAACTCTAATGACAAGAATGCAAAGATGGGGTTTAATGAGGTGACCTGTAGCTTTGGCACGTCCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR CCA 90 bp | AAATCAATGGATTTGCCAGTTCTCAGGAAAAGAAAACTAGTTAGATaGGGCGGGTGTATGTGTGTCAAATTACTCTCTATGAACTACTAT | + |
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Preference number: 1 (lower is better) Translates to: KSMDLPVLRKRKLVR*GGCMCVKLLSMNYY Trigger: ATAGTAGTTCATAGAGAGTAATTTGACACACATACACCCGCCCCATCTAACTAGTTTTCTTTTCCTGAGAACTGGCAAATCCATTGATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR GCA 90 bp | GACGTGCCAAAGCTACAGGTCACCTCATTAAACCCCATCTTTGCATTCTTGTCAACGTTAAGAGCTGTCTaGCTGGAGAGAAACATGCAG | + |
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Preference number: 2 (lower is better) Translates to: DVPKLQVTSLNPIFAFLSTLRAV*LERNMQ Trigger: CTGCATGTTTCTCTCCAGGCAGACAGCTCTTAACGT...TGACAAGAATGCAAAGATGGGGTTTAATGAGGTGACCTGTAGCTTTGGCACGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR TCA 90 bp | TGGTCCTCATATGAGGATCCTGTCTTAATGTTGTTGCCATTACTACTAAACGTTAACCAACCTGCCAGGTaGACGCCATGTGAATGCCAC | + |
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Preference number: 2 (lower is better) Translates to: WSSYEDPVLMLLPLLLNVNQPAR*TPCECH Trigger: GTGGCATTCACATGGCGTTCACCTGGCAGGTTGGTT...AACGTTTAGTAGTAATGGCAACAACATTAAGACAGGATCCTCATATGAGGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR CAA 90 bp | GTGCCAAAGCTACAGGTCACCTCATTAAACCCCATCTTTGCATTCTaGTCATTAGAGTTATTCTGCAAAATGTCAACCATGCACATGGTC | + |
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Preference number: 2 (lower is better) Translates to: VPKLQVTSLNPIFAF*SLELFCKMSTMHMV Trigger: GACCATGTGCATGGTTGACATTTTGCAGAATAACTCTAATGACAAGAATGCAAAGATGGGGTTTAATGAGGTGACCTGTAGCTTTGGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR CCA 90 bp | ACAGGTCACCTCATTAAACCCCATCTTTGCATTCTTGTCATTAGAGTTATTCTGTTAGCGCTCTCCTTCTaGTTAATTTTCCACGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: TGHLIKPHLCILVIRVILLALSF*LIFHGG Trigger: TCCTCCGTGGAAAATTAACCAGAAGGAGAGCGCTAA...CAGAATAACTCTAATGACAAGAATGCAAAGATGGGGTTTAATGAGGTGACCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR TCA 90 bp | TGCACATGGTCCTCATATGAGGATCCTGTCTTAATGTTGTTGCCATTACTACTAGGCAATGGTAAGATGTaGAATCGAGTTCATTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: CTWSSYEDPVLMLLPLLLGNGKM*NRVHFE Trigger: TTCAAAATGAACTCGATTTCACATCTTACCATTGCC...TAGTAGTAATGGCAACAACATTAAGACAGGATCCTCATATGAGGACCATGTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR GCA 90 bp | TGGTCCTCATATGAGGATCCTGTCTTAATGTTGTTGCCATTACTACTAAACGTTAGTGTTTACATGGATTaGGTGGCAATGGTAAGATGT | + |
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Preference number: 2 (lower is better) Translates to: WSSYEDPVLMLLPLLLNVSVYMD*VAMVRC Trigger: ACATCTTACCATTGCCACGCAATCCATGTAAACACT...AACGTTTAGTAGTAATGGCAACAACATTAAGACAGGATCCTCATATGAGGACCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR TCA 90 bp | AATGTTGTTGCCATTACTACTAAACGTTTCCTTCCCCTAAAACTTCAATGGCACAAATCGAGTTCATTTTaGAGGTTAAATGGCAGACTG | + |
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Preference number: 2 (lower is better) Translates to: NVVAITTKRFLPLKLQWHKSSSF*RLNGRL Trigger: CAGTCTGCCATTTAACCTTCAAAATGAACTCGATTT...GTGCCATTGAAGTTTTAGGGGAAGGAAACGTTTAGTAGTAATGGCAACAACATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR GCA 72 bp | TGTGAATGCCACGTGAACACCACGTTAAGAGCTGTCTaGCTGGAGAGAAACATGCAGAGCACACATCCGATA | + |
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Preference number: 3 (lower is better) Translates to: CECHVNTTLRAV*LERNMQSTHPI Trigger: TATCGGATGTGTGCTCTGCATGTTTCTCTCCAGGCAGACAGCTCTTAACGTGGTGTTCACGTGGCATTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR TCA 72 bp | TTCCAACTGAATAACTGCCAAAACCAACCTGCCAGGTaGACGCCATGTGAATGCCACGTGAACACCACGTTA | + |
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Preference number: 3 (lower is better) Translates to: FQLNNCQNQPAR*TPCECHVNTTL Trigger: TAACGTGGTGTTCACGTGGCATTCACATGGCGTTCACCTGGCAGGTTGGTTTTGGCAGTTATTCAGTTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR TCA 72 bp | TATTCTCCCTCAAACATAAACACTGGTTTTTCCAACTaGATAACTGCCAAAACCAACCTGCCAGGTGAACGC | + |
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Preference number: 3 (lower is better) Translates to: YSPSNINTGFSN*ITAKTNLPGER Trigger: GCGTTCACCTGGCAGGTTGGTTTTGGCAGTTATTCAGTTGGAAAAACCAGTGTTTATGTTTGAGGGAGAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR GCA 72 bp | ACTTCAATGGCACGTGATTCCAGTGTTTACATGGATTaGGTGGCAATGGTAAGATGTGAAATCGAGTTCATT | + |
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Preference number: 3 (lower is better) Translates to: TSMARDSSVYMD*VAMVRCEIEFI Trigger: AATGAACTCGATTTCACATCTTACCATTGCCACGCAATCCATGTAAACACTGGAATCACGTGCCATTGAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR CCA 72 bp | GATTTGCCAGTTCTCAGGAAAAGAAAACTAGTTAGATaGGGCGGGTGTATGTGTGTCAAATTACTCTCTATG | + |
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Preference number: 3 (lower is better) Translates to: DLPVLRKRKLVR*GGCMCVKLLSM Trigger: CATAGAGAGTAATTTGACACACATACACCCGCCCCATCTAACTAGTTTTCTTTTCCTGAGAACTGGCAAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR CAA 90 bp | TATTCTGCAAAATGTCAACCATGCACATGGTCCTCATATGAGGATCCTGTCTTATGGATTGTAAGGCAGTaGTCTGAGTCATATACTGTT | + |
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Preference number: 3 (lower is better) Translates to: YSAKCQPCTWSSYEDPVLWIVRQ*SESYTV Trigger: AACAGTATATGACTCAGACAACTGCCTTACAATCCA...TAAGACAGGATCCTCATATGAGGACCATGTGCATGGTTGACATTTTGCAGAATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR-3UTR CAA 90 bp | AGTAACATAAAGGTAATGACAAAGAACTCTGGACGTGCCAAAGCTACAGGTCACCCTGTCTTAATGTTGTaGCCATTACTACTAAACGTT | + |
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Preference number: 3 (lower is better) Translates to: SNIKVMTKNSGRAKATGHPVLML*PLLLNV Trigger: AACGTTTAGTAGTAATGGCAACAACATTAAGACAGG...GTGACCTGTAGCTTTGGCACGTCCAGAGTTCTTTGTCATTACCTTTATGTTACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR GCA 72 bp | GCCAAAGCTACAGGTCACCTCATTAAACCCCATCTTTaGATTCTTGTCATTAGAGTTATTCTGCAAAATGTC | + |
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Preference number: 3 (lower is better) Translates to: AKATGHLIKPHL*ILVIRVILQNV Trigger: GACATTTTGCAGAATAACTCTAATGACAAGAATGCAAAGATGGGGTTTAATGAGGTGACCTGTAGCTTTGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR TCA 90 bp | GACGTGCCAAAGCTACAGGTCACCTCATTAAACCCCATCTTTGCATTCTTGTCAGGGCTTCATCAGCATTaGAGCCAACCTCATCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: DVPKLQVTSLNPIFAFLSGLHQH*SQPHRR Trigger: CCTGCGATGAGGTTGGCTTCAATGCTGATGAAGCCC...TGACAAGAATGCAAAGATGGGGTTTAATGAGGTGACCTGTAGCTTTGGCACGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR TCA 90 bp | CTCAAACATAAACACTGGTTTTTCCAACTGAATAACTGCCAAAACCAACCTGCCCAGGAGCTGGCTGTGTaGAATCCATACGGGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LKHKHWFFQLNNCQNQPAQELAV*NPYGLL Trigger: GAGGAGCCCGTATGGATTTCACACAGCCAGCTCCTG...GGCAGGTTGGTTTTGGCAGTTATTCAGTTGGAAAAACCAGTGTTTATGTTTGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR GCA 90 bp | AGTAACATAAAGGTAATGACAAAGAACTCTGGACGTGCCAAAGCTACAGGTCACGCTCCTCTGGACCACTaGACAGGTCACAATGTACTT | + |
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Preference number: 4 (lower is better) Translates to: SNIKVMTKNSGRAKATGHAPLDH*TGHNVL Trigger: AAGTACATTGTGACCTGTGCAGTGGTCCAGAGGAGC...GTGACCTGTAGCTTTGGCACGTCCAGAGTTCTTTGTCATTACCTTTATGTTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR TCA 90 bp | ATTCTGTCACCAATTAGCGCTCTCCTTCTGGTTAATTTTCCACGGAGGACCAGACATCAACACACTCTTTaGCTATATTATGGGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: ILSPISALLLVNFPRRTRHQHTL*LYYGLH Trigger: ATGAAGCCCATAATATAGTCAAAGAGTGTGTTGATG...TCTGGTCCTCCGTGGAAAATTAACCAGAAGGAGAGCGCTAATTGGTGACAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR CCA 90 bp | GACGTGCCAAAGCTACAGGTCACCTCATTAAACCCCATCTTTGCATTCTTGTCATCTTTGACTATATTATaGGCTTCATCAGCATTGAAG | + |
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Preference number: 4 (lower is better) Translates to: DVPKLQVTSLNPIFAFLSSLTIL*ASSALK Trigger: CTTCAATGCTGATGAAGCCCATAATATAGTCAAAGA...TGACAAGAATGCAAAGATGGGGTTTAATGAGGTGACCTGTAGCTTTGGCACGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR GCA 90 bp | AATGTTGTTGCCATTACTACTAAACGTTTCCTTCCCCTAAAACTTCAATGGCACCAAAAACATTCACGATaGAGTTCATGGTACGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: NVVAITTKRFLPLKLQWHQKHSR*SSWYGS Trigger: AGAACCGTACCATGAACTGCATCGTGAATGTTTTTG...GTGCCATTGAAGTTTTAGGGGAAGGAAACGTTTAGTAGTAATGGCAACAACATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| 3UTR CAA 72 bp | AACAATCAAAGAGTAAGCCTTAAATGCACAGATAATTaGGTCACTGTTACAATCTCCCAAGGTACAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: NNQRVSLKCTDN*VTVTISQGTRA Trigger: GGCTCTTGTACCTTGGGAGATTGTAACAGTGACCAAATTATCTGTGCATTTAAGGCTTACTCTTTGATTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR CCA 90 bp | AATGTTGTTGCCATTACTACTAAACGTTTCCTTCCCCTAAAACTTCAATGGCACATGCTTGCAGTCCATTaGTTGATGTTATTCTCATTA | + |
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Preference number: 4 (lower is better) Translates to: NVVAITTKRFLPLKLQWHMLAVH*LMLFSL Trigger: TAATGAGAATAACATCAACCAATGGACTGCAAGCAT...GTGCCATTGAAGTTTTAGGGGAAGGAAACGTTTAGTAGTAATGGCAACAACATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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| CDS-3UTR CAA 90 bp | TGCACATGGTCCTCATATGAGGATCCTGTCTTAATGTTGTTGCCATTACTACTATATGCTTGCAGTCCATaGGTTGATGTTATTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: CTWSSYEDPVLMLLPLLLYACSP*VDVILI Trigger: AATGAGAATAACATCAACCAATGGACTGCAAGCATA...TAGTAGTAATGGCAACAACATTAAGACAGGATCCTCATATGAGGACCATGTGCA 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033519.3 |
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