Pregenerated sensors for DYNLT2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014075Ensembl transcript IDs: ENSMUST00000014220.15, ENSMUST00000080316.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACCACACAGTAGTTGTCCGTGTCTaGATCCCAGAAACAGCGAGC | + |
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Preference number: 4 (lower is better) Translates to: VTLPNDSIVETPKCCHHTVVVRV*IPETAS Trigger: GCTCGCTGTTTCTGGGATGCAGACACGGACAACTAC...TGTGTGGTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR TCA 90 bp | GTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACCACACATTGCCAATTCTTCCTTaGGCACAGTATGGATGCAGT | + |
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Preference number: 4 (lower is better) Translates to: VTLPNDSIVETPKCCHHTLPILP*AQYGCS Trigger: ACTGCATCCATACTGTGCTCAAGGAAGAATTGGCAA...TGTGTGGTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR CCA 90 bp | CTTGAAGTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACACCTTTGCTGGAAAATaGGCCTCAGAATGTAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: LEVTLPNDSIVETPKCCHTFAGK*ASECRC Trigger: ACACCTACATTCTGAGGCCCATTTTCCAGCAAAGGT...GTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGACTTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR CCA 90 bp | CTTGAAGTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACGGTCTAAACCTTTGCTaGAAAATGGGCCTCAGAATG | + |
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Preference number: 4 (lower is better) Translates to: LEVTLPNDSIVETPKCCHGLNLC*KMGLRM Trigger: CATTCTGAGGCCCATTTTCCAGCAAAGGTTTAGACC...GTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGACTTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR TCA 90 bp | CTTGAAGTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACCTGATAGACGTTTTGTaGGTTGAGGCATTTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: LEVTLPNDSIVETPKCCHLIDVL*VEAFHL Trigger: CAGATGAAATGCCTCAACTCACAAAACGTCTATCAG...GTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGACTTCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR CCA 90 bp | CTTGAAGTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACTCCTTGAGCACAGTATaGATGCAGTCTTTAACCACA | + |
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Preference number: 4 (lower is better) Translates to: LEVTLPNDSIVETPKCCHSLSTV*MQSLTT Trigger: TGTGGTTAAAGACTGCATCCATACTGTGCTCAAGGA...GTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGACTTCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR CCA 90 bp | CTTGAAGTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACTTGAGGCATTTCATCTaGAGAATATTCAGCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: LEVTLPNDSIVETPKCCHLRHFI*RIFSTC Trigger: GCAAGTGCTGAATATTCTCCAGATGAAATGCCTCAA...GTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGACTTCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR CAA 90 bp | GTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACCACACAAGAGGGTCTAAACCTTaGCTGGAAAATGGGCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: VTLPNDSIVETPKCCHHTRGSKP*LENGPQ Trigger: CTGAGGCCCATTTTCCAGCAAAGGTTTAGACCCTCT...TGTGTGGTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS-3UTR CAA 90 bp | CTTGAAGTCACACTTCCCAACGATTCAATAGTAGAAACACCCAAATGCTGCCACCTTGCCAATTCTTCCTaGAGCACAGTATGGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: LEVTLPNDSIVETPKCCHLANSS*STVWMQ Trigger: CTGCATCCATACTGTGCTCAAGGAAGAATTGGCAAG...GTGGCAGCATTTGGGTGTTTCTACTATTGAATCGTTGGGAAGTGTGACTTCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080316.8 |
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| CDS TCA 72 bp | AATGGGCCTCAGAATGTAGGTGTTCTCAGGCTCCCCTaGGTTCTTGTCGACCTCACTCAAGCCCTCGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: NGPQNVGVLRLP*VLVDLTQALGV Trigger: CACTCCGAGGGCTTGAGTGAGGTCGACAAGAACTCAGGGGAGCCTGAGAACACCTACATTCTGAGGCCCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000014220.15 ENSMUST00000080316.8 |
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| CDS TCA 72 bp | CAAATGCTGCCACCACACAGAATAAGCTGTCGTTCATaGAAACATCGTGAGTGTAGTTGTCCGTGTCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: QMLPPHRISCRS*KHRECSCPCLH Trigger: ATGCAGACACGGACAACTACACTCACGATGTTTTCATGAACGACAGCTTATTCTGTGTGGTGGCAGCATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014220.15 |
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| CDS CAA 72 bp | TCATCTGGAGAATATTCAGCACTTGCCAATTCTTCCTaGAGCACAGTATGGATGCAGTCTTTAACCACAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSGEYSALANSS*STVWMQSLTTE Trigger: CTCTGTGGTTAAAGACTGCATCCATACTGTGCTCAAGGAAGAATTGGCAAGTGCTGAATATTCTCCAGATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000014220.15 ENSMUST00000080316.8 |
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