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Pregenerated sensors for DYNLT2A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000116780

Ensembl transcript IDs: ENSMUST00000097399.6, ENSMUST00000231584.2, ENSMUST00000232173.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GAGCTATTCACAATAGAGAGCAAACACCAAGGCCAATACCACGTAAGACTCTGTCCCAGATCCATCTGCTaGCAATTTAGCATCTGGAAG +
Preference number: 4 (lower is better)
Translates to: ELFTIESKHQGQYHVRLCPRSIC*QFSIWK
Trigger: CTTCCAGATGCTAAATTGCCAGCAGATGGATCTGGG...ACAGAGTCTTACGTGGTATTGGCCTTGGTGTTTGCTCTCTATTGTGAATAGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS-3UTR GCA 90 bp TTCACAATAGAGAGCAAACACCAAGGCCAATACCACGTAAGACTCTGTTTCATGCATCCCAGATCCATCTaGTGGCAATTTAGCATCTGG +
Preference number: 4 (lower is better)
Translates to: FTIESKHQGQYHVRLCFMHPRSI*WQFSIW
Trigger: CCAGATGCTAAATTGCCAGCAGATGGATCTGGGATG...CATGAAACAGAGTCTTACGTGGTATTGGCCTTGGTGTTTGCTCTCTATTGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS-3UTR CCA 90 bp TTCACAATAGAGAGCAAACACCAAGGCCAATACCACGTAAGACTCTGTTTCATGTGGCAATTTAGCATCTaGAAGAATGTCCACCTTGAT +
Preference number: 4 (lower is better)
Translates to: FTIESKHQGQYHVRLCFMWQFSI*KNVHLD
Trigger: ATCAAGGTGGACATTCTTCCAGATGCTAAATTGCCA...CATGAAACAGAGTCTTACGTGGTATTGGCCTTGGTGTTTGCTCTCTATTGTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS CCA 90 bp TGTCCCATGCCACATCCCAGATCCATCTGCTGGCAATTTAGCATCTaGAAGAATGTCCACCTTGATTCCTTGACCTTTAATATCTGCTGG +
Preference number: 5 (lower is better)
Translates to: CPMPHPRSICWQFSI*KNVHLDSLTFNICW
Trigger: CCAGCAGATATTAAAGGTCAAGGAATCAAGGTGGACATTCTTCCAGATGCTAAATTGCCAGCAGATGGATCTGGGATGTGGCATGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS-3UTR CAA 90 bp GCTATTCACAATAGAGAGCAAACACCAAGGCCAATACCACGTAAGACTCTGTTTTTAGCTTCTACCCAGTaGTCCCATGCCACATCCCAG +
Preference number: 5 (lower is better)
Translates to: AIHNREQTPRPIPRKTLFLASTQ*SHATSQ
Trigger: CTGGGATGTGGCATGGGACAACTGGGTAGAAGCTAA...AAACAGAGTCTTACGTGGTATTGGCCTTGGTGTTTGCTCTCTATTGTGAATAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS-3UTR CAA 90 bp ATTCACAATAGAGAGCAAACACCAAGGCCAATACCACGTAAGACTCTGTTTCATTGCCTACATCAGCAATaGAGTCATCAAACGGAGGTT +
Preference number: 5 (lower is better)
Translates to: IHNREQTPRPIPRKTLFHCLHQQ*SHQTEV
Trigger: AACCTCCGTTTGATGACTCAATTGCTGATGTAGGCA...ATGAAACAGAGTCTTACGTGGTATTGGCCTTGGTGTTTGCTCTCTATTGTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS-3UTR CAA 90 bp TTCACAATAGAGAGCAAACACCAAGGCCAATACCACGTAAGACTCTGTTTCATGTTCTACCAAATGTGCTaGAAATTTCTTCAGTGGCTC +
Preference number: 5 (lower is better)
Translates to: FTIESKHQGQYHVRLCFMFYQMC*KFLQWL
Trigger: GAGCCACTGAAGAAATTTCAAGCACATTTGGTAGAA...CATGAAACAGAGTCTTACGTGGTATTGGCCTTGGTGTTTGCTCTCTATTGTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS TCA 90 bp TCTTTGACTGCTGCCAATATTCCATCTGCCAATTCAAGTGACAAATaGGGGGCTTTGTCATCATATTTGACATCTTTAAGACTGTCCTTT +
Preference number: 5 (lower is better)
Translates to: SLTAANIPSANSSDK*GALSSYLTSLRLSF
Trigger: AAAGGACAGTCTTAAAGATGTCAAATATGATGACAAAGCCCCTCATTTGTCACTTGAATTGGCAGATGGAATATTGGCAGCAGTCAAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097399.6
CDS TCA 90 bp TGCAAATTCTTTGACTGCTGCCAATATTCCATCTGCCAATTCAAGTaGCAAATGAGGGGCTTTGTCATCATATTTGACATCTTTAAGACT +
Preference number: 5 (lower is better)
Translates to: CKFFDCCQYSICQFK*QMRGFVIIFDIFKT
Trigger: AGTCTTAAAGATGTCAAATATGATGACAAAGCCCCTCATTTGTCACTTGAATTGGCAGATGGAATATTGGCAGCAGTCAAAGAATTTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097399.6
CDS TCA 72 bp CAGGGCACTTTTCCATTCTTTGCCTACATCAGCAATTaGGTCATCAAACGGAGGTTCCACGTACTGAACATC +
Preference number: 6 (lower is better)
Translates to: QGTFPFFAYISN*VIKRRFHVLNI
Trigger: GATGTTCAGTACGTGGAACCTCCGTTTGATGACTCAATTGCTGATGTAGGCAAAGAATGGAAAAGTGCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097399.6
ENSMUST00000231584.2
ENSMUST00000232173.2
CDS CAA 72 bp CCAGGGCACTTTTCCATTCTTTGCCTACATCAGCAATaGAGTCATCAAACGGAGGTTCCACGTACTGAACAT +
Preference number: 6 (lower is better)
Translates to: PGHFSILCLHQQ*SHQTEVPRTEH
Trigger: ATGTTCAGTACGTGGAACCTCCGTTTGATGACTCAATTGCTGATGTAGGCAAAGAATGGAAAAGTGCCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097399.6
ENSMUST00000231584.2
ENSMUST00000232173.2
CDS CCA 72 bp CCACATCCCAGATCCATCTGCTGGCAATTTAGCATCTaGAAGAATGTCCACCTTGATTCCTTGACCTTTAAT +
Preference number: 6 (lower is better)
Translates to: PHPRSICWQFSI*KNVHLDSLTFN
Trigger: ATTAAAGGTCAAGGAATCAAGGTGGACATTCTTCCAGATGCTAAATTGCCAGCAGATGGATCTGGGATGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232173.2
CDS TCA 72 bp TTTGACTGCTGCCAATATTCCATCTGCCAATTCAAGTaGCAAATGAGGGGCTTTGTCATCATATTTGACATC +
Preference number: 6 (lower is better)
Translates to: FDCCQYSICQFK*QMRGFVIIFDI
Trigger: GATGTCAAATATGATGACAAAGCCCCTCATTTGTCACTTGAATTGGCAGATGGAATATTGGCAGCAGTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097399.6