Pregenerated sensors for DYNLT1F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095677Ensembl transcript IDs: ENSMUST00000179554.3
Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGACAAGTGGTACTGCCTGTCTCAGATGACAGGTGGCTGCTAATCTaGCTGAAGTCATGTGGTTCCTGTGACTGGGGAGTCATTTGGTTT | + |
|
Preference number: 1 (lower is better) Translates to: RQVVLPVSDDRWLLI*LKSCGSCDWGVIWF Trigger: AAACCAAATGACTCCCCAGTCACAGGAACCACATGACTTCAGCCAGATTAGCAGCCACCTGTCATCTGAGACAGGCAGTACCACTTGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179554.3 |
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| 3UTR-3UTR CCA 90 bp | GTGGTACTGCCTGTCTCAGATGACAGGTGGCTGCTAATCTGGCTGAAGTCATGTGTAGTTAAGATGGACTaGAAATGCTGGGACCACGAG | + |
|
Preference number: 2 (lower is better) Translates to: VVLPVSDDRWLLIWLKSCVVKMD*KCWDHE Trigger: CTCGTGGTCCCAGCATTTCCAGTCCATCTTAACTAC...ACATGACTTCAGCCAGATTAGCAGCCACCTGTCATCTGAGACAGGCAGTACCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179554.3 |
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| 3UTR CCA 72 bp | GTACTGCCTGTCTCAGATGACAGGTGGCTGCTAATCTaGCTGAAGTCATGTGGTTCCTGTGACTGGGGAGTC | + |
|
Preference number: 3 (lower is better) Translates to: VLPVSDDRWLLI*LKSCGSCDWGV Trigger: GACTCCCCAGTCACAGGAACCACATGACTTCAGCCAGATTAGCAGCCACCTGTCATCTGAGACAGGCAGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179554.3 |
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