Pregenerated sensors for DYNLRB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047459Ensembl transcript IDs: ENSMUST00000109682.9, ENSMUST00000150602.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CTGACTGGATCAGAGGCACTCCTTGTGGGGTGGGCAGAGCGACCCTaGATCAATGGCATGGTCTACACAGGCTCAGGTGGCCACCACGTG | + |
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Preference number: 2 (lower is better) Translates to: LTGSEALLVGWAERP*INGMVYTGSGGHHV Trigger: CACGTGGTGGCCACCTGAGCCTGTGTAGACCATGCCATTGATCAAGGGTCGCTCTGCCCACCCCACAAGGAGTGCCTCTGATCCAGTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| 3UTR TCA 72 bp | CAGAGGCACTCCTTGTGGGGTGGGCAGAGCGACCCTTaGTCAATGGCATGGTCTACACAGGCTCAGGTGGCC | + |
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Preference number: 3 (lower is better) Translates to: QRHSLWGGQSDP*SMAWSTQAQVA Trigger: GGCCACCTGAGCCTGTGTAGACCATGCCATTGATCAAGGGTCGCTCTGCCCACCCCACAAGGAGTGCCTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| 3UTR TCA 72 bp | ACACAGGCTCAGGTGGCCACCACGTGCCCACTGACATaGTTAGCACTATTATTCTTGGGGGACATTAAATTA | + |
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Preference number: 3 (lower is better) Translates to: TQAQVATTCPLT*LALLFLGDIKL Trigger: TAATTTAATGTCCCCCAAGAATAATAGTGCTAATCATGTCAGTGGGCACGTGGTGGCCACCTGAGCCTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| 3UTR TCA 72 bp | ACAGCTTTCCAAGGGGGACAAGGTGAACTGAAAGTTTaGAGAGCTGGGTGTGGGCTTATCATAAGCTCTCAT | + |
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Preference number: 3 (lower is better) Translates to: TAFQGGQGELKV*RAGCGLIISSH Trigger: ATGAGAGCTTATGATAAGCCCACACCCAGCTCTTCAAACTTTCAGTTCACCTTGTCCCCCTTGGAAAGCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109682.9 |
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| 3UTR CAA 72 bp | TCAGAGGCACTCCTTGTGGGGTGGGCAGAGCGACCCTaGATCAATGGCATGGTCTACACAGGCTCAGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: SEALLVGWAERP*INGMVYTGSGG Trigger: GCCACCTGAGCCTGTGTAGACCATGCCATTGATCAAGGGTCGCTCTGCCCACCCCACAAGGAGTGCCTCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR GCA 90 bp | CTCCTTGTGGGGTGGGCAGAGCGACCCTTGATCAATGGCATGGTCTACACAGGCTGTTTCCTCCACCTCTaGTTCCCAGAGCGGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LLVGWAERPLINGMVYTGCFLHL*FPERRR Trigger: CCTCCTCCGCTCTGGGAAGCAGAGGTGGAGGAAACA...GCCTGTGTAGACCATGCCATTGATCAAGGGTCGCTCTGCCCACCCCACAAGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150602.2 |
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| CDS-3UTR TCA 90 bp | GGGGCTGACTGGATCAGAGGCACTCCTTGTGGGGTGGGCAGAGCGACCCTTGATTGTCCATTGTGCTCTTaGTGGGAATGCCTTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: GADWIRGTPCGVGRATLDCPLCS*WECLLC Trigger: ACACAGAAGGCATTCCCATCAAGAGCACAATGGACA...ATCAAGGGTCGCTCTGCCCACCCCACAAGGAGTGCCTCTGATCCAGTCAGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR TCA 90 bp | GACTGGATCAGAGGCACTCCTTGTGGGGTGGGCAGAGCGACCCTTGATCAATGGACTCCTTTCTGGCTCTaGAGCCTCTTGAGTGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: DWIRGTPCGVGRATLDQWTPFWL*SLLSVS Trigger: GGAAACACTCAAGAGGCTTCAGAGCCAGAAAGGAGT...CCATTGATCAAGGGTCGCTCTGCCCACCCCACAAGGAGTGCCTCTGATCCAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR CCA 90 bp | GTGGGGTGGGCAGAGCGACCCTTGATCAATGGCATGGTCTACACAGGCTCAGGTAAGGTTAGGTCGTTTTaGGGGTCAATCTCACGCACA | + |
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Preference number: 4 (lower is better) Translates to: VGWAERPLINGMVYTGSGKVRSF*GSISRT Trigger: TGTGCGTGAGATTGACCCCCAAAACGACCTAACCTT...ACCTGAGCCTGTGTAGACCATGCCATTGATCAAGGGTCGCTCTGCCCACCCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR TCA 90 bp | GGTGGCCACCACGTGCCCACTGACATGATTAGCACTATTATTCTTGGGGGACATACTCCTTTCTGGCTCTaGAGCCTCTTGAGTGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GGHHVPTDMISTIILGGHTPFWL*SLLSVS Trigger: GGAAACACTCAAGAGGCTTCAGAGCCAGAAAGGAGT...ATGTCCCCCAAGAATAATAGTGCTAATCATGTCAGTGGGCACGTGGTGGCCACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR GCA 90 bp | GTGGGGTGGGCAGAGCGACCCTTGATCAATGGCATGGTCTACACAGGCTCAGGTTTCAAGATGAAGTTGTaGATGAGGTTGGCATACTGT | + |
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Preference number: 4 (lower is better) Translates to: VGWAERPLINGMVYTGSGFKMKL*MRLAYC Trigger: ACAGTATGCCAACCTCATGCACAACTTCATCTTGAA...ACCTGAGCCTGTGTAGACCATGCCATTGATCAAGGGTCGCTCTGCCCACCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR GCA 90 bp | CTCCTTGTGGGGTGGGCAGAGCGACCCTTGATCAATGGCATGGTCTACACAGGCTTCAAGATGAAGTTGTaGATGAGGTTGGCATACTGT | + |
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Preference number: 4 (lower is better) Translates to: LLVGWAERPLINGMVYTGFKMKL*MRLAYC Trigger: ACAGTATGCCAACCTCATGCACAACTTCATCTTGAA...GCCTGTGTAGACCATGCCATTGATCAAGGGTCGCTCTGCCCACCCCACAAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR TCA 90 bp | TCAGGTGGCCACCACGTGCCCACTGACATGATTAGCACTATTATTCTTGGGGGATGTCCATTGTGCTCTTaGTGGGAATGCCTTCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SGGHHVPTDMISTIILGGCPLCS*WECLLC Trigger: ACACAGAAGGCATTCCCATCAAGAGCACAATGGACA...TCCCCCAAGAATAATAGTGCTAATCATGTCAGTGGGCACGTGGTGGCCACCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR CCA 90 bp | TCAGGTGGCCACCACGTGCCCACTGACATGATTAGCACTATTATTCTTGGGGGAAAGGTTAGGTCGTTTTaGGGGTCAATCTCACGCACA | + |
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Preference number: 4 (lower is better) Translates to: SGGHHVPTDMISTIILGGKVRSF*GSISRT Trigger: TGTGCGTGAGATTGACCCCCAAAACGACCTAACCTT...TCCCCCAAGAATAATAGTGCTAATCATGTCAGTGGGCACGTGGTGGCCACCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR CAA 90 bp | GACTGGATCAGAGGCACTCCTTGTGGGGTGGGCAGAGCGACCCTTGATCAATGGGCCTTCAAGATGAAGTaGTGCATGAGGTTGGCATAC | + |
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Preference number: 5 (lower is better) Translates to: DWIRGTPCGVGRATLDQWAFKMK*CMRLAY Trigger: GTATGCCAACCTCATGCACAACTTCATCTTGAAGGC...CCATTGATCAAGGGTCGCTCTGCCCACCCCACAAGGAGTGCCTCTGATCCAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS GCA 90 bp | GGGTCAATCTCACGCACAGTGCTCCGCGCCTTCAAGATGAAGTTGTaGATGAGGTTGGCATACTGTGTAGTGGTGGGATTGTCCATTGTG | + |
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Preference number: 5 (lower is better) Translates to: GSISRTVLRAFKMKL*MRLAYCVVVGLSIV Trigger: CACAATGGACAATCCCACCACTACACAGTATGCCAACCTCATGCACAACTTCATCTTGAAGGCGCGGAGCACTGTGCGTGAGATTGACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS-3UTR CAA 90 bp | TCAGGTGGCCACCACGTGCCCACTGACATGATTAGCACTATTATTCTTGGGGGAGCCTTCAAGATGAAGTaGTGCATGAGGTTGGCATAC | + |
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Preference number: 5 (lower is better) Translates to: SGGHHVPTDMISTIILGGAFKMK*CMRLAY Trigger: GTATGCCAACCTCATGCACAACTTCATCTTGAAGGC...TCCCCCAAGAATAATAGTGCTAATCATGTCAGTGGGCACGTGGTGGCCACCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS GCA 72 bp | TCACGCACAGTGCTCCGCGCCTTCAAGATGAAGTTGTaGATGAGGTTGGCATACTGTGTAGTGGTGGGATTG | + |
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Preference number: 6 (lower is better) Translates to: SRTVLRAFKMKL*MRLAYCVVVGL Trigger: CAATCCCACCACTACACAGTATGCCAACCTCATGCACAACTTCATCTTGAAGGCGCGGAGCACTGTGCGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS CAA 72 bp | ATCTCACGCACAGTGCTCCGCGCCTTCAAGATGAAGTaGTGCATGAGGTTGGCATACTGTGTAGTGGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: ISRTVLRAFKMK*CMRLAYCVVVG Trigger: TCCCACCACTACACAGTATGCCAACCTCATGCACAACTTCATCTTGAAGGCGCGGAGCACTGTGCGTGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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| CDS CAA 90 bp | TGGGGGTCAATCTCACGCACAGTGCTCCGCGCCTTCAAGATGAAGTaGTGCATGAGGTTGGCATACTGTGTAGTGGTGGGATTGTCCATT | + |
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Preference number: 6 (lower is better) Translates to: WGSISRTVLRAFKMK*CMRLAYCVVVGLSI Trigger: AATGGACAATCCCACCACTACACAGTATGCCAACCTCATGCACAACTTCATCTTGAAGGCGCGGAGCACTGTGCGTGAGATTGACCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000109682.9 ENSMUST00000150602.2 |
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