RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DYNLL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020483

Ensembl transcript IDs: ENSMUST00000020775.9, ENSMUST00000107923.10, ENSMUST00000146941.2, ENSMUST00000178105.3

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGTACACAGTCCATGCAGTAGCACAGCCATTGGAGAGGACTTCCTaGTGCTGGCCCCAGTGCAACAGTCCCAGCAACGCCGCCTGCTTG +
Preference number: 1 (lower is better)
Translates to: EYTVHAVAQPLERTS*CWPQCNSPSNAACL
Trigger: CAAGCAGGCGGCGTTGCTGGGACTGTTGCACTGGGGCCAGCATCAGGAAGTCCTCTCCAATGGCTGTGCTACTGCATGGACTGTGTACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR CCA 90 bp CCCAGATCCAACTCCAGGAAAGATGTTAGTATGGCCATCCTGTTCTaGGTGACCTTCCAAAACCTTTCCCAGGGAACAGACAGCCACAAG +
Preference number: 1 (lower is better)
Translates to: PRSNSRKDVSMAILF*VTFQNLSQGTDSHK
Trigger: CTTGTGGCTGTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAGGATGGCCATACTAACATCTTTCCTGGAGTTGGATCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
3UTR GCA 90 bp TCTCACCCTCACAACAGGGAACATAAAAGCCCACTTAGAACTAACTaGCCTCTACTTCCCATACACCCTAGAGATTCCACTTATCCTGCC +
Preference number: 1 (lower is better)
Translates to: SHPHNREHKSPLRTN*PLLPIHPRDSTYPA
Trigger: GGCAGGATAAGTGGAATCTCTAGGGTGTATGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTTGTGAGGGTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CGAGGGCTAAGCAGGGAGCAGACAGAATGTAAAGGGGAAGTCAGGCTAACCCTAGCAACGCCGCCTGCTTaGCATCGCTGCCGCCGCCAC +
Preference number: 2 (lower is better)
Translates to: RGLSREQTECKGEVRLTLATPPA*HRCRRH
Trigger: GTGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGC...TAGGGTTAGCCTGACTTCCCCTTTACATTCTGTCTGCTCCCTGCTTAGCCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR TCA 90 bp CCCCACCCACCCCAATCATGTCACCGACAGACAAGGTTTCCCTTGCACTCTTCTTTGGAGAGGACTTCCTaGTGCTGGCCCCAGTGCAAC +
Preference number: 2 (lower is better)
Translates to: PHPPQSCHRQTRFPLHSSLERTS*CWPQCN
Trigger: GTTGCACTGGGGCCAGCATCAGGAAGTCCTCTCCAA...AGAAGAGTGCAAGGGAAACCTTGTCTGTCGGTGACATGATTGGGGTGGGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CCAACCTGTTCTCACCCTCACAACAGGGAACATAAAAGCCCACTTAGAACTAACGCAACGCCGCCTGCTTaGCATCGCTGCCGCCGCCAC +
Preference number: 2 (lower is better)
Translates to: PTCSHPHNREHKSPLRTNATPPA*HRCRRH
Trigger: GTGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGC...GTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTTGTGAGGGTGAGAACAGGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp AGATTTCCCCACCCCTTACAGTGTCAACCCTATGCGAGTTCTGAATGTGATTCACCCAGCAACGCCGCCTaGTTGCCATCGCTGCCGCCG +
Preference number: 2 (lower is better)
Translates to: RFPHPLQCQPYASSECDSPSNAA*LPSLPP
Trigger: CGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCTGGG...TGAATCACATTCAGAACTCGCATAGGGTTGACACTGTAAGGGGTGGGGAAATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp AACAGGGAACATAAAAGCCCACTTAGAACTAACTGCCCTCTACTTCCCATACACCCCAGCAACGCCGCCTaGTTGCCATCGCTGCCGCCG +
Preference number: 2 (lower is better)
Translates to: NREHKSPLRTNCPLLPIHPSNAA*LPSLPP
Trigger: CGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCTGGG...GTGTATGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CTAGTCCTTAGGGCTTCGAGGAGGGCCTTTTATTTTTATCTAGGGAGAGAAGAGCCTGCTTGCCATCGCTaGCGCCGCCACGGACACCTT +
Preference number: 2 (lower is better)
Translates to: LVLRASRRAFYFYLGREEPACHR*RRHGHL
Trigger: AAGGTGTCCGTGGCGGCGGCAGCGATGGCAAGCAGG...CTCTTCTCTCCCTAGATAAAAATAAAAGGCCCTCCTCGAAGCCCTAAGGACTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CTTAAAAACAAACGCAAAGCAGCCTTCTTCCCCAGGCAACTAAACAGAAAGGAGCCTGCTTGCCATCGCTaGCGCCGCCACGGACACCTT +
Preference number: 2 (lower is better)
Translates to: LKNKRKAAFFPRQLNRKEPACHR*RRHGHL
Trigger: AAGGTGTCCGTGGCGGCGGCAGCGATGGCAAGCAGG...CTCCTTTCTGTTTAGTTGCCTGGGGAAGAAGGCTGCTTTGCGTTTGTTTTTAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CCTGTTCTGGGTGACCTTCCAAAACCTTTCCCAGGGAACAGACAGCCACAAGGCCGAGTACACAGTCCATaGAGTAGCACAGCCATTGGA +
Preference number: 2 (lower is better)
Translates to: PVLGDLPKPFPGNRQPQGRVHSP*SSTAIG
Trigger: TCCAATGGCTGTGCTACTGCATGGACTGTGTACTCG...GCCTTGTGGCTGTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CCACCCCATCACTTCCATTCTCACTTCCCACTAGAGACCAGTCACCTGGTCCCACACCAGAAATTCCCTTaGCAGCCAACAATAGGGGCT +
Preference number: 2 (lower is better)
Translates to: PPHHFHSHFPLETSHLVPHQKFP*QPTIGA
Trigger: AGCCCCTATTGTTGGCTGGCAAGGGAATTTCTGGTG...TGGGACCAGGTGACTGGTCTCTAGTGGGAAGTGAGAATGGAAGTGATGGGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CCACCCCAATCATGTCACCGACAGACAAGGTTTCCCTTGCACTCTTCTCTGGAACCATTCTCCACCTCCTaGCTCCCAGAGGTCATTGCT +
Preference number: 2 (lower is better)
Translates to: PPQSCHRQTRFPLHSSLEPFSTS*LPEVIA
Trigger: AGCAATGACCTCTGGGAGGCAGGAGGTGGAGAATGG...TTCCAGAGAAGAGTGCAAGGGAAACCTTGTCTGTCGGTGACATGATTGGGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR TCA 90 bp AGATCCAACTCCAGGAAAGATGTTAGTATGGCCATCCTGTTCTGGGTGACCTTCTTGGAGAGGACTTCCTaGTGCTGGCCCCAGTGCAAC +
Preference number: 2 (lower is better)
Translates to: RSNSRKDVSMAILFWVTFLERTS*CWPQCN
Trigger: GTTGCACTGGGGCCAGCATCAGGAAGTCCTCTCCAA...GAAGGTCACCCAGAACAGGATGGCCATACTAACATCTTTCCTGGAGTTGGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp CTGTTCTGGGTGACCTTCCAAAACCTTTCCCAGGGAACAGACAGCCACAAGGCAAGATTCCACTTATCCTaGCCCTTCCCACCCTTCTAC +
Preference number: 2 (lower is better)
Translates to: LFWVTFQNLSQGTDSHKARFHLS*PFPPFY
Trigger: GTAGAAGGGTGGGAAGGGGCAGGATAAGTGGAATCT...TGCCTTGTGGCTGTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR TCA 90 bp CCCCACCCACCCCAATCATGTCACCGACAGACAAGGTTTCCCTTGCACTCTTCTAGAACTGACGGGCATTaGTTTGGTTTGATTGCTAAG +
Preference number: 2 (lower is better)
Translates to: PHPPQSCHRQTRFPLHSSRTDGH*FGLIAK
Trigger: CTTAGCAATCAAACCAAATCAATGCCCGTCAGTTCT...AGAAGAGTGCAAGGGAAACCTTGTCTGTCGGTGACATGATTGGGGTGGGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp AGAAAGGAGTTTGGTTTTTGTTTACTGCGACACACACATGAAATCGAGTACACACCTGCTTGCCATCGCTaGCGCCGCCACGGACACCTT +
Preference number: 2 (lower is better)
Translates to: RKEFGFCLLRHTHEIEYTPACHR*RRHGHL
Trigger: AAGGTGTCCGTGGCGGCGGCAGCGATGGCAAGCAGG...TGTGTACTCGATTTCATGTGTGTGTCGCAGTAAACAAAAACCAAACTCCTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp AGCCCACTTAGAACTAACTGCCCTCTACTTCCCATACACCCTAGAGATTCCACTCGAGTACACAGTCCATaGAGTAGCACAGCCATTGGA +
Preference number: 2 (lower is better)
Translates to: SPLRTNCPLLPIHPRDSTRVHSP*SSTAIG
Trigger: TCCAATGGCTGTGCTACTGCATGGACTGTGTACTCG...AGTGGAATCTCTAGGGTGTATGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp AGATTTCCCCACCCCTTACAGTGTCAACCCTATGCGAGTTCTGAATGTGATTCAAGATTCCACTTATCCTaGCCCTTCCCACCCTTCTAC +
Preference number: 2 (lower is better)
Translates to: RFPHPLQCQPYASSECDSRFHLS*PFPPFY
Trigger: GTAGAAGGGTGGGAAGGGGCAGGATAAGTGGAATCT...TGAATCACATTCAGAACTCGCATAGGGTTGACACTGTAAGGGGTGGGGAAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR GCA 90 bp GTCCTTAGGGCTTCGAGGAGGGCCTTTTATTTTTATCTAGGGAGAGAAGAGAAACGAGTACACAGTCCATaGAGTAGCACAGCCATTGGA +
Preference number: 2 (lower is better)
Translates to: VLRASRRAFYFYLGREEKRVHSP*SSTAIG
Trigger: TCCAATGGCTGTGCTACTGCATGGACTGTGTACTCG...TTTCTCTTCTCTCCCTAGATAAAAATAAAAGGCCCTCCTCGAAGCCCTAAGGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR CCA 90 bp CTACAGTCACCAGAAATTCCCTTGCCAGCCAACAATAGGGGCTGCTCTAAGAGAATAGTCACAGTTCTGTaGAATATTCTCCCCGGTACT +
Preference number: 2 (lower is better)
Translates to: LQSPEIPLPANNRGCSKRIVTVL*NILPGT
Trigger: AGTACCGGGGAGAATATTCCACAGAACTGTGACTAT...TCTCTTAGAGCAGCCCCTATTGTTGGCTGGCAAGGGAATTTCTGGTGACTGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR GCA 72 bp GGCCCCAGTGCAACAGTCCCAGCAACGCCGCCTGCTTaGCATCGCTGCCGCCGCCACGGACACCTTCGCCTC +
Preference number: 3 (lower is better)
Translates to: GPSATVPATPPA*HRCRRHGHLRL
Trigger: GAGGCGAAGGTGTCCGTGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCTGGGACTGTTGCACTGGGGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR GCA 72 bp TGCTGGCCCCAGTGCAACAGTCCCAGCAACGCCGCCTaGTTGCCATCGCTGCCGCCGCCACGGACACCTTCG +
Preference number: 3 (lower is better)
Translates to: CWPQCNSPSNAA*LPSLPPPRTPS
Trigger: CGAAGGTGTCCGTGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCTGGGACTGTTGCACTGGGGCCAGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR CAA 90 bp GGGCTAAGCAGGGAGCAGACAGAATGTAAAGGGGAAGTCAGGCTAACCCTACTCAGCAACGCCGCCTGCTaGCCATCGCTGCCGCCGCCA +
Preference number: 3 (lower is better)
Translates to: GLSREQTECKGEVRLTLLSNAAC*PSLPPP
Trigger: TGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCT...GAGTAGGGTTAGCCTGACTTCCCCTTTACATTCTGTCTGCTCCCTGCTTAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR CAA 90 bp GCTATACTTCAGACCTGTTCCAAGGAGCCCTCCACCCCATCACTTCCATTCTCAAGCAACGCCGCCTGCTaGCCATCGCTGCCGCCGCCA +
Preference number: 3 (lower is better)
Translates to: AILQTCSKEPSTPSLPFSSNAAC*PSLPPP
Trigger: TGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCT...TGAGAATGGAAGTGATGGGGTGGAGGGCTCCTTGGAACAGGTCTGAAGTATAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR TCA 72 bp GTCCATGCAGTAGCACAGCCATTGGAGAGGACTTCCTaGTGCTGGCCCCAGTGCAACAGTCCCAGCAACGCC +
Preference number: 3 (lower is better)
Translates to: VHAVAQPLERTS*CWPQCNSPSNA
Trigger: GGCGTTGCTGGGACTGTTGCACTGGGGCCAGCATCAGGAAGTCCTCTCCAATGGCTGTGCTACTGCATGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR GCA 72 bp GTCAGCCTTCTCCACCTCCTGCCTCCCAGAGGTCATTaGTATACTTCAGACCTGTTCCAGGAGCCCTCCACC +
Preference number: 3 (lower is better)
Translates to: VSLLHLLPPRGH*YTSDLFQEPST
Trigger: GGTGGAGGGCTCCTGGAACAGGTCTGAAGTATAGCAATGACCTCTGGGAGGCAGGAGGTGGAGAAGGCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR CAA 90 bp CCAACCTGTTCTCACCCTCACAACAGGGAACATAAAAGCCCACTTAGAACTAACAGCAACGCCGCCTGCTaGCCATCGCTGCCGCCGCCA +
Preference number: 3 (lower is better)
Translates to: PTCSHPHNREHKSPLRTNSNAAC*PSLPPP
Trigger: TGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCT...GTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTTGTGAGGGTGAGAACAGGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR GCA 72 bp GCCTCCTACAGCAGCACCCACCACCCAAGAGGCACCTaGAGCTTAACTTCCACCTCAGACCTATTTCTATTC +
Preference number: 3 (lower is better)
Translates to: ASYSSTHHPRGT*SLTSTSDLFLF
Trigger: GAATAGAAATAGGTCTGAGGTGGAAGTTAAGCTGCAGGTGCCTCTTGGGTGGTGGGTGCTGCTGTAGGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR GCA 72 bp ACTTCCATTCTCCACCTCCTGCCTCCCAGAGGTCATTaGTATACTTCAGACCTGTTCCAAGGAGCCCTCCAC +
Preference number: 3 (lower is better)
Translates to: TSILHLLPPRGH*YTSDLFQGALH
Trigger: GTGGAGGGCTCCTTGGAACAGGTCTGAAGTATAGCAATGACCTCTGGGAGGCAGGAGGTGGAGAATGGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR GCA 72 bp CACCCCAATCATGTCACCGACAGACAAGGTTTCCCTTaGACTCTTCTCTGGAATCTCCTCCCAGTCAGCCTT +
Preference number: 3 (lower is better)
Translates to: HPNHVTDRQGFP*TLLWNLLPVSL
Trigger: AAGGCTGACTGGGAGGAGATTCCAGAGAAGAGTGCAAGGGAAACCTTGTCTGTCGGTGACATGATTGGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR TCA 72 bp CCAGGAAAGATGTTAGTATGGCCATCCTGTTCTGGGTaGCCTTCCAAAACCTTTCCCAGGGAACAGACAGCC +
Preference number: 3 (lower is better)
Translates to: PGKMLVWPSCSG*PSKTFPREQTA
Trigger: GGCTGTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAGGATGGCCATACTAACATCTTTCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
3UTR-3UTR CAA 90 bp CCTGTTCTGGGTGACCTTCCAAAACCTTTCCCAGGGAACAGACAGCCACAAGGCAAAGGAGTTTGGTTTTaGTTTACTGCGACACACACA +
Preference number: 3 (lower is better)
Translates to: PVLGDLPKPFPGNRQPQGKGVWF*FTATHT
Trigger: TGTGTGTGTCGCAGTAAACAAAAACCAAACTCCTTT...GCCTTGTGGCTGTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR CAA 90 bp GCCATAGTCACAGTTCTGTGGAATATTCTCCCCGGTACTAGAGCCACCACCCCCAAAGGAGTTTGGTTTTaGTTTACTGCGACACACACA +
Preference number: 3 (lower is better)
Translates to: AIVTVLWNILPGTRATTPKGVWF*FTATHT
Trigger: TGTGTGTGTCGCAGTAAACAAAAACCAAACTCCTTT...GGGGGTGGTGGCTCTAGTACCGGGGAGAATATTCCACAGAACTGTGACTATGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR-3UTR CAA 90 bp TTCCCCACCCCTTACAGTGTCAACCCTATGCGAGTTCTGAATGTGATTCATAAGTCACCAGAAATTCCCTaGCCAGCCAACAATAGGGGC +
Preference number: 3 (lower is better)
Translates to: FPTPYSVNPMRVLNVIHKSPEIP*PANNRG
Trigger: GCCCCTATTGTTGGCTGGCAAGGGAATTTCTGGTGA...CTTATGAATCACATTCAGAACTCGCATAGGGTTGACACTGTAAGGGGTGGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR CCA 72 bp AACTCCAGGAAAGATGTTAGTATGGCCATCCTGTTCTaGGTGACCTTCCAAAACCTTTCCCAGGGAACAGAC +
Preference number: 3 (lower is better)
Translates to: NSRKDVSMAILF*VTFQNLSQGTD
Trigger: GTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAGGATGGCCATACTAACATCTTTCCTGGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
3UTR GCA 72 bp CACAACAGGGAACATAAAAGCCCACTTAGAACTAACTaGCCTCTACTTCCCATACACCCTAGAGATTCCACT +
Preference number: 3 (lower is better)
Translates to: HNREHKSPLRTN*PLLPIHPRDST
Trigger: AGTGGAATCTCTAGGGTGTATGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp CCAGTGCAACAGTCCCAGCAACGCCGCCTGCTTGCCATCGCTGCCGCCGCCACGTCAACGGCATCCTGTTaGATGTCCTCAGACATGTCT +
Preference number: 4 (lower is better)
Translates to: PVQQSQQRRLLAIAAAATSTASC*MSSDMS
Trigger: AGACATGTCTGAGGACATGCAACAGGATGCCGTTGA...CGTGGCGGCGGCAGCGATGGCAAGCAGGCGGCGTTGCTGGGACTGTTGCACTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp AACCCTGTCCTCACAGCCTCCCCGGCCTCCTACAGCAGCACCCACCACCCAAGAGTCCTCAGACATGTCTaGGTTCTTGATCACTGCCTT +
Preference number: 4 (lower is better)
Translates to: NPVLTASPASYSSTHHPRVLRHV*VLDHCL
Trigger: AAGGCAGTGATCAAGAACGCAGACATGTCTGAGGAC...TCTTGGGTGGTGGGTGCTGCTGTAGGAGGCCGGGGAGGCTGTGAGGACAGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp CTAACCCTGTCCTCACAGCCTCCCCGGCCTCCTACAGCAGCACCCACCACCCAACGGCCCACGATACAATaGCAGGTAGGGTTATATTTC +
Preference number: 4 (lower is better)
Translates to: LTLSSQPPRPPTAAPTTQRPTIQ*QVGLYF
Trigger: GAAATATAACCCTACCTGGCATTGTATCGTGGGCCG...TTGGGTGGTGGGTGCTGCTGTAGGAGGCCGGGGAGGCTGTGAGGACAGGGTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp AGCCCTCCACCCCATCACTTCCATTCTCACTTCCCACTAGAGACCAGTCACCTGACATGTCTGCGTTCTTaGTCACTGCCTTCCGGTCAG +
Preference number: 4 (lower is better)
Translates to: SPPPHHFHSHFPLETSHLTCLRS*SLPSGQ
Trigger: CTGACCGGAAGGCAGTGATCAAGAACGCAGACATGT...CAGGTGACTGGTCTCTAGTGGGAAGTGAGAATGGAAGTGATGGGGTGGAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR CCA 90 bp CTACTTCCCATACACCCTAGAGATTCCACTTATCCTGCCCCTTCCCACCCTCAGTCTCCATGGCCTGTGTaGCACAGTCAACGGCATCCT +
Preference number: 4 (lower is better)
Translates to: LLPIHPRDSTYPAPSHPQSPWPV*HSQRHP
Trigger: AGGATGCCGTTGACTGTGCCACACAGGCCATGGAGA...CTGAGGGTGGGAAGGGGCAGGATAAGTGGAATCTCTAGGGTGTATGGGAAGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146941.2
CDS-3UTR CCA 90 bp CGAGGGCTAAGCAGGGAGCAGACAGAATGTAAAGGGGAAGTCAGGCTAACCCTATCTCCATGGCCTGTGTaGCACAGTCAACGGCATCCT +
Preference number: 4 (lower is better)
Translates to: RGLSREQTECKGEVRLTLSPWPV*HSQRHP
Trigger: AGGATGCCGTTGACTGTGCCACACAGGCCATGGAGA...TAGGGTTAGCCTGACTTCCCCTTTACATTCTGTCTGCTCCCTGCTTAGCCCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
3UTR CAA 72 bp CACTTCCATTCTCCACCTCCTGCCTCCCAGAGGTCATaGCTATACTTCAGACCTGTTCCAAGGAGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: HFHSPPPASQRS*LYFRPVPRSPP
Trigger: TGGAGGGCTCCTTGGAACAGGTCTGAAGTATAGCAATGACCTCTGGGAGGCAGGAGGTGGAGAATGGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp CATTCTCACTTCCCACTAGAGACCAGTCACCTGGTCCCAGATCCAACTCCAGGAACATGTCTGCGTTCTTaGTCACTGCCTTCCGGTCAG +
Preference number: 4 (lower is better)
Translates to: HSHFPLETSHLVPDPTPGTCLRS*SLPSGQ
Trigger: CTGACCGGAAGGCAGTGATCAAGAACGCAGACATGT...TCCTGGAGTTGGATCTGGGACCAGGTGACTGGTCTCTAGTGGGAAGTGAGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp TGCTATACTTCAGACCTGTTCCAAGGAGCCCTCCACCCCATCACTTCCATTCTCACATGTCTGCGTTCTTaGTCACTGCCTTCCGGTCAG +
Preference number: 4 (lower is better)
Translates to: CYTSDLFQGALHPITSILTCLRS*SLPSGQ
Trigger: CTGACCGGAAGGCAGTGATCAAGAACGCAGACATGT...GAGAATGGAAGTGATGGGGTGGAGGGCTCCTTGGAACAGGTCTGAAGTATAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp CCCTCCACCCCATCACTTCCATTCTCACTTCCCACTAGAGACCAGTCACCTGGTGCTTTGTCTCGTGTGTaGCATAGCTGCCAAAATTCC +
Preference number: 4 (lower is better)
Translates to: PSTPSLPFSLPTRDQSPGALSRV*HSCQNS
Trigger: GGAATTTTGGCAGCTATGTCACACACGAGACAAAGC...ACCAGGTGACTGGTCTCTAGTGGGAAGTGAGAATGGAAGTGATGGGGTGGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp AGCCCTCCACCCCATCACTTCCATTCTCACTTCCCACTAGAGACCAGTCACCTGGTCCTCAGACATGTCTaGGTTCTTGATCACTGCCTT +
Preference number: 4 (lower is better)
Translates to: SPPPHHFHSHFPLETSHLVLRHV*VLDHCL
Trigger: AAGGCAGTGATCAAGAACGCAGACATGTCTGAGGAC...CAGGTGACTGGTCTCTAGTGGGAAGTGAGAATGGAAGTGATGGGGTGGAGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR CCA 90 bp CCCTCCACCCCATCACTTCCATTCTCACTTCCCACTAGAGACCAGTCACCTGGTTGTTGTACTTCTCCATaGCCTGTGTGGCACAGTCAA +
Preference number: 4 (lower is better)
Translates to: PSTPSLPFSLPTRDQSPGCCTSP*PVWHSQ
Trigger: TTGACTGTGCCACACAGGCCATGGAGAAGTACAACA...ACCAGGTGACTGGTCTCTAGTGGGAAGTGAGAATGGAAGTGATGGGGTGGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp GCCCTCCTAGTCCTTAGGGCTTCGAGGAGGGCCTTTTATTTTTATCTAGGGAGAACATGTCTGCGTTCTTaGTCACTGCCTTCCGGTCAG +
Preference number: 4 (lower is better)
Translates to: ALLVLRASRRAFYFYLGRTCLRS*SLPSGQ
Trigger: CTGACCGGAAGGCAGTGATCAAGAACGCAGACATGT...TCTCCCTAGATAAAAATAAAAGGCCCTCCTCGAAGCCCTAAGGACTAGGAGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp CTGTTCTGGGTGACCTTCCAAAACCTTTCCCAGGGAACAGACAGCCACAAGGCAGTCCTCAGACATGTCTaGGTTCTTGATCACTGCCTT +
Preference number: 4 (lower is better)
Translates to: LFWVTFQNLSQGTDSHKAVLRHV*VLDHCL
Trigger: AAGGCAGTGATCAAGAACGCAGACATGTCTGAGGAC...TGCCTTGTGGCTGTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR CCA 90 bp CTCACAACAGGGAACATAAAAGCCCACTTAGAACTAACTGCCCTCTACTTCCCATCTCCATGGCCTGTGTaGCACAGTCAACGGCATCCT +
Preference number: 4 (lower is better)
Translates to: LTTGNIKAHLELTALYFPSPWPV*HSQRHP
Trigger: AGGATGCCGTTGACTGTGCCACACAGGCCATGGAGA...TGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTTGTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR CCA 90 bp TTCCCCACCCCTTACAGTGTCAACCCTATGCGAGTTCTGAATGTGATTCATAAGTCTCCATGGCCTGTGTaGCACAGTCAACGGCATCCT +
Preference number: 4 (lower is better)
Translates to: FPTPYSVNPMRVLNVIHKSPWPV*HSQRHP
Trigger: AGGATGCCGTTGACTGTGCCACACAGGCCATGGAGA...CTTATGAATCACATTCAGAACTCGCATAGGGTTGACACTGTAAGGGGTGGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp CCTGTTCTGGGTGACCTTCCAAAACCTTTCCCAGGGAACAGACAGCCACAAGGCCCAAGTAAAAATAGATaGAGTGCTTTGTCTCGTGTG +
Preference number: 4 (lower is better)
Translates to: PVLGDLPKPFPGNRQPQGPSKNR*SALSRV
Trigger: CACACGAGACAAAGCACTTCATCTATTTTTACTTGG...GCCTTGTGGCTGTCTGTTCCCTGGGAAAGGTTTTGGAAGGTCACCCAGAACAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp CATTCTCACTTCCCACTAGAGACCAGTCACCTGGTCCCAGATCCAACTCCAGGACCAAGTAAAAATAGATaGAGTGCTTTGTCTCGTGTG +
Preference number: 4 (lower is better)
Translates to: HSHFPLETSHLVPDPTPGPSKNR*SALSRV
Trigger: CACACGAGACAAAGCACTTCATCTATTTTTACTTGG...TCCTGGAGTTGGATCTGGGACCAGGTGACTGGTCTCTAGTGGGAAGTGAGAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp CATTCTCACTTCCCACTAGAGACCAGTCACCTGGTCCCAGATCCAACTCCAGGACTTGAAGAGGAGGATTaGAACTTGACCCAAGTAAAA +
Preference number: 4 (lower is better)
Translates to: HSHFPLETSHLVPDPTPGLEEED*NLTQVK
Trigger: TTTTACTTGGGTCAAGTTGCAATCCTCCTCTTCAAG...TCCTGGAGTTGGATCTGGGACCAGGTGACTGGTCTCTAGTGGGAAGTGAGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp CTAGTCCTTAGGGCTTCGAGGAGGGCCTTTTATTTTTATCTAGGGAGAGAAGAGGCAAAGCAGCCTTCTTaGTATAGGCAGCAATGTCCT +
Preference number: 4 (lower is better)
Translates to: LVLRASRRAFYFYLGREEAKQPS*YRQQCP
Trigger: AGGACATTGCTGCCTATATCAAGAAGGCTGCTTTGC...CTCTTCTCTCCCTAGATAAAAATAAAAGGCCCTCCTCGAAGCCCTAAGGACTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146941.2
CDS-3UTR GCA 90 bp TCCAGGAAAGATGTTAGTATGGCCATCCTGTTCTGGGTGACCTTCCAAAACCTTGTCCTCAGACATGTCTaGGTTCTTGATCACTGCCTT +
Preference number: 4 (lower is better)
Translates to: SRKDVSMAILFWVTFQNLVLRHV*VLDHCL
Trigger: AAGGCAGTGATCAAGAACGCAGACATGTCTGAGGAC...AAGGTTTTGGAAGGTCACCCAGAACAGGATGGCCATACTAACATCTTTCCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp TCCAGGAAAGATGTTAGTATGGCCATCCTGTTCTGGGTGACCTTCCAAAACCTTCGGCCCACGATACAATaGCAGGTAGGGTTATATTTC +
Preference number: 4 (lower is better)
Translates to: SRKDVSMAILFWVTFQNLRPTIQ*QVGLYF
Trigger: GAAATATAACCCTACCTGGCATTGTATCGTGGGCCG...AAGGTTTTGGAAGGTCACCCAGAACAGGATGGCCATACTAACATCTTTCCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp CTAGTCCTTAGGGCTTCGAGGAGGGCCTTTTATTTTTATCTAGGGAGAGAAGAGCGGCCCACGATACAATaGCAGGTAGGGTTATATTTC +
Preference number: 4 (lower is better)
Translates to: LVLRASRRAFYFYLGREERPTIQ*QVGLYF
Trigger: GAAATATAACCCTACCTGGCATTGTATCGTGGGCCG...CTCTTCTCTCCCTAGATAAAAATAAAAGGCCCTCCTCGAAGCCCTAAGGACTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp AGCCCACTTAGAACTAACTGCCCTCTACTTCCCATACACCCTAGAGATTCCACTCTTGAAGAGGAGGATTaGAACTTGACCCAAGTAAAA +
Preference number: 4 (lower is better)
Translates to: SPLRTNCPLLPIHPRDSTLEEED*NLTQVK
Trigger: TTTTACTTGGGTCAAGTTGCAATCCTCCTCTTCAAG...AGTGGAATCTCTAGGGTGTATGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR TCA 90 bp CTAGTCCTTAGGGCTTCGAGGAGGGCCTTTTATTTTTATCTAGGGAGAGAAGAGCCAAGTAAAAATAGATaGAGTGCTTTGTCTCGTGTG +
Preference number: 4 (lower is better)
Translates to: LVLRASRRAFYFYLGREEPSKNR*SALSRV
Trigger: CACACGAGACAAAGCACTTCATCTATTTTTACTTGG...CTCTTCTCTCCCTAGATAAAAATAAAAGGCCCTCCTCGAAGCCCTAAGGACTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR GCA 90 bp TCCAGGAAAGATGTTAGTATGGCCATCCTGTTCTGGGTGACCTTCCAAAACCTTCTTGAAGAGGAGGATTaGAACTTGACCCAAGTAAAA +
Preference number: 4 (lower is better)
Translates to: SRKDVSMAILFWVTFQNLLEEED*NLTQVK
Trigger: TTTTACTTGGGTCAAGTTGCAATCCTCCTCTTCAAG...AAGGTTTTGGAAGGTCACCCAGAACAGGATGGCCATACTAACATCTTTCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp CTAACCCTGTCCTCACAGCCTCCCCGGCCTCCTACAGCAGCACCCACCACCCAAGACATGTCTGCGTTCTaGATCACTGCCTTCCGGTCA +
Preference number: 5 (lower is better)
Translates to: LTLSSQPPRPPTAAPTTQDMSAF*ITAFRS
Trigger: TGACCGGAAGGCAGTGATCAAGAACGCAGACATGTC...TTGGGTGGTGGGTGCTGCTGTAGGAGGCCGGGGAGGCTGTGAGGACAGGGTTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp CCAACCTGTTCTCACCCTCACAACAGGGAACATAAAAGCCCACTTAGAACTAACGACATGTCTGCGTTCTaGATCACTGCCTTCCGGTCA +
Preference number: 5 (lower is better)
Translates to: PTCSHPHNREHKSPLRTNDMSAF*ITAFRS
Trigger: TGACCGGAAGGCAGTGATCAAGAACGCAGACATGTC...GTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTTGTGAGGGTGAGAACAGGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp CTCACAACAGGGAACATAAAAGCCCACTTAGAACTAACTGCCCTCTACTTCCCAGACATGTCTGCGTTCTaGATCACTGCCTTCCGGTCA +
Preference number: 5 (lower is better)
Translates to: LTTGNIKAHLELTALYFPDMSAF*ITAFRS
Trigger: TGACCGGAAGGCAGTGATCAAGAACGCAGACATGTC...TGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCTTTTATGTTCCCTGTTGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp GTCCTTAGGGCTTCGAGGAGGGCCTTTTATTTTTATCTAGGGAGAGAAGAGAAAGTCAACGGCATCCTGTaGCATGTCCTCAGACATGTC +
Preference number: 5 (lower is better)
Translates to: VLRASRRAFYFYLGREEKVNGIL*HVLRHV
Trigger: GACATGTCTGAGGACATGCAACAGGATGCCGTTGAC...TTTCTCTTCTCTCCCTAGATAAAAATAAAAGGCCCTCCTCGAAGCCCTAAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000146941.2
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp TGCTATACTTCAGACCTGTTCCAAGGAGCCCTCCACCCCATCACTTCCATTCTCGAGGAGGATTGCAACTaGACCCAAGTAAAAATAGAT +
Preference number: 5 (lower is better)
Translates to: CYTSDLFQGALHPITSILEEDCN*TQVKID
Trigger: ATCTATTTTTACTTGGGTCAAGTTGCAATCCTCCTC...GAGAATGGAAGTGATGGGGTGGAGGGCTCCTTGGAACAGGTCTGAAGTATAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp AGAAAGGAGTTTGGTTTTTGTTTACTGCGACACACACATGAAATCGAGTACACAGTCAACGGCATCCTGTaGCATGTCCTCAGACATGTC +
Preference number: 5 (lower is better)
Translates to: RKEFGFCLLRHTHEIEYTVNGIL*HVLRHV
Trigger: GACATGTCTGAGGACATGCAACAGGATGCCGTTGAC...TGTGTACTCGATTTCATGTGTGTGTCGCAGTAAACAAAAACCAAACTCCTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp AGGGAACATAAAAGCCCACTTAGAACTAACTGCCCTCTACTTCCCATACACCCTGAGGAGGATTGCAACTaGACCCAAGTAAAAATAGAT +
Preference number: 5 (lower is better)
Translates to: REHKSPLRTNCPLLPIHPEEDCN*TQVKID
Trigger: ATCTATTTTTACTTGGGTCAAGTTGCAATCCTCCTC...AGGGTGTATGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCTTTTATGTTCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3
CDS-3UTR CAA 90 bp CATAAAAGCCCACTTAGAACTAACTGCCCTCTACTTCCCATACACCCTAGAGATGAGGAGGATTGCAACTaGACCCAAGTAAAAATAGAT +
Preference number: 5 (lower is better)
Translates to: HKSPLRTNCPLLPIHPRDEEDCN*TQVKID
Trigger: ATCTATTTTTACTTGGGTCAAGTTGCAATCCTCCTC...ATCTCTAGGGTGTATGGGAAGTAGAGGGCAGTTAGTTCTAAGTGGGCTTTTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020775.9
ENSMUST00000107923.10
ENSMUST00000178105.3