RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DYNC2LI1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024253

Ensembl transcript IDs: ENSMUST00000025101.10

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp GTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCCACAGCTCCATAGGTaGGTGGGCCTGAAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: VATEGKKIIFLDWEGSHAPQLHR*VGLKFS
Trigger: GGAAAACTTCAGGCCCACTCACCTATGGAGCTGTGG...GGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR GCA 90 bp CATGTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATTCCGGATGGTCCTTCTaGACCACGCTCCACATTCGT +
Preference number: 4 (lower is better)
Translates to: HVATEGKKIIFLDWEGSHSGWSF*TTLHIR
Trigger: ACGAATGTGGAGCGTGGTGCAGAAGGACCATCCGGA...ATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR TCA 90 bp GTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCATAGGTGAGTGGGCCTaGAGTTTTCCAATGTCACTG +
Preference number: 4 (lower is better)
Translates to: VATEGKKIIFLDWEGSHAIGEWA*SFPMSL
Trigger: CAGTGACATTGGAAAACTTCAGGCCCACTCACCTAT...GGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR GCA 90 bp GAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCACAGCAGGCTCTACCTCAGCTTTTaGGATTTCCCAGAGAGTTTC +
Preference number: 4 (lower is better)
Translates to: EGKKIIFLDWEGSHAHSRLYLSF*DFPESF
Trigger: GAAACTCTCTGGGAAATCGCAAAAGCTGAGGTAGAG...CCTGCTGTGGGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR GCA 90 bp CATGTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATCCTTGGAGCTTGTCTTaGCCAGCTTCATTATCACCT +
Preference number: 4 (lower is better)
Translates to: HVATEGKKIIFLDWEGSHPWSLS*PASLSP
Trigger: AGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGG...ATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR GCA 90 bp GTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCTGGCTTTTTGTGGCTTaGAACAGATTTTCCATGGTT +
Preference number: 4 (lower is better)
Translates to: VATEGKKIIFLDWEGSHAWLFVA*NRFSMV
Trigger: AACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCA...GGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CCA 90 bp GCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCACTGCTGTGATAAACAGTaGCTTATTTTGATCCACACA +
Preference number: 4 (lower is better)
Translates to: ATEGKKIIFLDWEGSHAHCCDKQ*LILIHT
Trigger: TGTGTGGATCAAAATAAGCCACTGTTTATCACAGCA...GTGGGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR TCA 90 bp GTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCAGATTTTCCATGGTTaGCCAAAGATCATTAGGTTT +
Preference number: 4 (lower is better)
Translates to: VATEGKKIIFLDWEGSHAQIFHG*PKIIRF
Trigger: AAACCTAATGATCTTTGGTCAACCATGGAAAATCTG...GGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CCA 90 bp CATGTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATATCACCTTGTCTACATaGCTTTTTGTGGCTTGCAAC +
Preference number: 4 (lower is better)
Translates to: HVATEGKKIIFLDWEGSHITLST*LFVACN
Trigger: GTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGAT...ATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAACATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CCA 90 bp CATGTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATCTACATGGCTTTTTGTaGCTTGCAACAGATTTTCCA +
Preference number: 4 (lower is better)
Translates to: HVATEGKKIIFLDWEGSHLHGFL*LATDFP
Trigger: TGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAG...ATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR GCA 90 bp CATGTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATTTTATCAATACCGAATaGCAACTGGTTGATAACACC +
Preference number: 4 (lower is better)
Translates to: HVATEGKKIIFLDWEGSHFINTE*QLVDNT
Trigger: GGTGTTATCAACCAGTTGGCATTCGGTATTGATAAA...ATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAACATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS GCA 90 bp AATTCCCGGTCCGGATGGTCCTTCTGCACCACGCTCCACATTCGTTaGCGCATCTCGGCCGAAGCCTTGGAGCTTGTCTTGCCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: NSRSGWSFCTTLHIR*RISAEALELVLPSF
Trigger: GAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGTGGTGCAGAAGGACCATCCGGACCGGGAATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 90 bp TCATCGACTTCGCTTTCTGCATACTGCGGGTCTCGGGCTGGGTCCTaGACCGCCTTCAGGGTGCCGGTACTCTTTGGTGGGAAGAGCTTG +
Preference number: 5 (lower is better)
Translates to: SSTSLSAYCGSRAGS*TAFRVPVLFGGKSL
Trigger: CAAGCTCTTCCCACCAAAGAGTACCGGCACCCTGAAGGCGGTCCAGGACCCAGCCCGAGACCCGCAGTATGCAGAAAGCGAAGTCGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 90 bp CCTCATCTCATCGACTTCGCTTTCTGCATACTGCGGGTCTCGGGCTaGGTCCTGGACCGCCTTCAGGGTGCCGGTACTCTTTGGTGGGAA +
Preference number: 5 (lower is better)
Translates to: PHLIDFAFCILRVSG*VLDRLQGAGTLWWE
Trigger: TTCCCACCAAAGAGTACCGGCACCCTGAAGGCGGTCCAGGACCCAGCCCGAGACCCGCAGTATGCAGAAAGCGAAGTCGATGAGATGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 90 bp GTCTCGGGCTGGGTCCTGGACCGCCTTCAGGGTGCCGGTACTCTTTaGTGGGAAGAGCTTGTCATACACCTTTTTCCACAGCTCCATAGG +
Preference number: 5 (lower is better)
Translates to: VSGWVLDRLQGAGTL*WEELVIHLFPQLHR
Trigger: CCTATGGAGCTGTGGAAAAAGGTGTATGACAAGCTCTTCCCACCAAAGAGTACCGGCACCCTGAAGGCGGTCCAGGACCCAGCCCGAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS GCA 90 bp GGTATTGGAAATGGGTCAATTAATTCCCGGTCCGGATGGTCCTTCTaGACCACGCTCCACATTCGTTGCCGCATCTCGGCCGAAGCCTTG +
Preference number: 5 (lower is better)
Translates to: GIGNGSINSRSGWSF*TTLHIRCRISAEAL
Trigger: CAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGTGGTGCAGAAGGACCATCCGGACCGGGAATTAATTGACCCATTTCCAATACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 90 bp TCTGCACCACGCTCCACATTCGTTGCCGCATCTCGGCCGAAGCCTTaGAGCTTGTCTTGCCCAGCTTCATTATCACCTTGTCTACATGGC +
Preference number: 5 (lower is better)
Translates to: SAPRSTFVAASRPKP*SLSCPASLSPCLHG
Trigger: GCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGTGGTGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 90 bp ATGACCAGAGGTATTGGAAATGGGTCAATTAATTCCCGGTCCGGATaGTCCTTCTGCACCACGCTCCACATTCGTTGCCGCATCTCGGCC +
Preference number: 5 (lower is better)
Translates to: MTRGIGNGSINSRSG*SFCTTLHIRCRISA
Trigger: GGCCGAGATGCGGCAACGAATGTGGAGCGTGGTGCAGAAGGACCATCCGGACCGGGAATTAATTGACCCATTTCCAATACCTCTGGTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp GAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCACAGCAGGATCTCGGCCGAAGCCTaGGAGCTTGTCTTGCCCAGC +
Preference number: 5 (lower is better)
Translates to: EGKKIIFLDWEGSHAHSRISAEA*ELVLPS
Trigger: GCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGAT...CCTGCTGTGGGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS GCA 90 bp TCCACATTCGTTGCCGCATCTCGGCCGAAGCCTTGGAGCTTGTCTTaGCCAGCTTCATTATCACCTTGTCTACATGGCTTTTTGTGGCTT +
Preference number: 5 (lower is better)
Translates to: STFVAASRPKPWSLS*PASLSPCLHGFLWL
Trigger: AAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp GCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCACGGGTGCCGGTACTCTTaGGTGGGAAGAGCTTGTCAT +
Preference number: 5 (lower is better)
Translates to: ATEGKKIIFLDWEGSHAHGCRYS*VGRACH
Trigger: ATGACAAGCTCTTCCCACCAAAGAGTACCGGCACCC...GTGGGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS TCA 90 bp TGGTGGGAAGAGCTTGTCATACACCTTTTTCCACAGCTCCATAGGTaGGTGGGCCTGAAGTTTTCCAATGTCACTGTCAGGAACAGGAGG +
Preference number: 5 (lower is better)
Translates to: WWEELVIHLFPQLHR*VGLKFSNVTVRNRR
Trigger: CCTCCTGTTCCTGACAGTGACATTGGAAAACTTCAGGCCCACTCACCTATGGAGCTGTGGAAAAAGGTGTATGACAAGCTCTTCCCACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp CATGTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGGCGTGTTGTGCCCCTaGGTCTTCCTTCCGTACGTG +
Preference number: 5 (lower is better)
Translates to: HVATEGKKIIFLDWEGSHGVLCP*VFLPYV
Trigger: CACGTACGGAAGGAAGACCAAGGGGCACAACACGCC...ATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS TCA 90 bp AGCTTGTCATACACCTTTTTCCACAGCTCCATAGGTGAGTGGGCCTaGAGTTTTCCAATGTCACTGTCAGGAACAGGAGGAGACCCTATC +
Preference number: 5 (lower is better)
Translates to: SLSYTFFHSSIGEWA*SFPMSLSGTGGDPI
Trigger: GATAGGGTCTCCTCCTGTTCCTGACAGTGACATTGGAAAACTTCAGGCCCACTCACCTATGGAGCTGTGGAAAAAGGTGTATGACAAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp GTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCCGAATGCCAACTGGTaGATAACACCGCGTATCTTC +
Preference number: 5 (lower is better)
Translates to: VATEGKKIIFLDWEGSHAPNANW*ITPRIF
Trigger: GAAGATACGCGGTGTTATCAACCAGTTGGCATTCGG...GGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp GTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCAACAGAGCTTCTGACTaGCTGGTAAACATCAGCGAG +
Preference number: 5 (lower is better)
Translates to: VATEGKKIIFLDWEGSHANRASD*LVNISE
Trigger: CTCGCTGATGTTTACCAGCAAGTCAGAAGCTCTGTT...GGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 90 bp GCCTTGGAGCTTGTCTTGCCCAGCTTCATTATCACCTTGTCTACATaGCTTTTTGTGGCTTGCAACAGATTTTCCATGGTTGACCAAAGA +
Preference number: 5 (lower is better)
Translates to: ALELVLPSFIITLST*LFVACNRFSMVDQR
Trigger: TCTTTGGTCAACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp GCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCACATGGCTTTTTGTGGCTaGCAACAGATTTTCCATGGT +
Preference number: 5 (lower is better)
Translates to: ATEGKKIIFLDWEGSHAHMAFCG*QQIFHG
Trigger: ACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCAT...GTGGGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp GAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATGCCCACAGCAGGTGTCTACATGGCTTTTaGTGGCTTGCAACAGATTTT +
Preference number: 5 (lower is better)
Translates to: EGKKIIFLDWEGSHAHSRCLHGF*WLATDF
Trigger: AAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACA...CCTGCTGTGGGCATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS GCA 90 bp TTGCCCAGCTTCATTATCACCTTGTCTACATGGCTTTTTGTGGCTTaGAACAGATTTTCCATGGTTGACCAAAGATCATTAGGTTTGGAA +
Preference number: 5 (lower is better)
Translates to: LPSFIITLSTWLFVA*NRFSMVDQRSLGLE
Trigger: TTCCAAACCTAATGATCTTTGGTCAACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS-3UTR CAA 90 bp CATGTTGCCACAGAAGGTAAGAAAATAATCTTCCTCGATTGGGAAGGAAGCCATAGCTTCATTATCACCTaGTCTACATGGCTTTTTGTG +
Preference number: 5 (lower is better)
Translates to: HVATEGKKIIFLDWEGSHSFIIT*STWLFV
Trigger: CACAAAAAGCCATGTAGACAAGGTGATAATGAAGCT...ATGGCTTCCTTCCCAATCGAGGAAGATTATTTTCTTACCTTCTGTGGCAACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS GCA 72 bp TCCGGATGGTCCTTCTGCACCACGCTCCACATTCGTTaGCGCATCTCGGCCGAAGCCTTGGAGCTTGTCTTG +
Preference number: 6 (lower is better)
Translates to: SGWSFCTTLHIR*RISAEALELVL
Trigger: CAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGTGGTGCAGAAGGACCATCCGGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS GCA 72 bp GTCCTTCTGAACCCTCATCTCATCGACTTCGCTTTCTaGATACTGCGGGTCTCGGGCTGGGTCCTGGACCGC +
Preference number: 6 (lower is better)
Translates to: VLLNPHLIDFAF*ILRVSGWVLDR
Trigger: GCGGTCCAGGACCCAGCCCGAGACCCGCAGTATGCAGAAAGCGAAGTCGATGAGATGAGGGTTCAGAAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp GTCCGGATGGTCCTTCTGCACCACGCTCCACATTCGTaGCCGCATCTCGGCCGAAGCCTTGGAGCTTGTCTT +
Preference number: 6 (lower is better)
Translates to: VRMVLLHHAPHS*PHLGRSLGACL
Trigger: AAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGTGGTGCAGAAGGACCATCCGGAC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 72 bp CGCTCCACATTCGTTGCCGCATCTCGGCCGAAGCCTTaGAGCTTGTCTTGCCCAGCTTCATTATCACCTTGT +
Preference number: 6 (lower is better)
Translates to: RSTFVAASRPKP*SLSCPASLSPC
Trigger: ACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 72 bp GTCCTGGACCGCCTTCAGGGTGCCGGTACTCTTTGGTaGGAAGAGCTTGTCATACACCTTTTTCCACAGCTC +
Preference number: 6 (lower is better)
Translates to: VLDRLQGAGTLW*EELVIHLFPQL
Trigger: GAGCTGTGGAAAAAGGTGTATGACAAGCTCTTCCCACCAAAGAGTACCGGCACCCTGAAGGCGGTCCAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 72 bp TGGGTCCTGGACCGCCTTCAGGGTGCCGGTACTCTTTaGTGGGAAGAGCTTGTCATACACCTTTTTCCACAG +
Preference number: 6 (lower is better)
Translates to: WVLDRLQGAGTL*WEELVIHLFPQ
Trigger: CTGTGGAAAAAGGTGTATGACAAGCTCTTCCCACCAAAGAGTACCGGCACCCTGAAGGCGGTCCAGGACCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp ACGCTCCACATTCGTTGCCGCATCTCGGCCGAAGCCTaGGAGCTTGTCTTGCCCAGCTTCATTATCACCTTG +
Preference number: 6 (lower is better)
Translates to: TLHIRCRISAEA*ELVLPSFIITL
Trigger: CAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp CTGGGTCCTGGACCGCCTTCAGGGTGCCGGTACTCTTaGGTGGGAAGAGCTTGTCATACACCTTTTTCCACA +
Preference number: 6 (lower is better)
Translates to: LGPGPPSGCRYS*VGRACHTPFST
Trigger: TGTGGAAAAAGGTGTATGACAAGCTCTTCCCACCAAAGAGTACCGGCACCCTGAAGGCGGTCCAGGACCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 90 bp TTCTGCACCACGCTCCACATTCGTTGCCGCATCTCGGCCGAAGCCTaGGAGCTTGTCTTGCCCAGCTTCATTATCACCTTGTCTACATGG +
Preference number: 6 (lower is better)
Translates to: FCTTLHIRCRISAEA*ELVLPSFIITLSTW
Trigger: CCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGTGGTGCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 72 bp GGTATTGGAAATGGGTCAATTAATTCCCGGTCCGGATaGTCCTTCTGCACCACGCTCCACATTCGTTGCCGC +
Preference number: 6 (lower is better)
Translates to: GIGNGSINSRSG*SFCTTLHIRCR
Trigger: GCGGCAACGAATGTGGAGCGTGGTGCAGAAGGACCATCCGGACCGGGAATTAATTGACCCATTTCCAATACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp CGTTGCCGCATCTCGGCCGAAGCCTTGGAGCTTGTCTaGCCCAGCTTCATTATCACCTTGTCTACATGGCTT +
Preference number: 6 (lower is better)
Translates to: RCRISAEALELV*PSFIITLSTWL
Trigger: AAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 90 bp GCAAGGAGGTTCCTCCACCCAGTTCCCAAAAGTGAGCAATGTCTTTaGGCGTGTTGTGCCCCTTGGTCTTCCTTCCGTACGTGTACTCCA +
Preference number: 6 (lower is better)
Translates to: ARRFLHPVPKSEQCL*ACCAPWSSFRTCTP
Trigger: TGGAGTACACGTACGGAAGGAAGACCAAGGGGCACAACACGCCAAAAGACATTGCTCACTTTTGGGAACTGGGTGGAGGAACCTCCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 90 bp CCACGCTCCACATTCGTTGCCGCATCTCGGCCGAAGCCTTGGAGCTaGTCTTGCCCAGCTTCATTATCACCTTGTCTACATGGCTTTTTG +
Preference number: 6 (lower is better)
Translates to: PRSTFVAASRPKPWS*SCPASLSPCLHGFL
Trigger: CAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAGCGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp TTCCTCCACCCAGTTCCCAAAAGTGAGCAATGTCTTTaGGCGTGTTGTGCCCCTTGGTCTTCCTTCCGTACG +
Preference number: 6 (lower is better)
Translates to: FLHPVPKSEQCL*ACCAPWSSFRT
Trigger: CGTACGGAAGGAAGACCAAGGGGCACAACACGCCAAAAGACATTGCTCACTTTTGGGAACTGGGTGGAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp GCCTTCAGGGTGCCGGTACTCTTTGGTGGGAAGAGCTaGTCATACACCTTTTTCCACAGCTCCATAGGTGAG +
Preference number: 6 (lower is better)
Translates to: AFRVPVLFGGKS*SYTFFHSSIGE
Trigger: CTCACCTATGGAGCTGTGGAAAAAGGTGTATGACAAGCTCTTCCCACCAAAGAGTACCGGCACCCTGAAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 90 bp CTCCACATTCGTTGCCGCATCTCGGCCGAAGCCTTGGAGCTTGTCTaGCCCAGCTTCATTATCACCTTGTCTACATGGCTTTTTGTGGCT +
Preference number: 6 (lower is better)
Translates to: LHIRCRISAEALELV*PSFIITLSTWLFVA
Trigger: AGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGTGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp ACATTCGTTGCCGCATCTCGGCCGAAGCCTTGGAGCTaGTCTTGCCCAGCTTCATTATCACCTTGTCTACAT +
Preference number: 6 (lower is better)
Translates to: TFVAASRPKPWS*SCPASLSPCLH
Trigger: ATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGAGATGCGGCAACGAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 90 bp TCGGCCGAAGCCTTGGAGCTTGTCTTGCCCAGCTTCATTATCACCTaGTCTACATGGCTTTTTGTGGCTTGCAACAGATTTTCCATGGTT +
Preference number: 6 (lower is better)
Translates to: SAEALELVLPSFIIT*STWLFVACNRFSMV
Trigger: AACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGCTTCGGCCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp GCCTTGGAGCTTGTCTTGCCCAGCTTCATTATCACCTaGTCTACATGGCTTTTTGTGGCTTGCAACAGATTT +
Preference number: 6 (lower is better)
Translates to: ALELVLPSFIIT*STWLFVACNRF
Trigger: AAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAGCTCCAAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 72 bp CTTGTCTTGCCCAGCTTCATTATCACCTTGTCTACATaGCTTTTTGTGGCTTGCAACAGATTTTCCATGGTT +
Preference number: 6 (lower is better)
Translates to: LVLPSFIITLST*LFVACNRFSMV
Trigger: AACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCAAGACAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 72 bp TGCCCAGCTTCATTATCACCTTGTCTACATGGCTTTTaGTGGCTTGCAACAGATTTTCCATGGTTGACCAAA +
Preference number: 6 (lower is better)
Translates to: CPASLSPCLHGF*WLATDFPWLTK
Trigger: TTTGGTCAACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CCA 72 bp CCAGCTTCATTATCACCTTGTCTACATGGCTTTTTGTaGCTTGCAACAGATTTTCCATGGTTGACCAAAGAT +
Preference number: 6 (lower is better)
Translates to: PASLSPCLHGFL*LATDFPWLTKD
Trigger: ATCTTTGGTCAACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAAGCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS CAA 90 bp TCCACACATATTGATTTGCTTTTATCAATACCGAATGCCAACTGGTaGATAACACCGCGTATCTTCAGTAACAGAGCTTCTGACTTGCTG +
Preference number: 6 (lower is better)
Translates to: STHIDLLLSIPNANW*ITPRIFSNRASDLL
Trigger: CAGCAAGTCAGAAGCTCTGTTACTGAAGATACGCGGTGTTATCAACCAGTTGGCATTCGGTATTGATAAAAGCAAATCAATATGTGTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS TCA 72 bp GAATCCAGTCCTGCTGTGATAAACAGTGGCTTATTTTaGTCCACACATATTGATTTGCTTTTATCAATACCG +
Preference number: 6 (lower is better)
Translates to: ESSPAVINSGLF*STHIDLLLSIP
Trigger: CGGTATTGATAAAAGCAAATCAATATGTGTGGATCAAAATAAGCCACTGTTTATCACAGCAGGACTGGATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10
CDS GCA 72 bp TTCATTATCACCTTGTCTACATGGCTTTTTGTGGCTTaGAACAGATTTTCCATGGTTGACCAAAGATCATTA +
Preference number: 6 (lower is better)
Translates to: FIITLSTWLFVA*NRFSMVDQRSL
Trigger: TAATGATCTTTGGTCAACCATGGAAAATCTGTTGCAAGCCACAAAAAGCCATGTAGACAAGGTGATAATGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025101.10