RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DYNC1LI2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035770

Ensembl transcript IDs: ENSMUST00000041769.8, ENSMUST00000212148.2, ENSMUST00000212230.2, ENSMUST00000212654.2

Found 237 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGGGACATGGCCTGGGTCAAGCATGTGGGTCCCGGGGGCAGCTGTaGTCTTCACCAGCCCTGAGTCAGCCCACCTTACTCAGCACCCTA +
Preference number: 1 (lower is better)
Translates to: KGHGLGQACGSRGQL*SSPALSQPTLLSTL
Trigger: TAGGGTGCTGAGTAAGGTGGGCTGACTCAGGGCTGGTGAAGACCACAGCTGCCCCCGGGACCCACATGCTTGACCCAGGCCATGTCCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CCA 90 bp ATCTGCATAGAGCCCGACATCTCTCCAAGGACAAGGGACATGGCCTaGGTCAAGCATGTGGGTCCCGGGGGCAGCTGTGGTCTTCACCAG +
Preference number: 1 (lower is better)
Translates to: ICIEPDISPRTRDMA*VKHVGPGGSCGLHQ
Trigger: CTGGTGAAGACCACAGCTGCCCCCGGGACCCACATGCTTGACCCAGGCCATGTCCCTTGTCCTTGGAGAGATGTCGGGCTCTATGCAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR GCA 90 bp TGTTGCTATCTGGTTTCTACCGAGCTTGTACTTACTAACACTGCCTaGCCGCTCACTCGCTTCCTTCCTCCACCTCCCTCAACCTTCGGC +
Preference number: 1 (lower is better)
Translates to: CCYLVSTELVLTNTA*PLTRFLPPPPSTFG
Trigger: GCCGAAGGTTGAGGGAGGTGGAGGAAGGAAGCGAGTGAGCGGGCAGGCAGTGTTAGTAAGTACAAGCTCGGTAGAAACCAGATAGCAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CCA 90 bp CGCAGCCCAAGAGTCCAAGGGACATCCCTAAGAAGGGGCCTGACATaGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAA +
Preference number: 1 (lower is better)
Translates to: RSPRVQGTSLRRGLT*SLLNVHLTLGQAKE
Trigger: TTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGTCAGGCCCCTTCTTAGGGATGTCCCTTGGACTCTTGGGCTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR TCA 90 bp CTGAAGCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATaGCAACACGCATCAGTTTCTTCTGAAACTAGGCGCATCCAAGTA +
Preference number: 1 (lower is better)
Translates to: LKLRKAGGLWQLLST*QHASVSSETRRIQV
Trigger: TACTTGGATGCGCCTAGTTTCAGAAGAAACTGATGCGTGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCGGAGCTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR GCA 90 bp GGTCAAACTAACCATCCATCTGAACAATGCCTTCCTAGTCTCCTTTaGTCCACCCTGATAGAAAGTGGGCCTCCTTTCTCCACTCTACAA +
Preference number: 1 (lower is better)
Translates to: GQTNHPSEQCLPSLL*STLIESGPPFSTLQ
Trigger: TTGTAGAGTGGAGAAAGGAGGCCCACTTTCTATCAGGGTGGAGCAAAGGAGACTAGGAAGGCATTGTTCAGATGGATGGTTAGTTTGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR GCA 90 bp TCCCTCCGGAACCTTTCTCTTTCCTGGACTGTCAGCTACTTAACCTaGTTCCCAAGAACAAGTGAATTTGCTAACACGCAACTGGTCAAA +
Preference number: 1 (lower is better)
Translates to: SLRNLSLSWTVSYLT*FPRTSEFANTQLVK
Trigger: TTTGACCAGTTGCGTGTTAGCAAATTCACTTGTTCTTGGGAAGCAGGTTAAGTAGCTGACAGTCCAGGAAAGAGAAAGGTTCCGGAGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CCA 90 bp ACTCAAAGTGCCATTTCAAATCCACAGAAGTTATCTTCAGCATGGTaGTGTGACATGACAGTGTTCATGAACATGCCCCTGATGGAAGAC +
Preference number: 1 (lower is better)
Translates to: TQSAISNPQKLSSAW*CDMTVFMNMPLMED
Trigger: GTCTTCCATCAGGGGCATGTTCATGAACACTGTCATGTCACACCACCATGCTGAAGATAACTTCTGTGGATTTGAAATGGCACTTTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CCA 90 bp GAAACTCAAAGTGCCATTTCAAATCCACAGAAGTTATCTTCAGCATaGTGGTGTGACATGACAGTGTTCATGAACATGCCCCTGATGGAA +
Preference number: 1 (lower is better)
Translates to: ETQSAISNPQKLSSA*WCDMTVFMNMPLME
Trigger: TTCCATCAGGGGCATGTTCATGAACACTGTCATGTCACACCACCATGCTGAAGATAACTTCTGTGGATTTGAAATGGCACTTTGAGTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR TCA 90 bp TTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTaGAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCATTCTATC +
Preference number: 1 (lower is better)
Translates to: FDRCTFKGGSGFIFC*RVCYHGVWLSSHSI
Trigger: GATAGAATGACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR TCA 90 bp AAATCCTGGTCTTATCAGATGAATATACATAGTTATTTGGTCATTTaGCAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTG +
Preference number: 1 (lower is better)
Translates to: KSWSYQMNIHSYLVI*QMHFQRRVRLHFLL
Trigger: CAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATGACCAAATAACTATGTATATTCATCTGATAAGACCAGGATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR-3UTR GCA 90 bp CCCGACATCTCTCCAAGGACAAGGGACATGGCCTGGGTCAAGCATGTGGGTCCCCTTCCTAGTCTCCTTTaGTCCACCCTGATAGAAAGT +
Preference number: 2 (lower is better)
Translates to: PDISPRTRDMAWVKHVGPLPSLL*STLIES
Trigger: ACTTTCTATCAGGGTGGAGCAAAGGAGACTAGGAAG...GGGACCCACATGCTTGACCCAGGCCATGTCCCTTGTCCTTGGAGAGATGTCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CAA 90 bp ATAGAAAGTGGGCCTCCTTTCTCCACTCTACAAGGCCAGCTGCACTaGCTTCCCACAAGAGAATCGCAGCCCAAGAGTCCAAGGGACATC +
Preference number: 2 (lower is better)
Translates to: IESGPPFSTLQGQLH*LPTRESQPKSPRDI
Trigger: GATGTCCCTTGGACTCTTGGGCTGCGATTCTCTTGTGGGAAGCAAGTGCAGCTGGCCTTGTAGAGTGGAGAAAGGAGGCCCACTTTCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR-3UTR CCA 90 bp CAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCAGCATTCACGGAAGTGAACTGTaGTTTTCCCCTTGGTTTGGA +
Preference number: 2 (lower is better)
Translates to: QRNNTMVSKPPSHSDLSIHGSEL*FSPWFG
Trigger: TCCAAACCAAGGGGAAAACCACAGTTCACTTCCGTG...AATGCTGAGGTCGGAGTGGGAGGGAGGCTTGGAGACCATTGTGTTATTCCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR-3UTR GCA 90 bp CAGAGCAGTCGCTCTCACCCTCATCAAGACAACAGTCTCTTCAGTTTAAACACTCTCTACAAGGCCAGCTaGACTTGCTTCCCACAAGAG +
Preference number: 2 (lower is better)
Translates to: QSSRSHPHQDNSLFSLNTLYKAS*TCFPQE
Trigger: CTCTTGTGGGAAGCAAGTGCAGCTGGCCTTGTAGAG...AGTGTTTAAACTGAAGAGACTGTTGTCTTGATGAGGGTGAGAGCGACTGCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR-3UTR GCA 90 bp GCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATGACAACACGCATCTTAGGTCTTAACTGTTaGTATCTGGTTTCTACCGAG +
Preference number: 2 (lower is better)
Translates to: APQSWWTLATTEHMTTRILGLNC*YLVSTE
Trigger: CTCGGTAGAAACCAGATAGCAACAGTTAAGACCTAA...GATGCGTGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCGGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR-3UTR CCA 90 bp TCTTACCAGAACCATCTTCACCTGTTAAGGTCTCTCTCACTCGCTCTCATCAACACAGCCAACCCAAGATaGCAAATGACCTTCTGCTGC +
Preference number: 2 (lower is better)
Translates to: SYQNHLHLLRSLSLALINTANPR*QMTFCC
Trigger: GCAGCAGAAGGTCATTTGCCATCTTGGGTTGGCTGT...GTTGATGAGAGCGAGTGAGAGAGACCTTAACAGGTGAAGATGGTTCTGGTAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
3UTR-3UTR GCA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCCCAAGCAGTCCATCCTaGACAATGTTGGTGCTCCTA +
Preference number: 2 (lower is better)
Translates to: DALSKEGQASFSVEEFVTPSSPS*TMLVLL
Trigger: TAGGAGCACCAACATTGTGCAGGATGGACTGCTTGG...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR-3UTR CCA 90 bp CAGAGCAGTCGCTCTCACCCTCATCAAGACAACAGTCTCTTCAGTTTAAACACTAAGTGCTACGTTTCATaGAAAGCACAAGCCTACCAC +
Preference number: 2 (lower is better)
Translates to: QSSRSHPHQDNSLFSLNTKCYVS*KAQAYH
Trigger: GTGGTAGGCTTGTGCTTTCCATGAAACGTAGCACTT...AGTGTTTAAACTGAAGAGACTGTTGTCTTGATGAGGGTGAGAGCGACTGCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR-3UTR CCA 90 bp AGTTTGGTCATGAGAGTTGTCTTACCAGAACCATCTTCACCTGTTAAGGTCTCTGCTTTTAAGAGTGACTaGCAGAGACAGCCAACCCAA +
Preference number: 2 (lower is better)
Translates to: SLVMRVVLPEPSSPVKVSAFKSD*QRQPTQ
Trigger: TTGGGTTGGCTGTCTCTGCCAGTCACTCTTAAAAGC...AGAGACCTTAACAGGTGAAGATGGTTCTGGTAAGACAACTCTCATGACCAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
3UTR-3UTR GCA 90 bp TGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTAAAAACTGACAGCATGTaGCGAATCAGAAAAATCCTG +
Preference number: 2 (lower is better)
Translates to: WSLLNVHLTLGQAKEVYVKTDSM*RIRKIL
Trigger: CAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT...TACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
3UTR-3UTR GCA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATAAAACTGACAGCATGTaGCGAATCAGAAAAATCCTG +
Preference number: 2 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYKTDSM*RIRKIL
Trigger: CAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
3UTR-3UTR TCA 90 bp AGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCTTCTTCCTGAACATTTaGCAACACAGTCTTTTGTCA +
Preference number: 2 (lower is better)
Translates to: RVRLHFLLKSLLPWSLAFFFLNI*QHSLLS
Trigger: TGACAAAAGACTGTGTTGTCAAATGTTCAGGAAGAA...GAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR-3UTR CCA 90 bp TTTGGTCATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTTGTTACCATGGAGTCTaGCTTTCGAGTCATTCTATC +
Preference number: 2 (lower is better)
Translates to: FGHLTDALSKEGQASFSVCYHGV*LSSHSI
Trigger: GATAGAATGACTCGAAAGCCAGACTCCATGGTAACA...AACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATGACCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR CCA 72 bp CTCCAAGGACAAGGGACATGGCCTGGGTCAAGCATGTaGGTCCCGGGGGCAGCTGTGGTCTTCACCAGCCCT +
Preference number: 3 (lower is better)
Translates to: LQGQGTWPGSSM*VPGAAVVFTSP
Trigger: AGGGCTGGTGAAGACCACAGCTGCCCCCGGGACCCACATGCTTGACCCAGGCCATGTCCCTTGTCCTTGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR GCA 72 bp GGCCTCCTTTCTCCACTCTACAAGGCCAGCTGCACTTaGTTCCCACAAGAGAATCGCAGCCCAAGAGTCCAA +
Preference number: 3 (lower is better)
Translates to: GLLSPLYKASCT*FPQENRSPRVQ
Trigger: TTGGACTCTTGGGCTGCGATTCTCTTGTGGGAAGCAAGTGCAGCTGGCCTTGTAGAGTGGAGAAAGGAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR GCA 72 bp CTGGTTTCTACCGAGCTTGTACTTACTAACACTGCCTaGCCGCTCACTCGCTTCCTTCCTCCACCTCCCTCA +
Preference number: 3 (lower is better)
Translates to: LVSTELVLTNTA*PLTRFLPPPPS
Trigger: TGAGGGAGGTGGAGGAAGGAAGCGAGTGAGCGGGCAGGCAGTGTTAGTAAGTACAAGCTCGGTAGAAACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CCA 72 bp AGAGTCCAAGGGACATCCCTAAGAAGGGGCCTGACATaGAGCCTCCTAAATGTGCATCTCACACTCGGACAA +
Preference number: 3 (lower is better)
Translates to: RVQGTSLRRGLT*SLLNVHLTLGQ
Trigger: TTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGTCAGGCCCCTTCTTAGGGATGTCCCTTGGACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR TCA 72 bp CGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATaGCAACACGCATCAGTTTCTTCTGAAACTAGGCGC +
Preference number: 3 (lower is better)
Translates to: RKAGGLWQLLST*QHASVSSETRR
Trigger: GCGCCTAGTTTCAGAAGAAACTGATGCGTGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR GCA 72 bp AACCATCCATCTGAACAATGCCTTCCTAGTCTCCTTTaGTCCACCCTGATAGAAAGTGGGCCTCCTTTCTCC +
Preference number: 3 (lower is better)
Translates to: NHPSEQCLPSLL*STLIESGPPFS
Trigger: GGAGAAAGGAGGCCCACTTTCTATCAGGGTGGAGCAAAGGAGACTAGGAAGGCATTGTTCAGATGGATGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CCA 72 bp CATGGTTTCCACTCCAGCCAGTTTGCTGTCATCGCCTaGACAACCTGGTCATTTGAAGCCACAATGCATGTT +
Preference number: 3 (lower is better)
Translates to: HGFHSSQFAVIA*TTWSFEATMHV
Trigger: AACATGCATTGTGGCTTCAAATGACCAGGTTGTCCAGGCGATGACAGCAAACTGGCTGGAGTGGAAACCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR TCA 72 bp CGACCTCAGCATTTCCTCAGTTGGTTAGAGCACACTTaGCATCAACACAAAAAGTGCCTACCCGTTCCAGTG +
Preference number: 3 (lower is better)
Translates to: RPQHFLSWLEHT*HQHKKCLPVPV
Trigger: CACTGGAACGGGTAGGCACTTTTTGTGTTGATGTCAAGTGTGCTCTAACCAACTGAGGAAATGCTGAGGTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR-3UTR CAA 90 bp AGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTCCATCCTGCACAATGTaGGTGCTCCTATTTCCTGTT +
Preference number: 3 (lower is better)
Translates to: RRVRLHFLLKSLLPWSLAPSCTM*VLLFPV
Trigger: AACAGGAAATAGGAGCACCAACATTGTGCAGGATGG...AGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR TCA 72 bp TGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTaGAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGT +
Preference number: 3 (lower is better)
Translates to: CTFKGGSGFIFC*RVCYHGVWLSS
Trigger: ACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR CCA 72 bp AGTGCCATTTCAAATCCACAGAAGTTATCTTCAGCATaGTGGTGTGACATGACAGTGTTCATGAACATGCCC +
Preference number: 3 (lower is better)
Translates to: SAISNPQKLSSA*WCDMTVFMNMP
Trigger: GGGCATGTTCATGAACACTGTCATGTCACACCACCATGCTGAAGATAACTTCTGTGGATTTGAAATGGCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR-3UTR CAA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCGTTCTTCCTGAACATTaGACAACACAGTCTTTTGTC +
Preference number: 3 (lower is better)
Translates to: DALSKEGQASFSVEEFVTVLPEH*TTQSFV
Trigger: GACAAAAGACTGTGTTGTCAAATGTTCAGGAAGAAC...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp CCCGACATCTCTCCAAGGACAAGGGACATGGCCTGGGTCAAGCATGTGGGTCCCTTCTTGGCTGTGCTCTaGACTCCACCAGCACTAGGA +
Preference number: 4 (lower is better)
Translates to: PDISPRTRDMAWVKHVGPFLAVL*TPPALG
Trigger: TCCTAGTGCTGGTGGAGTGCAGAGCACAGCCAAGAA...GGGACCCACATGCTTGACCCAGGCCATGTCCCTTGTCCTTGGAGAGATGTCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp CTTCCCACAAGAGAATCGCAGCCCAAGAGTCCAAGGGACATCCCTAAGAAGGGGGGGATCCCCAGGTTATaGGTCAGCACGTTGTCACCC +
Preference number: 4 (lower is better)
Translates to: LPTRESQPKSPRDIPKKGGIPRL*VSTLSP
Trigger: GGGTGACAACGTGCTGACTCATAACCTGGGGATCCC...CCCCTTCTTAGGGATGTCCCTTGGACTCTTGGGCTGCGATTCTCTTGTGGGAAG
57% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp ACCAGGGAGCTACAGAAAGAACCTTTCTGTATCAGGGAGGGTTACCACAGGCTCCTCCGCAGGTGCGCCTaGATGAAGTCCAGGTGCTCG +
Preference number: 4 (lower is better)
Translates to: TRELQKEPFCIREGYHRLLRRCA*MKSRCS
Trigger: CGAGCACCTGGACTTCATCCAGGCGCACCTGCGGAG...GAGCCTGTGGTAACCCTCCCTGATACAGAAAGGTTCTTTCTGTAGCTCCCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp CAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCAGCATTCCGACCCTGCGTCCTTaGAGAGCCAGAGGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: QRNNTMVSKPPSHSDLSIPTLRP*RARGSS
Trigger: AGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGG...AATGCTGAGGTCGGAGTGGGAGGGAGGCTTGGAGACCATTGTGTTATTCCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp GTCCAAGGGACATCCCTAAGAAGGGGCCTGACATGGAGCCTCCTAAATGTGCATCTCTGTGGGGAACCCTaGCAACCTTCTTCAGGCTCG +
Preference number: 4 (lower is better)
Translates to: VQGTSLRRGLTWSLLNVHLCGEP*QPSSGS
Trigger: CGAGCCTGAAGAAGGTTGTCAGGGTTCCCCACAGAG...ATGCACATTTAGGAGGCTCCATGTCAGGCCCCTTCTTAGGGATGTCCCTTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp GCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATGACAACACGCATCCAGAATCTCCGCAGGTaGGCCTGGATGAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: APQSWWTLATTEHMTTRIQNLRR*AWMKSR
Trigger: CCTGGACTTCATCCAGGCGCACCTGCGGAGATTCTG...GATGCGTGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp TCTACCGAGCTTGTACTTACTAACACTGCCTGCCCGCTCACTCGCTTCCTTCCTAGGTTCTTGTGGGCGTaGCAGGCTGCTTGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: STELVLTNTACPLTRFLPRFLWA*QAAWQG
Trigger: TCCTTGCCAAGCAGCCTGCCACGCCCACAAGAACCT...AGGAAGGAAGCGAGTGAGCGGGCAGGCAGTGTTAGTAAGTACAAGCTCGGTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp CAGCTGCACTTGCTTCCCACAAGAGAATCGCAGCCCAAGAGTCCAAGGGACATCCTGCTCATCCTCCGCTaGCAACTCTTTGTCATGGAC +
Preference number: 4 (lower is better)
Translates to: QLHLLPTRESQPKSPRDILLILR*QLFVMD
Trigger: GTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAG...GATGTCCCTTGGACTCTTGGGCTGCGATTCTCTTGTGGGAAGCAAGTGCAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp ACAGAGCAGTCGCTCTCACCCTCATCAAGACAACAGTCTCTTCAGTTTAAACACGGTCCACCCCGACCCTaGGTCCTTGGAGAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: TEQSLSPSSRQQSLQFKHGPPRP*VLGEPE
Trigger: CTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACC...GTGTTTAAACTGAAGAGACTGTTGTCTTGATGAGGGTGAGAGCGACTGCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp AACTGTTGCTATCTGGTTTCTACCGAGCTTGTACTTACTAACACTGCCTGCCCGACGGCAGCTTGGACCTaGCACGGGTGGACACTTCGC +
Preference number: 4 (lower is better)
Translates to: NCCYLVSTELVLTNTACPTAAWT*HGWTLR
Trigger: GCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGT...CGGGCAGGCAGTGTTAGTAAGTACAAGCTCGGTAGAAACCAGATAGCAACAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp CAGAGCAGTCGCTCTCACCCTCATCAAGACAACAGTCTCTTCAGTTTAAACACTTGCCGGACGGCAGCTTaGACCTGGCACGGGTGGACA +
Preference number: 4 (lower is better)
Translates to: QSSRSHPHQDNSLFSLNTCRTAA*TWHGWT
Trigger: TGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCA...AGTGTTTAAACTGAAGAGACTGTTGTCTTGATGAGGGTGAGAGCGACTGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp GTTGTCTTACCAGAACCATCTTCACCTGTTAAGGTCTCTCTCACTCGCTCTCATTGCCGGACGGCAGCTTaGACCTGGCACGGGTGGACA +
Preference number: 4 (lower is better)
Translates to: VVLPEPSSPVKVSLTRSHCRTAA*TWHGWT
Trigger: TGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCA...ATGAGAGCGAGTGAGAGAGACCTTAACAGGTGAAGATGGTTCTGGTAAGACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR GCA 90 bp TGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTAGGTCCACCCCGACCCTaGGTCCTTGGAGAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: WSLLNVHLTLGQAKEVYVGPPRP*VLGEPE
Trigger: CTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACC...TACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp GCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATGACAACACGCATCGCACACCACCAACACTaGGATCCCCAGGTTATGAGT +
Preference number: 4 (lower is better)
Translates to: APQSWWTLATTEHMTTRIAHHQH*DPQVMS
Trigger: ACTCATAACCTGGGGATCCCAGTGTTGGTGGTGTGC...GATGCGTGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp AGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTCCGACCCTGCGTCCTTaGAGAGCCAGAGGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: RRVRLHFLLKSLLPWSLAPTLRP*RARGSS
Trigger: AGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGG...AGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp CCCGACATCTCTCCAAGGACAAGGGACATGGCCTGGGTCAAGCATGTGGGTCCCTGTTACCATGGAGTCTaGCTTTCGAGTCATTCTATC +
Preference number: 4 (lower is better)
Translates to: PDISPRTRDMAWVKHVGPCYHGV*LSSHSI
Trigger: GATAGAATGACTCGAAAGCCAGACTCCATGGTAACA...GGGACCCACATGCTTGACCCAGGCCATGTCCCTTGTCCTTGGAGAGATGTCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp CTTTTAAGAGTGACTGGCAGAGACAGCCAACCCAAGATGGCAAATGACCTTCTGTGGACCTGGCACGGGTaGACACTTCGCTCAAGATCG +
Preference number: 4 (lower is better)
Translates to: LLRVTGRDSQPKMANDLLWTWHG*TLRSRS
Trigger: CGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCA...CAGAAGGTCATTTGCCATCTTGGGTTGGCTGTCTCTGCCAGTCACTCTTAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR CCA 90 bp TTGGTCATGAGAGTTGTCTTACCAGAACCATCTTCACCTGTTAAGGTCTCTCTCACGGCAGCTTGGACCTaGCACGGGTGGACACTTCGC +
Preference number: 4 (lower is better)
Translates to: LVMRVVLPEPSSPVKVSLTAAWT*HGWTLR
Trigger: GCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGT...GAGAGAGACCTTAACAGGTGAAGATGGTTCTGGTAAGACAACTCTCATGACCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR CCA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCTGCCGGACGGCAGCTTaGACCTGGCACGGGTGGACA +
Preference number: 4 (lower is better)
Translates to: DALSKEGQASFSVEEFVTCRTAA*TWHGWT
Trigger: TGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCA...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATCCGACCCTGCGTCCTTaGAGAGCCAGAGGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYPTLRP*RARGSS
Trigger: AGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGG...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp GTCCAAGGGACATCCCTAAGAAGGGGCCTGACATGGAGCCTCCTAAATGTGCATTTCATTGTCCCAGCCTaGAGGTATAAAAACCGCGTC +
Preference number: 4 (lower is better)
Translates to: VQGTSLRRGLTWSLLNVHFIVPA*RYKNRV
Trigger: GACGCGGTTTTTATACCTGCAGGCTGGGACAATGAA...ATGCACATTTAGGAGGCTCCATGTCAGGCCCCTTCTTAGGGATGTCCCTTGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp CCTGAAGCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATGACAACATTCATTAGGAACACCTaGTCATCCTCCGCTGCCAAC +
Preference number: 4 (lower is better)
Translates to: PEAPQSWWTLATTEHMTTFIRNT*SSSAAN
Trigger: GTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAA...TGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCGGAGCTTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAACCACTGCGGGCCCGTTaGGACCCAGCAGCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: PKTDSMCRIRKILVLSDEPLRAR*DPAAAS
Trigger: AGAAGCTGCTGCTGGGTCCCAACGGGCCCGCAGTGG...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCCTCCGCAGGTGCGCCTaGATGAAGTCCAGGTGCTCG +
Preference number: 4 (lower is better)
Translates to: DALSKEGQASFSVEEFVTLRRCA*MKSRCS
Trigger: CGAGCACCTGGACTTCATCCAGGCGCACCTGCGGAG...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp CCTGAAGCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATGACAACAGCCAACTCTTTGTCATaGACCAGCTTTCTCACAGGC +
Preference number: 4 (lower is better)
Translates to: PEAPQSWWTLATTEHMTTANSLS*TSFLTG
Trigger: GCCTGTGAGAAAGCTGGTCCATGACAAAGAGTTGGC...TGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCGGAGCTTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGGGATCCCCAGGTTATaGGTCAGCACGTTGTCACCC +
Preference number: 4 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYGIPRL*VSTLSP
Trigger: GGGTGACAACGTGCTGACTCATAACCTGGGGATCCC...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp CAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCAGCATTACACTAGCCCACTTCTaGAGAGACTCCATTATCGTC +
Preference number: 4 (lower is better)
Translates to: QRNNTMVSKPPSHSDLSITLAHF*RDSIIV
Trigger: GACGATAATGGAGTCTCTGCAGAAGTGGGCTAGTGT...AATGCTGAGGTCGGAGTGGGAGGGAGGCTTGGAGACCATTGTGTTATTCCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTCAGAATCTCCGCAGGTaGGCCTGGATGAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: MEPPKCASHTRTSQRSICQNLRR*AWMKSR
Trigger: CCTGGACTTCATCCAGGCGCACCTGCGGAGATTCTG...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp CAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCAGCATTTCTCCAAGACGCTCATaGCATCACACTTTGTGCACA +
Preference number: 4 (lower is better)
Translates to: QRNNTMVSKPPSHSDLSISPRRS*HHTLCT
Trigger: TGTGCACAAAGTGTGATGCCATGAGCGTCTTGGAGA...AATGCTGAGGTCGGAGTGGGAGGGAGGCTTGGAGACCATTGTGTTATTCCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAACTCCGCAGGTGCGCCTaGATGAAGTCCAGGTGCTCG +
Preference number: 4 (lower is better)
Translates to: PKTDSMCRIRKILVLSDELRRCA*MKSRCS
Trigger: CGAGCACCTGGACTTCATCCAGGCGCACCTGCGGAG...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGCGTGGCAGGCTGCTTaGCAAGGAGTGACTGTTGCT +
Preference number: 4 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYAWQAA*QGVTVA
Trigger: AGCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGC...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CAA 72 bp AGCCTCCCTCCCACTCCGACCTCAGCATTTCCTCAGTaGGTTAGAGCACACTTGACATCAACACAAAAAGTG +
Preference number: 4 (lower is better)
Translates to: SLPPTPTSAFPQ*VRAHLTSTQKV
Trigger: CACTTTTTGTGTTGATGTCAAGTGTGCTCTAACCAACTGAGGAAATGCTGAGGTCGGAGTGGGAGGGAGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp CAAAGGAATAACACAATGGTCTCCAAGCCTCCCTCCCACTCCGACCTCAGCATTTTTCTCTTCCTTCACTaGGGTGTAAATCAAGGCTGC +
Preference number: 4 (lower is better)
Translates to: QRNNTMVSKPPSHSDLSIFLFLH*GVNQGC
Trigger: GCAGCCTTGATTTACACCTCAGTGAAGGAAGAGAAA...AATGCTGAGGTCGGAGTGGGAGGGAGGCTTGGAGACCATTGTGTTATTCCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp GTTGTCTTACCAGAACCATCTTCACCTGTTAAGGTCTCTCTCACTCGCTCTCATACACCAGAATGTTTTTaGCGGACGGCAGCTTGGACC +
Preference number: 4 (lower is better)
Translates to: VVLPEPSSPVKVSLTRSHTPECF*RTAAWT
Trigger: GGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGT...ATGAGAGCGAGTGAGAGAGACCTTAACAGGTGAAGATGGTTCTGGTAAGACAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR GCA 90 bp TTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGGGGTCCACCCCGACCCTaGGTCCTTGGAGAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: LTTQSFVMEILCLMLKVRGPPRP*VLGEPE
Trigger: CTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACC...CCTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp TTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGGCCACTGCGGGCCCGTTaGGACCCAGCAGCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: LTTQSFVMEILCLMLKVRPLRAR*DPAAAS
Trigger: AGAAGCTGCTGCTGGGTCCCAACGGGCCCGCAGTGG...CCTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp TGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTAAGGCCCTCTTCTCTGTaGGGAACCCTGACAACCTTC +
Preference number: 4 (lower is better)
Translates to: WSLLNVHLTLGQAKEVYVRPSSL*GTLTTF
Trigger: GAAGGTTGTCAGGGTTCCCCACAGAGAAGAGGGCCT...TACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTAGGCCCTCTTCTCTGTaGGGAACCCTGACAACCTTC +
Preference number: 4 (lower is better)
Translates to: MEPPKCASHTRTSQRSICRPSSL*GTLTTF
Trigger: GAAGGTTGTCAGGGTTCCCCACAGAGAAGAGGGCCT...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp AGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCAGGCCCTCTTCTCTGTaGGGAACCCTGACAACCTTC +
Preference number: 4 (lower is better)
Translates to: RVRLHFLLKSLLPWSLAFRPSSL*GTLTTF
Trigger: GAAGGTTGTCAGGGTTCCCCACAGAGAAGAGGGCCT...GAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTAAGGCTGCTCCATACTaGAGGCAGAATCTCCGCAGG +
Preference number: 4 (lower is better)
Translates to: MEPPKCASHTRTSQRSICKAAPY*RQNLRR
Trigger: CCTGCGGAGATTCTGCCTCCAGTATGGAGCAGCCTT...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCGCGTGGCAGGCTGCTTaGCAAGGAGTGACTGTTGCT +
Preference number: 4 (lower is better)
Translates to: DALSKEGQASFSVEEFVTAWQAA*QGVTVA
Trigger: AGCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGC...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp GTCCAAGGGACATCCCTAAGAAGGGGCCTGACATGGAGCCTCCTAAATGTGCATAAGAGTTTGTTACCATaGAGTCTGGCTTTCGAGTCA +
Preference number: 4 (lower is better)
Translates to: VQGTSLRRGLTWSLLNVHKSLLP*SLAFES
Trigger: TGACTCGAAAGCCAGACTCCATGGTAACAAACTCTT...ATGCACATTTAGGAGGCTCCATGTCAGGCCCCTTCTTAGGGATGTCCCTTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
3UTR CAA 72 bp CCGACCTCAGCATTTCCTCAGTTGGTTAGAGCACACTaGACATCAACACAAAAAGTGCCTACCCGTTCCAGT +
Preference number: 4 (lower is better)
Translates to: PTSAFPQLVRAH*TSTQKVPTRSS
Trigger: ACTGGAACGGGTAGGCACTTTTTGTGTTGATGTCAAGTGTGCTCTAACCAACTGAGGAAATGCTGAGGTCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp AGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTCCGCAGAGACTCAGCTaGAACTGCAAATTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: RRVRLHFLLKSLLPWSLAPQRLS*NCKFQQ
Trigger: CTGCTGAAATTTGCAGTTTCAGCTGAGTCTCTGCGG...AGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR TCA 90 bp CATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTGTCGGCAACAAAAATaGCCAGGGTCTCCCGCAGAG +
Preference number: 4 (lower is better)
Translates to: HLTDALSKEGQASFSVEECRQQK*PGSPAE
Trigger: CTCTGCGGGAGACCCTGGTCATTTTTGTTGCCGACA...CTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR TCA 90 bp CCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTGTTCTCTGTGGGGAACCCTaGCAACCTTCTTCAGGCTCG +
Preference number: 4 (lower is better)
Translates to: PPKCASHTRTSQRSICIVLCGEP*QPSSGS
Trigger: CGAGCCTGAAGAAGGTTGTCAGGGTTCCCCACAGAG...AACAATACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp GTCCAAGGGACATCCCTAAGAAGGGGCCTGACATGGAGCCTCCTAAATGTGCATGGCTTCATTTTCTGTTaGAGAGTTTGTTACCATGGA +
Preference number: 4 (lower is better)
Translates to: VQGTSLRRGLTWSLLNVHGFIFC*RVCYHG
Trigger: TCCATGGTAACAAACTCTTCAACAGAAAATGAAGCC...ATGCACATTTAGGAGGCTCCATGTCAGGCCCCTTCTTAGGGATGTCCCTTGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp TTTGGTCATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTCAGAATCTCCGCAGGTaGGCCTGGATGAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: FGHLTDALSKEGQASFSVQNLRR*AWMKSR
Trigger: CCTGGACTTCATCCAGGCGCACCTGCGGAGATTCTG...AACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATGACCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp CTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATACATGTGGGCGTGGCAGGCTaGTTGGCAAGGAGTGACTGT +
Preference number: 4 (lower is better)
Translates to: LTACAESEKSWSYQMNIHVGVAG*LARSDC
Trigger: ACAGTCACTCCTTGCCAAGCAGCCTGCCACGCCCAC...ATGTATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp TCACTCGCTCTCATCAACAAAGGAGACCTGCTTTTAAGAGTGACTGGCAGAGACGAAGACCATAGACTCTaGCCTTCCTCCTCTTCACTT +
Preference number: 4 (lower is better)
Translates to: SLALINKGDLLLRVTGRDEDHRL*PSSSSL
Trigger: AAGTGAAGAGGAGGAAGGCCAGAGTCTATGGTCTTC...GTCTCTGCCAGTCACTCTTAAAAGCAGGTCTCCTTTGTTGATGAGAGCGAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR CCA 90 bp CCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTGTTTGGACCTGGCACGGGTaGACACTTCGCTCAAGATCG +
Preference number: 4 (lower is better)
Translates to: PPKCASHTRTSQRSICIVWTWHG*TLRSRS
Trigger: CGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCA...AACAATACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGCACACCACCAACACTaGGATCCCCAGGTTATGAGT +
Preference number: 4 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYAHHQH*DPQVMS
Trigger: ACTCATAACCTGGGGATCCCAGTGTTGGTGGTGTGC...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp CATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGAAGGCTGCTCCATACTaGAGGCAGAATCTCCGCAGG +
Preference number: 4 (lower is better)
Translates to: HLTDALSKEGQASFSVEEKAAPY*RQNLRR
Trigger: CCTGCGGAGATTCTGCCTCCAGTATGGAGCAGCCTT...CTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR TCA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATGTCGGCAACAAAAATaGCCAGGGTCTCCCGCAGAG +
Preference number: 4 (lower is better)
Translates to: PKTDSMCRIRKILVLSDECRQQK*PGSPAE
Trigger: CTCTGCGGGAGACCCTGGTCATTTTTGTTGCCGACA...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATTTCATTAGGAACACCTaGTCATCCTCCGCTGCCAAC +
Preference number: 4 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYFIRNT*SSSAAN
Trigger: GTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAA...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp TTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGGGTGGGCGTGGCAGGCTaGTTGGCAAGGAGTGACTGT +
Preference number: 4 (lower is better)
Translates to: LTTQSFVMEILCLMLKVRVGVAG*LARSDC
Trigger: ACAGTCACTCCTTGCCAAGCAGCCTGCCACGCCCAC...CCTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTGCAGGGGATTCCTGTTaGTTCATTAGGAACACCTGC +
Preference number: 4 (lower is better)
Translates to: MEPPKCASHTRTSQRSICAGDSC*FIRNTC
Trigger: GCAGGTGTTCCTAATGAAGCAACAGGAATCCCCTGC...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp CATTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGACGGCAGCTTGGACCTaGCACGGGTGGACACTTCGC +
Preference number: 4 (lower is better)
Translates to: HLTTQSFVMEILCLMLKVTAAWT*HGWTLR
Trigger: GCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGT...CACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp TGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTTGTCCTGACTTCTTaGCTGTGCTCTGCACTCCAC +
Preference number: 4 (lower is better)
Translates to: WSLLNVHLTLGQAKEVYVFVLTS*LCSALH
Trigger: GTGGAGTGCAGAGCACAGCCAAGAAGTCAGGACAAA...TACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp CAGAGCAGTCGCTCTCACCCTCATCAAGACAACAGTCTCTTCAGTTTAAACACTTACTCAACAGACTATTaGAGAAGCTGGCCAATACCC +
Preference number: 4 (lower is better)
Translates to: QSSRSHPHQDNSLFSLNTYSTDY*RSWPIP
Trigger: GGGTATTGGCCAGCTTCTTCAATAGTCTGTTGAGTA...AGTGTTTAAACTGAAGAGACTGTTGTCTTGATGAGGGTGAGAGCGACTGCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATTTCATTGTCCCAGCCTaGAGGTATAAAAACCGCGTC +
Preference number: 4 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYFIVPA*RYKNRV
Trigger: GACGCGGTTTTTATACCTGCAGGCTGGGACAATGAA...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp TTTGGTCATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTCTGCTCATCCTCCGCTaGCAACTCTTTGTCATGGAC +
Preference number: 4 (lower is better)
Translates to: FGHLTDALSKEGQASFSVLLILR*QLFVMD
Trigger: GTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAG...AACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATGACCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp CATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTCATTAGGAACACCTaGTCATCCTCCGCTGCCAAC +
Preference number: 4 (lower is better)
Translates to: HLTDALSKEGQASFSVEEFIRNT*SSSAAN
Trigger: GTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAA...CTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTGCAAGGAGTGACTGTTaGTTCATTAGGAACACCTGC +
Preference number: 4 (lower is better)
Translates to: MEPPKCASHTRTSQRSICARSDC*FIRNTC
Trigger: GCAGGTGTTCCTAATGAAGCAACAGTCACTCCTTGC...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp CAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCGCAAGGAGTGACTGTTaGTTCATTAGGAACACCTGC +
Preference number: 4 (lower is better)
Translates to: QASFSVEEFVTMESGFRVARSDC*FIRNTC
Trigger: GCAGGTGTTCCTAATGAAGCAACAGTCACTCCTTGC...GACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp TTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCATTCTATCCTTCTTGGCTGTGCTCTaGACTCCACCAGCACTAGGA +
Preference number: 4 (lower is better)
Translates to: FSVEEFVTMESGFRVILSFLAVL*TPPALG
Trigger: TCCTAGTGCTGGTGGAGTGCAGAGCACAGCCAAGAA...GGATAGAATGACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp TTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGGTGGACCTGGCACGGGTaGACACTTCGCTCAAGATCG +
Preference number: 4 (lower is better)
Translates to: LTTQSFVMEILCLMLKVRWTWHG*TLRSRS
Trigger: CGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCA...CCTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCGCCAACTCTTTGTCATaGACCAGCTTTCTCACAGGC +
Preference number: 4 (lower is better)
Translates to: DALSKEGQASFSVEEFVTANSLS*TSFLTG
Trigger: GCCTGTGAGAAAGCTGGTCCATGACAAAGAGTTGGC...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp TTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGGAGGTTCTTGTGGGCGTaGCAGGCTGCTTGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: LTTQSFVMEILCLMLKVRRFLWA*QAAWQG
Trigger: TCCTTGCCAAGCAGCCTGCCACGCCCACAAGAACCT...CCTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR CAA 72 bp ACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTaGAAAGTGAGGCCAGGCCAAGCAGTCCATCCTGCA +
Preference number: 4 (lower is better)
Translates to: TQSFVMEILCLM*KVRPGQAVHPA
Trigger: TGCAGGATGGACTGCTTGGCCTGGCCTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR TCA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATATGTCGGCAACAAAAATaGCCAGGGTCTCCCGCAGAG +
Preference number: 4 (lower is better)
Translates to: KLTACAESEKSWSYQMNICRQQK*PGSPAE
Trigger: CTCTGCGGGAGACCCTGGTCATTTTTGTTGCCGACA...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp CATTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGCTCTGTGGGGAACCCTaGCAACCTTCTTCAGGCTCG +
Preference number: 4 (lower is better)
Translates to: HLTTQSFVMEILCLMLKVLCGEP*QPSSGS
Trigger: CGAGCCTGAAGAAGGTTGTCAGGGTTCCCCACAGAG...CACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR TCA 90 bp TTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGGGGATCCCCAGGTTATaGGTCAGCACGTTGTCACCC +
Preference number: 4 (lower is better)
Translates to: FDNTVFCHGDTMSYVESEGIPRL*VSTLSP
Trigger: GGGTGACAACGTGCTGACTCATAACCTGGGGATCCC...CTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR TCA 90 bp CAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCTACTCAACAGACTATTaGAGAAGCTGGCCAATACCC +
Preference number: 4 (lower is better)
Translates to: QASFSVEEFVTMESGFRVYSTDY*RSWPIP
Trigger: GGGTATTGGCCAGCTTCTTCAATAGTCTGTTGAGTA...GACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR TCA 90 bp AACTGTTGCTATCTGGTTTCTACCGAGCTTGTACTTACTAACACTGCCTGCCCGTTCTTCCTGAACATTTaGCAACACAGTCTTTTGTCC +
Preference number: 4 (lower is better)
Translates to: NCCYLVSTELVLTNTACPFFLNI*QHSLLS
Trigger: GGACAAAAGACTGTGTTGTCAAATGTTCAGGAAGAA...CGGGCAGGCAGTGTTAGTAAGTACAAGCTCGGTAGAAACCAGATAGCAACAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp CTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATACATACACCAGAATGTTTTTaGCGGACGGCAGCTTGGACC +
Preference number: 4 (lower is better)
Translates to: LTACAESEKSWSYQMNIHTPECF*RTAAWT
Trigger: GGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGT...ATGTATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR GCA 90 bp TTATTTGGTCATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTACACCAGAATGTTTTTaGCGGACGGCAGCTTGGACC +
Preference number: 4 (lower is better)
Translates to: LFGHLTDALSKEGQASFSTPECF*RTAAWT
Trigger: GGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGT...AGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATGACCAAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCGAAGACCATAGACTCTaGCCTTCCTCCTCTTCACTT +
Preference number: 4 (lower is better)
Translates to: DALSKEGQASFSVEEFVTEDHRL*PSSSSL
Trigger: AAGTGAAGAGGAGGAAGGCCAGAGTCTATGGTCTTC...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCCCGTGTTCTGCTCCTTaGAGTTTGGTCATGAGAGTT +
Preference number: 4 (lower is better)
Translates to: DALSKEGQASFSVEEFVTPCSAP*SLVMRV
Trigger: AACTCTCATGACCAAACTCCAAGGAGCAGAACACGG...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATAAAGGCTGCTCCATACTaGAGGCAGAATCTCCGCAGG +
Preference number: 4 (lower is better)
Translates to: KLTACAESEKSWSYQMNIKAAPY*RQNLRR
Trigger: CCTGCGGAGATTCTGCCTCCAGTATGGAGCAGCCTT...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp AACTGTTGCTATCTGGTTTCTACCGAGCTTGTACTTACTAACACTGCCTGCCCGTTCATACGCGTCTTCTaGCTTCACGGTTGTAAAATT +
Preference number: 4 (lower is better)
Translates to: NCCYLVSTELVLTNTACPFIRVF*LHGCKI
Trigger: AATTTTACAACCGTGAAGCCAGAAGACGCGTATGAA...CGGGCAGGCAGTGTTAGTAAGTACAAGCTCGGTAGAAACCAGATAGCAACAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp CCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTGTTGCCAACTCTTTGTCATaGACCAGCTTTCTCACAGGC +
Preference number: 4 (lower is better)
Translates to: PPKCASHTRTSQRSICIVANSLS*TSFLTG
Trigger: GCCTGTGAGAAAGCTGGTCCATGACAAAGAGTTGGC...AACAATACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp CTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATACATCCGCAGAGACTCAGCTaGAACTGCAAATTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: LTACAESEKSWSYQMNIHPQRLS*NCKFQQ
Trigger: CTGCTGAAATTTGCAGTTTCAGCTGAGTCTCTGCGG...ATGTATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp AGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTGCCGCATTATTTTTaGTGTTTGGATCTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: RRVRLHFLLKSLLPWSLALPHYF*CLDLAS
Trigger: AGAAGCCAGATCCAAACATCAAAAATAATGCGGCAA...AGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp TGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTCATCTTGTCAATGTaGTCCCGTAAAACACTAGCC +
Preference number: 4 (lower is better)
Translates to: WSLLNVHLTLGQAKEVYVFILSM*SRKTLA
Trigger: GGCTAGTGTTTTACGGGAGCACATTGACAAGATGAA...TACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATACTGCTCATCCTCCGCTaGCAACTCTTTGTCATGGAC +
Preference number: 4 (lower is better)
Translates to: KLTACAESEKSWSYQMNILLILR*QLFVMD
Trigger: GTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAG...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp AAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATTTCTTGGCTGTGCTCTaGACTCCACCAGCACTAGGA +
Preference number: 4 (lower is better)
Translates to: KTDSMCRIRKILVLSDEYFLAVL*TPPALG
Trigger: TCCTAGTGCTGGTGGAGTGCAGAGCACAGCCAAGAA...ATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp CCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTGTTCCGTGTTCTGCTCCTTaGAGTTTGGTCATGAGAGTT +
Preference number: 4 (lower is better)
Translates to: PPKCASHTRTSQRSICIVPCSAP*SLVMRV
Trigger: AACTCTCATGACCAAACTCCAAGGAGCAGAACACGG...AACAATACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp TTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGGGCACACCACCAACACTaGGATCCCCAGGTTATGAGT +
Preference number: 4 (lower is better)
Translates to: LTTQSFVMEILCLMLKVRAHHQH*DPQVMS
Trigger: ACTCATAACCTGGGGATCCCAGTGTTGGTGGTGTGC...CCTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATCTCCAAGACGCTCATaGCATCACACTTTGTGCACA +
Preference number: 4 (lower is better)
Translates to: PKTDSMCRIRKILVLSDESPRRS*HHTLCT
Trigger: TGTGCACAAAGTGTGATGCCATGAGCGTCTTGGAGA...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp CATTTAGAACAAGCCCAGCTCCCATTCTGTTTAGTGCTTAGTTTGGAAATGTTTTTTGTCCTGACTTCTTaGCTGTGCTCTGCACTCCAC +
Preference number: 4 (lower is better)
Translates to: HLEQAQLPFCLVLSLEMFFVLTS*LCSALH
Trigger: GTGGAGTGCAGAGCACAGCCAAGAAGTCAGGACAAA...AAACATTTCCAAACTAAGCACTAAACAGAATGGGAGCTGGGCTTGTTCTAAATG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CCA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTTGTTACCATGGAGTCTaGCTTTCGAGTCATTCTATC +
Preference number: 4 (lower is better)
Translates to: MEPPKCASHTRTSQRSICCYHGV*LSSHSI
Trigger: GATAGAATGACTCGAAAGCCAGACTCCATGGTAACA...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTAAGAGTTTGTTACCATaGAGTCTGGCTTTCGAGTCA +
Preference number: 4 (lower is better)
Translates to: MEPPKCASHTRTSQRSICKSLLP*SLAFES
Trigger: TGACTCGAAAGCCAGACTCCATGGTAACAAACTCTT...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp TTATTTGGTCATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTACAATGACCCTTATCTaGCTTCTTGGCTGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: LFGHLTDALSKEGQASFSTMTLI*LLGCAL
Trigger: CAGAGCACAGCCAAGAAGTCAGATAAGGGTCATTGT...AGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATGACCAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR CAA 72 bp TATTTCAATAGTACAACCGGCACAAGACACATCTTTTaGTTGTTAGAGAGGCAAGCAAGCACTCAGCTTTCC +
Preference number: 4 (lower is better)
Translates to: YFNSTTGTRHIF*LLERQASTQLS
Trigger: GGAAAGCTGAGTGCTTGCTTGCCTCTCTAACAACAAAAAGATGTGTCTTGTGCCGGTTGTACTATTGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp CATTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGCCAGAGCCTGGACAATaGCCCTTATCTGACTTCTTG +
Preference number: 4 (lower is better)
Translates to: HLTTQSFVMEILCLMLKVPEPGQ*PLSDFL
Trigger: CAAGAAGTCAGATAAGGGTCATTGTCCAGGCTCTGG...CACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp AAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATACACTAGCCCACTTCTaGAGAGACTCCATTATCGTC +
Preference number: 4 (lower is better)
Translates to: KTDSMCRIRKILVLSDEYTLAHF*RDSIIV
Trigger: GACGATAATGGAGTCTCTGCAGAAGTGGGCTAGTGT...ATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATAGAAGACCATAGACTCTaGCCTTCCTCCTCTTCACTT +
Preference number: 4 (lower is better)
Translates to: KLTACAESEKSWSYQMNIEDHRL*PSSSSL
Trigger: AAGTGAAGAGGAGGAAGGCCAGAGTCTATGGTCTTC...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATATTTCTCTTCCTTCACTaGGGTGTAAATCAAGGCTGC +
Preference number: 4 (lower is better)
Translates to: KLTACAESEKSWSYQMNIFLFLH*GVNQGC
Trigger: GCAGCCTTGATTTACACCTCAGTGAAGGAAGAGAAA...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATTGCCGCATTATTTTTaGTGTTTGGATCTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: PKTDSMCRIRKILVLSDELPHYF*CLDLAS
Trigger: AGAAGCCAGATCCAAACATCAAAAATAATGCGGCAA...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp AAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATTACTCAACAGACTATTaGAGAAGCTGGCCAATACCC +
Preference number: 4 (lower is better)
Translates to: KTDSMCRIRKILVLSDEYYSTDY*RSWPIP
Trigger: GGGTATTGGCCAGCTTCTTCAATAGTCTGTTGAGTA...ATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATTCTTCCTGAACATTTaGCAACACAGTCTTTTGTCC +
Preference number: 4 (lower is better)
Translates to: PKTDSMCRIRKILVLSDEFFLNI*QHSLLS
Trigger: GGACAAAAGACTGTGTTGTCAAATGTTCAGGAAGAA...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR GCA 90 bp TTATTTGGTCATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTTTCATCTTGTCAATGTaGTCCCGTAAAACACTAGCC +
Preference number: 4 (lower is better)
Translates to: LFGHLTDALSKEGQASFSFILSM*SRKTLA
Trigger: GGCTAGTGTTTTACGGGAGCACATTGACAAGATGAA...AGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATGACCAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp TTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGTTCATTGTCCCAGCCTaGAGGTATAAAAACCGCGTC +
Preference number: 4 (lower is better)
Translates to: FDNTVFCHGDTMSYVESEFIVPA*RYKNRV
Trigger: GACGCGGTTTTTATACCTGCAGGCTGGGACAATGAA...CTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CCA 90 bp CATTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGTCTCCAAGACGCTCATaGCATCACACTTTGTGCACA +
Preference number: 4 (lower is better)
Translates to: HLTTQSFVMEILCLMLKVSPRRS*HHTLCT
Trigger: TGTGCACAAAGTGTGATGCCATGAGCGTCTTGGAGA...CACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
3UTR CAA 72 bp GACATTAAATACTTCCCCCACACTTTCCCTAGAACATaGCCAACATGGTACAAAATGAGAAATCAATCACCC +
Preference number: 4 (lower is better)
Translates to: DIKYFPHTFPRT*PTWYKMRNQSP
Trigger: GGGTGATTGATTTCTCATTTTGTACCATGTTGGCAATGTTCTAGGGAAAGTGTGGGGGAAGTATTTAATGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR TCA 90 bp CATTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGTTTCTCTTCCTTCACTaGGGTGTAAATCAAGGCTGC +
Preference number: 4 (lower is better)
Translates to: HLTTQSFVMEILCLMLKVFLFLH*GVNQGC
Trigger: GCAGCCTTGATTTACACCTCAGTGAAGGAAGAGAAA...CACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR GCA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATATTCATCTTGTCAATGTaGTCCCGTAAAACACTAGCC +
Preference number: 4 (lower is better)
Translates to: KLTACAESEKSWSYQMNIFILSM*SRKTLA
Trigger: GGCTAGTGTTTTACGGGAGCACATTGACAAGATGAA...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATATTGCCGCATTATTTTTaGTGTTTGGATCTGGCTTCT +
Preference number: 4 (lower is better)
Translates to: KLTACAESEKSWSYQMNILPHYF*CLDLAS
Trigger: AGAAGCCAGATCCAAACATCAAAAATAATGCGGCAA...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR TCA 90 bp AAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATGGCTTCATTTTCTGTTaGAGAGTTTGTTACCATGGA +
Preference number: 4 (lower is better)
Translates to: KTDSMCRIRKILVLSDEYGFIFC*RVCYHG
Trigger: TCCATGGTAACAAACTCTTCAACAGAAAATGAAGCC...ATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp AAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATTTCATACGCGTCTTCTaGCTTCACGGTTGTAAAATT +
Preference number: 4 (lower is better)
Translates to: KTDSMCRIRKILVLSDEYFIRVF*LHGCKI
Trigger: AATTTTACAACCGTGAAGCCAGAAGACGCGTATGAA...ATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CCA 90 bp TTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGTTCATACGCGTCTTCTaGCTTCACGGTTGTAAAATT +
Preference number: 4 (lower is better)
Translates to: FDNTVFCHGDTMSYVESEFIRVF*LHGCKI
Trigger: AATTTTACAACCGTGAAGCCAGAAGACGCGTATGAA...CTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS CCA 90 bp CTGGTCCACCCCGACCCTGCGTCCTTGGAGAGCCAGAGGGTCCTCTaGCAGGGGATTCGGAGGTTCTTGTGGGCGTGGCAGGCTGCTTGG +
Preference number: 5 (lower is better)
Translates to: LVHPDPASLESQRVL*QGIRRFLWAWQAAW
Trigger: CCAAGCAGCCTGCCACGCCCACAAGAACCTCCGAATCCCCTGCCAGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CCA 90 bp GGAGGCACTTGGTACACTAGCTGGTCCACCCCGACCCTGCGTCCTTaGAGAGCCAGAGGGTCCTCTGGCAGGGGATTCCTGTTGCTTCAT +
Preference number: 5 (lower is better)
Translates to: GGTWYTSWSTPTLRP*RARGSSGRGFLLLH
Trigger: ATGAAGCAACAGGAATCCCCTGCCAGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACCAGCTAGTGTACCAAGTGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212230.2
CDS TCA 90 bp AGGCTGCTCCATACTGGAGGCAGAATCTCCGCAGGTGCGCCTGGATaGAGTCCAGGTGCTCGTCCCTGTAATCGTGCTCCTTCTCCAAGA +
Preference number: 5 (lower is better)
Translates to: RLLHTGGRISAGAPG*SPGARPCNRAPSPR
Trigger: TCTTGGAGAAGGAGCACGATTACAGGGACGAGCACCTGGACTTCATCCAGGCGCACCTGCGGAGATTCTGCCTCCAGTATGGAGCAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS GCA 90 bp GGAACAGGGCAAACTCACCAGCTCTACCGAACACCAGAATGTTTTTaGCGGACGGCAGCTTGGACCTGGCACGGGTGGACACTTCGCTCA +
Preference number: 5 (lower is better)
Translates to: GTGQTHQLYRTPECF*RTAAWTWHGWTLRS
Trigger: TGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAGAGCTGGTGAGTTTGCCCTGTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR CAA 90 bp CCCGACATCTCTCCAAGGACAAGGGACATGGCCTGGGTCAAGCATGTGGGTCCCAACACCAGAATGTTTTaGCCGGACGGCAGCTTGGAC +
Preference number: 5 (lower is better)
Translates to: PDISPRTRDMAWVKHVGPNTRMF*PDGSLD
Trigger: GTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTT...GGGACCCACATGCTTGACCCAGGCCATGTCCCTTGTCCTTGGAGAGATGTCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp CTTTTAAGAGTGACTGGCAGAGACAGCCAACCCAAGATGGCAAATGACCTTCTGTTGCCGGACGGCAGCTaGGACCTGGCACGGGTGGAC +
Preference number: 5 (lower is better)
Translates to: LLRVTGRDSQPKMANDLLLPDGS*DLARVD
Trigger: GTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAA...CAGAAGGTCATTTGCCATCTTGGGTTGGCTGTCTCTGCCAGTCACTCTTAAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS CCA 90 bp ACACCAGAATGTTTTTGCCGGACGGCAGCTTGGACCTGGCACGGGTaGACACTTCGCTCAAGATCGAAGACCATAGACTCTGGCCTTCCT +
Preference number: 5 (lower is better)
Translates to: TPECFCRTAAWTWHG*TLRSRSKTIDSGLP
Trigger: AGGAAGGCCAGAGTCTATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212148.2
ENSMUST00000212654.2
CDS CCA 90 bp CTCCAAGACGCTCATGGCATCACACTTTGTGCACACCACCAACACTaGGATCCCCAGGTTATGAGTCAGCACGTTGTCACCCAGAGGGAG +
Preference number: 5 (lower is better)
Translates to: LQDAHGITLCAHHQH*DPQVMSQHVVTQRE
Trigger: CTCCCTCTGGGTGACAACGTGCTGACTCATAACCTGGGGATCCCAGTGTTGGTGGTGTGCACAAAGTGTGATGCCATGAGCGTCTTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CCA 90 bp CACCAGCTCTACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTTaGACCTGGCACGGGTGGACACTTCGCTCAAGATCGAAGACCATA +
Preference number: 5 (lower is better)
Translates to: HQLYRTPECFCRTAA*TWHGWTLRSRSKTI
Trigger: TATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAGAGCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR CAA 90 bp AGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTGCCGGACGGCAGCTaGGACCTGGCACGGGTGGAC +
Preference number: 5 (lower is better)
Translates to: RRVRLHFLLKSLLPWSLALPDGS*DLARVD
Trigger: GTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAA...AGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS GCA 90 bp GAGGGTCCTCTGGCAGGGGATTCCTGTTGCTTCATTAGGAACACCTaGTCATCCTCCGCTGCCAACTCTTTGTCATGGACCAGCTTTCTC +
Preference number: 5 (lower is better)
Translates to: EGPLAGDSCCFIRNT*SSSAANSLSWTSFL
Trigger: GAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAAGCAACAGGAATCCCCTGCCAGAGGACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212230.2
CDS CCA 90 bp CTTCACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTTGGACCTaGCACGGGTGGACACTTCGCTCAAGATCGAAGACCATAGACTCT +
Preference number: 5 (lower is better)
Translates to: LHRTPECFCRTAAWT*HGWTLRSRSKTIDS
Trigger: AGAGTCTATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CCA 90 bp CTCTACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTTGGACCTaGCACGGGTGGACACTTCGCTCAAGATCGAAGACCATAGACTCT +
Preference number: 5 (lower is better)
Translates to: LYRTPECFCRTAAWT*HGWTLRSRSKTIDS
Trigger: AGAGTCTATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR CAA 90 bp GATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCGCCACTGCGGGCCCGTaGGGACCCAGCAGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: DALSKEGQASFSVEEFVTATAGP*GPSSSF
Trigger: GAAGCTGCTGCTGGGTCCCAACGGGCCCGCAGTGGC...GGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp TCTTACCAGAACCATCTTCACCTGTTAAGGTCTCTCTCACTCGCTCTCATCAACCTTCCTCCTCTTCACTaGTCAGGTCGCCGGCGGCCG +
Preference number: 5 (lower is better)
Translates to: SYQNHLHLLRSLSLALINLPPLH*SGRRRP
Trigger: CGGCCGCCGGCGACCTGACAAGTGAAGAGGAGGAAG...GTTGATGAGAGCGAGTGAGAGAGACCTTAACAGGTGAAGATGGTTCTGGTAAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS GCA 90 bp GCAGGCTGCTTGGCAAGGAGTGACTGTTGCTTCATTAGGAACACCTaGTCATCCTCCGCTGCCAACTCTTTGTCATGGACCAGCTTTCTC +
Preference number: 5 (lower is better)
Translates to: AGCLARSDCCFIRNT*SSSAANSLSWTSFL
Trigger: GAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAAGCAACAGTCACTCCTTGCCAAGCAGCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CCA 90 bp AACCATCTTCACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTTaGACCTGGCACGGGTGGACACTTCGCTCAAGATCGAAGACCATA +
Preference number: 5 (lower is better)
Translates to: NHLHRTPECFCRTAA*TWHGWTLRSRSKTI
Trigger: TATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTGAAGATGGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAAGCCACTGCGGGCCCGTaGGGACCCAGCAGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: PKTDSMCRIRKILVLSDEATAGP*GPSSSF
Trigger: GAAGCTGCTGCTGGGTCCCAACGGGCCCGCAGTGGC...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp CCCGACATCTCTCCAAGGACAAGGGACATGGCCTGGGTCAAGCATGTGGGTCCCCTTGCCGCATTATTTTaGATGTTTGGATCTGGCTTC +
Preference number: 5 (lower is better)
Translates to: PDISPRTRDMAWVKHVGPLAALF*MFGSGF
Trigger: GAAGCCAGATCCAAACATCAAAAATAATGCGGCAAG...GGGACCCACATGCTTGACCCAGGCCATGTCCCTTGTCCTTGGAGAGATGTCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp CTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATACATTTGCCGGACGGCAGCTaGGACCTGGCACGGGTGGAC +
Preference number: 5 (lower is better)
Translates to: LTACAESEKSWSYQMNIHLPDGS*DLARVD
Trigger: GTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAA...ATGTATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp ACCAGGGAGCTACAGAAAGAACCTTTCTGTATCAGGGAGGGTTACCACAGGCTCTTTTGTCCTGACTTCTaGGCTGTGCTCTGCACTCCA +
Preference number: 5 (lower is better)
Translates to: TRELQKEPFCIREGYHRLFCPDF*AVLCTP
Trigger: TGGAGTGCAGAGCACAGCCAAGAAGTCAGGACAAAA...GAGCCTGTGGTAACCCTCCCTGATACAGAAAGGTTCTTTCTGTAGCTCCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS GCA 90 bp TCCAGATCCCGCATCTCCTCCGGTGGAATCTTCATCTTGTCAATGTaGTCCCGTAAAACACTAGCCCACTTCTGCAGAGACTCCATTATC +
Preference number: 5 (lower is better)
Translates to: SRSRISSGGIFILSM*SRKTLAHFCRDSII
Trigger: GATAATGGAGTCTCTGCAGAAGTGGGCTAGTGTTTTACGGGAGCACATTGACAAGATGAAGATTCCACCGGAGGAGATGCGGGATCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAAGGCGTGGCAGGCTGCTaGGCAAGGAGTGACTGTTGC +
Preference number: 5 (lower is better)
Translates to: PKTDSMCRIRKILVLSDEGVAGC*ARSDCC
Trigger: GCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGCC...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp TTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCATTCTATCCGGCGTGGCAGGCTGCTaGGCAAGGAGTGACTGTTGC +
Preference number: 5 (lower is better)
Translates to: FSVEEFVTMESGFRVILSGVAGC*ARSDCC
Trigger: GCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGCC...GGATAGAATGACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS TCA 90 bp GAGACTCCATTATCGTCCAAGGTCGAGACATGTCGGCAACAAAAATaGCCAGGGTCTCCCGCAGAGACTCAGCTGAAACTGCAAATTTCA +
Preference number: 5 (lower is better)
Translates to: ETPLSSKVETCRQQK*PGSPAETQLKLQIS
Trigger: TGAAATTTGCAGTTTCAGCTGAGTCTCTGCGGGAGACCCTGGTCATTTTTGTTGCCGACATGTCTCGACCTTGGACGATAATGGAGTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp AAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATACTTCCTCCTCTTCACTaGTCAGGTCGCCGGCGGCCG +
Preference number: 5 (lower is better)
Translates to: KLTACAESEKSWSYQMNILPPLH*SGRRRP
Trigger: CGGCCGCCGGCGACCTGACAAGTGAAGAGGAGGAAG...TATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp TCTTACCAGAACCATCTTCACCTGTTAAGGTCTCTCTCACTCGCTCTCATCAACAACACCAGAATGTTTTaGCCGGACGGCAGCTTGGAC +
Preference number: 5 (lower is better)
Translates to: SYQNHLHLLRSLSLALINNTRMF*PDGSLD
Trigger: GTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTT...GTTGATGAGAGCGAGTGAGAGAGACCTTAACAGGTGAAGATGGTTCTGGTAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS-3UTR CAA 90 bp ACCAGGGAGCTACAGAAAGAACCTTTCTGTATCAGGGAGGGTTACCACAGGCTCGGTGGAATCTTCATCTaGTCAATGTGCTCCCGTAAA +
Preference number: 5 (lower is better)
Translates to: TRELQKEPFCIREGYHRLGGIFI*SMCSRK
Trigger: TTTACGGGAGCACATTGACAAGATGAAGATTCCACC...GAGCCTGTGGTAACCCTCCCTGATACAGAAAGGTTCTTTCTGTAGCTCCCTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp GCTCCGCAAAGCTGGTGGACTTTGGCAACTACTGAGCACATGACAACACGCATCTTACTCAACAGACTATaGAAGAAGCTGGCCAATACC +
Preference number: 5 (lower is better)
Translates to: APQSWWTLATTEHMTTRILLNRL*KKLANT
Trigger: GGTATTGGCCAGCTTCTTCAATAGTCTGTTGAGTAA...GATGCGTGTTGTCATGTGCTCAGTAGTTGCCAAAGTCCACCAGCTTTGCGGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS GCA 90 bp ATCTTCATCTTGTCAATGTGCTCCCGTAAAACACTAGCCCACTTCTaGAGAGACTCCATTATCGTCCAAGGTCGAGACATGTCGGCAACA +
Preference number: 5 (lower is better)
Translates to: IFILSMCSRKTLAHF*RDSIIVQGRDMSAT
Trigger: TGTTGCCGACATGTCTCGACCTTGGACGATAATGGAGTCTCTGCAGAAGTGGGCTAGTGTTTTACGGGAGCACATTGACAAGATGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp TTTGACAACACAGTCTTTTGTCATGGAGATACTATGTCTTATGTTGAAAGTGAGCTTCCTCCTCTTCACTaGTCAGGTCGCCGGCGGCCG +
Preference number: 5 (lower is better)
Translates to: FDNTVFCHGDTMSYVESELPPLH*SGRRRP
Trigger: CGGCCGCCGGCGACCTGACAAGTGAAGAGGAGGAAG...CTCACTTTCAACATAAGACATAGTATCTCCATGACAAAAGACTGTGTTGTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATTCCGCTGCCAACTCTTaGTCATGGACCAGCTTTCTC +
Preference number: 5 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYSAANS*SWTSFL
Trigger: GAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGA...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp CAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCTCCGCTGCCAACTCTTaGTCATGGACCAGCTTTCTC +
Preference number: 5 (lower is better)
Translates to: QASFSVEEFVTMESGFRVSAANS*SWTSFL
Trigger: GAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGA...GACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp ACCAGGGAGCTACAGAAAGAACCTTTCTGTATCAGGGAGGGTTACCACAGGCTCGTTCTTCCTGAACATTaGACAACACAGTCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: TRELQKEPFCIREGYHRLVLPEH*TTQSFV
Trigger: GACAAAAGACTGTGTTGTCAAATGTTCAGGAAGAAC...GAGCCTGTGGTAACCCTCCCTGATACAGAAAGGTTCTTTCTGTAGCTCCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS CCA 90 bp TTCATTAGGAACACCTGCTCATCCTCCGCTGCCAACTCTTTGTCATaGACCAGCTTTCTCACAGGCGGCTTTACAATAAAATCTTCATAC +
Preference number: 5 (lower is better)
Translates to: FIRNTCSSSAANSLS*TSFLTGGFTIKSSY
Trigger: GTATGAAGATTTTATTGTAAAGCCGCCTGTGAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp TTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCATTCTATCCAACACCAGAATGTTTTaGCCGGACGGCAGCTTGGAC +
Preference number: 5 (lower is better)
Translates to: FSVEEFVTMESGFRVILSNTRMF*PDGSLD
Trigger: GTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTT...GGATAGAATGACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp CCAAAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATCCGCTGCCAACTCTTaGTCATGGACCAGCTTTCTC +
Preference number: 5 (lower is better)
Translates to: PKTDSMCRIRKILVLSDESAANS*SWTSFL
Trigger: GAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGA...TTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp TTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCATTCTATCCCCCTTATCTGACTTCTaGGCTGTGCTCTGCACTCCA +
Preference number: 5 (lower is better)
Translates to: FSVEEFVTMESGFRVILSPLSDF*AVLCTP
Trigger: TGGAGTGCAGAGCACAGCCAAGAAGTCAGATAAGGG...GGATAGAATGACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp ATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTGGTGGAATCTTCATCTaGTCAATGTGCTCCCGTAAA +
Preference number: 5 (lower is better)
Translates to: MEPPKCASHTRTSQRSICGGIFI*SMCSRK
Trigger: TTTACGGGAGCACATTGACAAGATGAAGATTCCACC...ACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp AGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTGCTATTTTCTTTTCATaGTCCCAGCCTGCAGGTATA +
Preference number: 5 (lower is better)
Translates to: RRVRLHFLLKSLLPWSLAAIFFS*SQPAGI
Trigger: TATACCTGCAGGCTGGGACAATGAAAAGAAAATAGC...AGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp CCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTGTTTTTTGTCCTGACTTCTaGGCTGTGCTCTGCACTCCA +
Preference number: 5 (lower is better)
Translates to: PPKCASHTRTSQRSICIVFCPDF*AVLCTP
Trigger: TGGAGTGCAGAGCACAGCCAAGAAGTCAGGACAAAA...AACAATACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp TGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTAGCTATTTTCTTTTCATaGTCCCAGCCTGCAGGTATA +
Preference number: 5 (lower is better)
Translates to: WSLLNVHLTLGQAKEVYVAIFFS*SQPAGI
Trigger: TATACCTGCAGGCTGGGACAATGAAAAGAAAATAGC...TACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGCTATTTTCTTTTCATaGTCCCAGCCTGCAGGTATA +
Preference number: 5 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYAIFFS*SQPAGI
Trigger: TATACCTGCAGGCTGGGACAATGAAAAGAAAATAGC...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp ACATGGAGCCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATTTACTCAACAGACTATaGAAGAAGCTGGCCAATACC +
Preference number: 5 (lower is better)
Translates to: TWSLLNVHLTLGQAKEVYLLNRL*KKLANT
Trigger: GGTATTGGCCAGCTTCTTCAATAGTCTGTTGAGTAA...ATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGGCTCCATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp AGGGTCAGGCTTCATTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCTTACTCAACAGACTATaGAAGAAGCTGGCCAATACC +
Preference number: 5 (lower is better)
Translates to: RVRLHFLLKSLLPWSLAFLLNRL*KKLANT
Trigger: GGTATTGGCCAGCTTCTTCAATAGTCTGTTGAGTAA...GAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGACCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp ACAGAGCAGTCGCTCTCACCCTCATCAAGACAACAGTCTCTTCAGTTTAAACACAGGCTTCATTTTCTGTaGAAGAGTTTGTTACCATGG +
Preference number: 5 (lower is better)
Translates to: TEQSLSPSSRQQSLQFKHRLHFL*KSLLPW
Trigger: CCATGGTAACAAACTCTTCAACAGAAAATGAAGCCT...GTGTTTAAACTGAAGAGACTGTTGTCTTGATGAGGGTGAGAGCGACTGCTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041769.8
CDS-3UTR CAA 90 bp TTTTCTGTTGAAGAGTTTGTTACCATGGAGTCTGGCTTTCGAGTCATTCTATCCGGTGGAATCTTCATCTaGTCAATGTGCTCCCGTAAA +
Preference number: 5 (lower is better)
Translates to: FSVEEFVTMESGFRVILSGGIFI*SMCSRK
Trigger: TTTACGGGAGCACATTGACAAGATGAAGATTCCACC...GGATAGAATGACTCGAAAGCCAGACTCCATGGTAACAAACTCTTCAACAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp CATTTGACAGATGCACTTTCAAAGGAGGGTCAGGCTTCATTTTCTGTTGAAGAGCTTGCCGCATTATTTTaGATGTTTGGATCTGGCTTC +
Preference number: 5 (lower is better)
Translates to: HLTDALSKEGQASFSVEELAALF*MFGSGF
Trigger: GAAGCCAGATCCAAACATCAAAAATAATGCGGCAAG...CTCTTCAACAGAAAATGAAGCCTGACCCTCCTTTGAAAGTGCATCTGTCAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212654.2
CDS-3UTR CAA 90 bp CCTCCTAAATGTGCATCTCACACTCGGACAAGCCAAAGAAGTATATGTATTGTTCTTGCCGCATTATTTTaGATGTTTGGATCTGGCTTC +
Preference number: 5 (lower is better)
Translates to: PPKCASHTRTSQRSICIVLAALF*MFGSGF
Trigger: GAAGCCAGATCCAAACATCAAAAATAATGCGGCAAG...AACAATACATATACTTCTTTGGCTTGTCCGAGTGTGAGATGCACATTTAGGAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp AAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATGTTCTTCCTGAACATTaGACAACACAGTCTTTTGTC +
Preference number: 5 (lower is better)
Translates to: KTDSMCRIRKILVLSDEYVLPEH*TTQSFV
Trigger: GACAAAAGACTGTGTTGTCAAATGTTCAGGAAGAAC...ATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS-3UTR CAA 90 bp AAAACTGACAGCATGTGCCGAATCAGAAAAATCCTGGTCTTATCAGATGAATATAGGCTTCATTTTCTGTaGAAGAGTTTGTTACCATGG +
Preference number: 5 (lower is better)
Translates to: KTDSMCRIRKILVLSDEYRLHFL*KSLLPW
Trigger: CCATGGTAACAAACTCTTCAACAGAAAATGAAGCCT...ATATTCATCTGATAAGACCAGGATTTTTCTGATTCGGCACATGCTGTCAGTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
CDS GCA 72 bp CTCCTCTTCACTTGTCAGGTCGCCGGCGGCCGCCACTaGGGGCCCGTTGGGACCCAGCAGCAGCTTCTTCTC +
Preference number: 6 (lower is better)
Translates to: LLFTCQVAGGRH*GPVGTQQQLLL
Trigger: GAGAAGAAGCTGCTGCTGGGTCCCAACGGGCCCGCAGTGGCGGCCGCCGGCGACCTGACAAGTGAAGAGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS GCA 72 bp GAGGCACTTGGTACACTAGCTGGTCCACCCCGACCCTaGGTCCTTGGAGAGCCAGAGGGTCCTCTGGCAGGG +
Preference number: 6 (lower is better)
Translates to: EALGTLAGPPRP*VLGEPEGPLAG
Trigger: CCCTGCCAGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACCAGCTAGTGTACCAAGTGCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CAA 72 bp TCGAAGACCATAGACTCTGGCCTTCCTCCTCTTCACTaGTCAGGTCGCCGGCGGCCGCCACTGCGGGCCCGT +
Preference number: 6 (lower is better)
Translates to: SKTIDSGLPPLH*SGRRRPPLRAR
Trigger: ACGGGCCCGCAGTGGCGGCCGCCGGCGACCTGACAAGTGAAGAGGAGGAAGGCCAGAGTCTATGGTCTTCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 90 bp CGCTCAAGATCGAAGACCATAGACTCTGGCCTTCCTCCTCTTCACTaGTCAGGTCGCCGGCGGCCGCCACTGCGGGCCCGTTGGGACCCA +
Preference number: 6 (lower is better)
Translates to: RSRSKTIDSGLPPLH*SGRRRPPLRARWDP
Trigger: TGGGTCCCAACGGGCCCGCAGTGGCGGCCGCCGGCGACCTGACAAGTGAAGAGGAGGAAGGCCAGAGTCTATGGTCTTCGATCTTGAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CCA 72 bp TGGTACACTAGCTGGTCCACCCCGACCCTGCGTCCTTaGAGAGCCAGAGGGTCCTCTGGCAGGGGATTCGGA +
Preference number: 6 (lower is better)
Translates to: WYTSWSTPTLRP*RARGSSGRGFG
Trigger: TCCGAATCCCCTGCCAGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACCAGCTAGTGTACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CCA 72 bp TGGTACACTAGCTGGTCCACCCCGACCCTGCGTCCTTaGAGAGCCAGAGGGTCCTCTGGCAGGGGATTCCTG +
Preference number: 6 (lower is better)
Translates to: WYTSWSTPTLRP*RARGSSGRGFL
Trigger: CAGGAATCCCCTGCCAGAGGACCCTCTGGCTCTCCAAGGACGCAGGGTCGGGGTGGACCAGCTAGTGTACCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212230.2
CDS CCA 72 bp GTCCTCTGGCAGGGGATTCGGAGGTTCTTGTGGGCGTaGCAGGCTGCTTGGCAAGGAGTGACTGTTGCTTCA +
Preference number: 6 (lower is better)
Translates to: VLWQGIRRFLWA*QAAWQGVTVAS
Trigger: TGAAGCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGCCCACAAGAACCTCCGAATCCCCTGCCAGAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 90 bp AGGAACAGGGCAAACTCACCAGCTCTACCGAACACCAGAATGTTTTaGCCGGACGGCAGCTTGGACCTGGCACGGGTGGACACTTCGCTC +
Preference number: 6 (lower is better)
Translates to: RNRANSPALPNTRMF*PDGSLDLARVDTSL
Trigger: GAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAGAGCTGGTGAGTTTGCCCTGTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS TCA 72 bp CATACTGGAGGCAGAATCTCCGCAGGTGCGCCTGGATaGAGTCCAGGTGCTCGTCCCTGTAATCGTGCTCCT +
Preference number: 6 (lower is better)
Translates to: HTGGRISAGAPG*SPGARPCNRAP
Trigger: AGGAGCACGATTACAGGGACGAGCACCTGGACTTCATCCAGGCGCACCTGCGGAGATTCTGCCTCCAGTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CCA 72 bp CACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTTaGACCTGGCACGGGTGGACACTTCGCTCAAGATCG +
Preference number: 6 (lower is better)
Translates to: HRTPECFCRTAA*TWHGWTLRSRS
Trigger: CGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 72 bp GCAAACTCACCAGCTCTACCGAACACCAGAATGTTTTaGCCGGACGGCAGCTTGGACCTGGCACGGGTGGAC +
Preference number: 6 (lower is better)
Translates to: ANSPALPNTRMF*PDGSLDLARVD
Trigger: GTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAGAGCTGGTGAGTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS GCA 72 bp GCAGGGGATTCGGAGGTTCTTGTGGGCGTGGCAGGCTaGTTGGCAAGGAGTGACTGTTGCTTCATTAGGAAC +
Preference number: 6 (lower is better)
Translates to: AGDSEVLVGVAG*LARSDCCFIRN
Trigger: GTTCCTAATGAAGCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGCCCACAAGAACCTCCGAATCCCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS GCA 72 bp CAAACTCACCAGCTCTACCGAACACCAGAATGTTTTTaGCGGACGGCAGCTTGGACCTGGCACGGGTGGACA +
Preference number: 6 (lower is better)
Translates to: QTHQLYRTPECF*RTAAWTWHGWT
Trigger: TGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAGAGCTGGTGAGTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS CCA 72 bp ACACCAGAATGTTTTTGCCGGACGGCAGCTTGGACCTaGCACGGGTGGACACTTCGCTCAAGATCGAAGACC +
Preference number: 6 (lower is better)
Translates to: TPECFCRTAAWT*HGWTLRSRSKT
Trigger: GGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212148.2
ENSMUST00000212654.2
CDS CCA 72 bp TACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTTaGACCTGGCACGGGTGGACACTTCGCTCAAGATCG +
Preference number: 6 (lower is better)
Translates to: YRTPECFCRTAA*TWHGWTLRSRS
Trigger: CGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS CAA 72 bp TCACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTaGGACCTGGCACGGGTGGACACTTCGCTCAAGATC +
Preference number: 6 (lower is better)
Translates to: SPNTRMFLPDGS*DLARVDTSLKI
Trigger: GATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 72 bp GGGGATTCGGAGGTTCTTGTGGGCGTGGCAGGCTGCTaGGCAAGGAGTGACTGTTGCTTCATTAGGAACACC +
Preference number: 6 (lower is better)
Translates to: GDSEVLVGVAGC*ARSDCCFIRNT
Trigger: GGTGTTCCTAATGAAGCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGCCCACAAGAACCTCCGAATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 72 bp CTACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTaGGACCTGGCACGGGTGGACACTTCGCTCAAGATC +
Preference number: 6 (lower is better)
Translates to: LPNTRMFLPDGS*DLARVDTSLKI
Trigger: GATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS CAA 90 bp TCACCAGCTCTACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTaGGACCTGGCACGGGTGGACACTTCGCTCAAGATCGAAGACCAT +
Preference number: 6 (lower is better)
Translates to: SPALPNTRMFLPDGS*DLARVDTSLKIEDH
Trigger: ATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTAGAGCTGGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000212148.2
CDS GCA 72 bp TACCAGAACCATCTTCACCGAACACCAGAATGTTTTTaGCGGACGGCAGCTTGGACCTGGCACGGGTGGACA +
Preference number: 6 (lower is better)
Translates to: YQNHLHRTPECF*RTAAWTWHGWT
Trigger: TGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTGAAGATGGTTCTGGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CCA 72 bp TGTTTTTGCCGGACGGCAGCTTGGACCTGGCACGGGTaGACACTTCGCTCAAGATCGAAGACCATAGACTCT +
Preference number: 6 (lower is better)
Translates to: CFCRTAAWTWHG*TLRSRSKTIDS
Trigger: AGAGTCTATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212148.2
ENSMUST00000212654.2
CDS CCA 72 bp GGGATTCGGAGGTTCTTGTGGGCGTGGCAGGCTGCTTaGCAAGGAGTGACTGTTGCTTCATTAGGAACACCT +
Preference number: 6 (lower is better)
Translates to: GIRRFLWAWQAA*QGVTVASLGTP
Trigger: AGGTGTTCCTAATGAAGCAACAGTCACTCCTTGCCAAGCAGCCTGCCACGCCCACAAGAACCTCCGAATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 72 bp TTACCAGAACCATCTTCACCGAACACCAGAATGTTTTaGCCGGACGGCAGCTTGGACCTGGCACGGGTGGAC +
Preference number: 6 (lower is better)
Translates to: LPEPSSPNTRMF*PDGSLDLARVD
Trigger: GTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTGAAGATGGTTCTGGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 90 bp GAACCATCTTCACCGAACACCAGAATGTTTTTGCCGGACGGCAGCTaGGACCTGGCACGGGTGGACACTTCGCTCAAGATCGAAGACCAT +
Preference number: 6 (lower is better)
Translates to: EPSSPNTRMFLPDGS*DLARVDTSLKIEDH
Trigger: ATGGTCTTCGATCTTGAGCGAAGTGTCCACCCGTGCCAGGTCCAAGCTGCCGTCCGGCAAAAACATTCTGGTGTTCGGTGAAGATGGTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS GCA 72 bp CTGGCAGGGGATTCCTGTTGCTTCATTAGGAACACCTaGTCATCCTCCGCTGCCAACTCTTTGTCATGGACC +
Preference number: 6 (lower is better)
Translates to: LAGDSCCFIRNT*SSSAANSLSWT
Trigger: GGTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAAGCAACAGGAATCCCCTGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212230.2
CDS TCA 72 bp TTATCGTCCAAGGTCGAGACATGTCGGCAACAAAAATaGCCAGGGTCTCCCGCAGAGACTCAGCTGAAACTG +
Preference number: 6 (lower is better)
Translates to: LSSKVETCRQQK*PGSPAETQLKL
Trigger: CAGTTTCAGCTGAGTCTCTGCGGGAGACCCTGGTCATTTTTGTTGCCGACATGTCTCGACCTTGGACGATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS GCA 72 bp CGCATCTCCTCCGGTGGAATCTTCATCTTGTCAATGTaGTCCCGTAAAACACTAGCCCACTTCTGCAGAGAC +
Preference number: 6 (lower is better)
Translates to: RISSGGIFILSM*SRKTLAHFCRD
Trigger: GTCTCTGCAGAAGTGGGCTAGTGTTTTACGGGAGCACATTGACAAGATGAAGATTCCACCGGAGGAGATGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS GCA 72 bp TTGGCAAGGAGTGACTGTTGCTTCATTAGGAACACCTaGTCATCCTCCGCTGCCAACTCTTTGTCATGGACC +
Preference number: 6 (lower is better)
Translates to: LARSDCCFIRNT*SSSAANSLSWT
Trigger: GGTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAAGCAACAGTCACTCCTTGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041769.8
ENSMUST00000212654.2
CDS CAA 72 bp TCCAGATCCCGCATCTCCTCCGGTGGAATCTTCATCTaGTCAATGTGCTCCCGTAAAACACTAGCCCACTTC +
Preference number: 6 (lower is better)
Translates to: SRSRISSGGIFI*SMCSRKTLAHF
Trigger: GAAGTGGGCTAGTGTTTTACGGGAGCACATTGACAAGATGAAGATTCCACCGGAGGAGATGCGGGATCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CAA 72 bp ATTAGGAACACCTGCTCATCCTCCGCTGCCAACTCTTaGTCATGGACCAGCTTTCTCACAGGCGGCTTTACA +
Preference number: 6 (lower is better)
Translates to: IRNTCSSSAANS*SWTSFLTGGFT
Trigger: TGTAAAGCCGCCTGTGAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAGGTGTTCCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CAA 90 bp AATTTCCGTTCCAGATCCCGCATCTCCTCCGGTGGAATCTTCATCTaGTCAATGTGCTCCCGTAAAACACTAGCCCACTTCTGCAGAGAC +
Preference number: 6 (lower is better)
Translates to: NFRSRSRISSGGIFI*SMCSRKTLAHFCRD
Trigger: GTCTCTGCAGAAGTGGGCTAGTGTTTTACGGGAGCACATTGACAAGATGAAGATTCCACCGGAGGAGATGCGGGATCTGGAACGGAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS GCA 72 bp TTGTCAATGTGCTCCCGTAAAACACTAGCCCACTTCTaGAGAGACTCCATTATCGTCCAAGGTCGAGACATG +
Preference number: 6 (lower is better)
Translates to: LSMCSRKTLAHF*RDSIIVQGRDM
Trigger: CATGTCTCGACCTTGGACGATAATGGAGTCTCTGCAGAAGTGGGCTAGTGTTTTACGGGAGCACATTGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CAA 90 bp TGTTGCTTCATTAGGAACACCTGCTCATCCTCCGCTGCCAACTCTTaGTCATGGACCAGCTTTCTCACAGGCGGCTTTACAATAAAATCT +
Preference number: 6 (lower is better)
Translates to: CCFIRNTCSSSAANS*SWTSFLTGGFTIKS
Trigger: AGATTTTATTGTAAAGCCGCCTGTGAGAAAGCTGGTCCATGACAAAGAGTTGGCAGCGGAGGATGAGCAGGTGTTCCTAATGAAGCAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS TCA 72 bp AACAAAAATGACCAGGGTCTCCCGCAGAGACTCAGCTaGAACTGCAAATTTCAGCAGGCCTTTATGGTAGAG +
Preference number: 6 (lower is better)
Translates to: NKNDQGLPQRLS*NCKFQQAFMVE
Trigger: CTCTACCATAAAGGCCTGCTGAAATTTGCAGTTTCAGCTGAGTCTCTGCGGGAGACCCTGGTCATTTTTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS GCA 72 bp CTTTATGGTAGAGGTCTCCATCTAAAATCCACACATTaGAGCGTGTGTGATCGTCCCGGTCCTCATCATGAA +
Preference number: 6 (lower is better)
Translates to: LYGRGLHLKSTH*SVCDRPGPHHE
Trigger: TTCATGATGAGGACCGGGACGATCACACACGCTGCAATGTGTGGATTTTAGATGGAGACCTCTACCATAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CAA 90 bp TCTCTGTGGGGAACCCTGACAACCTTCTTCAGGCTCGATATAATCTaGAAACTCTTTCATAAATTTCCGTTCCAGATCCCGCATCTCCTC +
Preference number: 6 (lower is better)
Translates to: SLWGTLTTFFRLDII*KLFHKFPFQIPHLL
Trigger: GAGGAGATGCGGGATCTGGAACGGAAATTTATGAAAGAGTTTCAAGATTATATCGAGCCTGAAGAAGGTTGTCAGGGTTCCCCACAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS GCA 72 bp CAGACTATTGAAGAAGCTGGCCAATACCCCTTCACTTaGCGCATTATTTTTGATGTTTGGATCTGGCTTCTT +
Preference number: 6 (lower is better)
Translates to: QTIEEAGQYPFT*RIIFDVWIWLL
Trigger: AAGAAGCCAGATCCAAACATCAAAAATAATGCGGCAAGTGAAGGGGTATTGGCCAGCTTCTTCAATAGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2
CDS CAA 72 bp GGAACCCTGACAACCTTCTTCAGGCTCGATATAATCTaGAAACTCTTTCATAAATTTCCGTTCCAGATCCCG +
Preference number: 6 (lower is better)
Translates to: GTLTTFFRLDII*KLFHKFPFQIP
Trigger: CGGGATCTGGAACGGAAATTTATGAAAGAGTTTCAAGATTATATCGAGCCTGAAGAAGGTTGTCAGGGTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041769.8
ENSMUST00000212230.2
ENSMUST00000212654.2