RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DYNC1LI1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032435

Ensembl transcript IDs: ENSMUST00000047404.7

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTaGTTAAAGGAGCATAGCATCTTGGCCAGTAGTTCTGGTCCACTT +
Preference number: 1 (lower is better)
Translates to: NLSISHPRVVCFLSS*LKEHSILASSSGPL
Trigger: AAGTGGACCAGAACTACTGGCCAAGATGCTATGCTCCTTTAATCAAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR TCA 90 bp TTCTCAGCACACCTCAGGTGCCATACACATCTATTGGTCGGTGTGTaGAATCTGACAACTGACCAGTCTTCTTCAGAAAAACATGGTATC +
Preference number: 1 (lower is better)
Translates to: FSAHLRCHTHLLVGV*NLTTDQSSSEKHGI
Trigger: GATACCATGTTTTTCTGAAGAAGACTGGTCAGTTGTCAGATTTCACACACCGACCAATAGATGTGTATGGCACCTGAGGTGTGCTGAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR-3UTR CCA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGAATCGTAGTTCCAACTTaGAAGGGCAGGGCAGAGGCA +
Preference number: 2 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGIVVPT*KGRAEA
Trigger: TGCCTCTGCCCTGCCCTTCCAAGTTGGAACTACGAT...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR-3UTR TCA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGCCTGGTCTACAAAGTaGGTTCTGGGACAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNAWSTK*VLGQPG
Trigger: CCCTGGCTGTCCCAGAACTCACTTTGTAGACCAGGC...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR CAA 90 bp TTTTGCAGAATGGCAATGCAAACAGTTATTCTACATAATGTAAAATaGTCTTTCTTAGCCGGTCCTGGTGGCGCACACCGGAGGCAGAGG +
Preference number: 2 (lower is better)
Translates to: FCRMAMQTVILHNVK*SFLAGPGGAHRRQR
Trigger: CCTCTGCCTCCGGTGTGCGCCACCAGGACCGGCTAAGAAAGACAATTTTACATTATGTAGAATAACTGTTTGCATTGCCATTCTGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR-3UTR GCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTAAGTACGTATTTTTCTaGCCTTCCCTAAATGTTCCT +
Preference number: 2 (lower is better)
Translates to: VLITSASLTLGWCAFFLLKYVFF*PSLNVP
Trigger: AGGAACATTTAGGGAAGGGCAGAAAAATACGTACTT...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR-3UTR CCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTCTTCATTTTGCAGAATaGCAATGCAAACAGTTATTC +
Preference number: 2 (lower is better)
Translates to: VLITSASLTLGWCAFFLLLHFAE*QCKQLF
Trigger: GAATAACTGTTTGCATTGCCATTCTGCAAAATGAAG...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR-3UTR TCA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACATTACCCAGAAGAATaGACAAATGGCTTTGTTTGG +
Preference number: 2 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLHYPEE*TNGFVW
Trigger: CCAAACAAAGCCATTTGTTCATTCTTCTGGGTAATG...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR CCA 72 bp CTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTaGGAAAGAGGATCGCCTAGTCCTACTGCAGTCTTA +
Preference number: 3 (lower is better)
Translates to: LPFPKCSCWLTA*ERGSPSPTAVL
Trigger: TAAGACTGCAGTAGGACTAGGCGATCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR-3UTR CAA 90 bp CTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCCATCGTAGTTCCAACTaGGAAGGGCAGGGCAGAGGC +
Preference number: 3 (lower is better)
Translates to: LPKVRIFLPFPKCSCWLTHRSSN*EGQGRG
Trigger: GCCTCTGCCCTGCCCTTCCAAGTTGGAACTACGATG...GGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR CCA 72 bp GTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTaGCTTACCGCCTGGGAAAGAGGATCGCCTAGTCCT +
Preference number: 3 (lower is better)
Translates to: VRIFLPFPKCSC*LTAWERGSPSP
Trigger: AGGACTAGGCGATCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR TCA 72 bp ATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTaGTTAAAGGAGCATAGCATCTTGGCCAGTAGTTCT +
Preference number: 3 (lower is better)
Translates to: ISHPRVVCFLSS*LKEHSILASSS
Trigger: AGAACTACTGGCCAAGATGCTATGCTCCTTTAATCAAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR GCA 72 bp TCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTaGCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCT +
Preference number: 3 (lower is better)
Translates to: SESVNCQKYVFF*PSLNVPVGLPP
Trigger: AGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR TCA 72 bp CACCTCAGGTGCCATACACATCTATTGGTCGGTGTGTaGAATCTGACAACTGACCAGTCTTCTTCAGAAAAA +
Preference number: 3 (lower is better)
Translates to: HLRCHTHLLVGV*NLTTDQSSSEK
Trigger: TTTTTCTGAAGAAGACTGGTCAGTTGTCAGATTTCACACACCGACCAATAGATGTGTATGGCACCTGAGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR TCA 72 bp GGTGCCATACACATCTATTGGTCGGTGTGTGAAATCTaGCAACTGACCAGTCTTCTTCAGAAAAACATGGTA +
Preference number: 3 (lower is better)
Translates to: GAIHIYWSVCEI*QLTSLLQKNMV
Trigger: TACCATGTTTTTCTGAAGAAGACTGGTCAGTTGTCAGATTTCACACACCGACCAATAGATGTGTATGGCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR GCA 72 bp TATATACACACACATATATATATATGTATAGACAACTaGAAAGCCAGTTCTCCCTTCCGTGCTCATAACCTC +
Preference number: 3 (lower is better)
Translates to: YIHTHIYICIDN*KASSPFRAHNL
Trigger: GAGGTTATGAGCACGGAAGGGAGAACTGGCTTTGCAGTTGTCTATACATATATATATATGTGTGTGTATATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR-3UTR CAA 90 bp GATTGGAATAGTCTTAGACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTCTACATAATGTAAAATaGTCTTTCTTAGCCGGTCCT +
Preference number: 3 (lower is better)
Translates to: DWNSLRLLSQSTAKSTYFLHNVK*SFLAGP
Trigger: AGGACCGGCTAAGAAAGACAATTTTACATTATGTAG...AAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGTCTAAGACTATTCCAATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
3UTR CAA 72 bp AGGAGCATAGCATCTTGGCCAGTAGTTCTGGTCCACTaGATGGTGGCACATGGGATCACGGAGTGTGAGCCT +
Preference number: 4 (lower is better)
Translates to: RSIASWPVVLVH*MVAHGITECEP
Trigger: AGGCTCACACTCCGTGATCCCATGTGCCACCATCAAGTGGACCAGAACTACTGGCCAAGATGCTATGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTTCCAGGGACTCTTGGTaGTGCATCCACAGGCCTTCC +
Preference number: 4 (lower is better)
Translates to: VLITSASLTLGWCAFFLLSRDSW*CIHRPS
Trigger: GGAAGGCCTGTGGATGCATCACCAAGAGTCCCTGGA...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGAGTGTGTGAGTGTGTCTaGACCCAGGGGCAGGACAAC +
Preference number: 4 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGVCECV*TQGQDN
Trigger: GTTGTCCTGCCCCTGGGTGCAGACACACTCACACAC...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTCACAGGCCTTCCAGCTaGAGTTGGAGGTTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: VLITSASLTLGWCAFFLLHRPSS*SWRLLC
Trigger: GCAAAGCAACCTCCAACTGCAGCTGGAAGGCCTGTG...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp CAGAGGCAAGCTGTCATTACCCAGAAGAATGAACAAATGGCTTTGTTTGGTATCACTGGGGCTTGCACCTaGAGCCCCTCCTCCAGGACT +
Preference number: 4 (lower is better)
Translates to: QRQAVITQKNEQMALFGITGACT*SPSSRT
Trigger: AGTCCTGGAGGAGGGGCTGCAGGTGCAAGCCCCAGT...GATACCAAACAAAGCCATTTGTTCATTCTTCTGGGTAATGACAGCTTGCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CCA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGATGGATCCAGCAGGGATaGGGGACACACTGGCAACAT +
Preference number: 4 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGWIQQG*GTHWQH
Trigger: ATGTTGCCAGTGTGTCCCCCATCCCTGCTGGATCCA...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CCA 90 bp GATTGGAATAGTCTTAGACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCCCGGTCGGGAGCTTaGAGCGCGAGCGCGTGGAGA +
Preference number: 4 (lower is better)
Translates to: DWNSLRLLSQSTAKSTYFSRSGA*SASAWR
Trigger: TCTCCACGCGCTCGCGCTCCAAGCTCCCGACCGGGA...AAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGTCTAAGACTATTCCAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATCCAGTGGTTCTTCGCTaGGGGGAGGCTGGGAAGTCT +
Preference number: 4 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNPVVLR*GEAGKS
Trigger: AGACTTCCCAGCCTCCCCTCAGCGAAGAACCACTGG...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGACTGTCTAGCTCTGCGTaGACATCTGAAAGCACAGGT +
Preference number: 4 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGLSSSA*TSESTG
Trigger: ACCTGTGCTTTCAGATGTTCACGCAGAGCTAGACAG...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACAGGACCAAAGGTTCTaGCCGTCCTCATCGTCGCCC +
Preference number: 4 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLQDQRF*PSSSSP
Trigger: GGGCGACGATGAGGACGGGCAGAACCTTTGGTCCTG...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp GATTGGAATAGTCTTAGACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTGGCCCAGGTTGTGTGTaGGTGTGTCTGCACCCAGGG +
Preference number: 4 (lower is better)
Translates to: DWNSLRLLSQSTAKSTYFGPGCV*VCLHPG
Trigger: CCCTGGGTGCAGACACACTCACACACAACCTGGGCC...AAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGTCTAAGACTATTCCAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTACTGGCAACATTGGATaGCACAGATCTGTTTGGTGT +
Preference number: 4 (lower is better)
Translates to: VLITSASLTLGWCAFFLLTGNIG*HRSVWC
Trigger: ACACCAAACAGATCTGTGTCATCCAATGTTGCCAGT...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGATACTCAACAGACTGTTaGAGAAATTCGCCAGGACCC +
Preference number: 4 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGYSTDC*RNSPGP
Trigger: GGGTCCTGGCGAATTTCTTCAACAGTCTGTTGAGTA...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTAGCAGTCCAAGGCTTTaGCATATCAACAACCAACAT +
Preference number: 4 (lower is better)
Translates to: VLITSASLTLGWCAFFLLSSPRL*HINNQH
Trigger: ATGTTGGTTGTTGATATGTCAAAGCCTTGGACTGCT...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTCTTGTTCTCTTTTACTaGAGTGTAAATCAGCGCTGC +
Preference number: 4 (lower is better)
Translates to: VLITSASLTLGWCAFFLLLVLFY*SVNQRC
Trigger: GCAGCGCTGATTTACACTTCAGTAAAAGAGAACAAG...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGATACTCCTCTATGCCCTaGATTCTTCTTATGAGGCTT +
Preference number: 4 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGYSSMP*ILLMRL
Trigger: AAGCCTCATAAGAAGAATTCAGGGCATAGAGGAGTA...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CCA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTTTCATCAGAAACACTTaGTCATCTTCTGCCATGATC +
Preference number: 4 (lower is better)
Translates to: VLITSASLTLGWCAFFLLFIRNT*SSSAMI
Trigger: GATCATGGCAGAAGATGACCAAGTGTTTCTGATGAA...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CCA 90 bp CAGAGGCAAGCTGTCATTACCCAGAAGAATGAACAAATGGCTTTGTTTGGTATCGAAAGCACAGGTTTCTaGCCTGACTTTTTGGCGGAC +
Preference number: 4 (lower is better)
Translates to: QRQAVITQKNEQMALFGIESTGF*PDFLAD
Trigger: GTCCGCCAAAAAGTCAGGCCAGAAACCTGTGCTTTC...GATACCAAACAAAGCCATTTGTTCATTCTTCTGGGTAATGACAGCTTGCCTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp ACAGTTATTCTACATAATGTAAAATTGTCTTTCTTAGCCGGTCCTGGTGGCGCAGGTCATCTTCTGCCATaGTCTCCTTCTCATGCACGA +
Preference number: 4 (lower is better)
Translates to: TVILHNVKLSFLAGPGGAGHLLP*SPSHAR
Trigger: TCGTGCATGAGAAGGAGATCATGGCAGAAGATGACC...TGCGCCACCAGGACCGGCTAAGAAAGACAATTTTACATTATGTAGAATAACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp CTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCCACTTGGTCATCTTCTaGCATGATCTCCTTCTCATG +
Preference number: 4 (lower is better)
Translates to: LPKVRIFLPFPKCSCWLTHLVIF*HDLLLM
Trigger: CATGAGAAGGAGATCATGGCAGAAGATGACCAAGTG...GGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp CTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCTGCAGTTGGAGGTTaGTTTGCTAAAAGAGACTGT +
Preference number: 4 (lower is better)
Translates to: LPKVRIFLPFPKCSCWLTAAVGG*FAKRDC
Trigger: ACAGTCTCTTTTAGCAAAGCAACCTCCAACTGCAGC...GGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCTGAATTCTTCTTATaGGGCTTGTCTTCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLPEFFL*GLSSQL
Trigger: GAGCTGGGAAGACAAGCCTCATAAGAAGAATTCAGG...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACATCCAGAGAGAACTTaGGTAGCCCTTTGTGGTACA +
Preference number: 4 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLHPERT*VALCGT
Trigger: TGTACCACAAAGGGCTACTCAAGTTCTCTCTGGATG...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGATCTCTAATCAACTTCTaGTCCATTTCCTTCATCTCT +
Preference number: 4 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGSLINF*SISFIS
Trigger: AGAGATGAAGGAAATGGAGCAGAAGTTGATTAGAGA...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp ACAGTTATTCTACATAATGTAAAATTGTCTTTCTTAGCCGGTCCTGGTGGCGCATCCCTGTCTTCGTCGTaGACATTTAAGTACAGGTAC +
Preference number: 4 (lower is better)
Translates to: TVILHNVKLSFLAGPGGASLSSS*TFKYRY
Trigger: GTACCTGTACTTAAATGTGCACGACGAAGACAGGGA...TGCGCCACCAGGACCGGCTAAGAAAGACAATTTTACATTATGTAGAATAACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CCA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATATTATCCCACCCTGCTaGAATAAACACTGCGTCCTT +
Preference number: 4 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNIIPPC*NKHCVL
Trigger: AAGGACGCAGTGTTTATTCCAGCAGGGTGGGATAAT...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR GCA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTAATGATCTCCTTCTCATaGACGAACTTTCTGACAGGA +
Preference number: 4 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLMISFS*TNFLTG
Trigger: TCCTGTCAGAAAGTTCGTGCATGAGAAGGAGATCAT...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR TCA 90 bp GATTGGAATAGTCTTAGACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTACATTACATCTTGTTTaGTCATCCCTGTCTTCGTCG +
Preference number: 4 (lower is better)
Translates to: DWNSLRLLSQSTAKSTYFTLHLV*SSLSSS
Trigger: CGACGAAGACAGGGATGATCAAACAAGATGTAATGT...AAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGTCTAAGACTATTCCAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CCA 90 bp GATTGGAATAGTCTTAGACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTTGAGTAGCCCTTTGTaGTACAGATCTCCATCTAAG +
Preference number: 4 (lower is better)
Translates to: DWNSLRLLSQSTAKSTYFLSSPL*YRSPSK
Trigger: CTTAGATGGAGATCTGTACCACAAAGGGCTACTCAA...AAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGTCTAAGACTATTCCAATC
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CCA 90 bp CATCGTCGCCCGCCGCGGGGCCGCCGCTGCCCGACGCTAGCTCGTTaGCTAGGGGTCCGCTGGCGTAGGTCGAGGCTAGCCCGGGTGGAG +
Preference number: 5 (lower is better)
Translates to: HRRPPRGRRCPTLAR*LGVRWRRSRLARVE
Trigger: CTCCACCCGGGCTAGCCTCGACCTACGCCAGCGGACCCCTAGCCAACGAGCTAGCGTCGGGCAGCGGCGGCCCCGCGGCGGGCGACGATG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CCA 90 bp CGGGGCCGCCGCTGCCCGACGCTAGCTCGTTGGCTAGGGGTCCGCTaGCGTAGGTCGAGGCTAGCCCGGGTGGAGATGAACCGAACGAGC +
Preference number: 5 (lower is better)
Translates to: RGRRCPTLARWLGVR*RRSRLARVEMNRTS
Trigger: GCTCGTTCGGTTCATCTCCACCCGGGCTAGCCTCGACCTACGCCAGCGGACCCCTAGCCAACGAGCTAGCGTCGGGCAGCGGCGGCCCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp GATTGGAATAGTCTTAGACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTTCCCGGTCGGGAGCTaGGAGCGCGAGCGCGTGGAG +
Preference number: 5 (lower is better)
Translates to: DWNSLRLLSQSTAKSTYFFPVGS*ERERVE
Trigger: CTCCACGCGCTCGCGCTCCAAGCTCCCGACCGGGAA...AAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGTCTAAGACTATTCCAATC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTGGCAAACTGGGGCTaGCACCTGCAGCCCCTCCTC +
Preference number: 5 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNVANWG*HLQPLL
Trigger: GAGGAGGGGCTGCAGGTGCAAGCCCCAGTTTGCCAC...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGATTCTGGCCTGACTTTTaGGCGGACGGTGGCAAACTG +
Preference number: 5 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGFWPDF*ADGGKL
Trigger: CAGTTTGCCACCGTCCGCCAAAAAGTCAGGCCAGAA...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 90 bp GGAGAAACAGAAGCAGGTTTCCGTGTGATTCTGTCTAGCTCTGCGTaGACATCTGAAAGCACAGGTTTCTGGCCTGACTTTTTGGCGGAC +
Preference number: 5 (lower is better)
Translates to: GETEAGFRVILSSSA*TSESTGFWPDFLAD
Trigger: GTCCGCCAAAAAGTCAGGCCAGAAACCTGTGCTTTCAGATGTTCACGCAGAGCTAGACAGAATCACACGGAAACCTGCTTCTGTTTCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTGCATCCAGAGAGAACTaGAGTAGCCCTTTGTGGTAC +
Preference number: 5 (lower is better)
Translates to: VLITSASLTLGWCAFFLLASREN*SSPLWY
Trigger: GTACCACAAAGGGCTACTCAAGTTCTCTCTGGATGC...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 90 bp TACAGGTACTCCAGTCCTCTTCCCTTCTTGTACTCCTCTATGCCCTaGATTCTTCTTATGAGGCTTGTCTTCCCAGCTCCATCTTCACCC +
Preference number: 5 (lower is better)
Translates to: YRYSSPLPFLYSSMP*ILLMRLVFPAPSSP
Trigger: GGGTGAAGATGGAGCTGGGAAGACAAGCCTCATAAGAAGAATTCAGGGCATAGAGGAGTACAAGAAGGGAAGAGGACTGGAGTACCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS GCA 90 bp ACTCTTGGTGATGCATCCACAGGCCTTCCAGCTGCAGTTGGAGGTTaGTTTGCTAAAAGAGACTGTAGCTTCATCAGAAACACTTGGTCA +
Preference number: 5 (lower is better)
Translates to: TLGDASTGLPAAVGG*FAKRDCSFIRNTWS
Trigger: TGACCAAGTGTTTCTGATGAAGCTACAGTCTCTTTTAGCAAAGCAACCTCCAACTGCAGCTGGAAGGCCTGTGGATGCATCACCAAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp GTGCTCATAACCTCAGCATCTCTCACCCTCGGGTGGTGTGCTTTCTTTCTTCTTAAGCAGTCCAAGGCTTaGACATATCAACAACCAACA +
Preference number: 5 (lower is better)
Translates to: VLITSASLTLGWCAFFLLKQSKA*TYQQPT
Trigger: TGTTGGTTGTTGATATGTCAAAGCCTTGGACTGCTT...AAGAAGAAAGAAAGCACACCACCCGAGGGTGAGAGATGCTGAGGTTATGAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTAACTGGTAGGCCCAGGTaGTGTGTGAGTGTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLTGRPR*CVSVSA
Trigger: TGCAGACACACTCACACACAACCTGGGCCTACCAGT...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTAGCCTTCCAGCTGCAGTaGGAGGTTGCTTTGCTAAAA +
Preference number: 5 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLAFQLQ*EVALLK
Trigger: TTTTAGCAAAGCAACCTCCAACTGCAGCTGGAAGGC...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp ATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACCGCCTGGGAAAGAGGATCCATACATTACATCTaGTTTGATCATCCCTGTCTT +
Preference number: 5 (lower is better)
Translates to: IFLPFPKCSCWLTAWERGSIHYI*FDHPCL
Trigger: AAGACAGGGATGATCAAACAAGATGTAATGTATGGA...TCCTCTTTCCCAGGCGGTAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCTCTCACCACACTaGCCCATTTCTGTAAGGAAT +
Preference number: 5 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNVLSPH*PISVRN
Trigger: ATTCCTTACAGAAATGGGCAAGTGTGGTGAGAGAAC...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTACAGTTGGAGGTTGCTTaGCTAAAAGAGACTGTAGCT +
Preference number: 5 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLQLEVA*LKETVA
Trigger: AGCTACAGTCTCTTTTAGCAAAGCAACCTCCAACTG...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGACACACTGGCAACATaGGATGACACAGATCTGTTT +
Preference number: 5 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNDTLAT*DDTDLF
Trigger: AAACAGATCTGTGTCATCCAATGTTGCCAGTGTGTC...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATTTACTCAACAGACTGTaGAAGAAATTCGCCAGGACC +
Preference number: 5 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNLLNRL*KKFART
Trigger: GGTCCTGGCGAATTTCTTCAACAGTCTGTTGAGTAA...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp ACTTCTGAGTCAGTCAACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATCTTCATCAGAAACACTaGGTCATCTTCTGCCATGAT +
Preference number: 5 (lower is better)
Translates to: TSESVNCQKYVFFCPSLNLHQKH*VIFCHD
Trigger: ATCATGGCAGAAGATGACCAAGTGTTTCTGATGAAG...ATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTTGACTGACTCAGAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS-3UTR CAA 90 bp AACTGCCAAAAGTACGTATTTTTCTGCCCTTCCCTAAATGTTCCTGTTGGCTTATTTCTGACAGGAGGTTaGGTTATGATGTCTTCAAAA +
Preference number: 5 (lower is better)
Translates to: NCQKYVFFCPSLNVPVGLFLTGG*VMMSSK
Trigger: TTTTGAAGACATCATAACCAAACCTCCTGTCAGAAA...TAAGCCAACAGGAACATTTAGGGAAGGGCAGAAAAATACGTACTTTTGGCAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS GCA 72 bp GCCCGTCCTCATCGTCGCCCGCCGCGGGGCCGCCGCTaGCCGACGCTAGCTCGTTGGCTAGGGGTCCGCTGG +
Preference number: 6 (lower is better)
Translates to: ARPHRRPPRGRR*PTLARWLGVRW
Trigger: CCAGCGGACCCCTAGCCAACGAGCTAGCGTCGGGCAGCGGCGGCCCCGCGGCGGGCGACGATGAGGACGGGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CCA 72 bp CCGCCGCGGGGCCGCCGCTGCCCGACGCTAGCTCGTTaGCTAGGGGTCCGCTGGCGTAGGTCGAGGCTAGCC +
Preference number: 6 (lower is better)
Translates to: PPRGRRCPTLAR*LGVRWRRSRLA
Trigger: GGCTAGCCTCGACCTACGCCAGCGGACCCCTAGCCAACGAGCTAGCGTCGGGCAGCGGCGGCCCCGCGGCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CCA 72 bp CGCTGCCCGACGCTAGCTCGTTGGCTAGGGGTCCGCTaGCGTAGGTCGAGGCTAGCCCGGGTGGAGATGAAC +
Preference number: 6 (lower is better)
Translates to: RCPTLARWLGVR*RRSRLARVEMN
Trigger: GTTCATCTCCACCCGGGCTAGCCTCGACCTACGCCAGCGGACCCCTAGCCAACGAGCTAGCGTCGGGCAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CAA 72 bp CACTTCGTACAGACTACGAGCACTGGTAGGCCCAGGTaGTGTGTGAGTGTGTCTGCACCCAGGGGCAGGACA +
Preference number: 6 (lower is better)
Translates to: HFVQTTSTGRPR*CVSVSAPRGRT
Trigger: TGTCCTGCCCCTGGGTGCAGACACACTCACACACAACCTGGGCCTACCAGTGCTCGTAGTCTGTACGAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 72 bp TACAGACTACGAGCACTGGTAGGCCCAGGTTGTGTGTaGGTGTGTCTGCACCCAGGGGCAGGACAACACTGT +
Preference number: 6 (lower is better)
Translates to: YRLRALVGPGCV*VCLHPGAGQHC
Trigger: ACAGTGTTGTCCTGCCCCTGGGTGCAGACACACTCACACACAACCTGGGCCTACCAGTGCTCGTAGTCTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CAA 72 bp ATCTGTTTGGTGTTCGAGGGGAGCCTCCAGGGACTCTaGGTGATGCATCCACAGGCCTTCCAGCTGCAGTTG +
Preference number: 6 (lower is better)
Translates to: ICLVFEGSLQGL*VMHPQAFQLQL
Trigger: CAACTGCAGCTGGAAGGCCTGTGGATGCATCACCAAGAGTCCCTGGAGGCTCCCCTCGAACACCAAACAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CAA 90 bp CAGGGATGGGGGACACACTGGCAACATTGGATGACACAGATCTGTTaGGTGTTCGAGGGGAGCCTCCAGGGACTCTTGGTGATGCATCCA +
Preference number: 6 (lower is better)
Translates to: QGWGTHWQHWMTQIC*VFEGSLQGLLVMHP
Trigger: TGGATGCATCACCAAGAGTCCCTGGAGGCTCCCCTCGAACACCAAACAGATCTGTGTCATCCAATGTTGCCAGTGTGTCCCCCATCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CCA 72 bp GAACATCTGAAAGCACAGGTTTCTGGCCTGACTTTTTaGCGGACGGTGGCAAACTGGGGCTTGCACCTGCAG +
Preference number: 6 (lower is better)
Translates to: EHLKAQVSGLTF*RTVANWGLHLQ
Trigger: CTGCAGGTGCAAGCCCCAGTTTGCCACCGTCCGCCAAAAAGTCAGGCCAGAAACCTGTGCTTTCAGATGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CAA 72 bp GGGACACACTGGCAACATTGGATGACACAGATCTGTTaGGTGTTCGAGGGGAGCCTCCAGGGACTCTTGGTG +
Preference number: 6 (lower is better)
Translates to: GTHWQHWMTQIC*VFEGSLQGLLV
Trigger: CACCAAGAGTCCCTGGAGGCTCCCCTCGAACACCAAACAGATCTGTGTCATCCAATGTTGCCAGTGTGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CAA 90 bp CTCCAGGGACTCTTGGTGATGCATCCACAGGCCTTCCAGCTGCAGTaGGAGGTTGCTTTGCTAAAAGAGACTGTAGCTTCATCAGAAACA +
Preference number: 6 (lower is better)
Translates to: LQGLLVMHPQAFQLQ*EVALLKETVASSET
Trigger: TGTTTCTGATGAAGCTACAGTCTCTTTTAGCAAAGCAACCTCCAACTGCAGCTGGAAGGCCTGTGGATGCATCACCAAGAGTCCCTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CAA 72 bp CTCTTGGTGATGCATCCACAGGCCTTCCAGCTGCAGTaGGAGGTTGCTTTGCTAAAAGAGACTGTAGCTTCA +
Preference number: 6 (lower is better)
Translates to: LLVMHPQAFQLQ*EVALLKETVAS
Trigger: TGAAGCTACAGTCTCTTTTAGCAAAGCAACCTCCAACTGCAGCTGGAAGGCCTGTGGATGCATCACCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 72 bp CCTTCTTGTACTCCTCTATGCCCTGAATTCTTCTTATaGGGCTTGTCTTCCCAGCTCCATCTTCACCCAGCA +
Preference number: 6 (lower is better)
Translates to: PSCTPLCPEFFL*GLSSQLHLHPA
Trigger: TGCTGGGTGAAGATGGAGCTGGGAAGACAAGCCTCATAAGAAGAATTCAGGGCATAGAGGAGTACAAGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 72 bp TCCAGTCCTCTTCCCTTCTTGTACTCCTCTATGCCCTaGATTCTTCTTATGAGGCTTGTCTTCCCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: SSPLPFLYSSMP*ILLMRLVFPAP
Trigger: TGGAGCTGGGAAGACAAGCCTCATAAGAAGAATTCAGGGCATAGAGGAGTACAAGAAGGGAAGAGGACTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 72 bp GAGTGTCCCTCAGAGAAAGGGCATCCAGAGAGAACTTaGGTAGCCCTTTGTGGTACAGATCTCCATCTAAGA +
Preference number: 6 (lower is better)
Translates to: ECPSEKGHPERT*VALCGTDLHLR
Trigger: TCTTAGATGGAGATCTGTACCACAAAGGGCTACTCAAGTTCTCTCTGGATGCCCTTTCTCTGAGGGACACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 72 bp AAGCAGTCCAAGGCTTTGACATATCAACAACCAACATaGCCAGAGTGTCCCTCAGAGAAAGGGCATCCAGAG +
Preference number: 6 (lower is better)
Translates to: KQSKALTYQQPT*PECPSEKGHPE
Trigger: CTCTGGATGCCCTTTCTCTGAGGGACACTCTGGTCATGTTGGTTGTTGATATGTCAAAGCCTTGGACTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS TCA 72 bp GAAGCAGGTTTCCGTGTGATTCTGTCTAGCTCTGCGTaGACATCTGAAAGCACAGGTTTCTGGCCTGACTTT +
Preference number: 6 (lower is better)
Translates to: EAGFRVILSSSA*TSESTGFWPDF
Trigger: AAAGTCAGGCCAGAAACCTGTGCTTTCAGATGTTCACGCAGAGCTAGACAGAATCACACGGAAACCTGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS GCA 72 bp GATGCATCCACAGGCCTTCCAGCTGCAGTTGGAGGTTaGTTTGCTAAAAGAGACTGTAGCTTCATCAGAAAC +
Preference number: 6 (lower is better)
Translates to: DASTGLPAAVGG*FAKRDCSFIRN
Trigger: GTTTCTGATGAAGCTACAGTCTCTTTTAGCAAAGCAACCTCCAACTGCAGCTGGAAGGCCTGTGGATGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7
CDS CAA 72 bp AGAGTGTCCCTCAGAGAAAGGGCATCCAGAGAGAACTaGAGTAGCCCTTTGTGGTACAGATCTCCATCTAAG +
Preference number: 6 (lower is better)
Translates to: RVSLRERASREN*SSPLWYRSPSK
Trigger: CTTAGATGGAGATCTGTACCACAAAGGGCTACTCAAGTTCTCTCTGGATGCCCTTTCTCTGAGGGACACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047404.7