RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DYNAP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024512

Ensembl transcript IDs: ENSMUST00000025390.4

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAATACATGGACTCTATACCATGTTACCATCCCTAGATAGTCAGTaGCCACCACGTAGACCTGCATCTCTTGTCCCCTCTATGATGCTC +
Preference number: 1 (lower is better)
Translates to: TIHGLYTMLPSLDSQ*PPRRPASLVPSMML
Trigger: GAGCATCATAGAGGGGACAAGAGATGCAGGTCTACGTGGTGGTCACTGACTATCTAGGGATGGTAACATGGTATAGAGTCCATGTATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR CCA 90 bp ATGATTAACTTAGCTGGCTTGGTCCCTTTTCATTGTCCTCTGACATaGAAAAAGTCTCAGAATGAGAGAATTTCCAGAACATGGCAGGTA +
Preference number: 1 (lower is better)
Translates to: MINLAGLVPFHCPLT*KKSQNERISRTWQV
Trigger: TACCTGCCATGTTCTGGAAATTCTCTCATTCTGAGACTTTTTCCATGTCAGAGGACAATGAAAAGGGACCAAGCCAGCTAAGTTAATCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR CCA 90 bp CCTCTGACATGGAAAAAGTCTCAGAATGAGAGAATTTCCAGAACATaGCAGGTATTAATTAATCAATGCAAGACTATCACCACATGGAAA +
Preference number: 1 (lower is better)
Translates to: PLTWKKSQNERISRT*QVLINQCKTITTWK
Trigger: TTTCCATGTGGTGATAGTCTTGCATTGATTAATTAATACCTGCCATGTTCTGGAAATTCTCTCATTCTGAGACTTTTTCCATGTCAGAGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR-3UTR TCA 90 bp ACAAAAAGTCAGGTAGAGGACACCTCAACAAACCGAGACTCAGTGTCACAGGCTGAAAAAGTCTCAGAATaGGAGAATTTCCAGAACATG +
Preference number: 2 (lower is better)
Translates to: TKSQVEDTSTNRDSVSQAEKVSE*ENFQNM
Trigger: CATGTTCTGGAAATTCTCTCATTCTGAGACTTTTTC...AGCCTGTGACACTGAGTCTCGGTTTGTTGAGGTGTCCTCTACCTGACTTTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR-3UTR CCA 90 bp CATTGTCCTCTGACATGGAAAAAGTCTCAGAATGAGAGAATTTCCAGAACATGGGTGAGAATATTGATCTaGCTTGAGGACCGAGAGTTC +
Preference number: 2 (lower is better)
Translates to: HCPLTWKKSQNERISRTWVRILI*LEDREF
Trigger: GAACTCTCGGTCCTCAAGCCAGATCAATATTCTCAC...CCATGTTCTGGAAATTCTCTCATTCTGAGACTTTTTCCATGTCAGAGGACAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR GCA 72 bp AGACCTGCATCTCTTGTCCCCTCTATGATGCTCCTTTaGCACATGAACTCTCTTAAGGAGAGAAGTTGGAAA +
Preference number: 3 (lower is better)
Translates to: RPASLVPSMMLL*HMNSLKERSWK
Trigger: TTTCCAACTTCTCTCCTTAAGAGAGTTCATGTGGCAAAGGAGCATCATAGAGGGGACAAGAGATGCAGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR CCA 72 bp CGAAGACATACGCTATGGGATGTCATAGCAGGATCTTaGCTATGTCCCCTTTCTGTGAGAATATTGATCTGG +
Preference number: 3 (lower is better)
Translates to: RRHTLWDVIAGS*LCPLSVRILIW
Trigger: CCAGATCAATATTCTCACAGAAAGGGGACATAGCCAAGATCCTGCTATGACATCCCATAGCGTATGTCTTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR-3UTR CAA 90 bp ATGCCTCTGTCCTTTACAGTGTCCAACAATACATGGACTCTATACCATGTTACCATTAACTTAGCTGGCTaGGTCCCTTTTCATTGTCCT +
Preference number: 3 (lower is better)
Translates to: MPLSFTVSNNTWTLYHVTINLAG*VPFHCP
Trigger: AGGACAATGAAAAGGGACCAAGCCAGCTAAGTTAAT...GGTAACATGGTATAGAGTCCATGTATTGTTGGACACTGTAAAGGACAGAGGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR CCA 72 bp TTAGCTGGCTTGGTCCCTTTTCATTGTCCTCTGACATaGAAAAAGTCTCAGAATGAGAGAATTTCCAGAACA +
Preference number: 3 (lower is better)
Translates to: LAGLVPFHCPLT*KKSQNERISRT
Trigger: TGTTCTGGAAATTCTCTCATTCTGAGACTTTTTCCATGTCAGAGGACAATGAAAAGGGACCAAGCCAGCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR-3UTR CAA 90 bp TTAATCAATGCAAGACTATCACCACATGGAAAGCAGCATAGATTAGTAGAGAACCTTTCTGTGAGAATATaGATCTGGCTTGAGGACCGA +
Preference number: 3 (lower is better)
Translates to: LINARLSPHGKQHRLVENLSVRI*IWLEDR
Trigger: TCGGTCCTCAAGCCAGATCAATATTCTCACAGAAAG...GTTCTCTACTAATCTATGCTGCTTTCCATGTGGTGATAGTCTTGCATTGATTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR TCA 90 bp GATGTCATAGCAGGATCTTGGCTATGTCCCCTTTCTGTGAGAATATTGATCTGGCGGTTCTTCGTCACCTaGTGCAGCTCACATGTCACA +
Preference number: 4 (lower is better)
Translates to: DVIAGSWLCPLSVRILIWRFFVT*CSSHVT
Trigger: TGTGACATGTGAGCTGCATCAGGTGACGAAGAACCG...CCAGATCAATATTCTCACAGAAAGGGGACATAGCCAAGATCCTGCTATGACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR CCA 90 bp ACAAATAATGCCTCTGTCCTTTACAGTGTCCAACAATACATGGACTCTATACCAGAGGCACAGGGATCTTaGCAGGACCTTCCATCTGTG +
Preference number: 4 (lower is better)
Translates to: TNNASVLYSVQQYMDSIPEAQGS*QDLPSV
Trigger: CACAGATGGAAGGTCCTGCCAAGATCCCTGTGCCTC...TGGTATAGAGTCCATGTATTGTTGGACACTGTAAAGGACAGAGGCATTATTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR TCA 90 bp GAGTTCATAAGCAGAAACATGATTAACTTAGCTGGCTTGGTCCCTTTTCATTGTGATTGTGGTTGGAGATaGCGTAGAGGGAGAGGCACA +
Preference number: 4 (lower is better)
Translates to: EFISRNMINLAGLVPFHCDCGWR*RRGRGT
Trigger: TGTGCCTCTCCCTCTACGTCATCTCCAACCACAATC...ACAATGAAAAGGGACCAAGCCAGCTAAGTTAATCATGTTTCTGCTTATGAACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR TCA 90 bp CAAATAATGCCTCTGTCCTTTACAGTGTCCAACAATACATGGACTCTATACCATGGTGTCAGGTCTAGGTaGAGGGATTGTGGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: QIMPLSFTVSNNTWTLYHGVRSR*RDCGWR
Trigger: TCTCCAACCACAATCCCTTCACCTAGACCTGACACC...ATGGTATAGAGTCCATGTATTGTTGGACACTGTAAAGGACAGAGGCATTATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR GCA 90 bp CTGTCCTTTACAGTGTCCAACAATACATGGACTCTATACCATGTTACCATCCCTTCACATGGTGGGATCTaGAGTCACAGTGTGTTCCTT +
Preference number: 4 (lower is better)
Translates to: LSFTVSNNTWTLYHVTIPSHGGI*SHSVFL
Trigger: AAGGAACACACTGTGACTGCAGATCCCACCATGTGA...AGGGATGGTAACATGGTATAGAGTCCATGTATTGTTGGACACTGTAAAGGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
3UTR CAA 72 bp ACGAAGACATACGCTATGGGATGTCATAGCAGGATCTaGGCTATGTCCCCTTTCTGTGAGAATATTGATCTG +
Preference number: 4 (lower is better)
Translates to: TKTYAMGCHSRI*AMSPFCENIDL
Trigger: CAGATCAATATTCTCACAGAAAGGGGACATAGCCAAGATCCTGCTATGACATCCCATAGCGTATGTCTTCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR GCA 90 bp TCTATGATGCTCCTTTGCCACATGAACTCTCTTAAGGAGAGAAGTTGGAAAATTGGACTCCTTAATAACTaGTCTGCCACGTTTTGCTCA +
Preference number: 4 (lower is better)
Translates to: SMMLLCHMNSLKERSWKIGLLNN*SATFCS
Trigger: TGAGCAAAACGTGGCAGAGCAGTTATTAAGGAGTCC...AATTTTCCAACTTCTCTCCTTAAGAGAGTTCATGTGGCAAAGGAGCATCATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR TCA 90 bp AGAATTTCCAGAACATGGCAGGTATTAATTAATCAATGCAAGACTATCACCACAGACCTTCCATCTGTGTaGATAACAATGGTGGTATTG +
Preference number: 4 (lower is better)
Translates to: RISRTWQVLINQCKTITTDLPSV*ITMVVL
Trigger: CAATACCACCATTGTTATTCACACAGATGGAAGGTC...TGTGGTGATAGTCTTGCATTGATTAATTAATACCTGCCATGTTCTGGAAATTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR GCA 90 bp AGAACATGGCAGGTATTAATTAATCAATGCAAGACTATCACCACATGGAAAGCATGGTATTGTTGGAATTaGCAAAGGGGCCAAAGTAAA +
Preference number: 4 (lower is better)
Translates to: RTWQVLINQCKTITTWKAWYCWN*QRGQSK
Trigger: TTTACTTTGGCCCCTTTGGCAATTCCAACAATACCA...TGCTTTCCATGTGGTGATAGTCTTGCATTGATTAATTAATACCTGCCATGTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS TCA 90 bp CATATTAGGAATACTTTCCAGAGGGAACACCGGTTCTTCGTCACCTaGTGCAGCTCACATGTCACATGGTGGGATCTGCAGTCACAGTGT +
Preference number: 5 (lower is better)
Translates to: HIRNTFQREHRFFVT*CSSHVTWWDLQSQC
Trigger: ACACTGTGACTGCAGATCCCACCATGTGACATGTGAGCTGCATCAGGTGACGAAGAACCGGTGTTCCCTCTGGAAAGTATTCCTAATATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR CAA 90 bp CAGGCTAGACAAATAATGCCTCTGTCCTTTACAGTGTCCAACAATACATGGACTAGAGGCACAGGGATCTaGGCAGGACCTTCCATCTGT +
Preference number: 5 (lower is better)
Translates to: QARQIMPLSFTVSNNTWTRGTGI*AGPSIC
Trigger: ACAGATGGAAGGTCCTGCCAAGATCCCTGTGCCTCT...AGTCCATGTATTGTTGGACACTGTAAAGGACAGAGGCATTATTTGTCTAGCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR CAA 90 bp CAGGCTAGACAAATAATGCCTCTGTCCTTTACAGTGTCCAACAATACATGGACTAACATTCAAGGTGTATaGCTGCTGCTTTCTAACCAT +
Preference number: 5 (lower is better)
Translates to: QARQIMPLSFTVSNNTWTNIQGV*LLLSNH
Trigger: ATGGTTAGAAAGCAGCAGCAATACACCTTGAATGTT...AGTCCATGTATTGTTGGACACTGTAAAGGACAGAGGCATTATTTGTCTAGCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR CAA 90 bp AGAACATGGCAGGTATTAATTAATCAATGCAAGACTATCACCACATGGAAAGCAACAATGGTGGTATTGTaGGAATTGCCAAAGGGGCCA +
Preference number: 5 (lower is better)
Translates to: RTWQVLINQCKTITTWKATMVVL*ELPKGP
Trigger: TGGCCCCTTTGGCAATTCCAACAATACCACCATTGT...TGCTTTCCATGTGGTGATAGTCTTGCATTGATTAATTAATACCTGCCATGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS-3UTR CAA 90 bp CATTGTCCTCTGACATGGAAAAAGTCTCAGAATGAGAGAATTTCCAGAACATGGATAACAATGGTGGTATaGTTGGAATTGCCAAAGGGG +
Preference number: 5 (lower is better)
Translates to: HCPLTWKKSQNERISRTWITMVV*LELPKG
Trigger: CCCCTTTGGCAATTCCAACAATACCACCATTGTTAT...CCATGTTCTGGAAATTCTCTCATTCTGAGACTTTTTCCATGTCAGAGGACAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS TCA 72 bp AATACTTTCCAGAGGGAACACCGGTTCTTCGTCACCTaGTGCAGCTCACATGTCACATGGTGGGATCTGCAG +
Preference number: 6 (lower is better)
Translates to: NTFQREHRFFVT*CSSHVTWWDLQ
Trigger: CTGCAGATCCCACCATGTGACATGTGAGCTGCATCAGGTGACGAAGAACCGGTGTTCCCTCTGGAAAGTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS GCA 72 bp TCACCTGATGCAGCTCACATGTCACATGGTGGGATCTaGAGTCACAGTGTGTTCCTTCCGTTGAACAGTAAG +
Preference number: 6 (lower is better)
Translates to: SPDAAHMSHGGI*SHSVFLPLNSK
Trigger: CTTACTGTTCAACGGAAGGAACACACTGTGACTGCAGATCCCACCATGTGACATGTGAGCTGCATCAGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4
CDS TCA 72 bp GAGGCACAGGGATCTTGGCAGGACCTTCCATCTGTGTaGATAACAATGGTGGTATTGTTGGAATTGCCAAAG +
Preference number: 6 (lower is better)
Translates to: EAQGSWQDLPSV*ITMVVLLELPK
Trigger: CTTTGGCAATTCCAACAATACCACCATTGTTATTCACACAGATGGAAGGTCCTGCCAAGATCCCTGTGCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025390.4