RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DYM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035765

Ensembl transcript IDs: ENSMUST00000039608.9, ENSMUST00000235692.2, ENSMUST00000236220.2

Found 222 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTCCCAGCCGCATGAGTGCATGTGTGTGCTCCCAGCCGCATGAGTaGATGTGTGTGCTCCCAGCCGCAGGAGTGCATGTGTGTGCTCCC +
Preference number: 1 (lower is better)
Translates to: APSRMSACVCSQPHE*MCVLPAAGVHVCAP
Trigger: GGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCATGCGGCTGGGAGCACACACATGCACTCATGCGGCTGGGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 90 bp GCTCCCAGCGCCATGAGTGCATGTGTGTGCTCCCAGCCGCATGAGTaGATGTGTGTGCTCCCAGCCGTAGGAGTGCATGTGTGTGCTCCC +
Preference number: 1 (lower is better)
Translates to: APSAMSACVCSQPHE*MCVLPAVGVHVCAP
Trigger: GGGAGCACACACATGCACTCCTACGGCTGGGAGCACACACATGCACTCATGCGGCTGGGAGCACACACATGCACTCATGGCGCTGGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 90 bp GCTCCCAGCGCCATGAGTGCATGTGTGTGCTCCCAGCCGCATGAGTaGATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTGCTCCC +
Preference number: 1 (lower is better)
Translates to: APSAMSACVCSQPHE*MCVLPAAGVHVCAP
Trigger: GGGAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCACTCATGCGGCTGGGAGCACACACATGCACTCATGGCGCTGGGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR TCA 90 bp CGCAGTCTCCCAATAGTCACAGTGTGTGAGGGAAGCACGCTTGTTTaGCCCTCTGTGGTGCCTCAGTCTGTCTGCCTCTGCTCCTGGGCG +
Preference number: 1 (lower is better)
Translates to: RSLPIVTVCEGSTLV*PSVVPQSVCLCSWA
Trigger: CGCCCAGGAGCAGAGGCAGACAGACTGAGGCACCACAGAGGGTCAAACAAGCGTGCTTCCCTCACACACTGTGACTATTGGGAGACTGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR GCA 90 bp GCTTCCAGCCGCAGGAGTGCATGTGTGTGCTCCCAGCCGCAGGAGTaGATGTGTGTGCTCCCAGACACACAATTAAAAATAACTCTATGT +
Preference number: 1 (lower is better)
Translates to: ASSRRSACVCSQPQE*MCVLPDTQLKITLC
Trigger: ACATAGAGTTATTTTTAATTGTGTGTCTGGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCCTGCGGCTGGAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR CCA 90 bp GAAGAGGGTGGTCACAAGGGTGGGGACGGACATGGAAGGGTTGATTaGGAAATGAGTGTGATCAGGATGCATGATGTGACATTCTCAAAG +
Preference number: 1 (lower is better)
Translates to: EEGGHKGGDGHGRVD*EMSVIRMHDVTFSK
Trigger: CTTTGAGAATGTCACATCATGCATCCTGATCACACTCATTTCCCAATCAACCCTTCCATGTCCGTCCCCACCCTTGTGACCACCCTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
3UTR TCA 90 bp TCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTaGACTACTGCTAACTGGCGCAGTCTCCCAATAGTCACAGTGTGT +
Preference number: 1 (lower is better)
Translates to: SRLFLSRPCSTIKAE*TTANWRSLPIVTVC
Trigger: ACACACTGTGACTATTGGGAGACTGCGCCAGTTAGCAGTAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR-3UTR TCA 90 bp GTGCATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTGCTCCCAGCGCCATGTGCTCCCAGCCGCATaGGTGCATGTGTGTGCTCCC +
Preference number: 2 (lower is better)
Translates to: VHVCASSRRSACVCSQRHVLPAA*VHVCAP
Trigger: GGGAGCACACACATGCACTCATGCGGCTGGGAGCAC...ATGGCGCTGGGAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp AGTGCATGTGTGTGCTCCCAGCCGCATGAGTGCATGTGTGTGCTCCCAGCCGCAAGGAGTGCATGTGTGTaGTCCCAGCCGCAGGAGTGC +
Preference number: 2 (lower is better)
Translates to: SACVCSQPHECMCVLPAARSACV*SQPQEC
Trigger: GCACTCCTGCGGCTGGGAGCACACACATGCACTCCT...TGCGGCTGGGAGCACACACATGCACTCATGCGGCTGGGAGCACACACATGCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp GACACACGCACACACCTCCACAGGTGCACGAGCGTGATCCAGCGCATGAGTGCCATGAGTGCATGTGTGTaGTCCCAGCCGCAGGAGTGC +
Preference number: 2 (lower is better)
Translates to: DTRTHLHRCTSVIQRMSAMSACV*SQPQEC
Trigger: GCACTCCTGCGGCTGGGAGCACACACATGCACTCAT...GGCACTCATGCGCTGGATCACGCTCGTGCACCTGTGGAGGTGTGTGCGTGTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp AGTGCATGTGTGTGCTCCCAGCCGCATGAGTGCATGTGTGTGCTCCCAGCCGCAAGGAGTGCATGTGTGTaGTCCCAGCGCCATGAGTGC +
Preference number: 2 (lower is better)
Translates to: SACVCSQPHECMCVLPAARSACV*SQRHEC
Trigger: GCACTCATGGCGCTGGGAGCACACACATGCACTCCT...TGCGGCTGGGAGCACACACATGCACTCATGCGGCTGGGAGCACACACATGCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp TTCACCACCAAACACCAGCAGAGCGTGAGGACTGACAGCAAAGGTCATCTGCACTCCCAGCCGCATGAGTaGATGTGTGTGCTCCCAGCC +
Preference number: 2 (lower is better)
Translates to: FTTKHQQSVRTDSKGHLHSQPHE*MCVLPA
Trigger: GGCTGGGAGCACACACATGCACTCATGCGGCTGGGA...GTGCAGATGACCTTTGCTGTCAGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp TTCACCACCAAACACCAGCAGAGCGTGAGGACTGACAGCAAAGGTCATCTGCACTTCCAGCCGCAGGAGTaGATGTGTGTGCTCCCAGCG +
Preference number: 2 (lower is better)
Translates to: FTTKHQQSVRTDSKGHLHFQPQE*MCVLPA
Trigger: CGCTGGGAGCACACACATGCACTCCTGCGGCTGGAA...GTGCAGATGACCTTTGCTGTCAGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR TCA 90 bp AGGCTCACAACACATATTAGCTCGAGCTCCAGGATAGCCAACACTTCCTCCTGCGTGCTCCCAGCCGCATaGGTGCATGTGTGTGCTTCC +
Preference number: 2 (lower is better)
Translates to: RLTTHISSSSRIANTSSCVLPAA*VHVCAS
Trigger: GGAAGCACACACATGCACTCATGCGGCTGGGAGCAC...GCAGGAGGAAGTGTTGGCTATCCTGGAGCTCGAGCTAATATGTGTTGTGAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp TGCAGGCTCACAACACATATTAGCTCGAGCTCCAGGATAGCCAACACTTCCTCCTCCCAGCCGCAGGAGTaGATGTGTGTGCTCCCAGAC +
Preference number: 2 (lower is better)
Translates to: CRLTTHISSSSRIANTSSSQPQE*MCVLPD
Trigger: GTCTGGGAGCACACACATGCACTCCTGCGGCTGGGA...GGAGGAAGTGTTGGCTATCCTGGAGCTCGAGCTAATATGTGTTGTGAGCCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp TTCACCACCAAACACCAGCAGAGCGTGAGGACTGACAGCAAAGGTCATCTGCACTCCCAGCTGCAGGAGTaGATGTGTGTGCTCTCAGCG +
Preference number: 2 (lower is better)
Translates to: FTTKHQQSVRTDSKGHLHSQLQE*MCVLSA
Trigger: CGCTGAGAGCACACACATGCACTCCTGCAGCTGGGA...GTGCAGATGACCTTTGCTGTCAGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp AGGCTCACAACACATATTAGCTCGAGCTCCAGGATAGCCAACACTTCCTCCTGCGATCCAGCGCATGAGTaGCTGTGTGTGCTCCCAGCC +
Preference number: 2 (lower is better)
Translates to: RLTTHISSSSRIANTSSCDPAHE*LCVLPA
Trigger: GGCTGGGAGCACACACAGGCACTCATGCGCTGGATC...GCAGGAGGAAGTGTTGGCTATCCTGGAGCTCGAGCTAATATGTGTTGTGAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR CAA 90 bp GGCTCAGCAGTCAGCAGCGCCTGCTGCTCTTCTAGAGAACTAGAGTaGGTTCCCAGCACCCACATCTGCAGGCTCACAACACATATTAGC +
Preference number: 2 (lower is better)
Translates to: GSAVSSACCSSRELE*VPSTHICRLTTHIS
Trigger: GCTAATATGTGTTGTGAGCCTGCAGATGTGGGTGCTGGGAACCAACTCTAGTTCTCTAGAAGAGCAGCAGGCGCTGCTGACTGCTGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp AGGACTGACAGCAAAGGTCATCTGCACGAGGACAGATGTCATGGTCTTAGGTGGTCCCAGCCGCATGAGTaGATGTGTGTGCTTCCAGCC +
Preference number: 2 (lower is better)
Translates to: RTDSKGHLHEDRCHGLRWSQPHE*MCVLPA
Trigger: GGCTGGAAGCACACACATGCACTCATGCGGCTGGGA...CCACCTAAGACCATGACATCTGTCCTCGTGCAGATGACCTTTGCTGTCAGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACTCTGCTCCTGGGCGTaGCTGGGGTGGGCGTGGCTG +
Preference number: 2 (lower is better)
Translates to: FPVYFCLALAVQSRLSELLCSWA*LGWAWL
Trigger: CAGCCACGCCCACCCCAGCCACGCCCAGGAGCAGAG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAGTCTGCCTCTGCTCCTaGGCGTGGCTGGGGTGGGCG +
Preference number: 2 (lower is better)
Translates to: FPVYFCLALAVQSRLSELVCLCS*AWLGWA
Trigger: CGCCCACCCCAGCCACGCCCAGGAGCAGAGGCAGAC...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACAGTCTGTCTGCCTCTaGTCCTGGGCGTGGCTGGGG +
Preference number: 2 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEQSVCL*SWAWLG
Trigger: CCCCAGCCACGCCCAGGAGCAGAGGCAGACAGACTG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAGTGCCTCAGTCTGTCTaGCTCTGCTCCTGGGCGTGG +
Preference number: 2 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEVPQSV*LCSWAW
Trigger: CCACGCCCAGGAGCAGAGGCAGACAGACTGAGGCAC...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR-3UTR GCA 90 bp AGCGTGAGGACTGACAGCAAAGGTCATCTGCACGAGGACAGATGTCATGGTCTTACTTCCTCCTGCTCCTaGATGCACACACAGCACACA +
Preference number: 2 (lower is better)
Translates to: SVRTDSKGHLHEDRCHGLTSSCS*MHTQHT
Trigger: TGTGTGCTGTGTGTGCATGCAGGAGCAGGAGGAAGT...AAGACCATGACATCTGTCCTCGTGCAGATGACCTTTGCTGTCAGTCCTCACGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp AGGTCACTCCCGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACATACAACCTAAGCGCTaGTTTTGGGTTTCCCTCACA +
Preference number: 2 (lower is better)
Translates to: RSLPSTQSLPKTVHKCVHIQPKR*FWVSLT
Trigger: TGTGAGGGAAACCCAAAAGCAGCGCTTAGGTTGTAT...GTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACGGGAGTGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
3UTR-3UTR GCA 90 bp GTTTTACACCATTCTACTGTTTTCACCACCAAACACCAGCAGAGCGTGAGGACTAGGAGTGCATGTGTGTaGTCTCAGCGCCATGAGTGC +
Preference number: 2 (lower is better)
Translates to: VLHHSTVFTTKHQQSVRTRSACV*SQRHEC
Trigger: GCACTCATGGCGCTGAGAGCACACACATGCACTCCT...AGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAAAACAGTAGAATGGTGTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp TTATCTCTTCCACTCCTCACAAACCCAGGACAAACGGTCTCCCATTTATGCGTGCCCAGCACCCACATCTaGAGGCTCACAACACATATT +
Preference number: 2 (lower is better)
Translates to: LSLPLLTNPGQTVSHLCVPSTHI*RLTTHI
Trigger: AATATGTGTTGTGAGCCTGCAGATGTGGGTGCTGGG...CACGCATAAATGGGAGACCGTTTGTCCTGGGTTTGTGAGGAGTGGAAGAGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR GCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATTTGACCCTCTGTGGTaGCTCAGTCTGTCTGCCTCT +
Preference number: 2 (lower is better)
Translates to: FPVYFCLALAVQSRLSELFDPLW*LSLSAS
Trigger: AGAGGCAGACAGACTGAGGCACCACAGAGGGTCAAA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR CAA 90 bp ACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTaGTACCAGGATCGTAGGCAAAGAAAACACACAATTAGAAAATTC +
Preference number: 2 (lower is better)
Translates to: TQSLPKTVHKCVHHC*YQDRRQRKHTIRKF
Trigger: GAATTTTCTAATTGTGTGTTTTCTTTGCCTACGATCCTGGTACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
3UTR-3UTR TCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAAATAGTCACAGTGTGTaGGGGAAGCACGCTTGTTTG +
Preference number: 2 (lower is better)
Translates to: FPVYFCLALAVQSRLSELNSHSV*GKHACL
Trigger: CAAACAAGCGTGCTTCCCTCACACACTGTGACTATT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR GCA 72 bp CCTGTGTGTGCTCCCAGCCGCAGGAGTGCATGTGTGTaGTCCCAGCCGCAGGAGTGCATGTGTGTGCTCCCA +
Preference number: 3 (lower is better)
Translates to: PVCAPSRRSACV*SQPQECMCVLP
Trigger: TGGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CGCATGAGTGCCTGTGTGTGCTCCCAGCCGCAGGAGTaGATGTGTGTGCTCCCAGCCGCAGGAGTGCATGTG +
Preference number: 3 (lower is better)
Translates to: RMSACVCSQPQE*MCVLPAAGVHV
Trigger: CACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACAGGCACTCATGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CCTCCACAGGTGCACGAGCGTGATCCAGCGCATGAGTaGCTGTGTGTGCTCCCAGCCGCAGGAGTGCATGTG +
Preference number: 3 (lower is better)
Translates to: PPQVHERDPAHE*LCVLPAAGVHV
Trigger: CACATGCACTCCTGCGGCTGGGAGCACACACAGGCACTCATGCGCTGGATCACGCTCGTGCACCTGTGGAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTaGTCCCAGCCGCAGGAGTGCATGTGTGTGCTCCCA +
Preference number: 3 (lower is better)
Translates to: HVCASSRRSACV*SQPQECMCVLP
Trigger: TGGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CATGTGTGTGCTCCCAGCCGTAGGAGTGCATGTGTGTaGTCCCAGCCGCAGGAGTGCATGTGTGTGCTCCCA +
Preference number: 3 (lower is better)
Translates to: HVCAPSRRSACV*SQPQECMCVLP
Trigger: TGGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCCTACGGCTGGGAGCACACACATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CATGTGTGTGCTCCCAGCCGCATGAGTGCATGTGTGTaGTCCCAGCCGCAGGAGTGCATGTGTGTGCTCCCA +
Preference number: 3 (lower is better)
Translates to: HVCAPSRMSACV*SQPQECMCVLP
Trigger: TGGGAGCACACACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCATGCGGCTGGGAGCACACACATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CGCATGAGTGCATGTGTGTGCTCCCAGCCGCATGAGTaGATGTGTGTGCTCCCAGCCGCAGGAGTGCATGTG +
Preference number: 3 (lower is better)
Translates to: RMSACVCSQPHE*MCVLPAAGVHV
Trigger: CACATGCACTCCTGCGGCTGGGAGCACACACATGCACTCATGCGGCTGGGAGCACACACATGCACTCATGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTaGTTCCAGCCGCAGGAGTGCATGTGTGTGCTCCCA +
Preference number: 3 (lower is better)
Translates to: HVCASSRRSACV*FQPQECMCVLP
Trigger: TGGGAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CGCATGAGTGCATGTGTGTGCTTCCAGCCGCAGGAGTaGATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTG +
Preference number: 3 (lower is better)
Translates to: RMSACVCFQPQE*MCVLPAAGVHV
Trigger: CACATGCACTCCTGCGGCTGGAAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCACTCATGCG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp GCCATGAGTGCATGTGTGTGCTCCCAGCCGCATGAGTaGATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTG +
Preference number: 3 (lower is better)
Translates to: AMSACVCSQPHE*MCVLPAAGVHV
Trigger: CACATGCACTCCTGCGGCTGGAAGCACACACATGCACTCATGCGGCTGGGAGCACACACATGCACTCATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CATGTGTGTGCTCCCAGCCGCATGAGTGCATGTGTGTaGTTCCAGCCGCAGGAGTGCATGTGTGTGCTCCCA +
Preference number: 3 (lower is better)
Translates to: HVCAPSRMSACV*FQPQECMCVLP
Trigger: TGGGAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCACTCATGCGGCTGGGAGCACACACATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp CATGTGTGTGCTCCCAGCCGCATGAGTGCATGTGTGTaGTTCCAGCCGCAGGAGTGCATGTGTGTGCTTCCA +
Preference number: 3 (lower is better)
Translates to: HVCAPSRMSACV*FQPQECMCVLP
Trigger: TGGAAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCACTCATGCGGCTGGGAGCACACACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp TCGAGCTCCAGGATAGCCAACACTTCCTCCTGCTCCTaGATGCACACACAGCACACAGGCAGACAGACACAC +
Preference number: 3 (lower is better)
Translates to: SSSRIANTSSCS*MHTQHTGRQTH
Trigger: GTGTGTCTGTCTGCCTGTGTGCTGTGTGTGCATGCAGGAGCAGGAGGAAGTGTTGGCTATCCTGGAGCTCGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR TCA 72 bp TTAGAAATCAGTCAGTGCGATTTAGCAGCCAGGGACTaGGGACGCAGAAACGGCTCAGCAGTCAGCAGCGCC +
Preference number: 3 (lower is better)
Translates to: LEISQCDLAARD*GRRNGSAVSSA
Trigger: GGCGCTGCTGACTGCTGAGCCGTTTCTGCGTCCTCAGTCCCTGGCTGCTAAATCGCACTGACTGATTTCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR GCA 72 bp GGTCACTCCCGTCCACCCAGAGTCTGCCCAAGACTGTaGACAAGTGTGTTCACCACTGTTTGTACCAGGATC +
Preference number: 3 (lower is better)
Translates to: GHSRPPRVCPRL*TSVFTTVCTRI
Trigger: GATCCTGGTACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACGGGAGTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
3UTR-3UTR CAA 90 bp TGCAGGCTCACAACACATATTAGCTCGAGCTCCAGGATAGCCAACACTTCCTCCACACCTCCACACCTCTaGCTCCTGCATGCATACACA +
Preference number: 3 (lower is better)
Translates to: CRLTTHISSSSRIANTSSTPPHL*LLHAYT
Trigger: TGTGTATGCATGCAGGAGCAAGAGGTGTGGAGGTGT...GGAGGAAGTGTTGGCTATCCTGGAGCTCGAGCTAATATGTGTTGTGAGCCTGCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR-3UTR CAA 90 bp GTGCATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTGCTCCCAGCGCCATCATTCCAACCAGTTTTaGAAATCGCACTCAATGAAT +
Preference number: 3 (lower is better)
Translates to: VHVCASSRRSACVCSQRHHSNQF*KSHSMN
Trigger: ATTCATTGAGTGCGATTTCAAAAACTGGTTGGAATG...ATGGCGCTGGGAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR TCA 72 bp ATTCTACTGTTTTCACCACCAAACACCAGCAGAGCGTaGGGACTGACAGCAAAGGTCATCTGCACGAGGACA +
Preference number: 3 (lower is better)
Translates to: ILLFSPPNTSRA*GLTAKVICTRT
Trigger: TGTCCTCGTGCAGATGACCTTTGCTGTCAGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAAAACAGTAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR TCA 72 bp CCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGTaGAATTTAGGTCACTCCCGTCCACCCAGAGTCTGC +
Preference number: 3 (lower is better)
Translates to: PFGAGCLSMTHL*NLGHSRPPRVC
Trigger: GCAGACTCTGGGTGGACGGGAGTGACCTAAATTTCACAGATGTGTCATAGATAAACAACCAGCTCCAAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
3UTR-3UTR CAA 90 bp AGCGTGAGGACTGACAGCAAAGGTCATCTGCACGAGGACAGATGTCATGGTCTTACATCAACTGAGTCTTaGTCTTATACTGGCGGCATA +
Preference number: 3 (lower is better)
Translates to: SVRTDSKGHLHEDRCHGLTSTES*SYTGGI
Trigger: TATGCCGCCAGTATAAGACAAAGACTCAGTTGATGT...AAGACCATGACATCTGTCCTCGTGCAGATGACCTTTGCTGTCAGTCCTCACGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR CCA 72 bp GGTCATCTGCACGAGGACAGATGTCATGGTCTTAGGTaGGATTTTATACACTTATCTCTTCCACTCCTCACA +
Preference number: 3 (lower is better)
Translates to: GHLHEDRCHGLR*DFIHLSLPLLT
Trigger: TGTGAGGAGTGGAAGAGATAAGTGTATAAAATCCCACCTAAGACCATGACATCTGTCCTCGTGCAGATGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp ATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTGCTTCCAGCCGCAGGAGTCCCCCATCCGACTGCTaGGGGAAGACATGGGTTCCG +
Preference number: 4 (lower is better)
Translates to: MCVLPAAGVHVCASSRRSPPSDC*GKTWVP
Trigger: CGGAACCCATGTCTTCCCTCAGCAGTCGGATGGGGG...ACTCCTGCGGCTGGAAGCACACACATGCACTCCTGCGGCTGGAAGCACACACAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp GACACACGCACACACCTCCACAGGTGCACGAGCGTGATCCAGCGCATGAGTGCCGCTGGTTGCTACTCCTaGTGCCAGTCCATACAGCAG +
Preference number: 4 (lower is better)
Translates to: DTRTHLHRCTSVIQRMSAAGCYS*CQSIQQ
Trigger: CTGCTGTATGGACTGGCATCAGGAGTAGCAACCAGC...GGCACTCATGCGCTGGATCACGCTCGTGCACCTGTGGAGGTGTGTGCGTGTGTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR GCA 90 bp ATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTGCTTCCAGCCGCAGGAGTGCTTCAACTCAGAACTaGTGGTTGGTGCGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: MCVLPAAGVHVCASSRRSASTQN*WLVRGK
Trigger: CTTTCCCCGCACCAACCAGCAGTTCTGAGTTGAAGC...ACTCCTGCGGCTGGAAGCACACACATGCACTCCTGCGGCTGGAAGCACACACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp GACACACGCACACACCTCCACAGGTGCACGAGCGTGATCCAGCGCATGAGTGCCAGAGTGGAGTATCAGTaGTTAACTGTACCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: DTRTHLHRCTSVIQRMSARVEYQ*LTVPSC
Trigger: GCAGCTTGGTACAGTTAATCACTGATACTCCACTCT...GGCACTCATGCGCTGGATCACGCTCGTGCACCTGTGGAGGTGTGTGCGTGTGTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp CACTCCCGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTTTGCCTTGCTACTCCTaGTGCCAGTCCATACAGCAG +
Preference number: 4 (lower is better)
Translates to: HSRPPRVCPRLCTSVFTTLPCYS*CQSIQQ
Trigger: CTGCTGTATGGACTGGCATCAGGAGTAGCAAGGCAA...AGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACGGGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR GCA 90 bp GACACACGCACACACCTCCACAGGTGCACGAGCGTGATCCAGCGCATGAGTGCCAGAGCATTGTGTGTCTaGCAGATGAAGATGTGGTTC +
Preference number: 4 (lower is better)
Translates to: DTRTHLHRCTSVIQRMSARALCV*QMKMWF
Trigger: GAACCACATCTTCATCTGGCAGACACACAATGCTCT...GGCACTCATGCGCTGGATCACGCTCGTGCACCTGTGGAGGTGTGTGCGTGTGTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
3UTR CAA 72 bp GTCAGCAGCGCCTGCTGCTCTTCTAGAGAACTAGAGTaGGTTCCCAGCACCCACATCTGCAGGCTCACAACA +
Preference number: 4 (lower is better)
Translates to: VSSACCSSRELE*VPSTHICRLTT
Trigger: TGTTGTGAGCCTGCAGATGTGGGTGCTGGGAACCAACTCTAGTTCTCTAGAAGAGCAGCAGGCGCTGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAGGGACGCAGCTGCTTTaGTGCCTGCCCCGCCTAGCG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEGTQLL*CLPRLA
Trigger: CGCTAGGCGGGGCAGGCAGCAAAGCAGCTGCGTCCC...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp GTGCTCCCAGCCGCAGGAGTGCATGTGTGTGCTCCCAGCGCCATGAGTGCATGTTCTTCATATGTAAAATaGAGCTGCAGCTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: VLPAAGVHVCAPSAMSACSSYVK*SCSSSS
Trigger: TGAGGAAGAGCTGCAGCTTCATTTTACATATGAAGA...ACATGCACTCATGGCGCTGGGAGCACACACATGCACTCCTGCGGCTGGGAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CCA 90 bp GACACACGCACACACCTCCACAGGTGCACGAGCGTGATCCAGCGCATGAGTGCCACTTGCAAACTGAAATaGTTGCCTCTTCCAATAGCT +
Preference number: 4 (lower is better)
Translates to: DTRTHLHRCTSVIQRMSATCKLK*LPLPIA
Trigger: AGCTATTGGAAGAGGCAACCATTTCAGTTTGCAAGT...GGCACTCATGCGCTGGATCACGCTCGTGCACCTGTGGAGGTGTGTGCGTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp CGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTTGTTCAGGTACTTGTGACTaGTGCTCTGTCGCAGAACCT +
Preference number: 4 (lower is better)
Translates to: RPPRVCPRLCTSVFTTVCSGTCD*CSVAEP
Trigger: AGGTTCTGCGACAGAGCATCAGTCACAAGTACCTGA...ACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp CCCGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTTTCAACTCAGAACTGCTaGTTGGTGCGGGGAAAGAAA +
Preference number: 4 (lower is better)
Translates to: PVHPESAQDCAQVCSPLFSTQNC*LVRGKK
Trigger: TTTCTTTCCCCGCACCAACCAGCAGTTCTGAGTTGA...AAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp ATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTGCTTCCAGCCGCAGGAGTTTTTCACAAGTTTACTaGTGTAGGGAAGACATGGGC +
Preference number: 4 (lower is better)
Translates to: MCVLPAAGVHVCASSRRSFSQVY*CREDMG
Trigger: GCCCATGTCTTCCCTACACCAGTAAACTTGTGAAAA...ACTCCTGCGGCTGGAAGCACACACATGCACTCCTGCGGCTGGAAGCACACACAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CCA 90 bp CGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTTGTGGTTCCGGGCGGAGGTaGCTTTTCTTGTCTGATAAA +
Preference number: 4 (lower is better)
Translates to: RPPRVCPRLCTSVFTTVCGSGRR*LFLSDK
Trigger: TTTATCAGACAAGAAAAGCCACCTCCGCCCGGAACC...ACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR TCA 90 bp CCCGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTTAGAGTGGAGTATCAGTaGTTAACTGTACCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: PVHPESAQDCAQVCSPLFRVEYQ*LTVPSC
Trigger: GCAGCTTGGTACAGTTAATCACTGATACTCCACTCT...AAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR TCA 90 bp AGCGTGAGGACTGACAGCAAAGGTCATCTGCACGAGGACAGATGTCATGGTCTTTCAGGTACTTGTGACTaGTGCTCTGTCGCAGAACCT +
Preference number: 4 (lower is better)
Translates to: SVRTDSKGHLHEDRCHGLSGTCD*CSVAEP
Trigger: AGGTTCTGCGACAGAGCATCAGTCACAAGTACCTGA...AAGACCATGACATCTGTCCTCGTGCAGATGACCTTTGCTGTCAGTCCTCACGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp CCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTTGTACCAGGATGCATCAGGTACTTGTaGCTGATGCTCTGTCGCAGA +
Preference number: 4 (lower is better)
Translates to: PESAQDCAQVCSPLFVPGCIRYL*LMLCRR
Trigger: TCTGCGACAGAGCATCAGTCACAAGTACCTGATGCA...TCCTGGTACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR TCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACCCCCATCCGACTGCTaGGGGAAGACATGGGTTCCG +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELPPSDC*GKTWVP
Trigger: CGGAACCCATGTCTTCCCTCAGCAGTCGGATGGGGG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp CGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTTGTCGAGATGGCCTCCACTaGTATCTCATACGTGATATC +
Preference number: 4 (lower is better)
Translates to: RPPRVCPRLCTSVFTTVCRDGLH*YLIRDI
Trigger: GATATCACGTATGAGATAGCAGTGGAGGCCATCTCG...ACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACTCTGGGCAGCGTACTaGTGGAGGGAGCGGAACTGC +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELLWAAY*WRERNC
Trigger: GCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGAG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp TCTCTTCCACTCCTCACAAACCCAGGACAAACGGTCTCCCATTTATGCGTGTTAATGAAGATGTGGTTCTaGCACTCGGCTGAGAGCCTG +
Preference number: 4 (lower is better)
Translates to: SLPLLTNPGQTVSHLCVLMKMWF*HSAESL
Trigger: CAGGCTCTCAGCCGAGTGTCAGAACCACATCTTCAT...TAACACGCATAAATGGGAGACCGTTTGTCCTGGGTTTGTGAGGAGTGGAAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp ACAGATGTCATGGTCTTAGGTGGGATTTTATACACTTATCTCTTCCACTCCTCATGGGAGAGAGGCTCCTaGGGAATGGGAGAGCGGCTC +
Preference number: 4 (lower is better)
Translates to: TDVMVLGGILYTYLFHSSWERGS*GMGERL
Trigger: GAGCCGCTCTCCCATTCCTCAGGAGCCTCTCTCCCA...TGAGGAGTGGAAGAGATAAGTGTATAAAATCCCACCTAAGACCATGACATCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp TGTGCTCCCAGACACACAATTAAAAATAACTCTATGTTAGCACCAGACCTCACTTGGGAGAGCGGCTCCTaGGGAATGGGAGAGAGGCTC +
Preference number: 4 (lower is better)
Translates to: CAPRHTIKNNSMLAPDLTWESGS*GMGERL
Trigger: GAGCCTCTCTCCCATTCCTCAGGAGCCGCTCTCCCA...AGTGAGGTCTGGTGCTAACATAGAGTTATTTTTAATTGTGTGTCTGGGAGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR GCA 90 bp CCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTTGTACCAGGAAGTCAGAACTGTAGCTaGCGGGGGACTTTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: PESAQDCAQVCSPLFVPGSQNCS*RGTFLH
Trigger: ATGAAGAAAAGTCCCCCGGCAGCTACAGTTCTGACT...TCCTGGTACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR GCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAGGACCTCTCAAGGACTaGGTGGCTTGCTCCAGGACC +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELGPLKD*VACSRT
Trigger: GGTCCTGGAGCAAGCCACGCAGTCCTTGAGAGGTCC...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp CAATTAGAAAATTCAACCCACAACAAACACAACCCGGAAAGCCTCTTCAAGATACCCCCATCCGACTGCTaGGGGAAGACATGGGTTCCG +
Preference number: 4 (lower is better)
Translates to: QLENSTHNKHNPESLFKIPPSDC*GKTWVP
Trigger: CGGAACCCATGTCTTCCCTCAGCAGTCGGATGGGGG...TATCTTGAAGAGGCTTTCCGGGTTGTGTTTGTTGTGGGTTGAATTTTCTAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACCAGCACGTACGTCCTaGCATTGCTGTTCTGGTGGA +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEPARTS*HCCSGG
Trigger: TCCACCAGAACAGCAATGTCAGGACGTACGTGCTGG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAAACAGCTGGATGTCCTaGGGGTTCCAGTACAAGCCG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSENSWMS*GFQYKP
Trigger: CGGCTTGTACTGGAACCCGCAGGACATCCAGCTGTT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTCTCAAGGACTGCGTaGCTTGCTCCAGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSELSRTA*LAPGPC
Trigger: ACAAGGTCCTGGAGCAAGCCACGCAGTCCTTGAGAG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAATGAAGATGTGGTTCTaGCACTCGGCTGAGAGCCTG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEMKMWF*HSAESL
Trigger: CAGGCTCTCAGCCGAGTGTCAGAACCACATCTTCAT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp TTATCTCTTCCACTCCTCACAAACCCAGGACAAACGGTCTCCCATTTATGCGTGTGTGTGTCTGCCAGATaGAGATGTGGTTCTGACACT +
Preference number: 4 (lower is better)
Translates to: LSLPLLTNPGQTVSHLCVCVSAR*RCGSDT
Trigger: AGTGTCAGAACCACATCTTCATCTGGCAGACACACA...CACGCATAAATGGGAGACCGTTTGTCCTGGGTTTGTGAGGAGTGGAAGAGATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACAGACAGCTCACGGATaGACACTTTCAGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEQTAHG*TLSASS
Trigger: GCTGCTTGCTGAAAGTGTTCATCCGTGAGCTGTCTG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAACCAGTTGCTACTCCTaGTGCCAGTCCATACAGCAG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSETSCYS*CQSIQQ
Trigger: CTGCTGTATGGACTGGCATCAGGAGTAGCAACTGGT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp GTTTTACACCATTCTACTGTTTTCACCACCAAACACCAGCAGAGCGTGAGGACTGGTTCCGGGCGGAGGTaGCTTTTCTTGTCTGATAAA +
Preference number: 4 (lower is better)
Translates to: VLHHSTVFTTKHQQSVRTGSGRR*LFLSDK
Trigger: TTTATCAGACAAGAAAAGCCACCTCCGCCCGGAACC...AGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAAAACAGTAGAATGGTGTAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTGACATTGCTGTTCTaGTGGAGCAGCGTGTACAGG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSELTLLF*WSSVYR
Trigger: CCTGTACACGCTGCTCCACCAGAACAGCAATGTCAG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAATGCATCAGGTACTTGTaGCTGATGCTCTGTCGCAGA +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSECIRYL*LMLCRR
Trigger: TCTGCGACAGAGCATCAGTCACAAGTACCTGATGCA...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAGCTTCAACTCAGAACTaGTGGTTGGTGCGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELASTQN*WLVRGK
Trigger: CTTTCCCCGCACCAACCAGCAGTTCTGAGTTGAAGC...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAATGGAGGGAGCGGAACTaGGCTGACATGTTTGCTAAA +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEWRERN*ADMFAK
Trigger: TTTAGCAAACATGTCAGCGCAGTTCCGCTCCCTCCA...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp GTTTTACACCATTCTACTGTTTTCACCACCAAACACCAGCAGAGCGTGAGGACTTCAACTCAGAACTGCTaGTTGGTGCGGGGAAAGAAA +
Preference number: 4 (lower is better)
Translates to: VLHHSTVFTTKHQQSVRTSTQNC*LVRGKK
Trigger: TTTCTTTCCCCGCACCAACCAGCAGTTCTGAGTTGA...AGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAAAACAGTAGAATGGTGTAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CCA 90 bp GTTTTACACCATTCTACTGTTTTCACCACCAAACACCAGCAGAGCGTGAGGACTTCCTTGTGGAAGAGTTaGCAGGAAAGGAAGACAACC +
Preference number: 4 (lower is better)
Translates to: VLHHSTVFTTKHQQSVRTSLWKS*QERKTT
Trigger: GGTTGTCTTCCTTTCCTGCCAACTCTTCCACAAGGA...AGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAAAACAGTAGAATGGTGTAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAGGTGTAGGGAAGACATaGGCCTTGCATCAGGTACTT +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEGVGKT*ALHQVL
Trigger: AAGTACCTGATGCAAGGCCCATGTCTTCCCTACACC...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp GGAAGGGTTGATTGGGAAATGAGTGTGATCAGGATGCATGATGTGACATTCTCAGGTGTAGGGAAGACATaGGCCTTGCATCAGGTACTT +
Preference number: 4 (lower is better)
Translates to: GRVDWEMSVIRMHDVTFSGVGKT*ALHQVL
Trigger: AAGTACCTGATGCAAGGCCCATGTCTTCCCTACACC...TGAGAATGTCACATCATGCATCCTGATCACACTCATTTCCCAATCAACCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAGGTTCCGGGCGGAGGTaGCTTTTCTTGTCTGATAAA +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEGSGRR*LFLSDK
Trigger: TTTATCAGACAAGAAAAGCCACCTCCGCCCGGAACC...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAAGGAGATGTAAGTTCTaGGGACGCAGCTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSERRCKF*GRSCFA
Trigger: AGCAAAGCAGCTGCGTCCCCAGAACTTACATCTCCT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAAAACTGATGATCCTCTaGGCAGCGTACTGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELKLMIL*AAYWWR
Trigger: CCTCCACCAGTACGCTGCCCAGAGGATCATCAGTTT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp ACAGATGTCATGGTCTTAGGTGGGATTTTATACACTTATCTCTTCCACTCCTCACAGACAGCTCACGGATaGACACTTTCAGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: TDVMVLGGILYTYLFHSSQTAHG*TLSASS
Trigger: GCTGCTTGCTGAAAGTGTTCATCCGTGAGCTGTCTG...TGAGGAGTGGAAGAGATAAGTGTATAAAATCCCACCTAAGACCATGACATCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATCAGGTACTTGTGACTaGTGCTCTGTCGCAGAACCT +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELSGTCD*CSVAEP
Trigger: AGGTTCTGCGACAGAGCATCAGTCACAAGTACCTGA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAAGTCAGAACTGTAGCTaGCGGGGGACTTTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSESQNCS*RGTFLH
Trigger: ATGAAGAAAAGTCCCCCGGCAGCTACAGTTCTGACT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACGAGATGGCCTCCACTaGTATCTCATACGTGATATC +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSERDGLH*YLIRDI
Trigger: GATATCACGTATGAGATAGCAGTGGAGGCCATCTCG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAAAGAACTCCTCAGGCTaGTCTTCCTCCACGTATTTG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEKNSSG*SSSTYL
Trigger: CAAATACGTGGAGGAAGAGCAGCCTGAGGAGTTCTT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAATCCTTGTGGAAGAGTTaGCAGGAAAGGAAGACAACC +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSESLWKS*QERKTT
Trigger: GGTTGTCTTCCTTTCCTGCCAACTCTTCCACAAGGA...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATCTTTAGTCTGTCTTTaGGCAGCGCCACAACCCCTT +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELSLVCL*AAPQPL
Trigger: AAGGGGTTGTGGCGCTGCCCAAAGACAGACTAAAGA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
3UTR CAA 72 bp CTGCCCAAGACTGTGCACAAGTGTGTTCACCACTGTTaGTACCAGGATCGTAGGCAAAGAAAACACACAATT +
Preference number: 4 (lower is better)
Translates to: LPKTVHKCVHHC*YQDRRQRKHTI
Trigger: AATTGTGTGTTTTCTTTGCCTACGATCCTGGTACAAACAGTGGTGAACACACTTGTGCACAGTCTTGGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR TCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATGTGTGTCTGCCAGATaGAGATGTGGTTCTGACACT +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELCVSAR*RCGSDT
Trigger: AGTGTCAGAACCACATCTTCATCTGGCAGACACACA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp CAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGTGAAATTTAGGCAGACAGCTCACGGATaGACACTTTCAGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: QFPLWSWLFIYDTSVKFRQTAHG*TLSASS
Trigger: GCTGCTTGCTGAAAGTGTTCATCCGTGAGCTGTCTG...CCTAAATTTCACAGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAAGAGTGGAGTATCAGTaGTTAACTGTACCAAGCTGC +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSERVEYQ*LTVPSC
Trigger: GCAGCTTGGTACAGTTAATCACTGATACTCCACTCT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp TGTGCTCCCAGACACACAATTAAAAATAACTCTATGTTAGCACCAGACCTCACTTGCATCAGGTACTTGTaGCTGATGCTCTGTCGCAGA +
Preference number: 4 (lower is better)
Translates to: CAPRHTIKNNSMLAPDLTCIRYL*LMLCRR
Trigger: TCTGCGACAGAGCATCAGTCACAAGTACCTGATGCA...AGTGAGGTCTGGTGCTAACATAGAGTTATTTTTAATTGTGTGTCTGGGAGCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAAAGTTTGGGTTGTGGTaGAGAGAATTTGTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEKFGLW*REFVRQ
Trigger: CTGCCTGACAAATTCTCTTCACCACAACCCAAACTT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACATTATGTCCTGGAATaGGGGATGAGTTCGGAATTG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEHYVLE*GMSSEL
Trigger: CAATTCCGAACTCATCCCTCATTCCAGGACATAATG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp CAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGTGAAATTTAGGGCTTCAACTCAGAACTaGTGGTTGGTGCGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: QFPLWSWLFIYDTSVKFRASTQN*WLVRGK
Trigger: CTTTCCCCGCACCAACCAGCAGTTCTGAGTTGAAGC...CCTAAATTTCACAGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR GCA 90 bp GGAAGGGTTGATTGGGAAATGAGTGTGATCAGGATGCATGATGTGACATTCTCAAGAGCATTGTGTGTCTaGCAGATGAAGATGTGGTTC +
Preference number: 4 (lower is better)
Translates to: GRVDWEMSVIRMHDVTFSRALCV*QMKMWF
Trigger: GAACCACATCTTCATCTGGCAGACACACAATGCTCT...TGAGAATGTCACATCATGCATCCTGATCACACTCATTTCCCAATCAACCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATCAACTCAGAACTGCTaGTTGGTGCGGGGAAAGAAA +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELSTQNC*LVRGKK
Trigger: TTTCTTTCCCCGCACCAACCAGCAGTTCTGAGTTGA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp ACAGATGTCATGGTCTTAGGTGGGATTTTATACACTTATCTCTTCCACTCCTCAGGTGTAGGGAAGACATaGGCCTTGCATCAGGTACTT +
Preference number: 4 (lower is better)
Translates to: TDVMVLGGILYTYLFHSSGVGKT*ALHQVL
Trigger: AAGTACCTGATGCAAGGCCCATGTCTTCCCTACACC...TGAGGAGTGGAAGAGATAAGTGTATAAAATCCCACCTAAGACCATGACATCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAGGCGTACACCAAGTTTaGGTTGTGGTGAAGAGAATT +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEGVHQV*VVVKRI
Trigger: AATTCTCTTCACCACAACCCAAACTTGGTGTACGCC...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp GTGCACAAGTGTGTTCACCACTGTTTGTACCAGGATCGTAGGCAAAGAAAACACTCTTCATATGTAAAATaGAGCTGCAGCTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: VHKCVHHCLYQDRRQRKHSSYVK*SCSSSS
Trigger: TGAGGAAGAGCTGCAGCTTCATTTTACATATGAAGA...GTGTTTTCTTTGCCTACGATCCTGGTACAAACAGTGGTGAACACACTTGTGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR GCA 90 bp TTATCTCTTCCACTCCTCACAAACCCAGGACAAACGGTCTCCCATTTATGCGTGTTTCAACCAAAGACTTaGAAACTGAAATGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: LSLPLLTNPGQTVSHLCVFQPKT*KLKWLP
Trigger: AGGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAA...CACGCATAAATGGGAGACCGTTTGTCCTGGGTTTGTGAGGAGTGGAAGAGATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR GCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAAGAGCATTGTGTGTCTaGCAGATGAAGATGTGGTTC +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELRALCV*QMKMWF
Trigger: GAACCACATCTTCATCTGGCAGACACACAATGCTCT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp TGTGCTCCCAGACACACAATTAAAAATAACTCTATGTTAGCACCAGACCTCACTAGTCAGAACTGTAGCTaGCGGGGGACTTTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: CAPRHTIKNNSMLAPDLTSQNCS*RGTFLH
Trigger: ATGAAGAAAAGTCCCCCGGCAGCTACAGTTCTGACT...AGTGAGGTCTGGTGCTAACATAGAGTTATTTTTAATTGTGTGTCTGGGAGCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR GCA 90 bp ACAGATGTCATGGTCTTAGGTGGGATTTTATACACTTATCTCTTCCACTCCTCACGAGATGGCCTCCACTaGTATCTCATACGTGATATC +
Preference number: 4 (lower is better)
Translates to: TDVMVLGGILYTYLFHSSRDGLH*YLIRDI
Trigger: GATATCACGTATGAGATAGCAGTGGAGGCCATCTCG...TGAGGAGTGGAAGAGATAAGTGTATAAAATCCCACCTAAGACCATGACATCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAACTTGTCTCGAGTCCTaGTCATATTGTACTGGATGG +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELTCLES*SYCTGW
Trigger: CCATCCAGTACAATATGACCAGGACTCGAGACAAGT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACAAAGACTTGCAAACTaGAATGGTTGCCTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELQRLAN*NGCLFQ
Trigger: TTGGAAGAGGCAACCATTTCAGTTTGCAAGTCTTTG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp CAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGTGAAATTTAGGTGTGTGTCTGCCAGATaGAGATGTGGTTCTGACACT +
Preference number: 4 (lower is better)
Translates to: QFPLWSWLFIYDTSVKFRCVSAR*RCGSDT
Trigger: AGTGTCAGAACCACATCTTCATCTGGCAGACACACA...CCTAAATTTCACAGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAATCTTCATATGTAAAATaGAGCTGCAGCTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSESSYVK*SCSSSS
Trigger: TGAGGAAGAGCTGCAGCTTCATTTTACATATGAAGA...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACATATAGACATGGTGTaGGTTTCTTTCCTCAACATG +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEHIDMV*VSFLNM
Trigger: CATGTTGAGGAAAGAAACTCACACCATGTCTATATG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACTTCCTCCACGTATTTaGACTTCAGTTCTGGAAACT +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELLPPRI*TSVLET
Trigger: AGTTTCCAGAACTGAAGTTCAAATACGTGGAGGAAG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAACTTGCAAACTGAAATaGTTGCCTCTTCCAATAGCT +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSETCKLK*LPLPIA
Trigger: AGCTATTGGAAGAGGCAACCATTTCAGTTTGCAAGT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp AAAGTCAGAAACCAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTTCCTTGTGGAAGAGTTaGCAGGAAAGGAAGACAACC +
Preference number: 4 (lower is better)
Translates to: KVRNQFPLWSWLFIYDTSSLWKS*QERKTT
Trigger: GGTTGTCTTCCTTTCCTGCCAACTCTTCCACAAGGA...AGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTGGTTTCTGACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATTTTCACAAGTTTACTaGTGTAGGGAAGACATGGGC +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELFSQVY*CREDMG
Trigger: GCCCATGTCTTCCCTACACCAGTAAACTTGTGAAAA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTGGTCATATTGTACTaGATGGTTCTTATTACCACC +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSELVILY*MVLITT
Trigger: GGTGGTAATAAGAACCATCCAGTACAATATGACCAG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp TGTGCTCCCAGACACACAATTAAAAATAACTCTATGTTAGCACCAGACCTCACTCAAAGACTTGCAAACTaGAATGGTTGCCTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: CAPRHTIKNNSMLAPDLTQRLAN*NGCLFQ
Trigger: TTGGAAGAGGCAACCATTTCAGTTTGCAAGTCTTTG...AGTGAGGTCTGGTGCTAACATAGAGTTATTTTTAATTGTGTGTCTGGGAGCACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR TCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATTAATCTGGAAGGTATaGGGAATTGATGATGGGAAC +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELLIWKV*GIDDGN
Trigger: GTTCCCATCATCAATTCCTCATACCTTCCAGATTAA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAATTTCAACCAAAGACTTaGAAACTGAAATGGTTGCCT +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEFQPKT*KLKWLP
Trigger: AGGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAA...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR GCA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAACCAGGTCAATGTTTTaGATTATGTCCTGGAATGAG +
Preference number: 4 (lower is better)
Translates to: FPVYFCLALAVQSRLSELTRSMF*IMSWNE
Trigger: CTCATTCCAGGACATAATGCAAAACATTGACCTGGT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR TCA 90 bp AAAGTCAGAAACCAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTCAAAGACTTGCAAACTaGAATGGTTGCCTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: KVRNQFPLWSWLFIYDTSQRLAN*NGCLFQ
Trigger: TTGGAAGAGGCAACCATTTCAGTTTGCAAGTCTTTG...AGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTGGTTTCTGACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp CAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGTGAAATTTAGGTTTTCACAAGTTTACTaGTGTAGGGAAGACATGGGC +
Preference number: 4 (lower is better)
Translates to: QFPLWSWLFIYDTSVKFRFSQVY*CREDMG
Trigger: GCCCATGTCTTCCCTACACCAGTAAACTTGTGAAAA...CCTAAATTTCACAGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CCA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAATCATATTGTACTGGATaGTTCTTATTACCACCAGAA +
Preference number: 4 (lower is better)
Translates to: TFPVYFCLALAVQSRLSESYCTG*FLLPPE
Trigger: TTCTGGTGGTAATAAGAACCATCCAGTACAATATGA...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 90 bp GGAGAGCGGCTCCTGAGGAATGGGAGAGCGGCTGGTTGCTACTCCTaGTGCCAGTCCATACAGCAGTCCTCCCCCATCCGACTGCTGAGG +
Preference number: 5 (lower is better)
Translates to: GERLLRNGRAAGCYS*CQSIQQSSPIRLLR
Trigger: CCTCAGCAGTCGGATGGGGGAGGACTGCTGTATGGACTGGCATCAGGAGTAGCAACCAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS TCA 90 bp CTGAGGAATGGGAGAGAGGCTCCTGAGGAATGGGAGAGCGGCTCCTaGGGAATGGGAGAGCGGCTGGTTGCTACTCCTGATGCCAGTCCA +
Preference number: 5 (lower is better)
Translates to: LRNGREAPEEWESGS*GMGERLVATPDASP
Trigger: TGGACTGGCATCAGGAGTAGCAACCAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCTCTCTCCCATTCCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS CCA 90 bp GGGGCATCCGTCAGGTTCACCAGCACCAGCAGCAGCAGGAGACTCTaGTTGGCCAGAGGAGATGTAAGTTCTGGGGACGCAGCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: GASVRFTSTSSSRRL*LARGDVSSGDAAAL
Trigger: CAAAGCAGCTGCGTCCCCAGAACTTACATCTCCTCTGGCCAACCAGAGTCTCCTGCTGCTGCTGGTGCTGGTGAACCTGACGGATGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 90 bp ATGGGAGAGAGGCTCCTGAGGAATGGGAGAGCGGCTCCTGAGGAATaGGAGAGCGGCTGGTTGCTACTCCTGATGCCAGTCCATACAGCA +
Preference number: 5 (lower is better)
Translates to: MGERLLRNGRAAPEE*ESGWLLLLMPVHTA
Trigger: TGCTGTATGGACTGGCATCAGGAGTAGCAACCAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCTCTCTCCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS TCA 90 bp GGCAAACAGCTGGATGTCCTGCGGGTTCCAGTACAAGCCGACCGCTaGGTTGTAGACCAGGGACCAGACGTACGGGATGAAGAACTCCTC +
Preference number: 5 (lower is better)
Translates to: GKQLDVLRVPVQADR*VVDQGPDVRDEELL
Trigger: GAGGAGTTCTTCATCCCGTACGTCTGGTCCCTGGTCTACAACTCAGCGGTCGGCTTGTACTGGAACCCGCAGGACATCCAGCTGTTTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp GTGCATGTGTGTGCTTCCAGCCGCAGGAGTGCATGTGTGTGCTCCCAGCGCCATACTCAGAACTGCTGGTaGGTGCGGGGAAAGAAAATG +
Preference number: 5 (lower is better)
Translates to: VHVCASSRRSACVCSQRHTQNCW*VRGKKM
Trigger: CATTTTCTTTCCCCGCACCAACCAGCAGTTCTGAGT...ATGGCGCTGGGAGCACACACATGCACTCCTGCGGCTGGAAGCACACACATGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS GCA 90 bp CCTGACATTGCTGTTCTGGTGGAGCAGCGTGTACAGGAGCAGCGTTaGCTGATCAGACGTCTGCTGCTCACACAGGGCTGTGTACAAACT +
Preference number: 5 (lower is better)
Translates to: PDIAVLVEQRVQEQR*LIRRLLLTQGCVQT
Trigger: AGTTTGTACACAGCCCTGTGTGAGCAGCAGACGTCTGATCAGGCAACGCTGCTCCTGTACACGCTGCTCCACCAGAACAGCAATGTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp AGGTCACTCCCGTCCACCCAGAGTCTGCCCAAGACTGTGCACAAGTGTGTTCACAAAGGAAGACAACCATaGCCGAGATGGCCTCCACTG +
Preference number: 5 (lower is better)
Translates to: RSLPSTQSLPKTVHKCVHKGRQP*PRWPPL
Trigger: CAGTGGAGGCCATCTCGGCAATGGTTGTCTTCCTTT...GTGAACACACTTGTGCACAGTCTTGGGCAGACTCTGGGTGGACGGGAGTGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS CCA 90 bp GACAGCAAAGAAAACAAACTGATGATCCTCTGGGCAGCGTACTGGTaGAGGGAGCGGAACTGCGCTGACATGTTTGCTAAAGCCGCCAGG +
Preference number: 5 (lower is better)
Translates to: DSKENKLMILWAAYW*RERNCADMFAKAAR
Trigger: CCTGGCGGCTTTAGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGAGGATCATCAGTTTGTTTTCTTTGCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAGGGGACGCAGCTGCTTaGCTGCCTGCCCCGCCTAGC +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELGDAAA*LPAPPS
Trigger: GCTAGGCGGGGCAGGCAGCAAAGCAGCTGCGTCCCC...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 90 bp ACATTGCTGTTCTGGTGGAGCAGCGTGTACAGGAGCAGCGTTGCCTaGTCAGACGTCTGCTGCTCACACAGGGCTGTGTACAAACTGTTA +
Preference number: 5 (lower is better)
Translates to: TLLFWWSSVYRSSVA*SDVCCSHRAVYKLL
Trigger: TAACAGTTTGTACACAGCCCTGTGTGAGCAGCAGACGTCTGATCAGGCAACGCTGCTCCTGTACACGCTGCTCCACCAGAACAGCAATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 90 bp GTAAAACAAGATTTTCCATATCCGTCCGGGCCAGCACGTACGTCCTaGCATTGCTGTTCTGGTGGAGCAGCGTGTACAGGAGCAGCGTTG +
Preference number: 5 (lower is better)
Translates to: VKQDFPYPSGPARTS*HCCSGGAACTGAAL
Trigger: CAACGCTGCTCCTGTACACGCTGCTCCACCAGAACAGCAATGTCAGGACGTACGTGCTGGCCCGGACGGATATGGAAAATCTTGTTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS GCA 90 bp CTCCAGCATCATCCGAATCACTTCTTCAATGACACTGAGGTCCTGTaGATAATCTGGGAGAGGGACATCGCTGGAGCTCAGGGGACCTCT +
Preference number: 5 (lower is better)
Translates to: LQHHPNHFFNDTEVL*IIWERDIAGAQGTS
Trigger: AGAGGTCCCCTGAGCTCCAGCGATGTCCCTCTCCCAGATTATGCACAGGACCTCAGTGTCATTGAAGAAGTGATTCGGATGATGCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTCACCACCAAACACCAGCAGAGCGTGAGGACTGACAGCAAAGGTCATCTGCACAAAGGAAGACAACCATaGCCGAGATGGCCTCCACTG +
Preference number: 5 (lower is better)
Translates to: FTTKHQQSVRTDSKGHLHKGRQP*PRWPPL
Trigger: CAGTGGAGGCCATCTCGGCAATGGTTGTCTTCCTTT...GTGCAGATGACCTTTGCTGTCAGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS CCA 90 bp TTAGACAGCAAAGAAAACAAACTGATGATCCTCTGGGCAGCGTACTaGTGGAGGGAGCGGAACTGCGCTGACATGTTTGCTAAAGCCGCC +
Preference number: 5 (lower is better)
Translates to: LDSKENKLMILWAAY*WRERNCADMFAKAA
Trigger: GGCGGCTTTAGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGAGGATCATCAGTTTGTTTTCTTTGCTGTCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 90 bp TACTGGTGTAGGGAAGACATGGGCCTTGCATCAGGTACTTGTGACTaGTGCTCTGTCGCAGAACCTCCTTGTGGAAGAGTTGGCAGGAAA +
Preference number: 5 (lower is better)
Translates to: YWCREDMGLASGTCD*CSVAEPPCGRVGRK
Trigger: TTTCCTGCCAACTCTTCCACAAGGAGGTTCTGCGACAGAGCATCAGTCACAAGTACCTGATGCAAGGCCCATGTCTTCCCTACACCAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS GCA 90 bp CAGAACCTCCTTGTGGAAGAGTTGGCAGGAAAGGAAGACAACCATTaGCGAGATGGCCTCCACTGCTATCTCATACGTGATATCCAAGAG +
Preference number: 5 (lower is better)
Translates to: QNLLVEELAGKEDNH*RDGLHCYLIRDIQE
Trigger: CTCTTGGATATCACGTATGAGATAGCAGTGGAGGCCATCTCGGCAATGGTTGTCTTCCTTTCCTGCCAACTCTTCCACAAGGAGGTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS-3UTR CAA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAAAGCCGCCAGGCAGTTaGTGTGCAGGTACTTGTCTC +
Preference number: 5 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEKPPGS*CAGTCL
Trigger: GAGACAAGTACCTGCACACAAACTGCCTGGCGGCTT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 90 bp ATAATAAACAGAGCATTGTGTGTCTGCCAGATGAAGATGTGGTTCTaGCACTCGGCTGAGAGCCTGAGCTCCCTGGTTCTAGATAGGAAG +
Preference number: 5 (lower is better)
Translates to: IINRALCVCQMKMWF*HSAESLSSLVLDRK
Trigger: CTTCCTATCTAGAACCAGGGAGCTCAGGCTCTCAGCCGAGTGTCAGAACCACATCTTCATCTGGCAGACACACAATGCTCTGTTTATTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS CCA 90 bp CAGTTTGTGTGCAGGTACTTGTCTCGAGTCCTGGTCATATTGTACTaGATGGTTCTTATTACCACCAGAATTAGGAGGCTCCCCAGGGAA +
Preference number: 5 (lower is better)
Translates to: QFVCRYLSRVLVILY*MVLITTRIRRLPRE
Trigger: TTCCCTGGGGAGCCTCCTAATTCTGGTGGTAATAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCACACAAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp GGAAGGGTTGATTGGGAAATGAGTGTGATCAGGATGCATGATGTGACATTCTCATGTCGCAGAACCTCCTaGTGGAAGAGTTGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: GRVDWEMSVIRMHDVTFSCRRTS*WKSWQE
Trigger: TTCCTGCCAACTCTTCCACAAGGAGGTTCTGCGACA...TGAGAATGTCACATCATGCATCCTGATCACACTCATTTCCCAATCAACCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACAGTCCAGAGACCAGTaGCTACTCCTGATGCCAGTC +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELQSRDQ*LLLMPV
Trigger: GACTGGCATCAGGAGTAGCAACTGGTCTCTGGACTG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 90 bp TTGTGTGCAGGTACTTGTCTCGAGTCCTGGTCATATTGTACTGGATaGTTCTTATTACCACCAGAATTAGGAGGCTCCCCAGGGAAATCT +
Preference number: 5 (lower is better)
Translates to: LCAGTCLESWSYCTG*FLLPPELGGSPGKS
Trigger: AGATTTCCCTGGGGAGCCTCCTAATTCTGGTGGTAATAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCACACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 90 bp TTGCTCAAAGAGGTCCCGTTTGTAAAGCAAGGCGTACACCAAGTTTaGGTTGTGGTGAAGAGAATTTGTCAGGCAGGAGTTGATGATCTC +
Preference number: 5 (lower is better)
Translates to: LLKEVPFVKQGVHQV*VVVKRICQAGVDDL
Trigger: GAGATCATCAACTCCTGCCTGACAAATTCTCTTCACCACAACCCAAACTTGGTGTACGCCTTGCTTTACAAACGGGACCTCTTTGAGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAACTCAGAACTGCTGGTaGGTGCGGGGAAAGAAAATG +
Preference number: 5 (lower is better)
Translates to: TFPVYFCLALAVQSRLSETQNCW*VRGKKM
Trigger: CATTTTCTTTCCCCGCACCAACCAGCAGTTCTGAGT...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAAAAGGAAGACAACCATaGCCGAGATGGCCTCCACTG +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELKGRQP*PRWPPL
Trigger: CAGTGGAGGCCATCTCGGCAATGGTTGTCTTCCTTT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATGTCGCAGAACCTCCTaGTGGAAGAGTTGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELCRRTS*WKSWQE
Trigger: TTCCTGCCAACTCTTCCACAAGGAGGTTCTGCGACA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp AGGACTGACAGCAAAGGTCATCTGCACGAGGACAGATGTCATGGTCTTAGGTGGCGGAGGTGGCTTTTCTaGTCTGATAAAGTTATACAA +
Preference number: 5 (lower is better)
Translates to: RTDSKGHLHEDRCHGLRWRRWLF*SDKVIQ
Trigger: TTGTATAACTTTATCAGACAAGAAAAGCCACCTCCG...CCACCTAAGACCATGACATCTGTCCTCGTGCAGATGACCTTTGCTGTCAGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAAGCAGGAGACTCTGGTaGGCCAGAGGAGATGTAAGT +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELSRRLW*ARGDVS
Trigger: ACTTACATCTCCTCTGGCCAACCAGAGTCTCCTGCT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAAGGAAGGTATGAGGAATaGATGATGGGAACGGACTGC +
Preference number: 5 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEGRYEE*MMGTDC
Trigger: GCAGTCCGTTCCCATCATCAATTCCTCATACCTTCC...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TCTCTTCCACTCCTCACAAACCCAGGACAAACGGTCTCCCATTTATGCGTGTTATTTCCTGTTCGAGGGTaGTTTTCAACCAAAGACTTG +
Preference number: 5 (lower is better)
Translates to: SLPLLTNPGQTVSHLCVLFPVRG*FSTKDL
Trigger: CAAGTCTTTGGTTGAAAACAACCCTCGAACAGGAAA...TAACACGCATAAATGGGAGACCGTTTGTCCTGGGTTTGTGAGGAGTGGAAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CAA 90 bp ACAGATGTCATGGTCTTAGGTGGGATTTTATACACTTATCTCTTCCACTCCTCATGTCGCAGAACCTCCTaGTGGAAGAGTTGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: TDVMVLGGILYTYLFHSSCRRTS*WKSWQE
Trigger: TTCCTGCCAACTCTTCCACAAGGAGGTTCTGCGACA...TGAGGAGTGGAAGAGATAAGTGTATAAAATCCCACCTAAGACCATGACATCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAGGGATGAGTTCGGAATaGCTCAAAGAGGTCCCGTTT +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELGMSSE*LKEVPF
Trigger: AAACGGGACCTCTTTGAGCAATTCCGAACTCATCCC...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp AGGACTGACAGCAAAGGTCATCTGCACGAGGACAGATGTCATGGTCTTAGGTGGATTCTACTTGTATCTTaGCTGTATGAGCAATTCCCA +
Preference number: 5 (lower is better)
Translates to: RTDSKGHLHEDRCHGLRWILLVS*LYEQFP
Trigger: TGGGAATTGCTCATACAGCAAAGATACAAGTAGAAT...CCACCTAAGACCATGACATCTGTCCTCGTGCAGATGACCTTTGCTGTCAGTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS CCA 90 bp TTCCTGTTCGAGGGTTGTTTTCAACCAAAGACTTGCAAACTGAAATaGTTGCCTCTTCCAATAGCTTCAACTCAGAACTGCTGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: FLFEGCFQPKTCKLK*LPLPIASTQNCWLV
Trigger: CACCAACCAGCAGTTCTGAGTTGAAGCTATTGGAAGAGGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAAACAACCCTCGAACAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS-3UTR CAA 90 bp AAGTCAGAAACCAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGACTCAGAACTGCTGGTaGGTGCGGGGAAAGAAAATG +
Preference number: 5 (lower is better)
Translates to: KSETNFPFGAGCLSMTHLTQNCW*VRGKKM
Trigger: CATTTTCTTTCCCCGCACCAACCAGCAGTTCTGAGT...CAGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTGGTTTCTGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATTTGTCAGGCAGGAGTaGATGATCTCCAGCATCATC +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELFVRQE*MISSII
Trigger: GATGATGCTGGAGATCATCAACTCCTGCCTGACAAA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTAAGGCGTACACCAAGTTaGGGTTGTGGTGAAGAGAAT +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELRRTPS*GCGEEN
Trigger: ATTCTCTTCACCACAACCCAAACTTGGTGTACGCCT...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACAGCGCCACAACCCCTaGTTTAATGATTTCCAAGAC +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELQRHNP*FNDFQD
Trigger: GTCTTGGAAATCATTAAACAAGGGGTTGTGGCGCTG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 90 bp TCACACAGGGCTGTGTACAAACTGTTAAAGTTAATCTGGAAGGTATaGGGAATTGATGATGGGAACGGACTGCTGTCTTGCGTGTTCTTA +
Preference number: 5 (lower is better)
Translates to: SHRAVYKLLKLIWKV*GIDDGNGLLSCVFL
Trigger: TAAGAACACGCAAGACAGCAGTCCGTTCCCATCATCAATTCCTCATACCTTCCAGATTAACTTTAACAGTTTGTACACAGCCCTGTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 90 bp AAAGAAGGAGATCACCAGGTCAATGTTTTGCATTATGTCCTGGAATaGGGGATGAGTTCGGAATTGCTCAAAGAGGTCCCGTTTGTAAAG +
Preference number: 5 (lower is better)
Translates to: KEGDHQVNVLHYVLE*GMSSELLKEVPFVK
Trigger: CTTTACAAACGGGACCTCTTTGAGCAATTCCGAACTCATCCCTCATTCCAGGACATAATGCAAAACATTGACCTGGTGATCTCCTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp GTTTTACACCATTCTACTGTTTTCACCACCAAACACCAGCAGAGCGTGAGGACTTTTTCAACCAAAGACTaGCAAACTGAAATGGTTGCC +
Preference number: 5 (lower is better)
Translates to: VLHHSTVFTTKHQQSVRTFSTKD*QTEMVA
Trigger: GGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAAA...AGTCCTCACGCTCTGCTGGTGTTTGGTGGTGAAAACAGTAGAATGGTGTAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS-3UTR CAA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAATTTCCTGTTCGAGGGTaGTTTTCAACCAAAGACTTG +
Preference number: 5 (lower is better)
Translates to: TFPVYFCLALAVQSRLSEFPVRG*FSTKDL
Trigger: CAAGTCTTTGGTTGAAAACAACCCTCGAACAGGAAA...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp ACGTTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACGGAGGTGGCTTTTCTaGTCTGATAAAGTTATACAA +
Preference number: 5 (lower is better)
Translates to: TFPVYFCLALAVQSRLSERRWLF*SDKVIQ
Trigger: TTGTATAACTTTATCAGACAAGAAAAGCCACCTCCG...TTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAACGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTACGAGTCCTGGTCATATaGTACTGGATGGTTCTTATT +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELRVLVI*YWMVLI
Trigger: AATAAGAACCATCCAGTACAATATGACCAGGACTCG...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATCTTCCTCCACGTATTaGAACTTCAGTTCTGGAAAC +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELSSSTY*NFSSGN
Trigger: GTTTCCAGAACTGAAGTTCAAATACGTGGAGGAAGA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp TTTCCCGTTTATTTTTGTCTCGCCCTTGCAGTACAATCAAGGCTGAGTGAACTATTTTCAACCAAAGACTaGCAAACTGAAATGGTTGCC +
Preference number: 5 (lower is better)
Translates to: FPVYFCLALAVQSRLSELFSTKD*QTEMVA
Trigger: GGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAAA...TAGTTCACTCAGCCTTGATTGTACTGCAAGGGCGAGACAAAAATAAACGGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS-3UTR CAA 90 bp CAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGTGAAATTTAGGTTTCCTGTTCGAGGGTaGTTTTCAACCAAAGACTTG +
Preference number: 5 (lower is better)
Translates to: QFPLWSWLFIYDTSVKFRFPVRG*FSTKDL
Trigger: CAAGTCTTTGGTTGAAAACAACCCTCGAACAGGAAA...CCTAAATTTCACAGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS-3UTR CAA 90 bp CAATTTCCCCTTTGGAGCTGGTTGTTTATCTATGACACATCTGTGAAATTTAGGCGGAGGTGGCTTTTCTaGTCTGATAAAGTTATACAA +
Preference number: 5 (lower is better)
Translates to: QFPLWSWLFIYDTSVKFRRRWLF*SDKVIQ
Trigger: TTGTATAACTTTATCAGACAAGAAAAGCCACCTCCG...CCTAAATTTCACAGATGTGTCATAGATAAACAACCAGCTCCAAAGGGGAAATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236220.2
CDS TCA 72 bp GGGAGAGCGGCTCCTGAGGAATGGGAGAGCGGCTCCTaGGGAATGGGAGAGCGGCTCCTGAGGAATGGGAGA +
Preference number: 6 (lower is better)
Translates to: GRAAPEEWESGS*GMGERLLRNGR
Trigger: TCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS TCA 72 bp ACGGCCCTGGCTCCTGAGGAATGGGAGAGCGGCTCCTaGGGAATGGGAGAGCGGCTCCTGAGGAATGGGAGA +
Preference number: 6 (lower is better)
Translates to: TALAPEEWESGS*GMGERLLRNGR
Trigger: TCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCAGGGCCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS TCA 72 bp GGGAGAGCGGCTCCTGAGGAATGGGAGAGAGGCTCCTaGGGAATGGGAGAGCGGCTCCTGAGGAATGGGAGA +
Preference number: 6 (lower is better)
Translates to: GRAAPEEWERGS*GMGERLLRNGR
Trigger: TCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCTCTCTCCCATTCCTCAGGAGCCGCTCTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS TCA 72 bp GGGAGAGAGGCTCCTGAGGAATGGGAGAGCGGCTCCTaGGGAATGGGAGAGCGGCTGGTTGCTACTCCTGAT +
Preference number: 6 (lower is better)
Translates to: GREAPEEWESGS*GMGERLVATPD
Trigger: ATCAGGAGTAGCAACCAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCTCTCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS CCA 72 bp AGGCTCCTGAGGAATGGGAGAGCGGCTCCTGAGGAATaGGAGAGCGGCTGGTTGCTACTCCTGATGCCAGTC +
Preference number: 6 (lower is better)
Translates to: RLLRNGRAAPEE*ESGWLLLLMPV
Trigger: GACTGGCATCAGGAGTAGCAACCAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCCATTCCTCAGGAGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS CAA 72 bp GCCAGAGGAGATGTAAGTTCTGGGGACGCAGCTGCTTaGCTGCCTGCCCCGCCTAGCGTGAAGACAGTCCAG +
Preference number: 6 (lower is better)
Translates to: ARGDVSSGDAAA*LPAPPSVKTVQ
Trigger: CTGGACTGTCTTCACGCTAGGCGGGGCAGGCAGCAAAGCAGCTGCGTCCCCAGAACTTACATCTCCTCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 72 bp GGGAGAGCGGCTCCTGAGGAATGGGAGAGCGGCTGGTaGCTACTCCTGATGCCAGTCCATACAGCAGTCCTC +
Preference number: 6 (lower is better)
Translates to: GRAAPEEWESGW*LLLMPVHTAVL
Trigger: GAGGACTGCTGTATGGACTGGCATCAGGAGTAGCAACCAGCCGCTCTCCCATTCCTCAGGAGCCGCTCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235692.2
CDS CAA 90 bp CTCTGGTTGGCCAGAGGAGATGTAAGTTCTGGGGACGCAGCTGCTTaGCTGCCTGCCCCGCCTAGCGTGAAGACAGTCCAGAGACCAGTT +
Preference number: 6 (lower is better)
Translates to: LWLARGDVSSGDAAA*LPAPPSVKTVQRPV
Trigger: AACTGGTCTCTGGACTGTCTTCACGCTAGGCGGGGCAGGCAGCAAAGCAGCTGCGTCCCCAGAACTTACATCTCCTCTGGCCAACCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 90 bp TCTGGGCAGCGTACTGGTGGAGGGAGCGGAACTGCGCTGACATGTTaGCTAAAGCCGCCAGGCAGTTTGTGTGCAGGTACTTGTCTCGAG +
Preference number: 6 (lower is better)
Translates to: SGQRTGGGSGTALTC*LKPPGSLCAGTCLE
Trigger: CTCGAGACAAGTACCTGCACACAAACTGCCTGGCGGCTTTAGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 72 bp TTCTGGTGGAGCAGCGTGTACAGGAGCAGCGTTGCCTaGTCAGACGTCTGCTGCTCACACAGGGCTGTGTAC +
Preference number: 6 (lower is better)
Translates to: FWWSSVYRSSVA*SDVCCSHRAVY
Trigger: GTACACAGCCCTGTGTGAGCAGCAGACGTCTGATCAGGCAACGCTGCTCCTGTACACGCTGCTCCACCAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 72 bp CTGGATGTCCTGCGGGTTCCAGTACAAGCCGACCGCTaGGTTGTAGACCAGGGACCAGACGTACGGGATGAA +
Preference number: 6 (lower is better)
Translates to: LDVLRVPVQADR*VVDQGPDVRDE
Trigger: TTCATCCCGTACGTCTGGTCCCTGGTCTACAACTCAGCGGTCGGCTTGTACTGGAACCCGCAGGACATCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS GCA 72 bp ATCCTCTGGGCAGCGTACTGGTGGAGGGAGCGGAACTaGGCTGACATGTTTGCTAAAGCCGCCAGGCAGTTT +
Preference number: 6 (lower is better)
Translates to: ILWAAYWWRERN*ADMFAKAARQF
Trigger: AAACTGCCTGGCGGCTTTAGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 72 bp CGTACTGGTGGAGGGAGCGGAACTGCGCTGACATGTTaGCTAAAGCCGCCAGGCAGTTTGTGTGCAGGTACT +
Preference number: 6 (lower is better)
Translates to: RTGGGSGTALTC*LKPPGSLCAGT
Trigger: AGTACCTGCACACAAACTGCCTGGCGGCTTTAGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 72 bp GATTTTCCATATCCGTCCGGGCCAGCACGTACGTCCTaGCATTGCTGTTCTGGTGGAGCAGCGTGTACAGGA +
Preference number: 6 (lower is better)
Translates to: DFPYPSGPARTS*HCCSGGAACTG
Trigger: TCCTGTACACGCTGCTCCACCAGAACAGCAATGTCAGGACGTACGTGCTGGCCCGGACGGATATGGAAAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 72 bp CCGCTGAGTTGTAGACCAGGGACCAGACGTACGGGATaGAGAACTCCTCAGGCTGCTCTTCCTCCACGTATT +
Preference number: 6 (lower is better)
Translates to: PLSCRPGTRRTG*RTPQAALPPRI
Trigger: AATACGTGGAGGAAGAGCAGCCTGAGGAGTTCTTCATCCCGTACGTCTGGTCCCTGGTCTACAACTCAGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 72 bp CACTTCTTCAATGACACTGAGGTCCTGTGCATAATCTaGGAGAGGGACATCGCTGGAGCTCAGGGGACCTCT +
Preference number: 6 (lower is better)
Translates to: HFFNDTEVLCII*ERDIAGAQGTS
Trigger: AGAGGTCCCCTGAGCTCCAGCGATGTCCCTCTCCCAGATTATGCACAGGACCTCAGTGTCATTGAAGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 90 bp GGGAGCGGAACTGCGCTGACATGTTTGCTAAAGCCGCCAGGCAGTTaGTGTGCAGGTACTTGTCTCGAGTCCTGGTCATATTGTACTGGA +
Preference number: 6 (lower is better)
Translates to: GSGTALTCLLKPPGS*CAGTCLESWSYCTG
Trigger: TCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCACACAAACTGCCTGGCGGCTTTAGCAAACATGTCAGCGCAGTTCCGCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS TCA 72 bp AGAGCATTGTGTGTCTGCCAGATGAAGATGTGGTTCTaGCACTCGGCTGAGAGCCTGAGCTCCCTGGTTCTA +
Preference number: 6 (lower is better)
Translates to: RALCVCQMKMWF*HSAESLSSLVL
Trigger: TAGAACCAGGGAGCTCAGGCTCTCAGCCGAGTGTCAGAACCACATCTTCATCTGGCAGACACACAATGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS TCA 72 bp AGGGAAGACATGGGCCTTGCATCAGGTACTTGTGACTaGTGCTCTGTCGCAGAACCTCCTTGTGGAAGAGTT +
Preference number: 6 (lower is better)
Translates to: REDMGLASGTCD*CSVAEPPCGRV
Trigger: AACTCTTCCACAAGGAGGTTCTGCGACAGAGCATCAGTCACAAGTACCTGATGCAAGGCCCATGTCTTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS GCA 72 bp CATCCGAATCACTTCTTCAATGACACTGAGGTCCTGTaGATAATCTGGGAGAGGGACATCGCTGGAGCTCAG +
Preference number: 6 (lower is better)
Translates to: HPNHFFNDTEVL*IIWERDIAGAQ
Trigger: CTGAGCTCCAGCGATGTCCCTCTCCCAGATTATGCACAGGACCTCAGTGTCATTGAAGAAGTGATTCGGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS GCA 72 bp AGGGACCAGACGTACGGGATGAAGAACTCCTCAGGCTaGTCTTCCTCCACGTATTTGAACTTCAGTTCTGGA +
Preference number: 6 (lower is better)
Translates to: RDQTYGMKNSSG*SSSTYLNFSSG
Trigger: TCCAGAACTGAAGTTCAAATACGTGGAGGAAGAGCAGCCTGAGGAGTTCTTCATCCCGTACGTCTGGTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 72 bp GAAAACAAACTGATGATCCTCTGGGCAGCGTACTGGTaGAGGGAGCGGAACTGCGCTGACATGTTTGCTAAA +
Preference number: 6 (lower is better)
Translates to: ENKLMILWAAYW*RERNCADMFAK
Trigger: TTTAGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGAGGATCATCAGTTTGTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 72 bp AAAGAAAACAAACTGATGATCCTCTGGGCAGCGTACTaGTGGAGGGAGCGGAACTGCGCTGACATGTTTGCT +
Preference number: 6 (lower is better)
Translates to: KENKLMILWAAY*WRERNCADMFA
Trigger: AGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGAGGATCATCAGTTTGTTTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 72 bp ACTGCGCTGACATGTTTGCTAAAGCCGCCAGGCAGTTaGTGTGCAGGTACTTGTCTCGAGTCCTGGTCATAT +
Preference number: 6 (lower is better)
Translates to: TALTCLLKPPGS*CAGTCLESWSY
Trigger: ATATGACCAGGACTCGAGACAAGTACCTGCACACAAACTGCCTGGCGGCTTTAGCAAACATGTCAGCGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 90 bp GCCAGGCAGTTTGTGTGCAGGTACTTGTCTCGAGTCCTGGTCATATaGTACTGGATGGTTCTTATTACCACCAGAATTAGGAGGCTCCCC +
Preference number: 6 (lower is better)
Translates to: ARQFVCRYLSRVLVI*YWMVLITTRIRRLP
Trigger: GGGGAGCCTCCTAATTCTGGTGGTAATAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCACACAAACTGCCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 72 bp GAGGTCCCGTTTGTAAAGCAAGGCGTACACCAAGTTTaGGTTGTGGTGAAGAGAATTTGTCAGGCAGGAGTT +
Preference number: 6 (lower is better)
Translates to: EVPFVKQGVHQV*VVVKRICQAGV
Trigger: AACTCCTGCCTGACAAATTCTCTTCACCACAACCCAAACTTGGTGTACGCCTTGCTTTACAAACGGGACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 72 bp AGAGGTCCCGTTTGTAAAGCAAGGCGTACACCAAGTTaGGGTTGTGGTGAAGAGAATTTGTCAGGCAGGAGT +
Preference number: 6 (lower is better)
Translates to: RGPVCKARRTPS*GCGEENLSGRS
Trigger: ACTCCTGCCTGACAAATTCTCTTCACCACAACCCAAACTTGGTGTACGCCTTGCTTTACAAACGGGACCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 90 bp CTGTTCGAGGGTTGTTTTCAACCAAAGACTTGCAAACTGAAATGGTaGCCTCTTCCAATAGCTTCAACTCAGAACTGCTGGTTGGTGCGG +
Preference number: 6 (lower is better)
Translates to: LFEGCFQPKTCKLKW*PLPIASTQNCWLVR
Trigger: CCGCACCAACCAGCAGTTCTGAGTTGAAGCTATTGGAAGAGGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAAACAACCCTCGAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS TCA 72 bp GATCACCAGGTCAATGTTTTGCATTATGTCCTGGAATaGGGGATGAGTTCGGAATTGCTCAAAGAGGTCCCG +
Preference number: 6 (lower is better)
Translates to: DHQVNVLHYVLE*GMSSELLKEVP
Trigger: CGGGACCTCTTTGAGCAATTCCGAACTCATCCCTCATTCCAGGACATAATGCAAAACATTGACCTGGTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 72 bp GGTACTTGTCTCGAGTCCTGGTCATATTGTACTGGATaGTTCTTATTACCACCAGAATTAGGAGGCTCCCCA +
Preference number: 6 (lower is better)
Translates to: GTCLESWSYCTG*FLLPPELGGSP
Trigger: TGGGGAGCCTCCTAATTCTGGTGGTAATAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 72 bp CCAGGCAGTTTGTGTGCAGGTACTTGTCTCGAGTCCTaGTCATATTGTACTGGATGGTTCTTATTACCACCA +
Preference number: 6 (lower is better)
Translates to: PGSLCAGTCLES*SYCTGWFLLPP
Trigger: TGGTGGTAATAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCACACAAACTGCCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CCA 72 bp TGCAGGTACTTGTCTCGAGTCCTGGTCATATTGTACTaGATGGTTCTTATTACCACCAGAATTAGGAGGCTC +
Preference number: 6 (lower is better)
Translates to: CRYLSRVLVILY*MVLITTRIRRL
Trigger: GAGCCTCCTAATTCTGGTGGTAATAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 90 bp TCCACGTATTTGAACTTCAGTTCTGGAAACTTCTTTAGTCTGTCTTaGGGCAGCGCCACAACCCCTTGTTTAATGATTTCCAAGACCCTT +
Preference number: 6 (lower is better)
Translates to: STYLNFSSGNFFSLS*GSATTPCLMISKTL
Trigger: AAGGGTCTTGGAAATCATTAAACAAGGGGTTGTGGCGCTGCCCAAAGACAGACTAAAGAAGTTTCCAGAACTGAAGTTCAAATACGTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 72 bp GGTTGTTTTCAACCAAAGACTTGCAAACTGAAATGGTaGCCTCTTCCAATAGCTTCAACTCAGAACTGCTGG +
Preference number: 6 (lower is better)
Translates to: GCFQPKTCKLKW*PLPIASTQNCW
Trigger: CCAGCAGTTCTGAGTTGAAGCTATTGGAAGAGGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAAACAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039608.9
ENSMUST00000235692.2
ENSMUST00000236220.2
CDS CAA 72 bp TTTGTGTGCAGGTACTTGTCTCGAGTCCTGGTCATATaGTACTGGATGGTTCTTATTACCACCAGAATTAGG +
Preference number: 6 (lower is better)
Translates to: FVCRYLSRVLVI*YWMVLITTRIR
Trigger: CCTAATTCTGGTGGTAATAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCACACAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9
CDS CAA 72 bp TTGAACTTCAGTTCTGGAAACTTCTTTAGTCTGTCTTaGGGCAGCGCCACAACCCCTTGTTTAATGATTTCC +
Preference number: 6 (lower is better)
Translates to: LNFSSGNFFSLS*GSATTPCLMIS
Trigger: GGAAATCATTAAACAAGGGGTTGTGGCGCTGCCCAAAGACAGACTAAAGAAGTTTCCAGAACTGAAGTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039608.9