Pregenerated sensors for DYDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021790Ensembl transcript IDs: ENSMUST00000022315.12, ENSMUST00000161837.2, ENSMUST00000189865.7
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCTCCCCCATCTCTTaGGTCAAACTTAAGTCTATTCTGGTTATATTTGTGCTGCCGCCA | + |
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Preference number: 1 (lower is better) Translates to: GQRLGFLFGSLSPIS*VKLKSILVIFVLPP Trigger: TGGCGGCAGCACAAATATAACCAGAATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| 3UTR-3UTR TCA 90 bp | AAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAAAACTCTCCCCCATCTCTTaGGTCAAACTTAAGTCTATT | + |
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Preference number: 2 (lower is better) Translates to: KVSELVGRGVGSKFEKRKLSPIS*VKLKSI Trigger: AATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAG...TTTTCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| 3UTR-3UTR TCA 90 bp | GTTTATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGCTCTCCCCCATCTCTTaGGTCAAACTTAAGTCTATT | + |
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Preference number: 2 (lower is better) Translates to: VYKVSELVGRGVGSKFEKLSPIS*VKLKSI Trigger: AATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAG...CTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| 3UTR-3UTR TCA 90 bp | GTTTATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGGGCCCTTGTGATTTaGAGTTTGAAACAGGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: VYKVSELVGRGVGSKFEKRALVI*SLKQVE Trigger: TTCTACCTGTTTCAAACTTCAAATCACAAGGGCCCT...CTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| 3UTR-3UTR CCA 90 bp | GTTTATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGATATTTCTTTTCAGTTaGTTGGTCCTACAGATCTTG | + |
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Preference number: 2 (lower is better) Translates to: VYKVSELVGRGVGSKFEKIFLFS*LVLQIL Trigger: CAAGATCTGTAGGACCAACCAACTGAAAAGAAATAT...CTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATAAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| 3UTR-3UTR CCA 90 bp | CCCTTTATTTTAAGGATACAGTTGAAGCCTGTTTATAAAGTTAGTGAGTTGGTGAACTTAAGTCTATTCTaGTTATATTTGTGCTGCCGC | + |
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Preference number: 2 (lower is better) Translates to: PFILRIQLKPVYKVSELVNLSLF*LYLCCR Trigger: GCGGCAGCACAAATATAACCAGAATAGACTTAAGTT...CACCAACTCACTAACTTTATAAACAGGCTTCAACTGTATCCTTAAAATAAAGGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| 3UTR TCA 72 bp | CTGGGTTTCCTTTTCGGCTCCCTCTCCCCCATCTCTTaGGTCAAACTTAAGTCTATTCTGGTTATATTTGTG | + |
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Preference number: 3 (lower is better) Translates to: LGFLFGSLSPIS*VKLKSILVIFV Trigger: CACAAATATAACCAGAATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAGGGAGCCGAAAAGGAAACCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| 3UTR TCA 72 bp | AAATATTTCTTTTCAGTTGGTTGGTCCTACAGATCTTaGTCAATGTTTAAGGTAACAGCTCGGCTGCTCGGG | + |
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Preference number: 3 (lower is better) Translates to: KYFFSVGWSYRS*SMFKVTARLLG Trigger: CCCGAGCAGCCGAGCTGTTACCTTAAACATTGATCAAGATCTGTAGGACCAACCAACTGAAAAGAAATATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| 3UTR-3UTR CAA 90 bp | GTTTATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGTTTCTTTTCAGTTGGTaGGTCCTACAGATCTTGATC | + |
|
Preference number: 3 (lower is better) Translates to: VYKVSELVGRGVGSKFEKFLFSW*VLQILI Trigger: GATCAAGATCTGTAGGACCAACCAACTGAAAAGAAA...CTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | GGTAACAGCTCGGCTGCTCGGGGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCACTTCTGTGAGACCTTaGGTTAGGCATGTCCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: GNSSAARGQRLGFLFGSLTSVRP*VRHVPR Trigger: TCTGGGGACATGCCTAACTCAAGGTCTCACAGAAGT...GAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCCCCGAGCAGCCGAGCTGTTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | AACAGCTCGGCTGCTCGGGGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCTCCCTCTGGCAACTTCTGTaGGACCTTGAGTTAGGCATG | + |
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Preference number: 4 (lower is better) Translates to: NSSAARGQRLGFLFGSLSLWQLL*DLELGM Trigger: CATGCCTAACTCAAGGTCTCACAGAAGTTGCCAGAG...GGAGAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCCCCGAGCAGCCGAGCTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR GCA 90 bp | AACAGCTCGGCTGCTCGGGGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCTCCCGCTCCAGCATTTCCTaGTCCATCATGGCTAATTCT | + |
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Preference number: 4 (lower is better) Translates to: NSSAARGQRLGFLFGSLSRSSIS*SIMANS Trigger: AGAATTAGCCATGATGGAGCAGGAAATGCTGGAGCG...GGAGAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCCCCGAGCAGCCGAGCTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | GGTAACAGCTCGGCTGCTCGGGGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCAATGCCAACTGCTGCTaGAATAAGAGTTCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GNSSAARGQRLGFLFGSLNANCC*NKSSSA Trigger: AGCAGAAGAACTCTTATTTCAGCAGCAGTTGGCATT...GAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCCCCGAGCAGCCGAGCTGTTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | AACAGCTCGGCTGCTCGGGGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCTCCCATCATGCTCTTAAATaGTTTTTCTTGCCCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: NSSAARGQRLGFLFGSLSHHALK*FFLPCL Trigger: GAGACAGGGCAAGAAAAATCATTTAAGAGCATGATG...GGAGAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCCCCGAGCAGCCGAGCTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | GTTTATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGACTTCTGTGAGACCTTaGGTTAGGCATGTCCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: VYKVSELVGRGVGSKFEKTSVRP*VRHVPR Trigger: TCTGGGGACATGCCTAACTCAAGGTCTCACAGAAGT...CTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | TATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAACTTCTGTGAGACCTTaGGTTAGGCATGTCCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: YKVSELVGRGVGSKFEKRTSVRP*VRHVPR Trigger: TCTGGGGACATGCCTAACTCAAGGTCTCACAGAAGT...TCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR GCA 90 bp | AAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAAAACGCTCCAGCATTTCCTaGTCCATCATGGCTAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: KVSELVGRGVGSKFEKRKRSSIS*SIMANS Trigger: AGAATTAGCCATGATGGAGCAGGAAATGCTGGAGCG...TTTTCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | TTTTCGGCTCCCTCTCCCCCATCTCTTGAGTCAAACTTAAGTCTATTCTGGTTAAATGCCAACTGCTGCTaGAATAAGAGTTCTTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: FSAPSPPSLESNLSLFWLNANCC*NKSSSA Trigger: AGCAGAAGAACTCTTATTTCAGCAGCAGTTGGCATT...TAACCAGAATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAGGGAGCCGAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | AAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAAAAAATGCCAACTGCTGCTaGAATAAGAGTTCTTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: KVSELVGRGVGSKFEKRKNANCC*NKSSSA Trigger: AGCAGAAGAACTCTTATTTCAGCAGCAGTTGGCATT...TTTTCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | GTTTCCTTTTCGGCTCCCTCTCCCCCATCTCTTGAGTCAAACTTAAGTCTATTCTGTCTCGAAATCTTCTaGCTTCTGTTTCTCTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: VSFSAPSPPSLESNLSLFCLEIF*LLFLFL Trigger: CAAAAAGAGAAACAGAAGTCAGAAGATTTCGAGACA...GAATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAGGGAGCCGAAAAGGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | TTTTCGGCTCCCTCTCCCCCATCTCTTGAGTCAAACTTAAGTCTATTCTGGTTACATCATGCTCTTAAATaGTTTTTCTTGCCCTGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: FSAPSPPSLESNLSLFWLHHALK*FFLPCL Trigger: GAGACAGGGCAAGAAAAATCATTTAAGAGCATGATG...TAACCAGAATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAGGGAGCCGAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR CCA 90 bp | GTTTATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGTTTCCTGCTCCATCATaGCTAATTCTCTCTCATGCT | + |
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Preference number: 4 (lower is better) Translates to: VYKVSELVGRGVGSKFEKFPAPS*LILSHA Trigger: AGCATGAGAGAGAATTAGCCATGATGGAGCAGGAAA...CTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CCA 90 bp | AAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAAAATTTCCTGCTCCATCATaGCTAATTCTCTCTCATGCT | + |
|
Preference number: 4 (lower is better) Translates to: KVSELVGRGVGSKFEKRKFPAPS*LILSHA Trigger: AGCATGAGAGAGAATTAGCCATGATGGAGCAGGAAA...TTTTCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CCA 90 bp | TATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGATTTCCTGCTCCATCATaGCTAATTCTCTCTCATGCT | + |
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Preference number: 4 (lower is better) Translates to: YKVSELVGRGVGSKFEKRFPAPS*LILSHA Trigger: AGCATGAGAGAGAATTAGCCATGATGGAGCAGGAAA...TCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | CCCTTTATTTTAAGGATACAGTTGAAGCCTGTTTATAAAGTTAGTGAGTTGGTGCTCTGGCAACTTCTGTaGGACCTTGAGTTAGGCATG | + |
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Preference number: 4 (lower is better) Translates to: PFILRIQLKPVYKVSELVLWQLL*DLELGM Trigger: CATGCCTAACTCAAGGTCTCACAGAAGTTGCCAGAG...CACCAACTCACTAACTTTATAAACAGGCTTCAACTGTATCCTTAAAATAAAGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | AAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAAAACATCATGCTCTTAAATaGTTTTTCTTGCCCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: KVSELVGRGVGSKFEKRKHHALK*FFLPCL Trigger: GAGACAGGGCAAGAAAAATCATTTAAGAGCATGATG...TTTTCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | GTTTATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGTGTCTCGAAATCTTCTaGCTTCTGTTTCTCTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: VYKVSELVGRGVGSKFEKCLEIF*LLFLFL Trigger: CAAAAAGAGAAACAGAAGTCAGAAGATTTCGAGACA...CTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR TCA 90 bp | CCCTTTATTTTAAGGATACAGTTGAAGCCTGTTTATAAAGTTAGTGAGTTGGTGTGTCTCGAAATCTTCTaGCTTCTGTTTCTCTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: PFILRIQLKPVYKVSELVCLEIF*LLFLFL Trigger: CAAAAAGAGAAACAGAAGTCAGAAGATTTCGAGACA...CACCAACTCACTAACTTTATAAACAGGCTTCAACTGTATCCTTAAAATAAAGGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | GGTAACAGCTCGGCTGCTCGGGGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCAGGCTAAATATTCAATaGGATCCAATGGGCGAACTC | + |
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Preference number: 5 (lower is better) Translates to: GNSSAARGQRLGFLFGSLRLNIQ*DPMGEL Trigger: GAGTTCGCCCATTGGATCCAATTGAATATTTAGCCT...GAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCCCCGAGCAGCCGAGCTGTTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | AACAGCTCGGCTGCTCGGGGACAAAGGCTGGGTTTCCTTTTCGGCTCCCTCTCCCTTCTGTTTCTCTTTTaGTTGCATTTCCAACTCCAA | + |
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Preference number: 5 (lower is better) Translates to: NSSAARGQRLGFLFGSLSLLFLF*LHFQLQ Trigger: TTGGAGTTGGAAATGCAACAAAAAGAGAAACAGAAG...GGAGAGGGAGCCGAAAAGGAAACCCAGCCTTTGTCCCCGAGCAGCCGAGCTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS TCA 90 bp | CCAACTGGAATGCCAACTGCTGCTGAAATAAGAGTTCTTCTGCTTTaGGTCGCTCCAGCATTTCCTGCTCCATCATGGCTAATTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: PTGMPTAAEIRVLLL*VAPAFPAPSWLILS Trigger: AGAGAGAATTAGCCATGATGGAGCAGGAAATGCTGGAGCGACTCAAAGCAGAAGAACTCTTATTTCAGCAGCAGTTGGCATTCCAGTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS GCA 90 bp | AGTCGCTCCAGCATTTCCTGCTCCATCATGGCTAATTCTCTCTCATaGTCCAACGTAATCATTTCTCTCTGTCTCATTTGCTCCATGTTC | + |
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Preference number: 5 (lower is better) Translates to: SRSSISCSIMANSLS*SNVIISLCLICSMF Trigger: GAACATGGAGCAAATGAGACAGAGAGAAATGATTACGTTGGAGCATGAGAGAGAATTAGCCATGATGGAGCAGGAAATGCTGGAGCGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS TCA 90 bp | CTAAATATTCAATTGGATCCAATGGGCGAACTCTGGCAACTTCTGTaGGACCTTGAGTTAGGCATGTCCCCAGACACTTTTGAAGATATC | + |
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Preference number: 5 (lower is better) Translates to: LNIQLDPMGELWQLL*DLELGMSPDTFEDI Trigger: GATATCTTCAAAAGTGTCTGGGGACATGCCTAACTCAAGGTCTCACAGAAGTTGCCAGAGTTCGCCCATTGGATCCAATTGAATATTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | TTTTCGGCTCCCTCTCCCCCATCTCTTGAGTCAAACTTAAGTCTATTCTGGTTAAGGCTAAATATTCAATaGGATCCAATGGGCGAACTC | + |
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Preference number: 5 (lower is better) Translates to: FSAPSPPSLESNLSLFWLRLNIQ*DPMGEL Trigger: GAGTTCGCCCATTGGATCCAATTGAATATTTAGCCT...TAACCAGAATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAGGGAGCCGAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS GCA 90 bp | CTAGCCGTGCTCTCCATGCTCATCATGCTCTTAAATGATTTTTCTTaGCCTGTCTCGAAATCTTCTGACTTCTGTTTCTCTTTTTGTTGC | + |
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Preference number: 5 (lower is better) Translates to: LAVLSMLIMLLNDFS*PVSKSSDFCFSFCC Trigger: GCAACAAAAAGAGAAACAGAAGTCAGAAGATTTCGAGACAGGGCAAGAAAAATCATTTAAGAGCATGATGAGCATGGAGAGCACGGCTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | GTTTCCTTTTCGGCTCCCTCTCCCCCATCTCTTGAGTCAAACTTAAGTCTATTCCTTCTGTTTCTCTTTTaGTTGCATTTCCAACTCCAA | + |
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Preference number: 5 (lower is better) Translates to: VSFSAPSPPSLESNLSLFLLFLF*LHFQLQ Trigger: TTGGAGTTGGAAATGCAACAAAAAGAGAAACAGAAG...GAATAGACTTAAGTTTGACTCAAGAGATGGGGGAGAGGGAGCCGAAAAGGAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | AAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAAAACTGTTTCTCTTTTTGTaGCATTTCCAACTCCAACTG | + |
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Preference number: 5 (lower is better) Translates to: KVSELVGRGVGSKFEKRKLFLFL*HFQLQL Trigger: CAGTTGGAGTTGGAAATGCAACAAAAAGAGAAACAG...TTTTCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | AAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGAAAACATTATCAGATAACATaGGCTCATCAAGTTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: KVSELVGRGVGSKFEKRKHYQIT*AHQVLP Trigger: TGGAAGAACTTGATGAGCCAATGTTATCTGATAATG...TTTTCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | TATAAAGTTAGTGAGTTGGTGGGAAGGGGAGTAGGGTCCAAGTTTGAAAAGAGACATTATCAGATAACATaGGCTCATCAAGTTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: YKVSELVGRGVGSKFEKRHYQIT*AHQVLP Trigger: TGGAAGAACTTGATGAGCCAATGTTATCTGATAATG...TCTCTTTTCAAACTTGGACCCTACTCCCCTTCCCACCAACTCACTAACTTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022315.12 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | CCCTTTATTTTAAGGATACAGTTGAAGCCTGTTTATAAAGTTAGTGAGTTGGTGAGGCTAAATATTCAATaGGATCCAATGGGCGAACTC | + |
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Preference number: 5 (lower is better) Translates to: PFILRIQLKPVYKVSELVRLNIQ*DPMGEL Trigger: GAGTTCGCCCATTGGATCCAATTGAATATTTAGCCT...CACCAACTCACTAACTTTATAAACAGGCTTCAACTGTATCCTTAAAATAAAGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | CCCTTTATTTTAAGGATACAGTTGAAGCCTGTTTATAAAGTTAGTGAGTTGGTGCTGTTTCTCTTTTTGTaGCATTTCCAACTCCAACTG | + |
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Preference number: 5 (lower is better) Translates to: PFILRIQLKPVYKVSELVLFLFL*HFQLQL Trigger: CAGTTGGAGTTGGAAATGCAACAAAAAGAGAAACAG...CACCAACTCACTAACTTTATAAACAGGCTTCAACTGTATCCTTAAAATAAAGGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS-3UTR CAA 90 bp | CCCTTTATTTTAAGGATACAGTTGAAGCCTGTTTATAAAGTTAGTGAGTTGGTGCTTCTGTTTCTCTTTTaGTTGCATTTCCAACTCCAA | + |
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Preference number: 5 (lower is better) Translates to: PFILRIQLKPVYKVSELVLLFLF*LHFQLQ Trigger: TTGGAGTTGGAAATGCAACAAAAAGAGAAACAGAAG...CACCAACTCACTAACTTTATAAACAGGCTTCAACTGTATCCTTAAAATAAAGGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS TCA 72 bp | CAATTGGATCCAATGGGCGAACTCTGGCAACTTCTGTaGGACCTTGAGTTAGGCATGTCCCCAGACACTTTT | + |
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Preference number: 6 (lower is better) Translates to: QLDPMGELWQLL*DLELGMSPDTF Trigger: AAAAGTGTCTGGGGACATGCCTAACTCAAGGTCTCACAGAAGTTGCCAGAGTTCGCCCATTGGATCCAATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS TCA 72 bp | ATGCCAACTGCTGCTGAAATAAGAGTTCTTCTGCTTTaGGTCGCTCCAGCATTTCCTGCTCCATCATGGCTA | + |
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Preference number: 6 (lower is better) Translates to: MPTAAEIRVLLL*VAPAFPAPSWL Trigger: TAGCCATGATGGAGCAGGAAATGCTGGAGCGACTCAAAGCAGAAGAACTCTTATTTCAGCAGCAGTTGGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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| CDS GCA 72 bp | AGCATTTCCTGCTCCATCATGGCTAATTCTCTCTCATaGTCCAACGTAATCATTTCTCTCTGTCTCATTTGC | + |
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Preference number: 6 (lower is better) Translates to: SISCSIMANSLS*SNVIISLCLIC Trigger: GCAAATGAGACAGAGAGAAATGATTACGTTGGAGCATGAGAGAGAATTAGCCATGATGGAGCAGGAAATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022315.12 ENSMUST00000161837.2 ENSMUST00000189865.7 |
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