Pregenerated sensors for DUSP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031530Ensembl transcript IDs: ENSMUST00000033930.5
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GCCCTGTGGTTGGCCAAGGAGAAATGGAGACGGAGCCTGGTCACCTaGTCCCCCACTGGTCAGTCCCTATTTGCTGTTCACAGGTGGCTG | + |
Preference number: 1 (lower is better) Translates to: ALWLAKEKWRRSLVT*SPTGQSLFAVHRWL Trigger: CAGCCACCTGTGAACAGCAAATAGGGACTGACCAGTGGGGGATCAGGTGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAACCACAGGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 90 bp | CCTAGCTGGCCCTGTGGTTGGCCAAGGAGAAATGGAGACGGAGCCTaGTCACCTGATCCCCCACTGGTCAGTCCCTATTTGCTGTTCACA | + |
Preference number: 1 (lower is better) Translates to: PSWPCGWPRRNGDGA*SPDPPLVSPYLLFT Trigger: TGTGAACAGCAAATAGGGACTGACCAGTGGGGGATCAGGTGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAACCACAGGGCCAGCTAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 90 bp | ATGTGTATTCAAAGTCGTTATTGCCATCCTAGCTGGCCCTGTGGTTaGCCAAGGAGAAATGGAGACGGAGCCTGGTCACCTGATCCCCCA | + |
Preference number: 1 (lower is better) Translates to: MCIQSRYCHPSWPCG*PRRNGDGAWSPDPP Trigger: TGGGGGATCAGGTGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAACCACAGGGCCAGCTAGGATGGCAATAACGACTTTGAATACACAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 90 bp | TGTTTGTTTTTAATGTGTATTCAAAGTCGTTATTGCCATCCTAGCTaGCCCTGTGGTTGGCCAAGGAGAAATGGAGACGGAGCCTGGTCA | + |
Preference number: 1 (lower is better) Translates to: CLFLMCIQSRYCHPS*PCGWPRRNGDGAWS Trigger: TGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAACCACAGGGCCAGCTAGGATGGCAATAACGACTTTGAATACACATTAAAAACAAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR TCA 90 bp | CCAATGTATCCGCGAGAGGGAGATTCATTTTTAGTTCATCTTCAGTaGTCTGGTTCTGATCTGGCCTTACCAAATGATTCACGGCAGGAA | + |
Preference number: 1 (lower is better) Translates to: PMYPREGDSFLVHLQ*SGSDLALPNDSRQE Trigger: TTCCTGCCGTGAATCATTTGGTAAGGCCAGATCAGAACCAGATCACTGAAGATGAACTAAAAATGAATCTCCCTCTCGCGGATACATTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR GCA 90 bp | GCATGTCACCCTGCGTCTGATGGTAACCATGGTGACCACCTACCCGACGCTCCTTTGGTTGCGCACATTTaGCAGGATCTGTGGGGTTTC | + |
Preference number: 2 (lower is better) Translates to: ACHPASDGNHGDHLPDAPLVAHI*QDLWGF Trigger: GAAACCCCACAGATCCTGGCAAATGTGCGCAACCAA...AGGAGCGTCGGGTAGGTGGTCACCATGGTTACCATCAGACGCAGGGTGACATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR GCA 90 bp | GCATGTCACCCTGCGTCTGATGGTAACCATGGTGACCACCTACCCGACGCTCCTGAGTCACTAGACTCCTaGACACACATGCTGAGGTTC | + |
Preference number: 2 (lower is better) Translates to: ACHPASDGNHGDHLPDAPESLDS*THMLRF Trigger: GAACCTCAGCATGTGTGTGCAGGAGTCTAGTGACTC...AGGAGCGTCGGGTAGGTGGTCACCATGGTTACCATCAGACGCAGGGTGACATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR CCA 90 bp | TTTCCCTCTCCACTCAATAAAAATTGGTTGCGCACATTTGCCAGGATCTGTGGGTGGCTGGCAACTGGCTaGGGGCCGACTCTGGATTTG | + |
Preference number: 2 (lower is better) Translates to: FPSPLNKNWLRTFARICGWLATG*GPTLDL Trigger: CAAATCCAGAGTCGGCCCCCAGCCAGTTGCCAGCCA...CCCACAGATCCTGGCAAATGTGCGCAACCAATTTTTATTGAGTGGAGAGGGAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR CCA 90 bp | CTCGACTGTGTGACCTCAACAGAAATATCTCCCAGAGTCACTAGACTCCTGCACAGCTGGCCCTGTGGTTaGCCAAGGAGAAATGGAGAC | + |
Preference number: 2 (lower is better) Translates to: LDCVTSTEISPRVTRLLHSWPCG*PRRNGD Trigger: GTCTCCATTTCTCCTTGGCCAACCACAGGGCCAGCT...GTGCAGGAGTCTAGTGACTCTGGGAGATATTTCTGTTGAGGTCACACAGTCGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR CCA 90 bp | CCCCAGCCAAACAGACCGCTGGAGAGAAAAATCTCACGTGGCTGGGTCAGTGGGCCACTCAATAAAAATTaGTTGCGCACATTTGCCAGG | + |
Preference number: 2 (lower is better) Translates to: PQPNRPLERKISRGWVSGPLNKN*LRTFAR Trigger: CCTGGCAAATGTGCGCAACCAATTTTTATTGAGTGG...CCCACTGACCCAGCCACGTGAGATTTTTCTCTCCAGCGGTCTGTTTGGCTGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR GCA 90 bp | CTGCTCGACTGTGTGACCTCAACAGAAATATCTCCCAGAGTCACTAGACTCCTGTGGTCAGTCCCTATTTaGTGTTCACAGGTGGCTGGC | + |
Preference number: 2 (lower is better) Translates to: LLDCVTSTEISPRVTRLLWSVPI*CSQVAG Trigger: GCCAGCCACCTGTGAACAGCAAATAGGGACTGACCA...CAGGAGTCTAGTGACTCTGGGAGATATTTCTGTTGAGGTCACACAGTCGAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR CCA 90 bp | TTTCCCTCTCCACTCAATAAAAATTGGTTGCGCACATTTGCCAGGATCTGTGGGTTGGCCAAGGAGAAATaGAGACGGAGCCTGGTCACC | + |
Preference number: 2 (lower is better) Translates to: FPSPLNKNWLRTFARICGLAKEK*RRSLVT Trigger: GGTGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAA...CCCACAGATCCTGGCAAATGTGCGCAACCAATTTTTATTGAGTGGAGAGGGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR GCA 72 bp | CCTGGTCACCTGATCCCCCACTGGTCAGTCCCTATTTaGTGTTCACAGGTGGCTGGCAACTGGCTGGGGGCC | + |
Preference number: 3 (lower is better) Translates to: PGHLIPHWSVPI*CSQVAGNWLGA Trigger: GGCCCCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGACTGACCAGTGGGGGATCAGGTGACCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 72 bp | CCACTGGTCAGTCCCTATTTGCTGTTCACAGGTGGCTaGCAACTGGCTGGGGGCCGACTCTGGATTTGGGGT | + |
Preference number: 3 (lower is better) Translates to: PLVSPYLLFTGG*QLAGGRLWIWG Trigger: ACCCCAAATCCAGAGTCGGCCCCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGACTGACCAGTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 72 bp | TCAGTCCCTATTTGCTGTTCACAGGTGGCTGGCAACTaGCTGGGGGCCGACTCTGGATTTGGGGTCCAGAGA | + |
Preference number: 3 (lower is better) Translates to: SVPICCSQVAGN*LGADSGFGVQR Trigger: TCTCTGGACCCCAAATCCAGAGTCGGCCCCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGACTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 72 bp | GAAATGGAGACGGAGCCTGGTCACCTGATCCCCCACTaGTCAGTCCCTATTTGCTGTTCACAGGTGGCTGGC | + |
Preference number: 3 (lower is better) Translates to: EMETEPGHLIPH*SVPICCSQVAG Trigger: GCCAGCCACCTGTGAACAGCAAATAGGGACTGACCAGTGGGGGATCAGGTGACCAGGCTCCGTCTCCATTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 72 bp | CCCTGTGGTTGGCCAAGGAGAAATGGAGACGGAGCCTaGTCACCTGATCCCCCACTGGTCAGTCCCTATTTG | + |
Preference number: 3 (lower is better) Translates to: PCGWPRRNGDGA*SPDPPLVSPYL Trigger: CAAATAGGGACTGACCAGTGGGGGATCAGGTGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAACCACAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR TCA 72 bp | TTGGCCAAGGAGAAATGGAGACGGAGCCTGGTCACCTaGTCCCCCACTGGTCAGTCCCTATTTGCTGTTCAC | + |
Preference number: 3 (lower is better) Translates to: LAKEKWRRSLVT*SPTGQSLFAVH Trigger: GTGAACAGCAAATAGGGACTGACCAGTGGGGGATCAGGTGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 72 bp | CAAAGTCGTTATTGCCATCCTAGCTGGCCCTGTGGTTaGCCAAGGAGAAATGGAGACGGAGCCTGGTCACCT | + |
Preference number: 3 (lower is better) Translates to: QSRYCHPSWPCG*PRRNGDGAWSP Trigger: AGGTGACCAGGCTCCGTCTCCATTTCTCCTTGGCCAACCACAGGGCCAGCTAGGATGGCAATAACGACTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 72 bp | GGAAGAAACCACTCTATCCCCAGCCAAACAGACCGCTaGAGAGAAAAATCTCACGTGGCTGGGTCAGTGGGC | + |
Preference number: 3 (lower is better) Translates to: GRNHSIPSQTDR*REKSHVAGSVG Trigger: GCCCACTGACCCAGCCACGTGAGATTTTTCTCTCCAGCGGTCTGTTTGGCTGGGGATAGAGTGGTTTCTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR CAA 90 bp | CATGTCACCCTGCGTCTGATGGTAACCATGGTGACCACCTACCCGACGCTCCTCCTCAATAAAAATTGGTaGCGCACATTTGCCAGGATC | + |
Preference number: 3 (lower is better) Translates to: HVTLRLMVTMVTTYPTLLLNKNW*RTFARI Trigger: GATCCTGGCAAATGTGCGCAACCAATTTTTATTGAG...GAGGAGCGTCGGGTAGGTGGTCACCATGGTTACCATCAGACGCAGGGTGACATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR TCA 72 bp | TGCTCACACACCTGTGTGTTTCTCTGCTCGACTGTGTaGCCTCAACAGAAATATCTCCCAGAGTCACTAGAC | + |
Preference number: 3 (lower is better) Translates to: CSHTCVFLCSTV*PQQKYLPESLD Trigger: GTCTAGTGACTCTGGGAGATATTTCTGTTGAGGTCACACAGTCGAGCAGAGAAACACACAGGTGTGTGAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CCA 72 bp | TTAATGTGTATTCAAAGTCGTTATTGCCATCCTAGCTaGCCCTGTGGTTGGCCAAGGAGAAATGGAGACGGA | + |
Preference number: 3 (lower is better) Translates to: LMCIQSRYCHPS*PCGWPRRNGDG Trigger: TCCGTCTCCATTTCTCCTTGGCCAACCACAGGGCCAGCTAGGATGGCAATAACGACTTTGAATACACATTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR-3UTR CAA 90 bp | GGAGGGCGTTTCAGAGTATTCACCAGATTTTGTAACAAGAATTTCTTGGTATGTATTGGTTGCGCACATTaGCCAGGATCTGTGGGGTTT | + |
Preference number: 3 (lower is better) Translates to: GGRFRVFTRFCNKNFLVCIGCAH*PGSVGF Trigger: AAACCCCACAGATCCTGGCAAATGTGCGCAACCAAT...ACATACCAAGAAATTCTTGTTACAAAATCTGGTGAATACTCTGAAACGCCCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR TCA 72 bp | CCGCGAGAGGGAGATTCATTTTTAGTTCATCTTCAGTaGTCTGGTTCTGATCTGGCCTTACCAAATGATTCA | + |
Preference number: 3 (lower is better) Translates to: PREGDSFLVHLQ*SGSDLALPNDS Trigger: TGAATCATTTGGTAAGGCCAGATCAGAACCAGATCACTGAAGATGAACTAAAAATGAATCTCCCTCTCGCGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR GCA 72 bp | CCTCAACAGAAATATCTCCCAGAGTCACTAGACTCCTaGACACACATGCTGAGGTTCTCAATATGCATTAAA | + |
Preference number: 3 (lower is better) Translates to: PQQKYLPESLDS*THMLRFSICIK Trigger: TTTAATGCATATTGAGAACCTCAGCATGTGTGTGCAGGAGTCTAGTGACTCTGGGAGATATTTCTGTTGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR TCA 72 bp | AATAATGAGGTAAATTTCTACCTGCAAAGTAAAAACTaGCACAGAAACCAAGTCTTCTCTGGCAGCGGAAAC | + |
Preference number: 3 (lower is better) Translates to: NNEVNFYLQSKN*HRNQVFSGSGN Trigger: GTTTCCGCTGCCAGAGAAGACTTGGTTTCTGTGTCAGTTTTTACTTTGCAGGTAGAAATTTACCTCATTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR TCA 90 bp | CCCCCACTGGTCAGTCCCTATTTGCTGTTCACAGGTGGCTGGCAACTGGCTGGGAGCTGGGGGAGGTGGTaGTGGGGCTGTGCAGGTACG | + |
Preference number: 4 (lower is better) Translates to: PPLVSPYLLFTGGWQLAGSWGRW*WGCAGT Trigger: CGTACCTGCACAGCCCCATCACCACCTCCCCCAGCT...CCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGACTGACCAGTGGGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR GCA 90 bp | GCATGTCACCCTGCGTCTGATGGTAACCATGGTGACCACCTACCCGACGCTCCTCCAGCAGCAGGCACTTaGCGCCGCTCAGCAGCCCCA | + |
Preference number: 4 (lower is better) Translates to: ACHPASDGNHGDHLPDAPPAAGT*RRSAAP Trigger: TGGGGCTGCTGAGCGGCGGCAAGTGCCTGCTGCTGG...AGGAGCGTCGGGTAGGTGGTCACCATGGTTACCATCAGACGCAGGGTGACATGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR GCA 90 bp | GTCCCTATTTGCTGTTCACAGGTGGCTGGCAACTGGCTGGGGGCCGACTCTGGAGAGCCAGAAACGGCCTaGAGTCCAGCAGCAGGCACT | + |
Preference number: 4 (lower is better) Translates to: VPICCSQVAGNWLGADSGEPETA*SPAAGT Trigger: AGTGCCTGCTGCTGGACTGCAGGCCGTTTCTGGCTC...TCCAGAGTCGGCCCCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR GCA 90 bp | CCCCAGCCAAACAGACCGCTGGAGAGAAAAATCTCACGTGGCTGGGTCAGTGGGGTGGTGATGGGGCTGTaGAGGTACGGCAGGTTACTG | + |
Preference number: 4 (lower is better) Translates to: PQPNRPLERKISRGWVSGVVMGL*RYGRLL Trigger: CAGTAACCTGCCGTACCTGCACAGCCCCATCACCAC...CCCACTGACCCAGCCACGTGAGATTTTTCTCTCCAGCGGTCTGTTTGGCTGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | GCAGGAAAATCTGAACGGCACCCAGTTTTCCAGGAGCACCTTGGTAAAGATGGCGGTACGGCAGGTTACTaGGGGCCGCGTGCACGCCCA | + |
Preference number: 4 (lower is better) Translates to: AGKSERHPVFQEHLGKDGGTAGY*GPRARP Trigger: TGGGCGTGCACGCGGCCCCCAGTAACCTGCCGTACC...GCCATCTTTACCAAGGTGCTCCTGGAAAACTGGGTGCCGTTCAGATTTTCCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | ACCAAGTCTTCTCTGGCAGCGGAAACCGCCGTTATTGCTTATGTTAGAGTGTTTAGCCCCAAGGCGCCGTaGCTGCCGCTGCCGTTGCCG | + |
Preference number: 4 (lower is better) Translates to: TKSSLAAETAVIAYVRVFSPKAP*LPLPLP Trigger: CGGCAACGGCAGCGGCAGCCACGGCGCCTTGGGGCT...AAACACTCTAACATAAGCAATAACGGCGGTTTCCGCTGCCAGAGAAGACTTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | CTGCTCGACTGTGTGACCTCAACAGAAATATCTCCCAGAGTCACTAGACTCCTGGGGAGGTACAGGGGGTaGGATGGCGGCCAGGGCCTT | + |
Preference number: 4 (lower is better) Translates to: LLDCVTSTEISPRVTRLLGRYRG*DGGQGL Trigger: AAGGCCCTGGCCGCCATCCCACCCCCTGTACCTCCC...CAGGAGTCTAGTGACTCTGGGAGATATTTCTGTTGAGGTCACACAGTCGAGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | GCATGTCACCCTGCGTCTGATGGTAACCATGGTGACCACCTACCCGACGCTCCTCTGATGTCGGCCTTGTaGTTGTCTTCGACGGGGATG | + |
Preference number: 4 (lower is better) Translates to: ACHPASDGNHGDHLPDAPLMSAL*LSSTGM Trigger: CATCCCCGTCGAAGACAACCACAAGGCCGACATCAG...AGGAGCGTCGGGTAGGTGGTCACCATGGTTACCATCAGACGCAGGGTGACATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR TCA 90 bp | GCAGGAAAATCTGAACGGCACCCAGTTTTCCAGGAGCACCTTGGTAAAGATGGCGCTCGTCGTAGACGATaGCAGCCGAGTAGAGGCCAG | + |
Preference number: 4 (lower is better) Translates to: AGKSERHPVFQEHLGKDGARRRR*QPSRGQ Trigger: CTGGCCTCTACTCGGCTGTCATCGTCTACGACGAGC...GCCATCTTTACCAAGGTGCTCCTGGAAAACTGGGTGCCGTTCAGATTTTCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR GCA 90 bp | CTGCTCGACTGTGTGACCTCAACAGAAATATCTCCCAGAGTCACTAGACTCCTGCGACCAGCGACACCGTaGTGTCCTCCCGGAGACTCT | + |
Preference number: 4 (lower is better) Translates to: LLDCVTSTEISPRVTRLLRPATP*CPPGDS Trigger: AGAGTCTCCGGGAGGACAGCACGGTGTCGCTGGTCG...CAGGAGTCTAGTGACTCTGGGAGATATTTCTGTTGAGGTCACACAGTCGAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR TCA 90 bp | CTCGACTGTGTGACCTCAACAGAAATATCTCCCAGAGTCACTAGACTCCTGCACCATTCAGGAGGGCCGTaGTCCCCAGGGCATCCAACA | + |
Preference number: 4 (lower is better) Translates to: LDCVTSTEISPRVTRLLHHSGGP*SPGHPT Trigger: TGTTGGATGCCCTGGGGATCACGGCCCTCCTGAATG...GTGCAGGAGTCTAGTGACTCTGGGAGATATTTCTGTTGAGGTCACACAGTCGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR GCA 90 bp | GCAGGAAAATCTGAACGGCACCCAGTTTTCCAGGAGCACCTTGGTAAAGATGGCCATCCAACATGTCCCTaGGGGCAGCATGGTAGGCAC | + |
Preference number: 4 (lower is better) Translates to: AGKSERHPVFQEHLGKDGHPTCP*GQHGRH Trigger: GTGCCTACCATGCTGCCCGCAGGGACATGTTGGATG...GCCATCTTTACCAAGGTGCTCCTGGAAAACTGGGTGCCGTTCAGATTTTCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR GCA 90 bp | TGTTTGTTTTTAATGTGTATTCAAAGTCGTTATTGCCATCCTAGCTGGCCCTGTGCAGGCAGATGTCCGTaGGCTCCGCGTTCCGGCGCA | + |
Preference number: 4 (lower is better) Translates to: CLFLMCIQSRYCHPSWPCAGRCP*APRSGA Trigger: TGCGCCGGAACGCGGAGCGCACGGACATCTGCCTGC...ACAGGGCCAGCTAGGATGGCAATAACGACTTTGAATACACATTAAAAACAAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR GCA 90 bp | GGAGGGCGTTTCAGAGTATTCACCAGATTTTGTAACAAGAATTTCTTGGTATGTTTCCGGCGCAACGCCTaGACGACCAGCGACACCGTG | + |
Preference number: 4 (lower is better) Translates to: GGRFRVFTRFCNKNFLVCFRRNA*TTSDTV Trigger: CACGGTGTCGCTGGTCGTGCAGGCGTTGCGCCGGAA...ACATACCAAGAAATTCTTGTTACAAAATCTGGTGAATACTCTGAAACGCCCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR TCA 90 bp | TTTCCCTCTCCACTCAATAAAAATTGGTTGCGCACATTTGCCAGGATCTGTGGGGGTTCATCAGCCTTTTaGGCACGCTGCAGTCCATCT | + |
Preference number: 4 (lower is better) Translates to: FPSPLNKNWLRTFARICGGSSAF*ARCSPS Trigger: AGATGGACTGCAGCGTGCTCAAAAGGCTGATGAACC...CCCACAGATCCTGGCAAATGTGCGCAACCAATTTTTATTGAGTGGAGAGGGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR TCA 90 bp | TTTCCCTCTCCACTCAATAAAAATTGGTTGCGCACATTTGCCAGGATCTGTGGGGTGATTGGGACAGTCTaGAGAGACATTCAGGAGGGC | + |
Preference number: 4 (lower is better) Translates to: FPSPLNKNWLRTFARICGVIGTV*RDIQEG Trigger: GCCCTCCTGAATGTCTCTTCAGACTGTCCCAATCAC...CCCACAGATCCTGGCAAATGTGCGCAACCAATTTTTATTGAGTGGAGAGGGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | TCCCTATTTGCTGTTCACAGGTGGCTGGCAACTGGCTGGGGGCCGACTCTGGATTTTAGAGCAGAATTCTaGGTATTCAGAAGAAAACCT | + |
Preference number: 4 (lower is better) Translates to: SLFAVHRWLATGWGPTLDFRAEF*VFRRKP Trigger: AGGTTTTCTTCTGAATACCCAGAATTCTGCTCTAAA...ATCCAGAGTCGGCCCCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | TATGCGTATCTTTTTATTCAAAAGAGGGAGGGCGTTTCAGAGTATTCACCAGATGTACAGGGGGTGGGATaGCGGCCAGGGCCTTGGTTT | + |
Preference number: 4 (lower is better) Translates to: YAYLFIQKREGVSEYSPDVQGVG*RPGPWF Trigger: AAACCAAGGCCCTGGCCGCCATCCCACCCCCTGTAC...ATCTGGTGAATACTCTGAAACGCCCTCCCTCTTTTGAATAAAAAGATACGCATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | TGTTTGTTTTTAATGTGTATTCAAAGTCGTTATTGCCATCCTAGCTGGCCCTGTAGACGAACTGCGAGGTaGGGGTCGGGGTGGCCTTTC | + |
Preference number: 4 (lower is better) Translates to: CLFLMCIQSRYCHPSWPCRRTAR*GSGWPF Trigger: GAAAGGCCACCCCGACCCCCACCTCGCAGTTCGTCT...ACAGGGCCAGCTAGGATGGCAATAACGACTTTGAATACACATTAAAAACAAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR TCA 90 bp | CTGCTAAATCTGAAACACCCAATGTATCCGCGAGAGGGAGATTCATTTTTAGTTGACGTGGTGAGCACCTaGGACTCAAACTGCAGCAAC | + |
Preference number: 4 (lower is better) Translates to: LLNLKHPMYPREGDSFLVDVVST*DSNCSN Trigger: GTTGCTGCAGTTTGAGTCTCAGGTGCTCACCACGTC...AACTAAAAATGAATCTCCCTCTCGCGGATACATTGGGTGTTTCAGATTTAGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR TCA 90 bp | TATGCGTATCTTTTTATTCAAAAGAGGGAGGGCGTTTCAGAGTATTCACCAGATCAGACACAGGGAAGCTaGAGACGAACTGCGAGGTGG | + |
Preference number: 4 (lower is better) Translates to: YAYLFIQKREGVSEYSPDQTQGS*RRTARW Trigger: CCACCTCGCAGTTCGTCTTCAGCTTCCCTGTGTCTG...ATCTGGTGAATACTCTGAAACGCCCTCCCTCTTTTGAATAAAAAGATACGCATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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3UTR CAA 72 bp | TTCCCTCTCCACTCAATAAAAATTGGTTGCGCACATTaGCCAGGATCTGTGGGGTTTCATAACTTTCAAGCT | + |
Preference number: 4 (lower is better) Translates to: FPLHSIKIGCAH*PGSVGFHNFQA Trigger: AGCTTGAAAGTTATGAAACCCCACAGATCCTGGCAAATGTGCGCAACCAATTTTTATTGAGTGGAGAGGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CCA 90 bp | GCTAAATCTGAAACACCCAATGTATCCGCGAGAGGGAGATTCATTTTTAGTTCAGACCCTCAAAGTGATTaGGACAGTCTGAAGAGACAT | + |
Preference number: 4 (lower is better) Translates to: AKSETPNVSARGRFIFSSDPQSD*DSLKRH Trigger: ATGTCTCTTCAGACTGTCCCAATCACTTTGAGGGTC...TGAACTAAAAATGAATCTCCCTCTCGCGGATACATTGGGTGTTTCAGATTTAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 90 bp | TGCCGCCGCTCAGCAGCCCCAAGGCGCCGTGGCTGCCGCTGCCGTTaGCGCCCGCGCTGCCGCCGCCGCCGTTCTCATCCCGGTTCATCA | + |
Preference number: 5 (lower is better) Translates to: CRRSAAPRRRGCRCR*RPRCRRRRSHPGSS Trigger: TGATGAACCGGGATGAGAACGGCGGCGGCGGCAGCGCGGGCGGCAACGGCAGCGGCAGCCACGGCGCCTTGGGGCTGCTGAGCGGCGGCA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 90 bp | TGCGCTCCGCGTTCCGGCGCAACGCCTGCACGACCAGCGACACCGTaGTGTCCTCCCGGAGACTCTCGGCGCGCGGGCTGCGCTCGTCGT | + |
Preference number: 5 (lower is better) Translates to: CAPRSGATPARPATP*CPPGDSRRAGCARR Trigger: ACGACGAGCGCAGCCCGCGCGCCGAGAGTCTCCGGGAGGACAGCACGGTGTCGCTGGTCGTGCAGGCGTTGCGCCGGAACGCGGAGCGCA 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS TCA 90 bp | CCTCCCGGAGACTCTCGGCGCGCGGGCTGCGCTCGTCGTAGACGATaGCAGCCGAGTAGAGGCCAGAGCGCAGGCGGGCACGCACCTCTT | + |
Preference number: 5 (lower is better) Translates to: PPGDSRRAGCARRRR*QPSRGQSAGGHAPL Trigger: AAGAGGTGCGTGCCCGCCTGCGCTCTGGCCTCTACTCGGCTGTCATCGTCTACGACGAGCGCAGCCCGCGCGCCGAGAGTCTCCGGGAGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 90 bp | TTAAGCAGGCAGATGTCCGTGCGCTCCGCGTTCCGGCGCAACGCCTaGACGACCAGCGACACCGTGCTGTCCTCCCGGAGACTCTCGGCG | + |
Preference number: 5 (lower is better) Translates to: LSRQMSVRSAFRRNA*TTSDTVLSSRRLSA Trigger: CGCCGAGAGTCTCCGGGAGGACAGCACGGTGTCGCTGGTCGTGCAGGCGTTGCGCCGGAACGCGGAGCGCACGGACATCTGCCTGCTTAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS CCA 90 bp | GCAGCGGGGTTCCACAGGAGCTGCAGCCCAGGTCCAAGGACTCATTaGTGCTGGGAGGTACAGGGGGTGGGATGGCGGCCAGGGCCTTGG | + |
Preference number: 5 (lower is better) Translates to: AAGFHRSCSPGPRTH*CWEVQGVGWRPGPW Trigger: CCAAGGCCCTGGCCGCCATCCCACCCCCTGTACCTCCCAGCACCAATGAGTCCTTGGACCTGGGCTGCAGCTCCTGTGGAACCCCGCTGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 90 bp | GCGGGGTTCCACAGGAGCTGCAGCCCAGGTCCAAGGACTCATTGGTaGTGGGAGGTACAGGGGGTGGGATGGCGGCCAGGGCCTTGGTTT | + |
Preference number: 5 (lower is better) Translates to: AGFHRSCSPGPRTHW*WEVQGVGWRPGPWF Trigger: AAACCAAGGCCCTGGCCGCCATCCCACCCCCTGTACCTCCCAGCACCAATGAGTCCTTGGACCTGGGCTGCAGCTCCTGTGGAACCCCGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS TCA 90 bp | CCGCGCTGCCGCCGCCGCCGTTCTCATCCCGGTTCATCAGCCTTTTaGGCACGCTGCAGTCCATCTCCCGCAGTTCCTCCATCGTCACCA | + |
Preference number: 5 (lower is better) Translates to: PRCRRRRSHPGSSAF*ARCSPSPAVPPSSP Trigger: TGGTGACGATGGAGGAACTGCGGGAGATGGACTGCAGCGTGCTCAAAAGGCTGATGAACCGGGATGAGAACGGCGGCGGCGGCAGCGCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 90 bp | GTGGTGATGGGGCTGTGCAGGTACGGCAGGTTACTGGGGGCCGCGTaGACGCCCACAGACACAGGGAAGCTGAAGACGAACTGCGAGGTG | + |
Preference number: 5 (lower is better) Translates to: VVMGLCRYGRLLGAA*TPTDTGKLKTNCEV Trigger: CACCTCGCAGTTCGTCTTCAGCTTCCCTGTGTCTGTGGGCGTGCACGCGGCCCCCAGTAACCTGCCGTACCTGCACAGCCCCATCACCAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CAA 90 bp | TCCCTATTTGCTGTTCACAGGTGGCTGGCAACTGGCTGGGGGCCGACTCTGGATTCCAGCAGCAGGCACTaGCCGCCGCTCAGCAGCCCC | + |
Preference number: 5 (lower is better) Translates to: SLFAVHRWLATGWGPTLDSSSRH*PPLSSP Trigger: GGGGCTGCTGAGCGGCGGCAAGTGCCTGCTGCTGGA...ATCCAGAGTCGGCCCCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS CCA 90 bp | GCAGCCCAGGTCCAAGGACTCATTGGTGCTGGGAGGTACAGGGGGTaGGATGGCGGCCAGGGCCTTGGTTTTAGAGCAGAATTCTGGGTA | + |
Preference number: 5 (lower is better) Translates to: AAQVQGLIGAGRYRG*DGGQGLGFRAEFWV Trigger: TACCCAGAATTCTGCTCTAAAACCAAGGCCCTGGCCGCCATCCCACCCCCTGTACCTCCCAGCACCAATGAGTCCTTGGACCTGGGCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CAA 90 bp | GTCCCTATTTGCTGTTCACAGGTGGCTGGCAACTGGCTGGGGGCCGACTCTGGAAGGTCCAAGGACTCATaGGTGCTGGGAGGTACAGGG | + |
Preference number: 5 (lower is better) Translates to: VPICCSQVAGNWLGADSGRSKDS*VLGGTG Trigger: CCCTGTACCTCCCAGCACCAATGAGTCCTTGGACCT...TCCAGAGTCGGCCCCCAGCCAGTTGCCAGCCACCTGTGAACAGCAAATAGGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CAA 90 bp | CATGTCACCCTGCGTCTGATGGTAACCATGGTGACCACCTACCCGACGCTCCTCATGTCGGCCTTGTGGTaGTCTTCGACGGGGATGCAC | + |
Preference number: 5 (lower is better) Translates to: HVTLRLMVTMVTTYPTLLMSALW*SSTGMH Trigger: GTGCATCCCCGTCGAAGACAACCACAAGGCCGACAT...GAGGAGCGTCGGGTAGGTGGTCACCATGGTTACCATCAGACGCAGGGTGACATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS TCA 90 bp | CCTCAAAGTGATTGGGACAGTCTGAAGAGACATTCAGGAGGGCCGTaGTCCCCAGGGCATCCAACATGTCCCTGCGGGCAGCATGGTAGG | + |
Preference number: 5 (lower is better) Translates to: PQSDWDSLKRHSGGP*SPGHPTCPCGQHGR Trigger: CCTACCATGCTGCCCGCAGGGACATGTTGGATGCCCTGGGGATCACGGCCCTCCTGAATGTCTCTTCAGACTGTCCCAATCACTTTGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS-3UTR CAA 90 bp | CCCCAGCCAAACAGACCGCTGGAGAGAAAAATCTCACGTGGCTGGGTCAGTGGGCGGTTCATCAGCCTTTaGAGCACGCTGCAGTCCATC | + |
Preference number: 5 (lower is better) Translates to: PQPNRPLERKISRGWVSGRFISL*STLQSI Trigger: GATGGACTGCAGCGTGCTCAAAAGGCTGATGAACCG...CCCACTGACCCAGCCACGTGAGATTTTTCTCTCCAGCGGTCTGTTTGGCTGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 72 bp | CGTTCCGGCGCAACGCCTGCACGACCAGCGACACCGTaGTGTCCTCCCGGAGACTCTCGGCGCGCGGGCTGC | + |
Preference number: 6 (lower is better) Translates to: RSGATPARPATP*CPPGDSRRAGC Trigger: GCAGCCCGCGCGCCGAGAGTCTCCGGGAGGACAGCACGGTGTCGCTGGTCGTGCAGGCGTTGCGCCGGAACG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS TCA 72 bp | GACTCTCGGCGCGCGGGCTGCGCTCGTCGTAGACGATaGCAGCCGAGTAGAGGCCAGAGCGCAGGCGGGCAC | + |
Preference number: 6 (lower is better) Translates to: DSRRAGCARRRR*QPSRGQSAGGH Trigger: GTGCCCGCCTGCGCTCTGGCCTCTACTCGGCTGTCATCGTCTACGACGAGCGCAGCCCGCGCGCCGAGAGTC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 72 bp | CAGATGTCCGTGCGCTCCGCGTTCCGGCGCAACGCCTaGACGACCAGCGACACCGTGCTGTCCTCCCGGAGA | + |
Preference number: 6 (lower is better) Translates to: QMSVRSAFRRNA*TTSDTVLSSRR Trigger: TCTCCGGGAGGACAGCACGGTGTCGCTGGTCGTGCAGGCGTTGCGCCGGAACGCGGAGCGCACGGACATCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 72 bp | GGGCTGTGCAGGTACGGCAGGTTACTGGGGGCCGCGTaGACGCCCACAGACACAGGGAAGCTGAAGACGAAC | + |
Preference number: 6 (lower is better) Translates to: GLCRYGRLLGAA*TPTDTGKLKTN Trigger: GTTCGTCTTCAGCTTCCCTGTGTCTGTGGGCGTGCACGCGGCCCCCAGTAACCTGCCGTACCTGCACAGCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS TCA 72 bp | CGCCGCCGCCGTTCTCATCCCGGTTCATCAGCCTTTTaGGCACGCTGCAGTCCATCTCCCGCAGTTCCTCCA | + |
Preference number: 6 (lower is better) Translates to: RRRRSHPGSSAF*ARCSPSPAVPP Trigger: TGGAGGAACTGCGGGAGATGGACTGCAGCGTGCTCAAAAGGCTGATGAACCGGGATGAGAACGGCGGCGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS CCA 72 bp | GTCCAAGGACTCATTGGTGCTGGGAGGTACAGGGGGTaGGATGGCGGCCAGGGCCTTGGTTTTAGAGCAGAA | + |
Preference number: 6 (lower is better) Translates to: VQGLIGAGRYRG*DGGQGLGFRAE Trigger: TTCTGCTCTAAAACCAAGGCCCTGGCCGCCATCCCACCCCCTGTACCTCCCAGCACCAATGAGTCCTTGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |
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CDS GCA 72 bp | GCAGTGAACCAGCACTCGCCCTCGACAGTCCTTTACTaGGTCGATGTACTCGATGGCTTCCATGAACCAGGA | + |
Preference number: 6 (lower is better) Translates to: AVNQHSPSTVLY*VDVLDGFHEPG Trigger: TCCTGGTTCATGGAAGCCATCGAGTACATCGACGCAGTAAAGGACTGTCGAGGGCGAGTGCTGGTTCACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033930.5 |