RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DUSP28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047067

Ensembl transcript IDs: ENSMUST00000060913.8

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGGAGCCCAGGTTCTTTGTTTTCCACCCACTACTACTTTAAATCGTaGCTACATTTGCAGGGCTCTGATGGAAGCAGATGTCTAAGAGAG +
Preference number: 1 (lower is better)
Translates to: RSPGSLFSTHYYFKS*LHLQGSDGSRCLRE
Trigger: CTCTCTTAGACATCTGCTTCCATCAGAGCCCTGCAAATGTAGCCACGATTTAAAGTAGTAGTGGGTGGAAAACAAAGAACCTGGGCTCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR CCA 90 bp GCTTCCCAGACTATCCTTCACTCAATTTCTCTACCTAAAACGTGCTaGTTTGGATTTGGTCCAAACATGATGAATAAACGAAGTCCTCCT +
Preference number: 1 (lower is better)
Translates to: ASQTILHSISLPKTC*FGFGPNMMNKRSPP
Trigger: AGGAGGACTTCGTTTATTCATCATGTTTGGACCAAATCCAAACCAGCACGTTTTAGGTAGAGAAATTGAGTGAAGGATAGTCTGGGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR-3UTR GCA 90 bp CAGCTGCAGTCTGCACGGCCTCCCTTCCATGGCACAGCAGCTGTAAGCCAAAGGACACCCAAAGCCAGCTaGCTAATAGAAAAAGGAGGG +
Preference number: 2 (lower is better)
Translates to: QLQSARPPFHGTAAVSQRTPKAS*LIEKGG
Trigger: CCCTCCTTTTTCTATTAGGCAGCTGGCTTTGGGTGT...CCTTTGGCTTACAGCTGCTGTGCCATGGAAGGGAGGCCGTGCAGACTGCAGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR CAA 90 bp GGTTCTTTGTTTTCCACCCACTACTACTTTAAATCGTGGCTACATTaGCAGGGCTCTGATGGAAGCAGATGTCTAAGAGAGGCTGTGTCT +
Preference number: 2 (lower is better)
Translates to: GSLFSTHYYFKSWLH*QGSDGSRCLREAVS
Trigger: AGACACAGCCTCTCTTAGACATCTGCTTCCATCAGAGCCCTGCAAATGTAGCCACGATTTAAAGTAGTAGTGGGTGGAAAACAAAGAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR GCA 72 bp TGGGAGGTAGGCGGCCGCAGTCGCTCAGCTGCAGTCTaGACGGCCTCCCTTCCATGGCACAGCAGCTGTAAG +
Preference number: 3 (lower is better)
Translates to: WEVGGRSRSAAV*TASLPWHSSCK
Trigger: CTTACAGCTGCTGTGCCATGGAAGGGAGGCCGTGCAGACTGCAGCTGAGCGACTGCGGCCGCCTACCTCCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR-3UTR CAA 90 bp AGTCGCTCAGCTGCAGTCTGCACGGCCTCCCTTCCATGGCACAGCAGCTGTAAGTTTCAGTATAGACGCTaGGTCACCCAGCAGCCGAAC +
Preference number: 3 (lower is better)
Translates to: SRSAAVCTASLPWHSSCKFQYRR*VTQQPN
Trigger: GTTCGGCTGCTGGGTGACCAAGCGTCTATACTGAAA...CTTACAGCTGCTGTGCCATGGAAGGGAGGCCGTGCAGACTGCAGCTGAGCGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR CCA 72 bp CCTCCCTTCCATGGCACAGCAGCTGTAAGCCAAAGGTaGGCCCATGAGCTCCTGCTGGGAGACTCTATGTTC +
Preference number: 3 (lower is better)
Translates to: PPFHGTAAVSQR*AHELLLGDSMF
Trigger: GAACATAGAGTCTCCCAGCAGGAGCTCATGGGCCCACCTTTGGCTTACAGCTGCTGTGCCATGGAAGGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR TCA 72 bp TCTGAACTACAAGAGCAATCAACACAAGGTGGCAACTaGTGGGCCTGCCAACCAGCTGGGGAAGATAGCGCA +
Preference number: 3 (lower is better)
Translates to: SELQEQSTQGGN*WACQPAGEDSA
Trigger: TGCGCTATCTTCCCCAGCTGGTTGGCAGGCCCATCAGTTGCCACCTTGTGTTGATTGCTCTTGTAGTTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR GCA 72 bp TACTACCATCAAGATGGGGCAACACCCAAAGCCAGCTaGCTAATAGAAAAAGGAGGGAAGGGACACTTCCTT +
Preference number: 3 (lower is better)
Translates to: YYHQDGATPKAS*LIEKGGKGHFL
Trigger: AAGGAAGTGTCCCTTCCCTCCTTTTTCTATTAGGCAGCTGGCTTTGGGTGTTGCCCCATCTTGATGGTAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR CCA 72 bp TCCTACTCAGTAGACGTTCCTGTACTACCATCAAGATaGGGCAACACCCAAAGCCAGCTGCCTAATAGAAAA +
Preference number: 3 (lower is better)
Translates to: SYSVDVPVLPSR*GNTQSQLPNRK
Trigger: TTTTCTATTAGGCAGCTGGCTTTGGGTGTTGCCCCATCTTGATGGTAGTACAGGAACGTCTACTGAGTAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR-3UTR CAA 90 bp GATGGAAGCAGATGTCTAAGAGAGGCTGTGTCTGAACTACAAGAGCAATCAACAGGTCAGGCGTTGATGTaGATACAGGTTAAGAAACGA +
Preference number: 3 (lower is better)
Translates to: DGSRCLREAVSELQEQSTGQALM*IQVKKR
Trigger: TCGTTTCTTAACCTGTATCAACATCAACGCCTGACC...TGTTGATTGCTCTTGTAGTTCAGACACAGCCTCTCTTAGACATCTGCTTCCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR CCA 72 bp GGTTCTTTGTTTTCCACCCACTACTACTTTAAATCGTaGCTACATTTGCAGGGCTCTGATGGAAGCAGATGT +
Preference number: 3 (lower is better)
Translates to: GSLFSTHYYFKS*LHLQGSDGSRC
Trigger: ACATCTGCTTCCATCAGAGCCCTGCAAATGTAGCCACGATTTAAAGTAGTAGTGGGTGGAAAACAAAGAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR CCA 72 bp TTTATTCACTTATTTATTCACCGATTAAACAACCAGTaGACACACCTCTGTAATTTACACACGGAGCCCAGG +
Preference number: 3 (lower is better)
Translates to: FIHLFIHRLNNQ*THLCNLHTEPR
Trigger: CCTGGGCTCCGTGTGTAAATTACAGAGGTGTGTCCACTGGTTGTTTAATCGGTGAATAAATAAGTGAATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
3UTR CCA 72 bp ACTATCCTTCACTCAATTTCTCTACCTAAAACGTGCTaGTTTGGATTTGGTCCAAACATGATGAATAAACGA +
Preference number: 3 (lower is better)
Translates to: TILHSISLPKTC*FGFGPNMMNKR
Trigger: TCGTTTATTCATCATGTTTGGACCAAATCCAAACCAGCACGTTTTAGGTAGAGAAATTGAGTGAAGGATAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR GCA 90 bp GGCCGCAGTCGCTCAGCTGCAGTCTGCACGGCCTCCCTTCCATGGCACAGCAGCGCGCGCGGCCCGGGCTaGTGGCGGGAGACATTGACG +
Preference number: 4 (lower is better)
Translates to: GRSRSAAVCTASLPWHSSARGPG*WRETLT
Trigger: CGTCAATGTCTCCCGCCAGCAGCCCGGGCCGCGCGC...GCTGCTGTGCCATGGAAGGGAGGCCGTGCAGACTGCAGCTGAGCGACTGCGGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR CCA 90 bp GCGGCCGCAGTCGCTCAGCTGCAGTCTGCACGGCCTCCCTTCCATGGCACAGCACAGCAGGTCCTCAGCTaGGTCGTCGAACACGGGTAC +
Preference number: 4 (lower is better)
Translates to: AAAVAQLQSARPPFHGTAQQVLS*VVEHGY
Trigger: GTACCCGTGTTCGACGACCCAGCTGAGGACCTGCTG...TGCTGTGCCATGGAAGGGAGGCCGTGCAGACTGCAGCTGAGCGACTGCGGCCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR TCA 90 bp AGTCGCTCAGCTGCAGTCTGCACGGCCTCCCTTCCATGGCACAGCAGCTGTAAGGGTGCAGACGGCGGCTaGGCGACTGCGGCCGTTCTT +
Preference number: 4 (lower is better)
Translates to: SRSAAVCTASLPWHSSCKGADGG*ATAAVL
Trigger: AAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACC...CTTACAGCTGCTGTGCCATGGAAGGGAGGCCGTGCAGACTGCAGCTGAGCGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR CCA 90 bp GCCCATGAGCTCCTGCTGGGAGACTCTATGTTCATTTCTAAGGGACCAGAAGTTGCTCCCGGGGCAGGATaGCCTGGGCCTGAAGGGTCT +
Preference number: 4 (lower is better)
Translates to: AHELLLGDSMFISKGPEVAPGAG*PGPEGS
Trigger: AGACCCTTCAGGCCCAGGCCATCCTGCCCCGGGAGC...AACTTCTGGTCCCTTAGAAATGAACATAGAGTCTCCCAGCAGGAGCTCATGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR GCA 90 bp AAGTCCTCCTACTCAGTAGACGTTCCTGTACTACCATCAAGATGGGGCAACACCCGGCGGCTGAGCGACTaGGGCCGTTCTTGCAGTACA +
Preference number: 4 (lower is better)
Translates to: KSSYSVDVPVLPSRWGNTRRLSD*GRSCST
Trigger: TGTACTGCAAGAACGGCCGCAGTCGCTCAGCCGCCG...GGTGTTGCCCCATCTTGATGGTAGTACAGGAACGTCTACTGAGTAGGAGGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR CCA 90 bp GATGGAAGCAGATGTCTAAGAGAGGCTGTGTCTGAACTACAAGAGCAATCAACAGCGCGATCCAGGCTGTaGCCGCGGTGCCGCATTAGG +
Preference number: 4 (lower is better)
Translates to: DGSRCLREAVSELQEQSTARSRL*PRCRIR
Trigger: CCTAATGCGGCACCGCGGCCACAGCCTGGATCGCGC...TGTTGATTGCTCTTGTAGTTCAGACACAGCCTCTCTTAGACATCTGCTTCCATC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR GCA 90 bp AAGTCCTCCTACTCAGTAGACGTTCCTGTACTACCATCAAGATGGGGCAACACCGACTGCGGCCGTTCTTaGAGTACACGAGACAGGAGC +
Preference number: 4 (lower is better)
Translates to: KSSYSVDVPVLPSRWGNTDCGRS*STRDRS
Trigger: GCTCCTGTCTCGTGTACTGCAAGAACGGCCGCAGTC...GGTGTTGCCCCATCTTGATGGTAGTACAGGAACGTCTACTGAGTAGGAGGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR TCA 90 bp CTTCCCAGACTATCCTTCACTCAATTTCTCTACCTAAAACGTGCTGGTTTGGATAGGATGGCCTGGGCCTaGAGGGTCTGCTCGTACTTC +
Preference number: 4 (lower is better)
Translates to: LPRLSFTQFLYLKRAGLDRMAWA*RVCSYF
Trigger: GAAGTACGAGCAGACCCTTCAGGCCCAGGCCATCCT...ATCCAAACCAGCACGTTTTAGGTAGAGAAATTGAGTGAAGGATAGTCTGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS TCA 90 bp CGCGCACCAGCAGCTCCGTCGCACCCGCGGCTCGCGCATTCCCGATaGAGAGCGCGGGGGCGACGCGCGCGAAAGGCGGCGGTGCAGCCT +
Preference number: 5 (lower is better)
Translates to: RAPAAPSHPRLAHSR*RARGRRARKAAVQP
Trigger: AGGCTGCACCGCCGCCTTTCGCGCGCGTCGCCCCCGCGCTCTTCATCGGGAATGCGCGAGCCGCGGGTGCGACGGAGCTGCTGGTGCGCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 90 bp ACGGGTACGCGTAGTTCCGCCACTCCGGGCGCGCGCGGCCCGGGCTaGTGGCGGGAGACATTGACGCACAAAGTGATGCCCGCGCGCACC +
Preference number: 5 (lower is better)
Translates to: TGTRSSATPGARGPG*WRETLTHKVMPART
Trigger: GGTGCGCGCGGGCATCACTTTGTGCGTCAATGTCTCCCGCCAGCAGCCCGGGCCGCGCGCGCCCGGAGTGGCGGAACTACGCGTACCCGT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS CCA 90 bp GGTACGCGTAGTTCCGCCACTCCGGGCGCGCGCGGCCCGGGCTGCTaGCGGGAGACATTGACGCACAAAGTGATGCCCGCGCGCACCAGC +
Preference number: 5 (lower is better)
Translates to: GTRSSATPGARGPGC*RETLTHKVMPARTS
Trigger: GCTGGTGCGCGCGGGCATCACTTTGTGCGTCAATGTCTCCCGCCAGCAGCCCGGGCCGCGCGCGCCCGGAGTGGCGGAACTACGCGTACC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 90 bp CGCGGTGCCGCATTAGGTAGGCGGTGCAGACGGCGGCTGAGCGACTaGGGCCGTTCTTGCAGTACACGAGACAGGAGCCGCCGTCGCGCA +
Preference number: 5 (lower is better)
Translates to: RGAALGRRCRRRLSD*GRSCSTRDRSRRRA
Trigger: TGCGCGACGGCGGCTCCTGTCTCGTGTACTGCAAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACCGCCTACCTAATGCGGCACCGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS CCA 90 bp GACAGGAGCCGCCGTCGCGCACCGCGGCTTCCATGGCGGCACAGGTaGGCTCCAGGTGTGTCAGCAGGTCCTCAGCTGGGTCGTCGAACA +
Preference number: 5 (lower is better)
Translates to: DRSRRRAPRLPWRHR*APGVSAGPQLGRRT
Trigger: TGTTCGACGACCCAGCTGAGGACCTGCTGACACACCTGGAGCCCACCTGTGCCGCCATGGAAGCCGCGGTGCGCGACGGCGGCTCCTGTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 90 bp TTAGGTAGGCGGTGCAGACGGCGGCTGAGCGACTGCGGCCGTTCTTaGAGTACACGAGACAGGAGCCGCCGTCGCGCACCGCGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: LGRRCRRRLSDCGRS*STRDRSRRRAPRLP
Trigger: TGGAAGCCGCGGTGCGCGACGGCGGCTCCTGTCTCGTGTACTGCAAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACCGCCTACCTAA
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 90 bp AGGCGCGATCCAGGCTGTGGCCGCGGTGCCGCATTAGGTAGGCGGTaGAGACGGCGGCTGAGCGACTGCGGCCGTTCTTGCAGTACACGA +
Preference number: 5 (lower is better)
Translates to: RRDPGCGRGAALGRR*RRRLSDCGRSCSTR
Trigger: TCGTGTACTGCAAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACCGCCTACCTAATGCGGCACCGCGGCCACAGCCTGGATCGCGCCT
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS CCA 90 bp GAAGGGTCTGCTCGTACTTCTGCAGCTGAGCCCAGAACCCCAAATTaGGCTCGGCTACCGGGCGGGCGCTCTTCACCATCTGGAAGGCGC +
Preference number: 5 (lower is better)
Translates to: EGSARTSAAEPRTPN*ARLPGGRSSPSGRR
Trigger: GCGCCTTCCAGATGGTGAAGAGCGCCCGCCCGGTAGCCGAGCCCAATTTGGGGTTCTGGGCTCAGCTGCAGAAGTACGAGCAGACCCTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR CAA 90 bp CAGCTGCAGTCTGCACGGCCTCCCTTCCATGGCACAGCAGCTGTAAGCCAAAGGTGCTGGCGGGAGACATaGACGCACAAAGTGATGCCC +
Preference number: 5 (lower is better)
Translates to: QLQSARPPFHGTAAVSQRCWRET*THKVMP
Trigger: GGGCATCACTTTGTGCGTCAATGTCTCCCGCCAGCA...CCTTTGGCTTACAGCTGCTGTGCCATGGAAGGGAGGCCGTGCAGACTGCAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS-3UTR CAA 90 bp CAGACTATCCTTCACTCAATTTCTCTACCTAAAACGTGCTGGTTTGGATTTGGTCGACTGCGGCCGTTCTaGCAGTACACGAGACAGGAG +
Preference number: 5 (lower is better)
Translates to: QTILHSISLPKTCWFGFGRLRPF*QYTRQE
Trigger: CTCCTGTCTCGTGTACTGCAAGAACGGCCGCAGTCG...ACCAAATCCAAACCAGCACGTTTTAGGTAGAGAAATTGAGTGAAGGATAGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS TCA 72 bp GCAGCTCCGTCGCACCCGCGGCTCGCGCATTCCCGATaGAGAGCGCGGGGGCGACGCGCGCGAAAGGCGGCG +
Preference number: 6 (lower is better)
Translates to: AAPSHPRLAHSR*RARGRRARKAA
Trigger: CGCCGCCTTTCGCGCGCGTCGCCCCCGCGCTCTTCATCGGGAATGCGCGAGCCGCGGGTGCGACGGAGCTGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 72 bp CGTAGTTCCGCCACTCCGGGCGCGCGCGGCCCGGGCTaGTGGCGGGAGACATTGACGCACAAAGTGATGCCC +
Preference number: 6 (lower is better)
Translates to: RSSATPGARGPG*WRETLTHKVMP
Trigger: GGGCATCACTTTGTGCGTCAATGTCTCCCGCCAGCAGCCCGGGCCGCGCGCGCCCGGAGTGGCGGAACTACG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 72 bp CGGTGCAGACGGCGGCTGAGCGACTGCGGCCGTTCTTaGAGTACACGAGACAGGAGCCGCCGTCGCGCACCG +
Preference number: 6 (lower is better)
Translates to: RCRRRLSDCGRS*STRDRSRRRAP
Trigger: CGGTGCGCGACGGCGGCTCCTGTCTCGTGTACTGCAAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACCG
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 72 bp CCAGGCTGTGGCCGCGGTGCCGCATTAGGTAGGCGGTaGAGACGGCGGCTGAGCGACTGCGGCCGTTCTTGC +
Preference number: 6 (lower is better)
Translates to: PGCGRGAALGRR*RRRLSDCGRSC
Trigger: GCAAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACCGCCTACCTAATGCGGCACCGCGGCCACAGCCTGG
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS CCA 72 bp CGCCGTCGCGCACCGCGGCTTCCATGGCGGCACAGGTaGGCTCCAGGTGTGTCAGCAGGTCCTCAGCTGGGT +
Preference number: 6 (lower is better)
Translates to: RRRAPRLPWRHR*APGVSAGPQLG
Trigger: ACCCAGCTGAGGACCTGCTGACACACCTGGAGCCCACCTGTGCCGCCATGGAAGCCGCGGTGCGCGACGGCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS CAA 72 bp GCGGTGCAGACGGCGGCTGAGCGACTGCGGCCGTTCTaGCAGTACACGAGACAGGAGCCGCCGTCGCGCACC +
Preference number: 6 (lower is better)
Translates to: AVQTAAERLRPF*QYTRQEPPSRT
Trigger: GGTGCGCGACGGCGGCTCCTGTCTCGTGTACTGCAAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACCGC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS GCA 72 bp GCATTAGGTAGGCGGTGCAGACGGCGGCTGAGCGACTaGGGCCGTTCTTGCAGTACACGAGACAGGAGCCGC +
Preference number: 6 (lower is better)
Translates to: ALGRRCRRRLSD*GRSCSTRDRSR
Trigger: GCGGCTCCTGTCTCGTGTACTGCAAGAACGGCCGCAGTCGCTCAGCCGCCGTCTGCACCGCCTACCTAATGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8
CDS CCA 72 bp GCTCGTACTTCTGCAGCTGAGCCCAGAACCCCAAATTaGGCTCGGCTACCGGGCGGGCGCTCTTCACCATCT +
Preference number: 6 (lower is better)
Translates to: ARTSAAEPRTPN*ARLPGGRSSPS
Trigger: AGATGGTGAAGAGCGCCCGCCCGGTAGCCGAGCCCAATTTGGGGTTCTGGGCTCAGCTGCAGAAGTACGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060913.8