RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DUSP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027368

Ensembl transcript IDs: ENSMUST00000028846.7

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACACGTCACTTCCTGGCTCCCCTGGGAGCACAAGGCTTAAGCTTTaGGTCAAGGGCTGCACACCCCTAGACATGGTTTCTGCTTGTCAC +
Preference number: 1 (lower is better)
Translates to: HTSLPGSPGSTRLKL*VKGCTPLDMVSACH
Trigger: GTGACAAGCAGAAACCATGTCTAGGGGTGTGCAGCCCTTGACCCAAAGCTTAAGCCTTGTGCTCCCAGGGGAGCCAGGAAGTGACGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR GCA 90 bp TTTCTGCAAGTCGAAGGAGGGAGAGCAAATAAGGGCCAGCCCTTATaGCACCTCAGAAGAGCACCATATCAGAGCAGCCGTCATCCTGGA +
Preference number: 1 (lower is better)
Translates to: FLQVEGGRANKGQPL*HLRRAPYQSSRHPG
Trigger: TCCAGGATGACGGCTGCTCTGATATGGTGCTCTTCTGAGGTGGCATAAGGGCTGGCCCTTATTTGCTCTCCCTCCTTCGACTTGCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR CCA 90 bp GCTGTTTCCAACGCCCCTCCCTGGCCCACAGGGCCGGGAGGAAGTTaGGGAGAGAGCGTTAAATGTCAGTTGAACACAAATAACTTTTCA +
Preference number: 1 (lower is better)
Translates to: AVSNAPPWPTGPGGS*GESVKCQLNTNNFS
Trigger: TGAAAAGTTATTTGTGTTCAACTGACATTTAACGCTCTCTCCCCAACTTCCTCCCGGCCCTGTGGGCCAGGGAGGGGCGTTGGAAACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR GCA 90 bp ACTGTTTTTATTGACACAACCTCAATGTTCTATATAAATATAAAGTaGTGTTTCCAACGCCCCTCCCTGGCCCACAGGGCCGGGAGGAAG +
Preference number: 1 (lower is better)
Translates to: TVFIDTTSMFYINIK*CFQRPSLAHRAGRK
Trigger: CTTCCTCCCGGCCCTGTGGGCCAGGGAGGGGCGTTGGAAACAGCACTTTATATTTATATAGAACATTGAGGTTGTGTCAATAAAAACAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR-3UTR TCA 90 bp TGCCACCTCAGAAGAGCACCATATCAGAGCAGCCGTCATCCTGGATTTCCTAGCAGTGGGACGGCAAGATaGGGAGGGAGGAGCTGGGCC +
Preference number: 2 (lower is better)
Translates to: CHLRRAPYQSSRHPGFPSSGTAR*GGRSWA
Trigger: GGCCCAGCTCCTCCCTCCTCATCTTGCCGTCCCACT...GCTAGGAAATCCAGGATGACGGCTGCTCTGATATGGTGCTCTTCTGAGGTGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR-3UTR CCA 90 bp CTTAAGCTTTGGGTCAAGGGCTGCACACCCCTAGACATGGTTTCTGCTTGTCACTGTTTTCTGAGCCCTTaGGTGACCAAGGGCTTTAAT +
Preference number: 2 (lower is better)
Translates to: LKLWVKGCTPLDMVSACHCFLSP*VTKGFN
Trigger: ATTAAAGCCCTTGGTCACCCAAGGGCTCAGAAAACA...GTGACAAGCAGAAACCATGTCTAGGGGTGTGCAGCCCTTGACCCAAAGCTTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR CCA 72 bp CTTCCTGGCTCCCCTGGGAGCACAAGGCTTAAGCTTTaGGTCAAGGGCTGCACACCCCTAGACATGGTTTCT +
Preference number: 3 (lower is better)
Translates to: LPGSPGSTRLKL*VKGCTPLDMVS
Trigger: AGAAACCATGTCTAGGGGTGTGCAGCCCTTGACCCAAAGCTTAAGCCTTGTGCTCCCAGGGGAGCCAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR CCA 72 bp AACGCCCCTCCCTGGCCCACAGGGCCGGGAGGAAGTTaGGGAGAGAGCGTTAAATGTCAGTTGAACACAAAT +
Preference number: 3 (lower is better)
Translates to: NAPPWPTGPGGS*GESVKCQLNTN
Trigger: ATTTGTGTTCAACTGACATTTAACGCTCTCTCCCCAACTTCCTCCCGGCCCTGTGGGCCAGGGAGGGGCGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR GCA 72 bp GTCGAAGGAGGGAGAGCAAATAAGGGCCAGCCCTTATaGCACCTCAGAAGAGCACCATATCAGAGCAGCCGT +
Preference number: 3 (lower is better)
Translates to: VEGGRANKGQPL*HLRRAPYQSSR
Trigger: ACGGCTGCTCTGATATGGTGCTCTTCTGAGGTGGCATAAGGGCTGGCCCTTATTTGCTCTCCCTCCTTCGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR TCA 72 bp CACACACACACACACAAAAGTCAGATGTCCGTAACATaGCACACACGTCACTTCCTGGCTCCCCTGGGAGCA +
Preference number: 3 (lower is better)
Translates to: HTHTHKSQMSVT*HTRHFLAPLGA
Trigger: TGCTCCCAGGGGAGCCAGGAAGTGACGTGTGTGTCATGTTACGGACATCTGACTTTTGTGTGTGTGTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
3UTR GCA 72 bp AACACAAATAACTTTTCAGCACCAATTACAGCGAGATaGCCACACACACACACACAAAAGTCAGATGTCCGT +
Preference number: 3 (lower is better)
Translates to: NTNNFSAPITAR*PHTHTQKSDVR
Trigger: ACGGACATCTGACTTTTGTGTGTGTGTGTGTGGGCATCTCGCTGTAATTGGTGCTGAAAAGTTATTTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp CCACAGCAGCTTCCCCCAGGAGTCAGTCAAAGCCAGAGCTGTGGGTGGGGCCAGAGTCGAGCAGCAGCGTaGGCTCGGCCTCCCGCGGCT +
Preference number: 4 (lower is better)
Translates to: PQQLPPGVSQSQSCGWGQSRAAA*ARPPAA
Trigger: AGCCGCGGGAGGCCGAGCGCACGCTGCTGCTCGACT...CTGGCCCCACCCACAGCTCTGGCTTTGACTGACTCCTGGGGGAAGCTGCTGTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR TCA 90 bp CCACAGCAGCTTCCCCCAGGAGTCAGTCAAAGCCAGAGCTGTGGGTGGGGCCAGCAGGCCTGCAGGCCCTaGAGATCTGAGGAGTGGTTG +
Preference number: 4 (lower is better)
Translates to: PQQLPPGVSQSQSCGWGQQACRP*RSEEWL
Trigger: CAACCACTCCTCAGATCTTCAGGGCCTGCAGGCCTG...CTGGCCCCACCCACAGCTCTGGCTTTGACTGACTCCTGGGGGAAGCTGCTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp GCCACAGCAGCTTCCCCCAGGAGTCAGTCAAAGCCAGAGCTGTGGGTGGGGCCAAGGAGTGGTTGCAGCTaGCCAAGTACAGGTAGGGCA +
Preference number: 4 (lower is better)
Translates to: ATAASPRSQSKPELWVGPRSGCS*PSTGRA
Trigger: TGCCCTACCTGTACTTGGGCAGCTGCAACCACTCCT...TGGCCCCACCCACAGCTCTGGCTTTGACTGACTCCTGGGGGAAGCTGCTGTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR TCA 90 bp ATAAAGTGCTGTTTCCAACGCCCCTCCCTGGCCCACAGGGCCGGGAGGAAGTTGACGTCTGGAAGCTTTTaGAACCGCCTCGCAAGAAGC +
Preference number: 4 (lower is better)
Translates to: IKCCFQRPSLAHRAGRKLTSGSF*NRLARS
Trigger: GCTTCTTGCGAGGCGGTTTCAAAAGCTTCCAGACGT...CAACTTCCTCCCGGCCCTGTGGGCCAGGGAGGGGCGTTGGAAACAGCACTTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp CTTAAGCTTTGGGTCAAGGGCTGCACACCCCTAGACATGGTTTCTGCTTGTCACATGCCAGCTTGGCAGTaGACCAGCACCCGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: LKLWVKGCTPLDMVSACHMPAWQ*TSTRPP
Trigger: TGGGGGCCGGGTGCTGGTGCACTGCCAAGCTGGCAT...GTGACAAGCAGAAACCATGTCTAGGGGTGTGCAGCCCTTGACCCAAAGCTTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp GCCACAGCAGCTTCCCCCAGGAGTCAGTCAAAGCCAGAGCTGTGGGTGGGGCCAATGACTCCCCGACGTTaGTTAACAAAGTCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: ATAASPRSQSKPELWVGPMTPRR*LTKSKA
Trigger: GGCCTTTGACTTTGTTAAGCAACGTCGGGGAGTCAT...TGGCCCCACCCACAGCTCTGGCTTTGACTGACTCCTGGGGGAAGCTGCTGTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp GCACCATATCAGAGCAGCCGTCATCCTGGATTTCCTAGCACCCCAGTGGGACGGAGAGACATTGAGAACTaGTGTGATGCCGCAGGCCTG +
Preference number: 4 (lower is better)
Translates to: APYQSSRHPGFPSTPVGRRDIEN*CDAAGL
Trigger: CAGGCCTGCGGCATCACAGCAGTTCTCAATGTCTCT...CCGTCCCACTGGGGTGCTAGGAAATCCAGGATGACGGCTGCTCTGATATGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp AGGCTTAAGCTTTGGGTCAAGGGCTGCACACCCCTAGACATGGTTTCTGCTTGTTGGCTGAGCGAGAGATaGCAGCTTGGCAGTGCACCA +
Preference number: 4 (lower is better)
Translates to: RLKLWVKGCTPLDMVSACWLSER*QLGSAP
Trigger: TGGTGCACTGCCAAGCTGGCATCTCTCGCTCAGCCA...ACAAGCAGAAACCATGTCTAGGGGTGTGCAGCCCTTGACCCAAAGCTTAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp AAGTCAGATGTCCGTAACATGACACACACGTCACTTCCTGGCTCCCCTGGGAGCTCCAGCTGTAGCAGCTaGCCCATGAAACTGAAGTTG +
Preference number: 4 (lower is better)
Translates to: KSDVRNMTHTSLPGSPGSSSCSS*PMKLKL
Trigger: CAACTTCAGTTTCATGGGGCAGCTGCTACAGCTGGA...GCTCCCAGGGGAGCCAGGAAGTGACGTGTGTGTCATGTTACGGACATCTGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CCA 90 bp TATATAAATATAAAGTGCTGTTTCCAACGCCCCTCCCTGGCCCACAGGGCCGGGAAAAGACCCTCAAAGTaGTTGGGGCAGCTGGCAGAG +
Preference number: 4 (lower is better)
Translates to: YINIKCCFQRPSLAHRAGKRPSK*LGQLAE
Trigger: CTCTGCCAGCTGCCCCAACCACTTTGAGGGTCTTTT...CCCGGCCCTGTGGGCCAGGGAGGGGCGTTGGAAACAGCACTTTATATTTATATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CCA 90 bp TCAGAAGAGCACCATATCAGAGCAGCCGTCATCCTGGATTTCCTAGCACCCCAGTCCGGACAGTACGTCTaGAAGCTTTTGAAACCGCCT +
Preference number: 4 (lower is better)
Translates to: SEEHHIRAAVILDFLAPQSGQYV*KLLKPP
Trigger: AGGCGGTTTCAAAAGCTTCCAGACGTACTGTCCGGA...CTGGGGTGCTAGGAAATCCAGGATGACGGCTGCTCTGATATGGTGCTCTTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CCA 90 bp ACCTCAGAAGAGCACCATATCAGAGCAGCCGTCATCCTGGATTTCCTAGCACCCAAGCTGATAGCCTCCTaGAACCAGGCACTTATCTCC +
Preference number: 4 (lower is better)
Translates to: TSEEHHIRAAVILDFLAPKLIAS*NQALIS
Trigger: GGAGATAAGTGCCTGGTTCCAGGAGGCTATCAGCTT...GGGTGCTAGGAAATCCAGGATGACGGCTGCTCTGATATGGTGCTCTTCTGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CCA 90 bp GCACCATATCAGAGCAGCCGTCATCCTGGATTTCCTAGCACCCCAGTGGGACGGCTTATCTCCACCATCTaGTTATCTTCTACTGGAATG +
Preference number: 4 (lower is better)
Translates to: APYQSSRHPGFPSTPVGRLISTI*LSSTGM
Trigger: CATTCCAGTAGAAGATAACCAGATGGTGGAGATAAG...CCGTCCCACTGGGGTGCTAGGAAATCCAGGATGACGGCTGCTCTGATATGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR TCA 90 bp AACACAAATAACTTTTCAGCACCAATTACAGCGAGATGCCCACACACACACACACAGGCAGATGGTGGCTaGGCGAGAGATGCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: NTNNFSAPITARCPHTHTQADGG*ARDASL
Trigger: CAAGCTGGCATCTCTCGCTCAGCCACCATCTGCCTG...TGTGTGTGTGTGTGGGCATCTCGCTGTAATTGGTGCTGAAAAGTTATTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR GCA 90 bp CTATATAAATATAAAGTGCTGTTTCCAACGCCCCTCCCTGGCCCACAGGGCCGGTATCTTCTACTGGAATaGTCTTGTAATGGAAAAGAC +
Preference number: 4 (lower is better)
Translates to: LYKYKVLFPTPLPGPQGRYLLLE*SCNGKD
Trigger: GTCTTTTCCATTACAAGAGCATTCCAGTAGAAGATA...CCGGCCCTGTGGGCCAGGGAGGGGCGTTGGAAACAGCACTTTATATTTATATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS TCA 90 bp CAGGAGCTTCAGAGCACAGATCCGGACAGTACGTCTGGAAGCTTTTaGAACCGCCTCGCAAGAAGCACACGGTCGTGGGTCCCCCGCGCA +
Preference number: 5 (lower is better)
Translates to: QELQSTDPDSTSGSF*NRLARSTRSWVPRA
Trigger: TGCGCGGGGGACCCACGACCGTGTGCTTCTTGCGAGGCGGTTTCAAAAGCTTCCAGACGTACTGTCCGGATCTGTGCTCTGAAGCTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS CCA 90 bp AGGGCCTGGGCAGGAGCTTCAGAGCACAGATCCGGACAGTACGTCTaGAAGCTTTTGAAACCGCCTCGCAAGAAGCACACGGTCGTGGGT +
Preference number: 5 (lower is better)
Translates to: RAWAGASEHRSGQYV*KLLKPPRKKHTVVG
Trigger: ACCCACGACCGTGTGCTTCTTGCGAGGCGGTTTCAAAAGCTTCCAGACGTACTGTCCGGATCTGTGCTCTGAAGCTCCTGCCCAGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CAA 90 bp GCACCATATCAGAGCAGCCGTCATCCTGGATTTCCTAGCACCCCAGTGGGACGGAGACCCTCAAAGTGGTaGGGGCAGCTGGCAGAGACA +
Preference number: 5 (lower is better)
Translates to: APYQSSRHPGFPSTPVGRRPSKW*GQLAET
Trigger: TGTCTCTGCCAGCTGCCCCAACCACTTTGAGGGTCT...CCGTCCCACTGGGGTGCTAGGAAATCCAGGATGACGGCTGCTCTGATATGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS TCA 90 bp ATTGAGAACTGCTGTGATGCCGCAGGCCTGCAGGCCCTGAAGATCTaGGGAGTGGTTGCAGCTGCCCAAGTACAGGTAGGGCAAGATTTC +
Preference number: 5 (lower is better)
Translates to: IENCCDAAGLQALKI*GVVAAAQVQVGQDF
Trigger: GAAATCTTGCCCTACCTGTACTTGGGCAGCTGCAACCACTCCTCAGATCTTCAGGGCCTGCAGGCCTGCGGCATCACAGCAGTTCTCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CAA 90 bp GCACCATATCAGAGCAGCCGTCATCCTGGATTTCCTAGCACCCCAGTGGGACGGGATGACTCCCCGACGTaGCTTAACAAAGTCAAAGGC +
Preference number: 5 (lower is better)
Translates to: APYQSSRHPGFPSTPVGRDDSPT*LNKVKG
Trigger: GCCTTTGACTTTGTTAAGCAACGTCGGGGAGTCATC...CCGTCCCACTGGGGTGCTAGGAAATCCAGGATGACGGCTGCTCTGATATGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CAA 90 bp CTTAAGCTTTGGGTCAAGGGCTGCACACCCCTAGACATGGTTTCTGCTTGTCACCCCATGAAACTGAAGTaGGGGGAGATGACTCCCCGA +
Preference number: 5 (lower is better)
Translates to: LKLWVKGCTPLDMVSACHPMKLK*GEMTPR
Trigger: TCGGGGAGTCATCTCCCCCAACTTCAGTTTCATGGG...GTGACAAGCAGAAACCATGTCTAGGGGTGTGCAGCCCTTGACCCAAAGCTTAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS CCA 90 bp CGGCCCCCACTATTCTTCACCGAGTCTATGAAGCTGATAGCCTCCTaGAACCAGGCACTTATCTCCACCATCTGGTTATCTTCTACTGGA +
Preference number: 5 (lower is better)
Translates to: RPPLFFTESMKLIAS*NQALISTIWLSSTG
Trigger: TCCAGTAGAAGATAACCAGATGGTGGAGATAAGTGCCTGGTTCCAGGAGGCTATCAGCTTCATAGACTCGGTGAAGAATAGTGGGGGCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS-3UTR CAA 90 bp ATTAATTTCTGCAAGTCGAAGGAGGGAGAGCAAATAAGGGCCAGCCCTTATGCCCAGCTGGCAGAGACATaGAGAACTGCTGTGATGCCG +
Preference number: 5 (lower is better)
Translates to: INFCKSKEGEQIRASPYAQLAET*RTAVMP
Trigger: CGGCATCACAGCAGTTCTCAATGTCTCTGCCAGCTG...GGCATAAGGGCTGGCCCTTATTTGCTCTCCCTCCTTCGACTTGCAGAAATTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS CCA 72 bp AGCGCGTTCCAGGGCACCGGTCGCGCGGCGCGCACGTaGCTCCGGCAGAAGGCCAGGAACGGGCGGCAGTCG +
Preference number: 6 (lower is better)
Translates to: SAFQGTGRAART*LRQKARNGRQS
Trigger: CGACTGCCGCCCGTTCCTGGCCTTCTGCCGGAGCCACGTGCGCGCCGCGCGACCGGTGCCCTGGAACGCGCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS GCA 72 bp CGGGGCCGTCCGGCGGGAGCTCGGCCACAGACGCGCTaGTTTCATCCAGCACCACGGCACGGGCCAGCTCCC +
Preference number: 6 (lower is better)
Translates to: RGRPAGARPQTR*FHPAPRHGPAP
Trigger: GGGAGCTGGCCCGTGCCGTGGTGCTGGATGAAAGCAGCGCGTCTGTGGCCGAGCTCCCGCCGGACGGCCCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS TCA 72 bp CCGCGCATCTCGTGCTGCAGTGCGGCTAGCAGCAGGTaGGCGGGGCCGTCCGGCGGGAGCTCGGCCACAGAC +
Preference number: 6 (lower is better)
Translates to: PRISCCSAASSR*AGPSGGSSATD
Trigger: GTCTGTGGCCGAGCTCCCGCCGGACGGCCCCGCTCACCTGCTGCTAGCCGCACTGCAGCACGAGATGCGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS GCA 72 bp CACCCTGGTCATAGATCGGAACCCTCGGGTCAGAGTTaGTATTTTCGGCCCCAGCAGGAGGCAGGGCCTGGG +
Preference number: 6 (lower is better)
Translates to: HPGHRSEPSGQS*YFRPQQEAGPG
Trigger: CCCAGGCCCTGCCTCCTGCTGGGGCCGAAAATAGCAACTCTGACCCGAGGGTTCCGATCTATGACCAGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS CAA 90 bp GCAGGAGCTTCAGAGCACAGATCCGGACAGTACGTCTGGAAGCTTTaGAAACCGCCTCGCAAGAAGCACACGGTCGTGGGTCCCCCGCGC +
Preference number: 6 (lower is better)
Translates to: AGASEHRSGQYVWKL*KPPRKKHTVVGPPR
Trigger: GCGCGGGGGACCCACGACCGTGTGCTTCTTGCGAGGCGGTTTCAAAAGCTTCCAGACGTACTGTCCGGATCTGTGCTCTGAAGCTCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS TCA 72 bp TGCTGTGATGCCGCAGGCCTGCAGGCCCTGAAGATCTaGGGAGTGGTTGCAGCTGCCCAAGTACAGGTAGGG +
Preference number: 6 (lower is better)
Translates to: CCDAAGLQALKI*GVVAAAQVQVG
Trigger: CCCTACCTGTACTTGGGCAGCTGCAACCACTCCTCAGATCTTCAGGGCCTGCAGGCCTGCGGCATCACAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS TCA 72 bp TTGAGAACTGCTGTGATGCCGCAGGCCTGCAGGCCCTaGAGATCTGAGGAGTGGTTGCAGCTGCCCAAGTAC +
Preference number: 6 (lower is better)
Translates to: LRTAVMPQACRP*RSEEWLQLPKY
Trigger: GTACTTGGGCAGCTGCAACCACTCCTCAGATCTTCAGGGCCTGCAGGCCTGCGGCATCACAGCAGTTCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS GCA 72 bp AAAGTGGTTGGGGCAGCTGGCAGAGACATTGAGAACTaGTGTGATGCCGCAGGCCTGCAGGCCCTGAAGATC +
Preference number: 6 (lower is better)
Translates to: KVVGAAGRDIEN*CDAAGLQALKI
Trigger: GATCTTCAGGGCCTGCAGGCCTGCGGCATCACAGCAGTTCTCAATGTCTCTGCCAGCTGCCCCAACCACTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS TCA 72 bp CAGAGCACAGATCCGGACAGTACGTCTGGAAGCTTTTaGAACCGCCTCGCAAGAAGCACACGGTCGTGGGTC +
Preference number: 6 (lower is better)
Translates to: QSTDPDSTSGSF*NRLARSTRSWV
Trigger: GACCCACGACCGTGTGCTTCTTGCGAGGCGGTTTCAAAAGCTTCCAGACGTACTGTCCGGATCTGTGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS GCA 72 bp CCTGCAGGCCCTGAAGATCTGAGGAGTGGTTGCAGCTaGCCAAGTACAGGTAGGGCAAGATTTCCACAGGAC +
Preference number: 6 (lower is better)
Translates to: PAGPEDLRSGCS*PSTGRARFPQD
Trigger: GTCCTGTGGAAATCTTGCCCTACCTGTACTTGGGCAGCTGCAACCACTCCTCAGATCTTCAGGGCCTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS CCA 72 bp GCAGGAGCTTCAGAGCACAGATCCGGACAGTACGTCTaGAAGCTTTTGAAACCGCCTCGCAAGAAGCACACG +
Preference number: 6 (lower is better)
Translates to: AGASEHRSGQYV*KLLKPPRKKHT
Trigger: CGTGTGCTTCTTGCGAGGCGGTTTCAAAAGCTTCCAGACGTACTGTCCGGATCTGTGCTCTGAAGCTCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS CAA 72 bp TCAGAGCACAGATCCGGACAGTACGTCTGGAAGCTTTaGAAACCGCCTCGCAAGAAGCACACGGTCGTGGGT +
Preference number: 6 (lower is better)
Translates to: SEHRSGQYVWKL*KPPRKKHTVVG
Trigger: ACCCACGACCGTGTGCTTCTTGCGAGGCGGTTTCAAAAGCTTCCAGACGTACTGTCCGGATCTGTGCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7
CDS CCA 72 bp CTATTCTTCACCGAGTCTATGAAGCTGATAGCCTCCTaGAACCAGGCACTTATCTCCACCATCTGGTTATCT +
Preference number: 6 (lower is better)
Translates to: LFFTESMKLIAS*NQALISTIWLS
Trigger: AGATAACCAGATGGTGGAGATAAGTGCCTGGTTCCAGGAGGCTATCAGCTTCATAGACTCGGTGAAGAATAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028846.7