RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DUS1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025155

Ensembl transcript IDs: ENSMUST00000026151.11, ENSMUST00000106133.8, ENSMUST00000106135.8, ENSMUST00000129955.2, ENSMUST00000143139.8, ENSMUST00000167023.8

Found 260 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCTTCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTaGGAACGGGGCAAGTCCAACCAAGCTGCCCTTGGTGCAACATTG +
Preference number: 1 (lower is better)
Translates to: CFSEMVYCSVLETQV*ERGKSNQAALGATL
Trigger: CAATGTTGCACCAAGGGCAGCTTGGTTGGACTTGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106135.8
3UTR-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTTGGCTGCCCTGGGGTaGGGATGGCTCTTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: QTPPADINRFFCVKEEIPLAALG*GWLLLA
Trigger: AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAA...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR-3UTR CCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTTGGCTGCCCTGGGGTaGGGATGGCTCTTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLLAALG*GWLLLA
Trigger: AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAA...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR-3UTR GCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGCCAGGCTTCATTGGCTaGCCTGGGGTGGGGATGGCT +
Preference number: 2 (lower is better)
Translates to: QHCQTPPADINRFFCVKEPGFIG*PGVGMA
Trigger: AGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGG...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCTTCATTGGCTGCCCTaGGGTGGGGATGGCTCTTGC +
Preference number: 2 (lower is better)
Translates to: QTPPADINRFFCVKEEIPLHWLP*GGDGSC
Trigger: GCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR-3UTR GCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACCAGGCTTCATTGGCTaGCCTGGGGTGGGGATGGCT +
Preference number: 2 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLPGFIG*PGVGMA
Trigger: AGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR-3UTR GCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCACCCTTGGTGCAACATTaGCAGACCCCACCTGCAGAC +
Preference number: 2 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGAPLVQH*QTPPAD
Trigger: GTCTGCAGGTGGGGTCTGGCAATGTTGCACCAAGGG...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR GCA 72 bp GTGGGAACGGGGCAAGTCCAACCAAGCTGCCCTTGGTaGAACATTGCCAGACCCCACCTGCAGACATCAACA +
Preference number: 3 (lower is better)
Translates to: VGTGQVQPSCPW*NIARPHLQTST
Trigger: TGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTGCACCAAGGGCAGCTTGGTTGGACTTGCCCCGTTCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR GCA 72 bp GGGGCAAGTCCAACCAAGCTGCCCTTGGTGCAACATTaGCAGACCCCACCTGCAGACATCAACAGGTTCTTC +
Preference number: 3 (lower is better)
Translates to: GASPTKLPLVQH*QTPPADINRFF
Trigger: GAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTGCACCAAGGGCAGCTTGGTTGGACTTGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR-3UTR CAA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGAGTGTCCAGGCTTCATaGGCTGCCCTGGGGTGGGGA +
Preference number: 3 (lower is better)
Translates to: QHCQTPPADINRFFCVKESVQAS*AALGWG
Trigger: TCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACT...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
3UTR-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTAAGTGTCCAGGCTTCATaGGCTGCCCTGGGGTGGGGA +
Preference number: 3 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLSVQAS*AALGWG
Trigger: TCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACT...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTTCCCCTCTGCACTCATaGCTCCCTGCACGCCGGTGT +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLASPLHS*LPARRC
Trigger: ACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGA...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTCGAAGCTTTAGCGCCTaGCTCACAGCAGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLARSFSA*LTAATP
Trigger: GGGCGTGGCTGCTGTGAGCCAGGCGCTAAAGCTTCG...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGTCCCCTCTGCACTCATaGCTCCCTGCACGCCGGTGT +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWSPLHS*LPARRC
Trigger: ACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGA...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTGTCACAGGCCTCACCTaGTGGGCTTCCTGCAGTCCA +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLAVTGLT*WASCSP
Trigger: TGGACTGCAGGAAGCCCAGCAGGTGAGGCCTGTGAC...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTGCCCCTTCTGCTCCTTaGTGCGCCCATGCACAGTCA +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLAAPSAP*CAHAQS
Trigger: TGACTGTGCATGGGCGCACCAAGGAGCAGAAGGGGC...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTAGGCTGTTCCTGCCATaGGCCCCTTCTGCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLARLFLP*APSAPW
Trigger: CCAAGGAGCAGAAGGGGCCCATGGCAGGAACAGCCT...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCGAAGCTTTAGCGCCTaGCTCACAGCAGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWRSFSA*LTAATP
Trigger: GGGCGTGGCTGCTGTGAGCCAGGCGCTAAAGCTTCG...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTCCTTCTGCTCCTTGGTaGGCCCATGCACAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLAPSAPW*AHAQSA
Trigger: TGCTGACTGTGCATGGGCGCACCAAGGAGCAGAAGG...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCCAGGAGGCTGTTCCTaGCATGGGCCCCTTCTGCTC +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWPGGCS*HGPLLL
Trigger: GAGCAGAAGGGGCCCATGGCAGGAACAGCCTCCTGG...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCCAGGAGGCTGTTCCTaGCATGGGCCCCTTCTGCTC +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLPGGCS*HGPLLL
Trigger: GAGCAGAAGGGGCCCATGGCAGGAACAGCCTCCTGG...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTAAGAGGGCAGGGTTGTaGAGGTTCCCCTCTGCACTC +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLAKRAGL*RFPSAL
Trigger: GAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTT...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCACTCTGGTCCACCATaGGTGCCACCACATGTCGGG +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWHSGPP*VPPHVG
Trigger: CCCGACATGTGGTGGCACCCATGGTGGACCAGAGTG...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGGCCCCTTCTGCTCCTTaGTGCGCCCATGCACAGTCA +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWAPSAP*CAHAQS
Trigger: TGACTGTGCATGGGCGCACCAAGGAGCAGAAGGGGC...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCGAAGCTTTAGCGCCTaGCTCACAGCAGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLRSFSA*LTAATP
Trigger: GGGCGTGGCTGCTGTGAGCCAGGCGCTAAAGCTTCG...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCACAGAACTGCACAATaGGAGGCCTGTCCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLHRTAQ*EACPRG
Trigger: GCCCCGAGGACAGGCCTCTCATTGTGCAGTTCTGTG...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGTGCACAGTCAGCAGCTaGCAGCCAGCCTTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWCTVSS*QPAFSS
Trigger: GCTGGAGAAGGCTGGCTGTCAGCTGCTGACTGTGCA...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTTGTGGTGCCACAGTTTaGAGAGATGGGCCCGGACAT +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLACGATV*RDGPGH
Trigger: ATGTCCGGGCCCATCTCTTCAAACTGTGGCACCACA...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCCTTCTGCTCCTTGGTaGGCCCATGCACAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWPSAPW*AHAQSA
Trigger: TGCTGACTGTGCATGGGCGCACCAAGGAGCAGAAGG...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGGCTAGGAGAGCCGCCTaGACAAACACCTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWARRAA*TNTSGS
Trigger: TGACCCAGAGGTGTTTGTCCAGGCGGCTCTCCTAGC...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGGCCCCTTCTGCTCCTTaGTGCGCCCATGCACAGTCA +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWAPSAP*CAHAQS
Trigger: TGACTGTGCATGGGCGCACCAAGGAGCAGAAGGGGC...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGGCCATGGGCCCCTTCTaGTCCTTGGTGCGCCCATGC +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLAMGPF*SLVRPC
Trigger: GCATGGGCGCACCAAGGAGCAGAAGGGGCCCATGGC...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGCCATGGGCCCCTTCTaGTCCTTGGTGCGCCCATGC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGAMGPF*SLVRPC
Trigger: GCATGGGCGCACCAAGGAGCAGAAGGGGCCCATGGC...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGAAGAGGGCAGGGTTGTaGAGGTTCCCCTCTGCACTC +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLKRAGL*RFPSAL
Trigger: GAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTT...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGAAGAGGGCAGGGTTGTaGAGGTTCCCCTCTGCACTC +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWKRAGL*RFPSAL
Trigger: GAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTT...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTTGGACAAGCCCTCCATaGTGCCTTCTTCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLAWTSPP*CLLLPP
Trigger: TGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCA...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCAAGCTAGCTCACTCTaGTCCACCATGGGTGCCACC +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWQASSL*STMGAT
Trigger: GGTGGCACCCATGGTGGACCAGAGTGAGCTAGCTTG...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTCCCCTCTGCACTCATaGCTCCCTGCACGCCGGTGT +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGSPLHS*LPARRC
Trigger: ACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGTGTGGTGCCACAGTTTaGAGAGATGGGCCCGGACAT +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWCGATV*RDGPGH
Trigger: ATGTCCGGGCCCATCTCTTCAAACTGTGGCACCACA...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGCCATGGGCCCCTTCTaGTCCTTGGTGCGCCCATGC +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKEAMGPF*SLVRPC
Trigger: GCATGGGCGCACCAAGGAGCAGAAGGGGCCCATGGC...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGCCAGGAGGCTGTTCCTaGCATGGGCCCCTTCTGCTC +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEPGGCS*HGPLLL
Trigger: GAGCAGAAGGGGCCCATGGCAGGAACAGCCTCCTGG...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCCAGGAGGCTGTTCCTaGCATGGGCCCCTTCTGCTC +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPPGGCS*HGPLLL
Trigger: GAGCAGAAGGGGCCCATGGCAGGAACAGCCTCCTGG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCACCGCTCCACATCCTaGAGGCATTGGATGTTCCCA +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLHRSTS*RHWMFP
Trigger: TGGGAACATCCAATGCCTGCAGGATGTGGAGCGGTG...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGGGCCTCACTCCTTCTTaGTGCCTAGACATGTCCTCC +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLGLTPS*CLDMSS
Trigger: GGAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCC...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGCGAAGCTTTAGCGCCTaGCTCACAGCAGCCACGCCC +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEERSFSA*LTAATP
Trigger: GGGCGTGGCTGCTGTGAGCCAGGCGCTAAAGCTTCG...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGGGCCGGATGTACGGCTaGCAGATCCAATGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWGRMYG*QIQWKA
Trigger: TGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCC...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCACAGAACTGCACAATaGGAGGCCTGTCCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPHRTAQ*EACPRG
Trigger: GCCCCGAGGACAGGCCTCTCATTGTGCAGTTCTGTG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTGGGTCAAAGGTTTTGTaGGGGTTCCTCAGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLAGSKVL*GFLSCF
Trigger: GAAACAACTGAGGAACCCTCACAAAACCTTTGACCC...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCGCACTCATGACTCCCTaGACGCCGGTGTCCTGGATG +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPALMTP*TPVSWM
Trigger: CATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGC...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGGCACTCATGACTCCCTaGACGCCGGTGTCCTGGATG +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEALMTP*TPVSWM
Trigger: CATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGC...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGGCACTCATGACTCCCTaGACGCCGGTGTCCTGGATG +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLALMTP*TPVSWM
Trigger: CATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGC...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGTGGACAAGCCCTCCATaGTGCCTTCTTCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWWTSPP*CLLLPP
Trigger: TGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCA...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGTCACAGGCCTCACCTaGTGGGCTTCCTGCAGTCCA +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGVTGLT*WASCSP
Trigger: TGGACTGCAGGAAGCCCAGCAGGTGAGGCCTGTGAC...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTGGACAAACACCTCTaGGTCATTGGCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWLDKHL*VIGTEL
Trigger: CAGTTCTGTGCCAATGACCCAGAGGTGTTTGTCCAG...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTTGGCTATCATCTGTaGGCAGCCCAAGTTCAGGTC +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWLGYHL*AAQVQV
Trigger: GACCTGAACTTGGGCTGCCCACAGATGATAGCCAAG...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGGCCCCTTCTGCTCCTTaGTGCGCCCATGCACAGTCA +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLAPSAP*CAHAQS
Trigger: TGACTGTGCATGGGCGCACCAAGGAGCAGAAGGGGC...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTAGGCTGTTCCTGCCATaGGCCCCTTCTGCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGRLFLP*APSAPW
Trigger: CCAAGGAGCAGAAGGGGCCCATGGCAGGAACAGCCT...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGGCTGTTCCTGCCATaGGCCCCTTCTGCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLRLFLP*APSAPW
Trigger: CCAAGGAGCAGAAGGGGCCCATGGCAGGAACAGCCT...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTACATCCTGCAGGCATTaGATGTTCCCATTGGCAAAC +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLATSCRH*MFPLAN
Trigger: GTTTGCCAATGGGAACATCCAATGCCTGCAGGATGT...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGTTCAGAGAAACCACTTaGTGTCACAGGCCTCACCTG +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWFRETT*CHRPHL
Trigger: CAGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAA...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTAACAGAATCATTCTTTaGAGAAGGTCCCACTCCTCC +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLANRIIL*RRSHSS
Trigger: GGAGGAGTGGGACCTTCTTCAAAGAATGATTCTGTT...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGTGCACAGTCAGCAGCTaGCAGCCAGCCTTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKECTVSS*QPAFSS
Trigger: GCTGGAGAAGGCTGGCTGTCAGCTGCTGACTGTGCA...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGAATCTGCTGTCTCTCTaGAAGCTCGCTTCTTGCAGC +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWNLLSL*KLASCS
Trigger: GCTGCAAGAAGCGAGCTTTCAGAGAGACAGCAGATT...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTTTAAAAAGCAATCCATaGCCTGGGCAATCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLALKSNP*PGQSAV
Trigger: GACAGCAGATTGCCCAGGTCATGGATTGCTTTTTAA...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGTCATTGGCACAGAACTaGACAATGAGAGGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLSLAQN*TMRGLS
Trigger: GGACAGGCCTCTCATTGTGCAGTTCTGTGCCAATGA...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAAGAGGGCAGGGTTGTaGAGGTTCCCCTCTGCACTC +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLKRAGL*RFPSAL
Trigger: GAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTT...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGATGACCTGGGCAATCTaGTGTCTCTCTGAAAGCTCG +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLMTWAI*CLSESS
Trigger: CGAGCTTTCAGAGAGACAGCAGATTGCCCAGGTCAT...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGTCACAGGCCTCACCTaGTGGGCTTCCTGCAGTCCA +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKEVTGLT*WASCSP
Trigger: TGGACTGCAGGAAGCCCAGCAGGTGAGGCCTGTGAC...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTCAAGCTAGCTCACTCTaGTCCACCATGGGTGCCACC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGQASSL*STMGAT
Trigger: GGTGGCACCCATGGTGGACCAGAGTGAGCTAGCTTG...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCAAGCTAGCTCACTCTaGTCCACCATGGGTGCCACC +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPQASSL*STMGAT
Trigger: GGTGGCACCCATGGTGGACCAGAGTGAGCTAGCTTG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGGCTAGGAGAGCCGCCTaGACAAACACCTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEARRAA*TNTSGS
Trigger: TGACCCAGAGGTGTTTGTCCAGGCGGCTCTCCTAGC...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCCAGGGTCTTCACTTTaGCCAGCTCTTCTCGAAGTT +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLPGSSL*PALLEV
Trigger: AACTTCGAGAAGAGCTGGCCAAAGTGAAGACCCTGG...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTCACACTTGGCATATTTaGGTTTCAGGGAAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLAHTWHI*VSGKGQ
Trigger: TTGACCCTTCCCTGAAACCCAAATATGCCAAGTGTG...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTACACCTATTGCCCTTTaGATTTCCACACTGGTCACA +
Preference number: 4 (lower is better)
Translates to: KSVQASLAALGWGWLLLATPIAL*ISTLVT
Trigger: TGTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGT...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGTTCAGAGAAACCACTTaGTGTCACAGGCCTCACCTG +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLFRETT*CHRPHL
Trigger: CAGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAA...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGTTCAGAGAAACCACTTaGTGTCACAGGCCTCACCTG +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWFRETT*CHRPHL
Trigger: CAGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAA...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTGTGGTGCCACAGTTTaGAGAGATGGGCCCGGACAT +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLCGATV*RDGPGH
Trigger: ATGTCCGGGCCCATCTCTTCAAACTGTGGCACCACA...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTGTGGTGCCACAGTTTaGAGAGATGGGCCCGGACAT +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGCGATV*RDGPGH
Trigger: ATGTCCGGGCCCATCTCTTCAAACTGTGGCACCACA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGGGGTCAAAGGTTTTGTaGGGGTTCCTCAGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWGSKVL*GFLSCF
Trigger: GAAACAACTGAGGAACCCTCACAAAACCTTTGACCC...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGCACCGCTCCACATCCTaGAGGCATTGGATGTTCCCA +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLHRSTS*RHWMFP
Trigger: TGGGAACATCCAATGCCTGCAGGATGTGGAGCGGTG...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCGGCCTCACTCCTTCTTaGTGCCTAGACATGTCCTCC +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPGLTPS*CLDMSS
Trigger: GGAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCC...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGGGCCTCACTCCTTCTTaGTGCCTAGACATGTCCTCC +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLGLTPS*CLDMSS
Trigger: GGAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCC...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGCCTTCTCCAGCATCTaGGCGTACCTCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGAFSSI*AYLTVL
Trigger: CAAGACAGTGAGGTACGCCCAGATGCTGGAGAAGGC...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGGCCTTCTCCAGCATCTaGGCGTACCTCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLAFSSI*AYLTVL
Trigger: CAAGACAGTGAGGTACGCCCAGATGCTGGAGAAGGC...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGATTGGATGTTCCCATTaGCAAACACAGGGATTCCCA +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWIGCSH*QTQGFP
Trigger: TGGGAATCCCTGTGTTTGCCAATGGGAACATCCAAT...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGTGTACCTGTAGCGTGTaGTGCCACAGTTTGAAGAGA +
Preference number: 4 (lower is better)
Translates to: FLKSVQASLAALGWGWLLCTCSV*CHSLKR
Trigger: TCTCTTCAAACTGTGGCACCACACGCTACAGGTACA...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCGGCCGGATGTACGGCTaGCAGATCCAATGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPGRMYG*QIQWKA
Trigger: TGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCC...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGCCGGATGTACGGCTaGCAGATCCAATGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGGRMYG*QIQWKA
Trigger: TGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCC...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCATGCACAGTCAGCAGCTaGCAGCCAGCCTTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGACTVSS*QPAFSS
Trigger: GCTGGAGAAGGCTGGCTGTCAGCTGCTGACTGTGCA...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGGACAAGCCCTCCATaGTGCCTTCTTCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPWTSPP*CLLLPP
Trigger: TGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCA...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGTGGACAAGCCCTCCATaGTGCCTTCTTCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEWTSPP*CLLLPP
Trigger: TGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCA...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCTTGGCTATCATCTGTaGGCAGCCCAAGTTCAGGTC +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPLGYHL*AAQVQV
Trigger: GACCTGAACTTGGGCTGCCCACAGATGATAGCCAAG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGCCTTCTCCAGCATCTaGGCGTACCTCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKEAFSSI*AYLTVL
Trigger: CAAGACAGTGAGGTACGCCCAGATGCTGGAGAAGGC...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGATTGGATGTTCCCATTaGCAAACACAGGGATTCCCA +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWIGCSH*QTQGFP
Trigger: TGGGAATCCCTGTGTTTGCCAATGGGAACATCCAAT...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCACACTTGGCATATTTaGGTTTCAGGGAAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: RHFLKSVQASLAALGWGWHTWHI*VSGKGQ
Trigger: TTGACCCTTCCCTGAAACCCAAATATGCCAAGTGTG...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTAATCTGCTGTCTCTCTaGAAGCTCGCTTCTTGCAGC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGNLLSL*KLASCS
Trigger: GCTGCAAGAAGCGAGCTTTCAGAGAGACAGCAGATT...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCAATCTGCTGTCTCTCTaGAAGCTCGCTTCTTGCAGC +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPNLLSL*KLASCS
Trigger: GCTGCAAGAAGCGAGCTTTCAGAGAGACAGCAGATT...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTCATTGGCACAGAACTaGACAATGAGAGGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGSLAQN*TMRGLS
Trigger: GGACAGGCCTCTCATTGTGCAGTTCTGTGCCAATGA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATGACCTGGGCAATCTaGTGTCTCTCTGAAAGCTCG +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEMTWAI*CLSESS
Trigger: CGAGCTTTCAGAGAGACAGCAGATTGCCCAGGTCAT...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCGTCACAGGCCTCACCTaGTGGGCTTCCTGCAGTCCA +
Preference number: 4 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISVTGLT*WASCSP
Trigger: TGGACTGCAGGAAGCCCAGCAGGTGAGGCCTGTGAC...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTCTGGACAAACACCTCTaGGTCATTGGCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGLDKHL*VIGTEL
Trigger: CAGTTCTGTGCCAATGACCCAGAGGTGTTTGTCCAG...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCTGGACAAACACCTCTaGGTCATTGGCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPLDKHL*VIGTEL
Trigger: CAGTTCTGTGCCAATGACCCAGAGGTGTTTGTCCAG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGCTTGGCTATCATCTGTaGGCAGCCCAAGTTCAGGTC +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKELGYHL*AAQVQV
Trigger: GACCTGAACTTGGGCTGCCCACAGATGATAGCCAAG...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCATAGTGACCTCTCTTaGCTATCATCTGTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPHSDLS*LSSVGS
Trigger: GCTGCCCACAGATGATAGCCAAGAGAGGTCACTATG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTCATAGTGACCTCTCTTaGCTATCATCTGTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGHSDLS*LSSVGS
Trigger: GCTGCCCACAGATGATAGCCAAGAGAGGTCACTATG...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTTCAGAGAAACCACTTaGTGTCACAGGCCTCACCTG +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGFRETT*CHRPHL
Trigger: CAGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACACAGAACTGCACAATaGGAGGCCTGTCCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLHRTAQ*EACPRG
Trigger: GCCCCGAGGACAGGCCTCTCATTGTGCAGTTCTGTG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGCACGAATTTTGCACGTaGCAGGAACAGAGAGTCGCT +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKEHEFCT*QEQRVA
Trigger: AGCGACTCTCTGTTCCTGTCACGTGCAAAATTCGTG...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGGGGTCAAAGGTTTTGTaGGGGTTCCTCAGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLGSKVL*GFLSCF
Trigger: GAAACAACTGAGGAACCCTCACAAAACCTTTGACCC...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCAGGCCTCACTCCTTCTTaGTGCCTAGACATGTCCTCC +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGAGLTPS*CLDMSS
Trigger: GGAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCC...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACACTCTGGTCCACCATaGGTGCCACCACATGTCGGG +
Preference number: 4 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLHSGPP*VPPHVG
Trigger: CCCGACATGTGGTGGCACCCATGGTGGACCAGAGTG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGCTGGACAAACACCTCTaGGTCATTGGCACAGAACTG +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKELDKHL*VIGTEL
Trigger: CAGTTCTGTGCCAATGACCCAGAGGTGTTTGTCCAG...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCGCTAGGAGAGCCGCCTaGACAAACACCTCTGGGTCA +
Preference number: 4 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISARRAA*TNTSGS
Trigger: TGACCCAGAGGTGTTTGTCCAGGCGGCTCTCCTAGC...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGCATAGTGACCTCTCTTaGCTATCATCTGTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKEHSDLS*LSSVGS
Trigger: GCTGCCCACAGATGATAGCCAAGAGAGGTCACTATG...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGTGTCTTGTCAATTTCTaGGAAGACACGAATTTTGCA +
Preference number: 4 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWCLVNF*EDTNFA
Trigger: TGCAAAATTCGTGTCTTCCCAGAAATTGACAAGACA...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGACATCCTGCAGGCATTaGATGTTCCCATTGGCAAAC +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEETSCRH*MFPLAN
Trigger: GTTTGCCAATGGGAACATCCAATGCCTGCAGGATGT...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTACATCCTGCAGGCATTaGATGTTCCCATTGGCAAAC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGTSCRH*MFPLAN
Trigger: GTTTGCCAATGGGAACATCCAATGCCTGCAGGATGT...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTGTACCTGTAGCGTGTaGTGCCACAGTTTGAAGAGA +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLCTCSV*CHSLKR
Trigger: TCTCTTCAAACTGTGGCACCACACGCTACAGGTACA...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTACCTGTAGCGTGTaGTGCCACAGTTTGAAGAGA +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPCTCSV*CHSLKR
Trigger: TCTCTTCAAACTGTGGCACCACACGCTACAGGTACA...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCAGGCCGGATGTACGGCTaGCAGATCCAATGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGAGRMYG*QIQWKA
Trigger: TGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCC...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCACACTGGTCACACTTaGCATATTTGGGTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPHTGHT*HIWVSG
Trigger: CCCTGAAACCCAAATATGCCAAGTGTGACCAGTGTG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGCACACTGGTCACACTTaGCATATTTGGGTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEHTGHT*HIWVSG
Trigger: CCCTGAAACCCAAATATGCCAAGTGTGACCAGTGTG...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTAACAGAATCATTCTTTaGAGAAGGTCCCACTCCTCC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGNRIIL*RRSHSS
Trigger: GGAGGAGTGGGACCTTCTTCAAAGAATGATTCTGTT...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGTTAAAAAGCAATCCATaGCCTGGGCAATCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEELKSNP*PGQSAV
Trigger: GACAGCAGATTGCCCAGGTCATGGATTGCTTTTTAA...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTTAAAAAGCAATCCATaGCCTGGGCAATCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGLKSNP*PGQSAV
Trigger: GACAGCAGATTGCCCAGGTCATGGATTGCTTTTTAA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTATTGGATGTTCCCATTaGCAAACACAGGGATTCCCA +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGIGCSH*QTQGFP
Trigger: TGGGAATCCCTGTGTTTGCCAATGGGAACATCCAAT...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTGGATGTTCCCATTaGCAAACACAGGGATTCCCA +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEIGCSH*QTQGFP
Trigger: TGGGAATCCCTGTGTTTGCCAATGGGAACATCCAAT...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGCACACTTGGCATATTTaGGTTTCAGGGAAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: HCQTPPADINRFFCVKEEHTWHI*VSGKGQ
Trigger: TTGACCCTTCCCTGAAACCCAAATATGCCAAGTGTG...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTCACACTTGGCATATTTaGGTTTCAGGGAAGGGTCAA +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGHTWHI*VSGKGQ
Trigger: TTGACCCTTCCCTGAAACCCAAATATGCCAAGTGTG...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTACACCTATTGCCCTTTaGATTTCCACACTGGTCACA +
Preference number: 4 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGTPIAL*ISTLVT
Trigger: TGTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGT...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCACACGAATTTTGCACGTaGCAGGAACAGAGAGTCGCT +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGAHEFCT*QEQRVA
Trigger: AGCGACTCTCTGTTCCTGTCACGTGCAAAATTCGTG...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCAAATCTGCTGTCTCTCTaGAAGCTCGCTTCTTGCAGC +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGANLLSL*KLASCS
Trigger: GCTGCAAGAAGCGAGCTTTCAGAGAGACAGCAGATT...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGTTAAAAAGCAATCCATaGCCTGGGCAATCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKELKSNP*PGQSAV
Trigger: GACAGCAGATTGCCCAGGTCATGGATTGCTTTTTAA...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACACCGCTCCACATCCTaGAGGCATTGGATGTTCCCA +
Preference number: 4 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLHRSTS*RHWMFP
Trigger: TGGGAACATCCAATGCCTGCAGGATGTGGAGCGGTG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCACCAGGGTCTTCACTTTaGCCAGCTCTTCTCGAAGTT +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGAPGSSL*PALLEV
Trigger: AACTTCGAGAAGAGCTGGCCAAAGTGAAGACCCTGG...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGACACCTATTGCCCTTTaGATTTCCACACTGGTCACA +
Preference number: 4 (lower is better)
Translates to: QHCQTPPADINRFFCVKETPIAL*ISTLVT
Trigger: TGTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGT...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCCACGAATTTTGCACGTaGCAGGAACAGAGAGTCGCT +
Preference number: 4 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISHEFCT*QEQRVA
Trigger: AGCGACTCTCTGTTCCTGTCACGTGCAAAATTCGTG...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR TCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCAGGGTCAAAGGTTTTGTaGGGGTTCCTCAGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGAGSKVL*GFLSCF
Trigger: GAAACAACTGAGGAACCCTCACAAAACCTTTGACCC...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCATGACCTGGGCAATCTaGTGTCTCTCTGAAAGCTCG +
Preference number: 4 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISMTWAI*CLSESS
Trigger: CGAGCTTTCAGAGAGACAGCAGATTGCCCAGGTCAT...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACTTGGCTATCATCTGTaGGCAGCCCAAGTTCAGGTC +
Preference number: 4 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLLGYHL*AAQVQV
Trigger: GACCTGAACTTGGGCTGCCCACAGATGATAGCCAAG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTTTGGATTTCCACACTaGTCACACTTGGCATATTTG +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPFGFPH*SHLAYL
Trigger: CAAATATGCCAAGTGTGACCAGTGTGGAAATCCAAA...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTTTGGATTTCCACACTaGTCACACTTGGCATATTTG +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLFGFPH*SHLAYL
Trigger: CAAATATGCCAAGTGTGACCAGTGTGGAAATCCAAA...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTATCATTGGCACAGAACTaGACAATGAGAGGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLSLAQN*TMRGLS
Trigger: GGACAGGCCTCTCATTGTGCAGTTCTGTGCCAATGA...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR GCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTAATGACCTGGGCAATCTaGTGTCTCTCTGAAAGCTCG +
Preference number: 4 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLMTWAI*CLSESS
Trigger: CGAGCTTTCAGAGAGACAGCAGATTGCCCAGGTCAT...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTCTTGTCAATTTCTaGGAAGACACGAATTTTGCA +
Preference number: 4 (lower is better)
Translates to: QTPPADINRFFCVKEEIPCLVNF*EDTNFA
Trigger: TGCAAAATTCGTGTCTTCCCAGAAATTGACAAGACA...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTGTCTTGTCAATTTCTaGGAAGACACGAATTTTGCA +
Preference number: 4 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLCLVNF*EDTNFA
Trigger: TGCAAAATTCGTGTCTTCCCAGAAATTGACAAGACA...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCCACACTGGTCACACTTaGCATATTTGGGTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISHTGHT*HIWVSG
Trigger: CCCTGAAACCCAAATATGCCAAGTGTGACCAGTGTG...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCAACACCTATTGCCCTTTaGATTTCCACACTGGTCACA +
Preference number: 4 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGATPIAL*ISTLVT
Trigger: TGTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGT...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CCA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTATGTACCTGTAGCGTGTaGTGCCACAGTTTGAAGAGA +
Preference number: 4 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLCTCSV*CHSLKR
Trigger: TCTCTTCAAACTGTGGCACCACACGCTACAGGTACA...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 90 bp AGGACTCCGGCCCTCAAAGAGGGCAGGGTTGTGCAGGTTCCCCTCTaGACTCATGACTCCCTGCACGCCGGTGTCCTGGATGCACCGCTC +
Preference number: 5 (lower is better)
Translates to: RTPALKEGRVVQVPL*THDSLHAGVLDAPL
Trigger: GAGCGGTGCATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGAGGGCCGGAGTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 90 bp AGCTCCCACACAGCAGGACTCCGGCCCTCAAAGAGGGCAGGGTTGTaGAGGTTCCCCTCTGCACTCATGACTCCCTGCACGCCGGTGTCC +
Preference number: 5 (lower is better)
Translates to: SSHTAGLRPSKRAGL*RFPSALMTPCTPVS
Trigger: GGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGAGGGCCGGAGTCCTGCTGTGTGGGAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 90 bp GGCCCTCAAAGAGGGCAGGGTTGTGCAGGTTCCCCTCTGCACTCATaGCTCCCTGCACGCCGGTGTCCTGGATGCACCGCTCCACATCCT +
Preference number: 5 (lower is better)
Translates to: GPQRGQGCAGSPLHS*LPARRCPGCTAPHP
Trigger: AGGATGTGGAGCGGTGCATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGAGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 90 bp GTTCCCAGGAGGCTGTTCCTGCCATGGGCCCCTTCTGCTCCTTGGTaGGCCCATGCACAGTCAGCAGCTGACAGCCAGCCTTCTCCAGCA +
Preference number: 5 (lower is better)
Translates to: VPRRLFLPWAPSAPW*AHAQSAADSQPSPA
Trigger: TGCTGGAGAAGGCTGGCTGTCAGCTGCTGACTGTGCATGGGCGCACCAAGGAGCAGAAGGGGCCCATGGCAGGAACAGCCTCCTGGGAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000143139.8
ENSMUST00000167023.8
CDS TCA 90 bp TTGTCAGCTGGCCTCACTCCTTCTTGCTGCCTAGACATGTCCTCCTaGCACCGAAGCTTTAGCGCCTGGCTCACAGCAGCCACGCCCTCC +
Preference number: 5 (lower is better)
Translates to: LSAGLTPSCCLDMSS*HRSFSAWLTAATPS
Trigger: GGAGGGCGTGGCTGCTGTGAGCCAGGCGCTAAAGCTTCGGTGTCAGGAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCCAGCTGACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167023.8
CDS CCA 90 bp TGCAGGTTCCCCTCTGCACTCATGACTCCCTGCACGCCGGTGTCCTaGATGCACCGCTCCACATCCTGCAGGCATTGGATGTTCCCATTG +
Preference number: 5 (lower is better)
Translates to: CRFPSALMTPCTPVS*MHRSTSCRHWMFPL
Trigger: CAATGGGAACATCCAATGCCTGCAGGATGTGGAGCGGTGCATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGGCCTTCCGAACGGCCTaGATGTGTTCCCAGGAGGCT +
Preference number: 5 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWAFRTA*MCSQEA
Trigger: AGCCTCCTGGGAACACATCAAGGCCGTTCGGAAGGC...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTCTGAAAGCTCGCTTCTaGCAGCAGCCACGGCACAGA +
Preference number: 5 (lower is better)
Translates to: KSVQASLAALGWGWLLLALKARF*QQPRHR
Trigger: TCTGTGCCGTGGCTGCTGCAAGAAGCGAGCTTTCAG...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGGCCTTCCGAACGGCCTaGATGTGTTCCCAGGAGGCT +
Preference number: 5 (lower is better)
Translates to: RHFLKSVQASLAALGWGWAFRTA*MCSQEA
Trigger: AGCCTCCTGGGAACACATCAAGGCCGTTCGGAAGGC...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGTCAAAGAGGGCAGGGTaGTGCAGGTTCCCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWSKRAG*CRFPSA
Trigger: TGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGA...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTTGGCCTCACTCCTTCTaGCTGCCTAGACATGTCCTC +
Preference number: 5 (lower is better)
Translates to: KSVQASLAALGWGWLLLAWPHSF*LPRHVL
Trigger: GAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCCA...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTCCACCACTATTCTCCTaGCTCCCTTCCCTAGGTCCT +
Preference number: 5 (lower is better)
Translates to: KSVQASLAALGWGWLLLAPPLFS*LPSLGP
Trigger: AGGACCTAGGGAAGGGAGCAAGGAGAATAGTGGTGG...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 90 bp ATGACTCCCTGCACGCCGGTGTCCTGGATGCACCGCTCCACATCCTaGAGGCATTGGATGTTCCCATTGGCAAACACAGGGATTCCCACA +
Preference number: 5 (lower is better)
Translates to: MTPCTPVSWMHRSTS*RHWMFPLANTGIPT
Trigger: TGTGGGAATCCCTGTGTTTGCCAATGGGAACATCCAATGCCTGCAGGATGTGGAGCGGTGCATCCAGGACACCGGCGTGCAGGGAGTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 90 bp CTCCCTTCCCTAGGTCCTGGCCGGATGTACGGCTGGCAGATCCAATaGAAAGCAGGTAAGTTGTCAGCTGGCCTCACTCCTTCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: LPSLGPGRMYGWQIQ*KAGKLSAGLTPSCC
Trigger: GCAGCAAGAAGGAGTGAGGCCAGCTGACAACTTACCTGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCCAGGACCTAGGGAAGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGAAAGCTCGCTTCTaGCAGCAGCCACGGCACAGA +
Preference number: 5 (lower is better)
Translates to: FLKSVQASLAALGWGWLLLKARF*QQPRHR
Trigger: TCTGTGCCGTGGCTGCTGCAAGAAGCGAGCTTTCAG...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 90 bp AGTTTGAAGAGATGGGCCCGGACATACGATAGTGGACAAGGGTGTTaGCGCACAATGTCCAGGTACTCCTCGGCCAGCTCCCACACAGCA +
Preference number: 5 (lower is better)
Translates to: SLKRWARTYDSGQGC*RTMSRYSSASSHTA
Trigger: TGCTGTGTGGGAGCTGGCCGAGGAGTACCTGGACATTGTGCGGCAACACCCTTGTCCACTATCGTATGTCCGGGCCCATCTCTTCAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTCACATCCTGCAGGCATaGGATGTTCCCATTGGCAAA +
Preference number: 5 (lower is better)
Translates to: KSVQASLAALGWGWLLLAHILQA*DVPIGK
Trigger: TTTGCCAATGGGAACATCCAATGCCTGCAGGATGTG...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCCACCACTATTCTCCTaGCTCCCTTCCCTAGGTCCT +
Preference number: 5 (lower is better)
Translates to: RHFLKSVQASLAALGWGWPPLFS*LPSLGP
Trigger: AGGACCTAGGGAAGGGAGCAAGGAGAATAGTGGTGG...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTTCAGAGAAACCACTaGGTGTCACAGGCCTCACCT +
Preference number: 5 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWLQRNH*VSQASP
Trigger: AGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAAG...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 90 bp CTATTCTCCTTGCTCCCTTCCCTAGGTCCTGGCCGGATGTACGGCTaGCAGATCCAATGGAAAGCAGGTAAGTTGTCAGCTGGCCTCACT +
Preference number: 5 (lower is better)
Translates to: LFSLLPSLGPGRMYG*QIQWKAGKLSAGLT
Trigger: AGTGAGGCCAGCTGACAACTTACCTGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCCAGGACCTAGGGAAGGGAGCAAGGAGAATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGCTGCGTACCTCACTGTCTaGTCAATTTCTGGGAAGACA +
Preference number: 5 (lower is better)
Translates to: KSVQASLAALGWGWLLLAAYLTV*SISGKT
Trigger: TGTCTTCCCAGAAATTGACAAGACAGTGAGGTACGC...AGCCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCGCCTTCCGAACGGCCTaGATGTGTTCCCAGGAGGCT +
Preference number: 5 (lower is better)
Translates to: QTPPADINRFFCVKEEIPAFRTA*MCSQEA
Trigger: AGCCTCCTGGGAACACATCAAGGCCGTTCGGAAGGC...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGTCCAGGGTCTTCACTTaGGCCAGCTCTTCTCGAAGT +
Preference number: 5 (lower is better)
Translates to: FLKSVQASLAALGWGWLLSRVFT*ASSSRS
Trigger: ACTTCGAGAAGAGCTGGCCAAAGTGAAGACCCTGGA...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGTGGAAAGCAGGTAAGTaGTCAGCTGGCCTCACTCCT +
Preference number: 5 (lower is better)
Translates to: FLKSVQASLAALGWGWLLWKAGK*SAGLTP
Trigger: AGGAGTGAGGCCAGCTGACAACTTACCTGCTTTCCA...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGGGGAAGACACGAATTTaGCACGTGACAGGAACAGAG +
Preference number: 5 (lower is better)
Translates to: FLKSVQASLAALGWGWLLGKTRI*HVTGTE
Trigger: CTCTGTTCCTGTCACGTGCAAAATTCGTGTCTTCCC...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCATTGGATGTTCCCATaGGCAAACACAGGGATTCCC +
Preference number: 5 (lower is better)
Translates to: RHFLKSVQASLAALGWGWHWMFP*ANTGIP
Trigger: GGGAATCCCTGTGTTTGCCAATGGGAACATCCAATG...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTCAAAGAGGGCAGGGTaGTGCAGGTTCCCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: QTPPADINRFFCVKEEIPSKRAG*CRFPSA
Trigger: TGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGA...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGCTGGTTCTTCAGCTTATTCTaGGACAAGCCCTCCATGCTG +
Preference number: 5 (lower is better)
Translates to: LRVSRLHWLPWGGDGSCWFFSLF*DKPSML
Trigger: CAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAA...CCAGCAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTCTGAAAGCTCGCTTCTaGCAGCAGCCACGGCACAGA +
Preference number: 5 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGLKARF*QQPRHR
Trigger: TCTGTGCCGTGGCTGCTGCAAGAAGCGAGCTTTCAG...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 90 bp CTTCTCGAAGTTGCTGATGTACCTGTAGCGTGTGGTGCCACAGTTTaGAGAGATGGGCCCGGACATACGATAGTGGACAAGGGTGTTGCC +
Preference number: 5 (lower is better)
Translates to: LLEVADVPVACGATV*RDGPGHTIVDKGVA
Trigger: GGCAACACCCTTGTCCACTATCGTATGTCCGGGCCCATCTCTTCAAACTGTGGCACCACACGCTACAGGTACATCAGCAACTTCGAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 90 bp GGTTCCTCAGTTGTTTCTTCAGCTTATTCTTGGACAAGCCCTCCATaGTGCCTTCTTCTTCCTCCAGAGCCCGCTTGCTTCGACCACCAC +
Preference number: 5 (lower is better)
Translates to: GSSVVSSAYSWTSPP*CLLLPPEPACFDHH
Trigger: GTGGTGGTCGAAGCAAGCGGGCTCTGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAAACAACTGAGGAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 90 bp CTTGGTGTCACAGGCCTCACCTGCTGGGCTTCCTGCAGTCCAGGCTaGGTCCCTTTCCAGGCCAAAGACTTCTCTAATTTGGTCTTAAAA +
Preference number: 5 (lower is better)
Translates to: LGVTGLTCWASCSPG*VPFQAKDFSNLVLK
Trigger: TTTTAAGACCAAATTAGAGAAGTCTTTGGCCTGGAAAGGGACCCAGCCTGGACTGCAGGAAGCCCAGCAGGTGAGGCCTGTGACACCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGGCGTACCTCACTGTCTaGTCAATTTCTGGGAAGACA +
Preference number: 5 (lower is better)
Translates to: RHFLKSVQASLAALGWGWAYLTV*SISGKT
Trigger: TGTCTTCCCAGAAATTGACAAGACAGTGAGGTACGC...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGTCAAAGAGGGCAGGGTaGTGCAGGTTCCCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: QHCQTPPADINRFFCVKESKRAG*CRFPSA
Trigger: TGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGA...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTGGCCTCACTCCTTCTaGCTGCCTAGACATGTCCTC +
Preference number: 5 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLWPHSF*LPRHVL
Trigger: GAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCCA...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGTGGCCTCACTCCTTCTaGCTGCCTAGACATGTCCTC +
Preference number: 5 (lower is better)
Translates to: HCQTPPADINRFFCVKEEWPHSF*LPRHVL
Trigger: GAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCCA...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCCACCACTATTCTCCTaGCTCCCTTCCCTAGGTCCT +
Preference number: 5 (lower is better)
Translates to: QTPPADINRFFCVKEEIPPPLFS*LPSLGP
Trigger: AGGACCTAGGGAAGGGAGCAAGGAGAATAGTGGTGG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGCTCTTGTTCTTCAGCTTATTCTaGGACAAGCCCTCCATGCTG +
Preference number: 5 (lower is better)
Translates to: FLKSVQASLAALGWGWLLFFSLF*DKPSML
Trigger: CAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAA...CAAGAGCCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp AGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGGATGGTCACACTTGGCATATTaGGGTTTCAGGGAAGGGTCA +
Preference number: 5 (lower is better)
Translates to: RHFLKSVQASLAALGWGWSHLAY*GFREGS
Trigger: TGACCCTTCCCTGAAACCCAAATATGCCAAGTGTGA...CCATCCCCACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 90 bp GACCTCTCTTGGCTATCATCTGTGGGCAGCCCAAGTTCAGGTCAATaGCATCACAGTAATCTTGTGCTAGGAGAGCCGCCTGGACAAACA +
Preference number: 5 (lower is better)
Translates to: DLSWLSSVGSPSSGQ*HHSNLVLGEPPGQT
Trigger: TGTTTGTCCAGGCGGCTCTCCTAGCACAAGATTACTGTGATGCCATTGACCTGAACTTGGGCTGCCCACAGATGATAGCCAAGAGAGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000129955.2
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTCCAGGGTCTTCACTTaGGCCAGCTCTTCTCGAAGT +
Preference number: 5 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGSRVFT*ASSSRS
Trigger: ACTTCGAGAAGAGCTGGCCAAAGTGAAGACCCTGGA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGTGGAAAGCAGGTAAGTaGTCAGCTGGCCTCACTCCT +
Preference number: 5 (lower is better)
Translates to: HCQTPPADINRFFCVKEEWKAGK*SAGLTP
Trigger: AGGAGTGAGGCCAGCTGACAACTTACCTGCTTTCCA...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTGGAAAGCAGGTAAGTaGTCAGCTGGCCTCACTCCT +
Preference number: 5 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGWKAGK*SAGLTP
Trigger: AGGAGTGAGGCCAGCTGACAACTTACCTGCTTTCCA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 90 bp TCCTCAGTTGTTTCTTCAGCTTATTCTTGGACAAGCCCTCCATGCTaGCTTCTTCTTCCTCCAGAGCCCGCTTGCTTCGACCACCACTAT +
Preference number: 5 (lower is better)
Translates to: SSVVSSAYSWTSPPC*LLLPPEPACFDHHY
Trigger: ATAGTGGTGGTCGAAGCAAGCGGGCTCTGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAAACAACTGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGAACACCTCTGGGTCATaGGCACAGAACTGCACAATG +
Preference number: 5 (lower is better)
Translates to: HCQTPPADINRFFCVKEENTSGS*AQNCTM
Trigger: CATTGTGCAGTTCTGTGCCAATGACCCAGAGGTGTT...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCAACACCTCTGGGTCATaGGCACAGAACTGCACAATG +
Preference number: 5 (lower is better)
Translates to: QTPPADINRFFCVKEEIPNTSGS*AQNCTM
Trigger: CATTGTGCAGTTCTGTGCCAATGACCCAGAGGTGTT...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTGGGAAGACACGAATTTaGCACGTGACAGGAACAGAG +
Preference number: 5 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGGKTRI*HVTGTE
Trigger: CTCTGTTCCTGTCACGTGCAAAATTCGTGTCTTCCC...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGCATTGGATGTTCCCATaGGCAAACACAGGGATTCCC +
Preference number: 5 (lower is better)
Translates to: HCQTPPADINRFFCVKEEHWMFP*ANTGIP
Trigger: GGGAATCCCTGTGTTTGCCAATGGGAACATCCAATG...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCATTGGATGTTCCCATaGGCAAACACAGGGATTCCC +
Preference number: 5 (lower is better)
Translates to: QTPPADINRFFCVKEEIPHWMFP*ANTGIP
Trigger: GGGAATCCCTGTGTTTGCCAATGGGAACATCCAATG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGCACATCCTGCAGGCATaGGATGTTCCCATTGGCAAA +
Preference number: 5 (lower is better)
Translates to: HCQTPPADINRFFCVKEEHILQA*DVPIGK
Trigger: TTTGCCAATGGGAACATCCAATGCCTGCAGGATGTG...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGTCCAGGGTCTTCACTTaGGCCAGCTCTTCTCGAAGT +
Preference number: 5 (lower is better)
Translates to: QHCQTPPADINRFFCVKESRVFT*ASSSRS
Trigger: ACTTCGAGAAGAGCTGGCCAAAGTGAAGACCCTGGA...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGCCACACTGGTCACACTaGGCATATTTGGGTTTCAGG +
Preference number: 5 (lower is better)
Translates to: HCQTPPADINRFFCVKEEPHWSH*AYLGFR
Trigger: CCTGAAACCCAAATATGCCAAGTGTGACCAGTGTGG...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCCACACCTATTGCCCTTaGGATTTCCACACTGGTCAC +
Preference number: 5 (lower is better)
Translates to: QTPPADINRFFCVKEEIPHTYCP*DFHTGH
Trigger: GTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGTG...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTCACACTTGGCATATTaGGGTTTCAGGGAAGGGTCA +
Preference number: 5 (lower is better)
Translates to: QTPPADINRFFCVKEEIPSHLAY*GFREGS
Trigger: TGACCCTTCCCTGAAACCCAAATATGCCAAGTGTGA...GGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGCACACCTATTGCCCTTaGGATTTCCACACTGGTCAC +
Preference number: 5 (lower is better)
Translates to: QHCQTPPADINRFFCVKEHTYCP*DFHTGH
Trigger: GTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGTG...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCCTGAAAGCTCGCTTCTaGCAGCAGCCACGGCACAGA +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISLKARF*QQPRHR
Trigger: TCTGTGCCGTGGCTGCTGCAAGAAGCGAGCTTTCAG...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGCAACAGAATCATTCTTaGAAGAAGGTCCCACTCCTC +
Preference number: 5 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLQQNHS*KKVPLL
Trigger: GAGGAGTGGGACCTTCTTCAAAGAATGATTCTGTTG...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCCCACCACTATTCTCCTaGCTCCCTTCCCTAGGTCCT +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISPPLFS*LPSLGP
Trigger: AGGACCTAGGGAAGGGAGCAAGGAGAATAGTGGTGG...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGTTCTTCAGCTTATTCTaGGACAAGCCCTCCATGCTG +
Preference number: 5 (lower is better)
Translates to: QHCQTPPADINRFFCVKEFFSLF*DKPSML
Trigger: CAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAA...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCACTTCAGAGAAACCACTaGGTGTCACAGGCCTCACCT +
Preference number: 5 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGALQRNH*VSQASP
Trigger: AGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAAG...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCACATTGGATGTTCCCATaGGCAAACACAGGGATTCCC +
Preference number: 5 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGAHWMFP*ANTGIP
Trigger: GGGAATCCCTGTGTTTGCCAATGGGAACATCCAATG...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTATGGCCTCACTCCTTCTaGCTGCCTAGACATGTCCTC +
Preference number: 5 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLWPHSF*LPRHVL
Trigger: GAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCCA...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGGTGAGGGTTCCTCAGTaGTTTCTTCAGCTTATTCTT +
Preference number: 5 (lower is better)
Translates to: HCQTPPADINRFFCVKEEVRVPQ*FLQLIL
Trigger: AAGAATAAGCTGAAGAAACAACTGAGGAACCCTCAC...CTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CTGAGTAAAGGCATTTCCTTAAGAGTGTCCAGGCTTCATTGGCTGCCCTGGGGTTTAAACACACACCTATaGCCCTTTGGATTTCCACAC +
Preference number: 5 (lower is better)
Translates to: LSKGISLRVSRLHWLPWGLNTHL*PFGFPH
Trigger: GTGTGGAAATCCAAAGGGCAATAGGTGTGTGTTTAA...ACCCCAGGGCAGCCAATGAAGCCTGGACACTCTTAAGGAAATGCCTTTACTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp GACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGTTAAACACACACCTATaGCCCTTTGGATTTCCACAC +
Preference number: 5 (lower is better)
Translates to: DPTCRHQQVLLCQRGDSLLNTHL*PFGFPH
Trigger: GTGTGGAAATCCAAAGGGCAATAGGTGTGTGTTTAA...CAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCAACACCTCTGGGTCATaGGCACAGAACTGCACAATG +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISNTSGS*AQNCTM
Trigger: CATTGTGCAGTTCTGTGCCAATGACCCAGAGGTGTT...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCGGGAAGACACGAATTTaGCACGTGACAGGAACAGAG +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISGKTRI*HVTGTE
Trigger: CTCTGTTCCTGTCACGTGCAAAATTCGTGTCTTCCC...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCCACATCCTGCAGGCATaGGATGTTCCCATTGGCAAA +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISHILQA*DVPIGK
Trigger: TTTGCCAATGGGAACATCCAATGCCTGCAGGATGTG...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACATTGCCAGACCCCACCTGCAGACATCAACAGGTTCTTCTGTGTCAAAGAGGTGAGGGTTCCTCAGTaGTTTCTTCAGCTTATTCTT +
Preference number: 5 (lower is better)
Translates to: QHCQTPPADINRFFCVKEVRVPQ*FLQLIL
Trigger: AAGAATAAGCTGAAGAAACAACTGAGGAACCCTCAC...CTCTTTGACACAGAAGAACCTGTTGATGTCTGCAGGTGGGGTCTGGCAATGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCCCACACTGGTCACACTaGGCATATTTGGGTTTCAGG +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISPHWSH*AYLGFR
Trigger: CCTGAAACCCAAATATGCCAAGTGTGACCAGTGTGG...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCCACACCTATTGCCCTTaGGATTTCCACACTGGTCAC +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISHTYCP*DFHTGH
Trigger: GTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGTG...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACTTCAGAGAAACCACTaGGTGTCACAGGCCTCACCT +
Preference number: 5 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLLQRNH*VSQASP
Trigger: AGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAAG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 90 bp TCACACTTGGCATATTTGGGTTTCAGGGAAGGGTCAAAGGTTTTGTaGGGGTTCCTCAGTTGTTTCTTCAGCTTATTCTTGGACAAGCCC +
Preference number: 5 (lower is better)
Translates to: SHLAYLGFREGSKVL*GFLSCFFSLFLDKP
Trigger: GGGCTTGTCCAAGAATAAGCTGAAGAAACAACTGAGGAACCCTCACAAAACCTTTGACCCTTCCCTGAAACCCAAATATGCCAAGTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACACACCTATTGCCCTTaGGATTTCCACACTGGTCAC +
Preference number: 5 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLHTYCP*DFHTGH
Trigger: GTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGTG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 90 bp ACCTCACTGTCTTGTCAATTTCTGGGAAGACACGAATTTTGCACGTaGCAGGAACAGAGAGTCGCTCATGAGCCAACAGAATCATTCTTT +
Preference number: 5 (lower is better)
Translates to: TSLSCQFLGRHEFCT*QEQRVAHEPTESFF
Trigger: AAAGAATGATTCTGTTGGCTCATGAGCGACTCTCTGTTCCTGTCACGTGCAAAATTCGTGTCTTCCCAGAAATTGACAAGACAGTGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000129955.2
ENSMUST00000143139.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTAGCGTACCTCACTGTCTaGTCAATTTCTGGGAAGACA +
Preference number: 5 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLAYLTV*SISGKT
Trigger: TGTCTTCCCAGAAATTGACAAGACAGTGAGGTACGC...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTATTCTTCAGCTTATTCTaGGACAAGCCCTCCATGCTG +
Preference number: 5 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLFFSLF*DKPSML
Trigger: CAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAA...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTATCACACTTGGCATATTaGGGTTTCAGGGAAGGGTCA +
Preference number: 5 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLSHLAY*GFREGS
Trigger: TGACCCTTCCCTGAAACCCAAATATGCCAAGTGTGA...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp TCTCTGAAATGGTTTATTGTTCAGTGCTGGAAACACAAGTGTGGGAACGGGGCATTAAACACACACCTATaGCCCTTTGGATTTCCACAC +
Preference number: 5 (lower is better)
Translates to: SLKWFIVQCWKHKCGNGALNTHL*PFGFPH
Trigger: GTGTGGAAATCCAAAGGGCAATAGGTGTGTGTTTAA...TGCCCCGTTCCCACACTTGTGTTTCCAGCACTGAACAATAAACCATTTCAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCTTACAACAGAATCATTCTTaGAAGAAGGTCCCACTCCTC +
Preference number: 5 (lower is better)
Translates to: QQVLLCQRGDSLSKGISLQQNHS*KKVPLL
Trigger: GAGGAGTGGGACCTTCTTCAAAGAATGATTCTGTTG...TAAGGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS-3UTR CAA 90 bp CATCAACAGGTTCTTCTGTGTCAAAGAGGAGATTCCCTGAGTAAAGGCATTTCCGTGAGGGTTCCTCAGTaGTTTCTTCAGCTTATTCTT +
Preference number: 5 (lower is better)
Translates to: HQQVLLCQRGDSLSKGISVRVPQ*FLQLIL
Trigger: AAGAATAAGCTGAAGAAACAACTGAGGAACCCTCAC...GGAAATGCCTTTACTCAGGGAATCTCCTCTTTGACACAGAAGAACCTGTTGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CAA 90 bp GCCAGCTCCCACACAGCAGGACTCCGGCCCTCAAAGAGGGCAGGGTaGTGCAGGTTCCCCTCTGCACTCATGACTCCCTGCACGCCGGTG +
Preference number: 6 (lower is better)
Translates to: ASSHTAGLRPSKRAG*CRFPSALMTPCTPV
Trigger: CACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGAGGGCCGGAGTCCTGCTGTGTGGGAGCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 72 bp AGAGGGCAGGGTTGTGCAGGTTCCCCTCTGCACTCATaGCTCCCTGCACGCCGGTGTCCTGGATGCACCGCT +
Preference number: 6 (lower is better)
Translates to: RGQGCAGSPLHS*LPARRCPGCTA
Trigger: AGCGGTGCATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 72 bp GGGTTGTGCAGGTTCCCCTCTGCACTCATGACTCCCTaGACGCCGGTGTCCTGGATGCACCGCTCCACATCC +
Preference number: 6 (lower is better)
Translates to: GLCRFPSALMTP*TPVSWMHRSTS
Trigger: GGATGTGGAGCGGTGCATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCACAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 72 bp TGGCGGCGGCTCAGAAGTCTCCAAGCTAGCTCACTCTaGTCCACCATGGGTGCCACCACATGTCGGGCACCC +
Preference number: 6 (lower is better)
Translates to: WRRLRSLQASSL*STMGATTCRAP
Trigger: GGGTGCCCGACATGTGGTGGCACCCATGGTGGACCAGAGTGAGCTAGCTTGGAGACTTCTGAGCCGCCGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000129955.2
ENSMUST00000143139.8
ENSMUST00000167023.8
CDS GCA 72 bp GCCCTCAAAGAGGGCAGGGTTGTGCAGGTTCCCCTCTaGACTCATGACTCCCTGCACGCCGGTGTCCTGGAT +
Preference number: 6 (lower is better)
Translates to: ALKEGRVVQVPL*THDSLHAGVLD
Trigger: ATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGGGAACCTGCACAACCCTGCCCTCTTTGAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 72 bp CCCTCTGCACTCATGACTCCCTGCACGCCGGTGTCCTaGATGCACCGCTCCACATCCTGCAGGCATTGGATG +
Preference number: 6 (lower is better)
Translates to: PSALMTPCTPVS*MHRSTSCRHWM
Trigger: CATCCAATGCCTGCAGGATGTGGAGCGGTGCATCCAGGACACCGGCGTGCAGGGAGTCATGAGTGCAGAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CAA 72 bp TCCAGAGCCCGCTTGCTTCGACCACCACTATTCTCCTaGCTCCCTTCCCTAGGTCCTGGCCGGATGTACGGC +
Preference number: 6 (lower is better)
Translates to: SRARLLRPPLFS*LPSLGPGRMYG
Trigger: GCCGTACATCCGGCCAGGACCTAGGGAAGGGAGCAAGGAGAATAGTGGTGGTCGAAGCAAGCGGGCTCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 72 bp CAAACACAGGGATTCCCACAGCCTTCCGAACGGCCTTaGTGTGTTCCCAGGAGGCTGTTCCTGCCATGGGCC +
Preference number: 6 (lower is better)
Translates to: QTQGFPQPSERP*CVPRRLFLPWA
Trigger: GGCCCATGGCAGGAACAGCCTCCTGGGAACACATCAAGGCCGTTCGGAAGGCTGTGGGAATCCCTGTGTTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 72 bp GGCCTCACTCCTTCTTGCTGCCTAGACATGTCCTCCTaGCACCGAAGCTTTAGCGCCTGGCTCACAGCAGCC +
Preference number: 6 (lower is better)
Translates to: GLTPSCCLDMSS*HRSFSAWLTAA
Trigger: GGCTGCTGTGAGCCAGGCGCTAAAGCTTCGGTGTCAGGAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167023.8
CDS GCA 72 bp TGCACGCCGGTGTCCTGGATGCACCGCTCCACATCCTaGAGGCATTGGATGTTCCCATTGGCAAACACAGGG +
Preference number: 6 (lower is better)
Translates to: CTPVSWMHRSTS*RHWMFPLANTG
Trigger: CCCTGTGTTTGCCAATGGGAACATCCAATGCCTGCAGGATGTGGAGCGGTGCATCCAGGACACCGGCGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 72 bp AGATGGGCCCGGACATACGATAGTGGACAAGGGTGTTaGCGCACAATGTCCAGGTACTCCTCGGCCAGCTCC +
Preference number: 6 (lower is better)
Translates to: RWARTYDSGQGC*RTMSRYSSASS
Trigger: GGAGCTGGCCGAGGAGTACCTGGACATTGTGCGGCAACACCCTTGTCCACTATCGTATGTCCGGGCCCATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CAA 72 bp GCTAGGAGAGCCGCCTGGACAAACACCTCTGGGTCATaGGCACAGAACTGCACAATGAGAGGCCTGTCCTCG +
Preference number: 6 (lower is better)
Translates to: ARRAAWTNTSGS*AQNCTMRGLSS
Trigger: CGAGGACAGGCCTCTCATTGTGCAGTTCTGTGCCAATGACCCAGAGGTGTTTGTCCAGGCGGCTCTCCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000129955.2
ENSMUST00000167023.8
CDS CAA 72 bp AGGCTAGGGCACTACCCACGACTTCAGAGAAACCACTaGGTGTCACAGGCCTCACCTGCTGGGCTTCCTGCA +
Preference number: 6 (lower is better)
Translates to: RLGHYPRLQRNH*VSQASPAGLPA
Trigger: TGCAGGAAGCCCAGCAGGTGAGGCCTGTGACACCAAGTGGTTTCTCTGAAGTCGTGGGTAGTGCCCTAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 72 bp CTAGGTCCTGGCCGGATGTACGGCTGGCAGATCCAATaGAAAGCAGGTAAGTTGTCAGCTGGCCTCACTCCT +
Preference number: 6 (lower is better)
Translates to: LGPGRMYGWQIQ*KAGKLSAGLTP
Trigger: AGGAGTGAGGCCAGCTGACAACTTACCTGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCCAGGACCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 72 bp ACCACCACTATTCTCCTTGCTCCCTTCCCTAGGTCCTaGCCGGATGTACGGCTGGCAGATCCAATGGAAAGC +
Preference number: 6 (lower is better)
Translates to: TTTILLAPFPRS*PDVRLADPMES
Trigger: GCTTTCCATTGGATCTGCCAGCCGTACATCCGGCCAGGACCTAGGGAAGGGAGCAAGGAGAATAGTGGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CAA 72 bp GGTGTCCTGGATGCACCGCTCCACATCCTGCAGGCATaGGATGTTCCCATTGGCAAACACAGGGATTCCCAC +
Preference number: 6 (lower is better)
Translates to: GVLDAPLHILQA*DVPIGKHRDSH
Trigger: GTGGGAATCCCTGTGTTTGCCAATGGGAACATCCAATGCCTGCAGGATGTGGAGCGGTGCATCCAGGACACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CCA 72 bp TTGCTCCCTTCCCTAGGTCCTGGCCGGATGTACGGCTaGCAGATCCAATGGAAAGCAGGTAAGTTGTCAGCT +
Preference number: 6 (lower is better)
Translates to: LLPSLGPGRMYG*QIQWKAGKLSA
Trigger: AGCTGACAACTTACCTGCTTTCCATTGGATCTGCCAGCCGTACATCCGGCCAGGACCTAGGGAAGGGAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 72 bp GCAGGTAAGTTGTCAGCTGGCCTCACTCCTTCTTGCTaGCTAGACATGTCCTCCTGTAAAAGCCCAAGGCCT +
Preference number: 6 (lower is better)
Translates to: AGKLSAGLTPSC*LDMSSCKSPRP
Trigger: AGGCCTTGGGCTTTTACAGGAGGACATGTCTAGGCAGCAAGAAGGAGTGAGGCCAGCTGACAACTTACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
CDS CCA 72 bp TGTACCTGTAGCGTGTGGTGCCACAGTTTGAAGAGATaGGCCCGGACATACGATAGTGGACAAGGGTGTTGC +
Preference number: 6 (lower is better)
Translates to: CTCSVWCHSLKR*ARTYDSGQGCC
Trigger: GCAACACCCTTGTCCACTATCGTATGTCCGGGCCCATCTCTTCAAACTGTGGCACCACACGCTACAGGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 72 bp GTTGCTGATGTACCTGTAGCGTGTGGTGCCACAGTTTaGAGAGATGGGCCCGGACATACGATAGTGGACAAG +
Preference number: 6 (lower is better)
Translates to: VADVPVACGATV*RDGPGHTIVDK
Trigger: CTTGTCCACTATCGTATGTCCGGGCCCATCTCTTCAAACTGTGGCACCACACGCTACAGGTACATCAGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 72 bp AAAGCAATCCATGACCTGGGCAATCTGCTGTCTCTCTaGAAGCTCGCTTCTTGCAGCAGCCACGGCACAGAT +
Preference number: 6 (lower is better)
Translates to: KAIHDLGNLLSL*KLASCSSHGTD
Trigger: ATCTGTGCCGTGGCTGCTGCAAGAAGCGAGCTTTCAGAGAGACAGCAGATTGCCCAGGTCATGGATTGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 72 bp GTTTCTTCAGCTTATTCTTGGACAAGCCCTCCATGCTaGCTTCTTCTTCCTCCAGAGCCCGCTTGCTTCGAC +
Preference number: 6 (lower is better)
Translates to: VSSAYSWTSPPC*LLLPPEPACFD
Trigger: GTCGAAGCAAGCGGGCTCTGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS GCA 72 bp GTTGTTTCTTCAGCTTATTCTTGGACAAGCCCTCCATaGTGCCTTCTTCTTCCTCCAGAGCCCGCTTGCTTC +
Preference number: 6 (lower is better)
Translates to: VVSSAYSWTSPP*CLLLPPEPACF
Trigger: GAAGCAAGCGGGCTCTGGAGGAAGAAGAAGGCAGCATGGAGGGCTTGTCCAAGAATAAGCTGAAGAAACAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CAA 72 bp CCAGCCTTCTCCAGCATCTGGGCGTACCTCACTGTCTaGTCAATTTCTGGGAAGACACGAATTTTGCACGTG +
Preference number: 6 (lower is better)
Translates to: PAFSSIWAYLTV*SISGKTRILHV
Trigger: CACGTGCAAAATTCGTGTCTTCCCAGAAATTGACAAGACAGTGAGGTACGCCCAGATGCTGGAGAAGGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000143139.8
ENSMUST00000167023.8
CDS CCA 72 bp AAAAGCACCATAGTGACCTCTCTTGGCTATCATCTGTaGGCAGCCCAAGTTCAGGTCAATGGCATCACAGTA +
Preference number: 6 (lower is better)
Translates to: KSTIVTSLGYHL*AAQVQVNGITV
Trigger: TACTGTGATGCCATTGACCTGAACTTGGGCTGCCCACAGATGATAGCCAAGAGAGGTCACTATGGTGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000129955.2
ENSMUST00000143139.8
ENSMUST00000167023.8
CDS CCA 72 bp GCCACGGCACAGATTAAACACACACCTATTGCCCTTTaGATTTCCACACTGGTCACACTTGGCATATTTGGG +
Preference number: 6 (lower is better)
Translates to: ATAQIKHTPIAL*ISTLVTLGIFG
Trigger: CCCAAATATGCCAAGTGTGACCAGTGTGGAAATCCAAAGGGCAATAGGTGTGTGTTTAATCTGTGCCGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS CAA 72 bp AACAGAGAGTCGCTCATGAGCCAACAGAATCATTCTTaGAAGAAGGTCCCACTCCTCCTGCAGAAAAGCACC +
Preference number: 6 (lower is better)
Translates to: NRESLMSQQNHS*KKVPLLLQKST
Trigger: GGTGCTTTTCTGCAGGAGGAGTGGGACCTTCTTCAAAGAATGATTCTGTTGGCTCATGAGCGACTCTCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000129955.2
ENSMUST00000143139.8
ENSMUST00000167023.8
CDS CAA 72 bp CACCTATTGCCCTTTGGATTTCCACACTGGTCACACTaGGCATATTTGGGTTTCAGGGAAGGGTCAAAGGTT +
Preference number: 6 (lower is better)
Translates to: HLLPFGFPHWSH*AYLGFREGSKV
Trigger: AACCTTTGACCCTTCCCTGAAACCCAAATATGCCAAGTGTGACCAGTGTGGAAATCCAAAGGGCAATAGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8
CDS TCA 72 bp TCTTGTCAATTTCTGGGAAGACACGAATTTTGCACGTaGCAGGAACAGAGAGTCGCTCATGAGCCAACAGAA +
Preference number: 6 (lower is better)
Translates to: SCQFLGRHEFCT*QEQRVAHEPTE
Trigger: TTCTGTTGGCTCATGAGCGACTCTCTGTTCCTGTCACGTGCAAAATTCGTGTCTTCCCAGAAATTGACAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000129955.2
ENSMUST00000143139.8
ENSMUST00000167023.8
CDS CCA 72 bp ACCTATTGCCCTTTGGATTTCCACACTGGTCACACTTaGCATATTTGGGTTTCAGGGAAGGGTCAAAGGTTT +
Preference number: 6 (lower is better)
Translates to: TYCPLDFHTGHT*HIWVSGKGQRF
Trigger: AAACCTTTGACCCTTCCCTGAAACCCAAATATGCCAAGTGTGACCAGTGTGGAAATCCAAAGGGCAATAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026151.11
ENSMUST00000106133.8
ENSMUST00000106135.8
ENSMUST00000167023.8