Pregenerated sensors for DUPD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063821Ensembl transcript IDs: ENSMUST00000073870.7, ENSMUST00000224735.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCAGGGTGCCAGGGTCTCTaGTCCTCTCTGAGGAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: RRQRASSLLRPAFGFTVSGCQGL*SSLRRP Trigger: GGGCCTCCTCAGAGAGGATCAGAGACCCTGGCACCC...TGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| 3UTR-3UTR CCA 90 bp | TCCAACTTAAAGACAGGAGATTGTGGAGAGCGGTACCTTTTCCTTACCCAGATCTTCAGCCTTCTGCTCTaGGTGCCAGGGTCTCTGATC | + |
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Preference number: 2 (lower is better) Translates to: SNLKTGDCGERYLFLTQIFSLLL*VPGSLI Trigger: GATCAGAGACCCTGGCACCCAGAGCAGAAGGCTGAA...GATCTGGGTAAGGAAAAGGTACCGCTCTCCACAATCTCCTGTCTTTAAGTTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| 3UTR-3UTR CAA 90 bp | GGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCATCCCACCAAAGCCTCCTaGCAGACGTGCTTCAGCCTT | + |
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Preference number: 3 (lower is better) Translates to: GDSGHPPCCAQPLVSLSHPTKAS*QTCFSL Trigger: AAGGCTGAAGCACGTCTGCAAGGAGGCTTTGGTGGG...ATGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| 3UTR GCA 72 bp | TTCACTGTCTCATCTCCCTGCCCACCAAAGCCTCCTTaGAGACGTGCTTCAGCCTTCTGCTCTGGGTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: FTVSSPCPPKPP*RRASAFCSGCQ Trigger: CTGGCACCCAGAGCAGAAGGCTGAAGCACGTCTGCAAGGAGGCTTTGGTGGGCAGGGAGATGAGACAGTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| 3UTR CCA 72 bp | TACCTTTTCCTTACCCAGATCCCCCTGCAGCTGACTTaGCCTACCATGAGGCAAAGAACTAGACTGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: YLFLTQIPLQLT*PTMRQRTRLEE Trigger: CTCCTCCAGTCTAGTTCTTTGCCTCATGGTAGGCCAAGTCAGCTGCAGGGGGATCTGGGTAAGGAAAAGGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR GCA 90 bp | AGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCAACATTCCAGCGGCCGTaGGCCGCGTTCAGCACGTGC | + |
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Preference number: 4 (lower is better) Translates to: RRQRASSLLRPAFGFTVSTFQRP*AAFSTC Trigger: GCACGTGCTGAACGCGGCGCACGGCCGCTGGAATGT...TGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR TCA 90 bp | TCTCCCTGCCCACCAAAGCCTCCTTGCAGACGTGCTTCAGCCTTCTGCTCTGGGCGTTCAGCACGTGCGTaGAACCCGCCTTCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SPCPPKPPCRRASAFCSGRSARA*NPPSAA Trigger: GGCTGCAGAAGGCGGGTTTCACGCACGTGCTGAACG...CCCAGAGCAGAAGGCTGAAGCACGTCTGCAAGGAGGCTTTGGTGGGCAGGGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR GCA 90 bp | AGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCAGCCGCGTTCAGCACGTaGGTGAAACCCGCCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: RRQRASSLLRPAFGFTVSAAFST*VKPAFC Trigger: GCAGAAGGCGGGTTTCACGCACGTGCTGAACGCGGC...TGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR GCA 90 bp | TGGAGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCCAGCTCTCGGAGTTaGTTCAAGAAGCCCCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: WRRQRASSLLRPAFGFTVSSSRS*FKKPRL Trigger: CAACCGGGGCTTCTTGAAGCAACTCCGAGAGCTGGA...GACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR GCA 90 bp | AGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCACGCTGCTTCACCAGCTaGTTGTCCAGCTCTCGGAGT | + |
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Preference number: 4 (lower is better) Translates to: RRQRASSLLRPAFGFTVSRCFTS*LSSSRS Trigger: ACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCG...TGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CCA 90 bp | TCTCCCTGCCCACCAAAGCCTCCTTGCAGACGTGCTTCAGCCTTCTGCTCTGGGGCCTCATCACCAATGTaGAGCCGAGGCCAGACCTCA | + |
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Preference number: 4 (lower is better) Translates to: SPCPPKPPCRRASAFCSGASSPM*SRGQTS Trigger: TGAGGTCTGGCCTCGGCTCCACATTGGTGATGAGGC...CCCAGAGCAGAAGGCTGAAGCACGTCTGCAAGGAGGCTTTGGTGGGCAGGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CCA 90 bp | TGGAGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCACCGACTTCGGCCCATaGCACAGTGAACCAGGATCT | + |
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Preference number: 4 (lower is better) Translates to: WRRQRASSLLRPAFGFTVTDFGP*HSEPGS Trigger: AGATCCTGGTTCACTGTGCCATGGGCCGAAGTCGGT...GACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR GCA 90 bp | TTCCTTACCCAGATCCCCCTGCAGCTGACTTGGCCTACCATGAGGCAAAGAACTCCGGCCTGTCGCCGCTaGTTCACCAGCTGCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: FLTQIPLQLTWPTMRQRTPACRR*FTSCLS Trigger: GGACAAGCAGCTGGTGAAGCAGCGGCGACAGGCCGG...AGTTCTTTGCCTCATGGTAGGCCAAGTCAGCTGCAGGGGGATCTGGGTAAGGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CCA 90 bp | GTCTCATCTCCCTGCCCACCAAAGCCTCCTTGCAGACGTGCTTCAGCCTTCTGCTCAAGAAGCCCCGGTTaGGCAGGACACAGCGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VSSPCPPKPPCRRASAFCSRSPG*AGHSGS Trigger: AGAACCGCTGTGTCCTGCCCAACCGGGGCTTCTTGA...GCAGAAGGCTGAAGCACGTCTGCAAGGAGGCTTTGGTGGGCAGGGAGATGAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR TCA 90 bp | GTCTCATCTCCCTGCCCACCAAAGCCTCCTTGCAGACGTGCTTCAGCCTTCTGCGAGGCCAGACCTCATTaGCGTGTGTATACTGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: VSSPCPPKPPCRRASAFCEARPH*RVYTGD Trigger: GTCCCCAGTATACACACGTCAATGAGGTCTGGCCTC...GCAGAAGGCTGAAGCACGTCTGCAAGGAGGCTTTGGTGGGCAGGGAGATGAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR GCA 90 bp | AGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCAGTGTATACTGGGGACTaGCCTTCCAGAAGAGACGCT | + |
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Preference number: 4 (lower is better) Translates to: RRQRASSLLRPAFGFTVSVYTGD*PSRRDA Trigger: AGCGTCTCTTCTGGAAGGGCAGTCCCCAGTATACAC...TGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR TCA 90 bp | AGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCAAGAGGTGGGCATGTTTaGCGCTTGTCTTTGTATCTC | + |
|
Preference number: 4 (lower is better) Translates to: RRQRASSLLRPAFGFTVSRGGHV*RLSLYL Trigger: GAGATACAAAGACAAGCGTCAAACATGCCCACCTCT...TGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR TCA 90 bp | TTCCTTACCCAGATCCCCCTGCAGCTGACTTGGCCTACCATGAGGCAAAGAACTCGGCCCATGGCACAGTaGACCAGGATCTTACTGTGG | + |
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Preference number: 4 (lower is better) Translates to: FLTQIPLQLTWPTMRQRTRPMAQ*TRILLW Trigger: CCACAGTAAGATCCTGGTTCACTGTGCCATGGGCCG...AGTTCTTTGCCTCATGGTAGGCCAAGTCAGCTGCAGGGGGATCTGGGTAAGGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR TCA 90 bp | AGGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCATTCTTAGCCACTTGTTaGATGGCGTCCACCAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: RRQRASSLLRPAFGFTVSFLATC*MASTKV Trigger: GACTTTGGTGGACGCCATTCAACAAGTGGCTAAGAA...TGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR TCA 90 bp | GAGCGGTACCTTTTCCTTACCCAGATCCCCCTGCAGCTGACTTGGCCTACCATGAGTAGAAAAAGATGCTaGGGTCGAAGGTGGGCACGT | + |
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Preference number: 4 (lower is better) Translates to: ERYLFLTQIPLQLTWPTMSRKRC*GRRWAR Trigger: ACGTGCCCACCTTCGACCTCAGCATCTTTTTCTACT...CATGGTAGGCCAAGTCAGCTGCAGGGGGATCTGGGTAAGGAAAAGGTACCGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CCA 90 bp | TTCCTTACCCAGATCCCCCTGCAGCTGACTTGGCCTACCATGAGGCAAAGAACTCGCCGTGGTACTCGATaGCCATGTCTCGGTAGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: FLTQIPLQLTWPTMRQRTRRGTR*PCLGSS Trigger: ACTACTACCGAGACATGGCCATCGAGTACCACGGCG...AGTTCTTTGCCTCATGGTAGGCCAAGTCAGCTGCAGGGGGATCTGGGTAAGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CCA 90 bp | GCTTCCAACTTAAAGACAGGAGATTGTGGAGAGCGGTACCTTTTCCTTACCCAGCTCTCAGCACAGAGGTaGGCATGTTTGACGCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ASNLKTGDCGERYLFLTQLSAQR*ACLTLV Trigger: GACAAGCGTCAAACATGCCCACCTCTGTGCTGAGAG...CTGGGTAAGGAAAAGGTACCGCTCTCCACAATCTCCTGTCTTTAAGTTGGAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CCA 90 bp | GCTTCCAACTTAAAGACAGGAGATTGTGGAGAGCGGTACCTTTTCCTTACCCAGTTGACGTGTGTATACTaGGGACTGCCCTTCCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ASNLKTGDCGERYLFLTQLTCVY*GLPFQK Trigger: CTTCTGGAAGGGCAGTCCCCAGTATACACACGTCAA...CTGGGTAAGGAAAAGGTACCGCTCTCCACAATCTCCTGTCTTTAAGTTGGAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CCA 90 bp | GGTCGAAGGTGGGCACGTCGTCGGCCTCGACGCCGTGGTACTCGATaGCCATGTCTCGGTAGTAGTCCGGCCCGGTGTCCACATTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: GRRWARRRPRRRGTR*PCLGSSPARCPHSS Trigger: GCTGGAATGTGGACACCGGGCCGGACTACTACCGAGACATGGCCATCGAGTACCACGGCGTCGAGGCCGACGACGTGCCCACCTTCGACC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073870.7 ENSMUST00000224735.2 |
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| CDS GCA 90 bp | GCCTGTCGCCGCTGCTTCACCAGCTGCTTGTCCAGCTCTCGGAGTTaGTTCAAGAAGCCCCGGTTGGGCAGGACACAGCGGTTCTTAGCC | + |
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Preference number: 5 (lower is better) Translates to: ACRRCFTSCLSSSRS*FKKPRLGRTQRFLA Trigger: GGCTAAGAACCGCTGTGTCCTGCCCAACCGGGGCTTCTTGAAGCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCGGCGACAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CAA 90 bp | TCTCCCTGCCCACCAAAGCCTCCTTGCAGACGTGCTTCAGCCTTCTGCTCTGGGTTCAAGAAGCCCCGGTaGGGCAGGACACAGCGGTTC | + |
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Preference number: 5 (lower is better) Translates to: SPCPPKPPCRRASAFCSGFKKPR*GRTQRF Trigger: GAACCGCTGTGTCCTGCCCAACCGGGGCTTCTTGAA...CCCAGAGCAGAAGGCTGAAGCACGTCTGCAAGGAGGCTTTGGTGGGCAGGGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CAA 90 bp | GGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCATTGCTTCACCAGCTGCTaGTCCAGCTCTCGGAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: GDSGHPPCCAQPLVSLSHCFTSC*SSSRSC Trigger: GCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCA...ATGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CAA 90 bp | GGAGACAGCGGGCATCCTCCCTGCTGCGCCCAGCCTTTGGTTTCACTGTCTCATGCGGTTCTTAGCCACTaGTTGAATGGCGTCCACCAA | + |
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Preference number: 5 (lower is better) Translates to: GDSGHPPCCAQPLVSLSHAVLSH*LNGVHQ Trigger: TTGGTGGACGCCATTCAACAAGTGGCTAAGAACCGC...ATGAGACAGTGAAACCAAAGGCTGGGCGCAGCAGGGAGGATGCCCGCTGTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS GCA 90 bp | TGCCAGGCCCCTTCCATTAAGAGGGAGTTTGTGGTCATCTCGGAGTaGCGAGTCGATGAAGGCCGCAGCGGAGTAGAAAAAGATGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: CQAPSIKREFVVISE*RVDEGRSGVEKDAE Trigger: CTCAGCATCTTTTTCTACTCCGCTGCGGCCTTCATCGACTCGGCACTCCGAGATGACCACAAACTCCCTCTTAATGGAAGGGGCCTGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000224735.2 |
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| CDS-3UTR CAA 90 bp | TTCCTTACCCAGATCCCCCTGCAGCTGACTTGGCCTACCATGAGGCAAAGAACTCGAGGCCAGACCTCATaGACGTGTGTATACTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: FLTQIPLQLTWPTMRQRTRGQTS*TCVYWG Trigger: TCCCCAGTATACACACGTCAATGAGGTCTGGCCTCG...AGTTCTTTGCCTCATGGTAGGCCAAGTCAGCTGCAGGGGGATCTGGGTAAGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CAA 90 bp | GAGCGGTACCTTTTCCTTACCCAGATCCCCCTGCAGCTGACTTGGCCTACCATGGTTCTTAGCCACTTGTaGAATGGCGTCCACCAAAGT | + |
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Preference number: 5 (lower is better) Translates to: ERYLFLTQIPLQLTWPTMVLSHL*NGVHQS Trigger: ACTTTGGTGGACGCCATTCAACAAGTGGCTAAGAAC...CATGGTAGGCCAAGTCAGCTGCAGGGGGATCTGGGTAAGGAAAAGGTACCGCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS-3UTR CAA 90 bp | GCTTCCAACTTAAAGACAGGAGATTGTGGAGAGCGGTACCTTTTCCTTACCCAGGTCCAGCTCTCGGAGTaGCTTCAAGAAGCCCCGGTT | + |
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Preference number: 5 (lower is better) Translates to: ASNLKTGDCGERYLFLTQVQLSE*LQEAPV Trigger: AACCGGGGCTTCTTGAAGCAACTCCGAGAGCTGGAC...CTGGGTAAGGAAAAGGTACCGCTCTCCACAATCTCCTGTCTTTAAGTTGGAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS GCA 72 bp | CCTAGGTCACTGTCCCCTGGCCCGGCCTGTCGCCGCTaGTTCACCAGCTGCTTGTCCAGCTCTCGGAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: PRSLSPGPACRR*FTSCLSSSRSC Trigger: GCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCGGCGACAGGCCGGGCCAGGGGACAGTGACCTAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CCA 72 bp | TGGGCACGTCGTCGGCCTCGACGCCGTGGTACTCGATaGCCATGTCTCGGTAGTAGTCCGGCCCGGTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: WARRRPRRRGTR*PCLGSSPARCP Trigger: TGGACACCGGGCCGGACTACTACCGAGACATGGCCATCGAGTACCACGGCGTCGAGGCCGACGACGTGCCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073870.7 ENSMUST00000224735.2 |
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| CDS CAA 72 bp | CCTGGCCCGGCCTGTCGCCGCTGCTTCACCAGCTGCTaGTCCAGCTCTCGGAGTTGCTTCAAGAAGCCCCGG | + |
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Preference number: 6 (lower is better) Translates to: PGPACRRCFTSC*SSSRSCFKKPR Trigger: CCGGGGCTTCTTGAAGCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCGGCGACAGGCCGGGCCAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS GCA 72 bp | TCCCCTGGCCCGGCCTGTCGCCGCTGCTTCACCAGCTaGTTGTCCAGCTCTCGGAGTTGCTTCAAGAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: SPGPACRRCFTS*LSSSRSCFKKP Trigger: GGGCTTCTTGAAGCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCGGCGACAGGCCGGGCCAGGGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CCA 72 bp | AACCCGCCTTCTGCAGCCCATAGCGGTCCAGCGCCGTaGCCTCATCACCAATGTGGAGCCGAGGCCAGACCT | + |
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Preference number: 6 (lower is better) Translates to: NPPSAAHSGPAP*PHHQCGAEARP Trigger: AGGTCTGGCCTCGGCTCCACATTGGTGATGAGGCCACGGCGCTGGACCGCTATGGGCTGCAGAAGGCGGGTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073870.7 ENSMUST00000224735.2 |
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| CDS CAA 90 bp | GGCCTGTCGCCGCTGCTTCACCAGCTGCTTGTCCAGCTCTCGGAGTaGCTTCAAGAAGCCCCGGTTGGGCAGGACACAGCGGTTCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: GLSPLLHQLLVQLSE*LQEAPVGQDTAVLS Trigger: GCTAAGAACCGCTGTGTCCTGCCCAACCGGGGCTTCTTGAAGCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCGGCGACAGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS GCA 72 bp | CGCTGCTTCACCAGCTGCTTGTCCAGCTCTCGGAGTTaGTTCAAGAAGCCCCGGTTGGGCAGGACACAGCGG | + |
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Preference number: 6 (lower is better) Translates to: RCFTSCLSSSRS*FKKPRLGRTQR Trigger: CCGCTGTGTCCTGCCCAACCGGGGCTTCTTGAAGCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CAA 72 bp | CCGCTGCTTCACCAGCTGCTTGTCCAGCTCTCGGAGTaGCTTCAAGAAGCCCCGGTTGGGCAGGACACAGCG | + |
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Preference number: 6 (lower is better) Translates to: PLLHQLLVQLSE*LQEAPVGQDTA Trigger: CGCTGTGTCCTGCCCAACCGGGGCTTCTTGAAGCAACTCCGAGAGCTGGACAAGCAGCTGGTGAAGCAGCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CCA 72 bp | AGGCCTGCCAGGCCCCTTCCATTAAGAGGGAGTTTGTaGTCATCTCGGAGTGCCGAGTCGATGAAGGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: RPARPLPLRGSL*SSRSAESMKAA Trigger: TGCGGCCTTCATCGACTCGGCACTCCGAGATGACCACAAACTCCCTCTTAATGGAAGGGGCCTGGCAGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224735.2 |
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| CDS CAA 90 bp | TTGTCTTCCTCAAGGCCTGCCAGGCCCCTTCCATTAAGAGGGAGTTaGTGGTCATCTCGGAGTGCCGAGTCGATGAAGGCCGCAGCGGAG | + |
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Preference number: 6 (lower is better) Translates to: LSSSRPARPLPLRGS*WSSRSAESMKAAAE Trigger: CTCCGCTGCGGCCTTCATCGACTCGGCACTCCGAGATGACCACAAACTCCCTCTTAATGGAAGGGGCCTGGCAGGCCTTGAGGAAGACAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224735.2 |
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| CDS TCA 72 bp | ACCAGAGTTGCTGACCGACTTCGGCCCATGGCACAGTaGACCAGGATCTTACTGTGGTCATCTCGGAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: TRVADRLRPMAQ*TRILLWSSRSA Trigger: GGCACTCCGAGATGACCACAGTAAGATCCTGGTTCACTGTGCCATGGGCCGAAGTCGGTCAGCAACTCTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CAA 72 bp | GCCTCATCACCAATGTGGAGCCGAGGCCAGACCTCATaGACGTGTGTATACTGGGGACTGCCCTTCCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: ASSPMWSRGQTS*TCVYWGLPFQK Trigger: CTTCTGGAAGGGCAGTCCCCAGTATACACACGTCAATGAGGTCTGGCCTCGGCTCCACATTGGTGATGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073870.7 ENSMUST00000224735.2 |
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| CDS TCA 72 bp | CCTCATCACCAATGTGGAGCCGAGGCCAGACCTCATTaGCGTGTGTATACTGGGGACTGCCCTTCCAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PHHQCGAEARPH*RVYTGDCPSRR Trigger: TCTTCTGGAAGGGCAGTCCCCAGTATACACACGTCAATGAGGTCTGGCCTCGGCTCCACATTGGTGATGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073870.7 ENSMUST00000224735.2 |
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| CDS CCA 72 bp | TCCTCCTCCCGCACGGACAGCCTCTCAGCACAGAGGTaGGCATGTTTGACGCTTGTCTTTGTATCTCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SSSRTDSLSAQR*ACLTLVFVSPD Trigger: ATCAGGAGATACAAAGACAAGCGTCAAACATGCCCACCTCTGTGCTGAGAGGCTGTCCGTGCGGGAGGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073870.7 ENSMUST00000224735.2 |
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| CDS CAA 72 bp | GCCCCGGTTGGGCAGGACACAGCGGTTCTTAGCCACTaGTTGAATGGCGTCCACCAAAGTCATGTTCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: APVGQDTAVLSH*LNGVHQSHVLV Trigger: CACAAGAACATGACTTTGGTGGACGCCATTCAACAAGTGGCTAAGAACCGCTGTGTCCTGCCCAACCGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS TCA 72 bp | CGGTTGGGCAGGACACAGCGGTTCTTAGCCACTTGTTaGATGGCGTCCACCAAAGTCATGTTCTTGTGGATC | + |
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Preference number: 6 (lower is better) Translates to: RLGRTQRFLATC*MASTKVMFLWI Trigger: GATCCACAAGAACATGACTTTGGTGGACGCCATTCAACAAGTGGCTAAGAACCGCTGTGTCCTGCCCAACCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS GCA 72 bp | ACAGTGAACCAGGATCTTACTGTGGTCATCTCGGAGTaGCGAGTCGATGAAGGCCGCAGCGGAGTAGAAAAA | + |
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Preference number: 6 (lower is better) Translates to: TVNQDLTVVISE*RVDEGRSGVEK Trigger: TTTTTCTACTCCGCTGCGGCCTTCATCGACTCGGCACTCCGAGATGACCACAGTAAGATCCTGGTTCACTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CAA 72 bp | CCGGTTGGGCAGGACACAGCGGTTCTTAGCCACTTGTaGAATGGCGTCCACCAAAGTCATGTTCTTGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: PVGQDTAVLSHL*NGVHQSHVLVD Trigger: ATCCACAAGAACATGACTTTGGTGGACGCCATTCAACAAGTGGCTAAGAACCGCTGTGTCCTGCCCAACCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CAA 90 bp | CAAGAAGCCCCGGTTGGGCAGGACACAGCGGTTCTTAGCCACTTGTaGAATGGCGTCCACCAAAGTCATGTTCTTGTGGATCATCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: QEAPVGQDTAVLSHL*NGVHQSHVLVDHQV Trigger: TACCTGATGATCCACAAGAACATGACTTTGGTGGACGCCATTCAACAAGTGGCTAAGAACCGCTGTGTCCTGCCCAACCGGGGCTTCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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| CDS CAA 90 bp | CTTCAAGAAGCCCCGGTTGGGCAGGACACAGCGGTTCTTAGCCACTaGTTGAATGGCGTCCACCAAAGTCATGTTCTTGTGGATCATCAG | + |
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Preference number: 6 (lower is better) Translates to: LQEAPVGQDTAVLSH*LNGVHQSHVLVDHQ Trigger: CTGATGATCCACAAGAACATGACTTTGGTGGACGCCATTCAACAAGTGGCTAAGAACCGCTGTGTCCTGCCCAACCGGGGCTTCTTGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073870.7 |
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