Pregenerated sensors for DTWD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024505Ensembl transcript IDs: ENSMUST00000025383.10, ENSMUST00000163590.9, ENSMUST00000237137.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCATTGGCTTGGGATACAATCCGTTTCTCAGAAGATATTCCTTGCTaGGGCGAATCTGAGCGCCATGCTGAAGCTGGAAAGAACACAGAG | + |
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Preference number: 1 (lower is better) Translates to: ALAWDTIRFSEDIPC*GESERHAEAGKNTE Trigger: CTCTGTGTTCTTTCCAGCTTCAGCATGGCGCTCAGATTCGCCTCAGCAAGGAATATCTTCTGAGAAACGGATTGTATCCCAAGCCAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| 3UTR CCA 90 bp | CAGCACAAGAATGGGCCAACGATTCTTCAGAGCGAAAGCCTAGACTaGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTA | + |
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Preference number: 1 (lower is better) Translates to: QHKNGPTILQSESLD*EDVTQSCQPVTGKL Trigger: TAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTCTAGGCTTTCGCTCTGAAGAATCGTTGGCCCATTCTTGTGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR GCA 90 bp | CCCACACCCTGTAGCCATGTATCTGATGCTGTTAGGATTCACAGATaGATCAAAGTGCCAAGTATCTCAACTCTGCCATCTTTCTTCTAT | + |
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Preference number: 1 (lower is better) Translates to: PTPCSHVSDAVRIHR*IKVPSISTLPSFFY Trigger: ATAGAAGAAAGATGGCAGAGTTGAGATACTTGGCACTTTGATGCATCTGTGAATCCTAACAGCATCAGATACATGGCTACAGGGTGTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR-3UTR CCA 90 bp | AGGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCGAAGCTAGACAGAGGTaGGGCATGCTTTTCAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: RWGMLFSPELGRQKQPDLEARQR*GMLFSP Trigger: TGGGCTGAAAAGCATGCCCCACCTCTGTCTAGCTTC...GAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR TCA 90 bp | GATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAGCACCACAGGGACAGAAAGAACACAGAGCTTaGAGGGGGCGGAGCAGGGTC | + |
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Preference number: 2 (lower is better) Translates to: DVTQSCQPVTGKLAPQGQKEHRA*RGRSRV Trigger: GACCCTGCTCCGCCCCCTTCAAGCTCTGTGTTCTTT...CTGTCCCTGTGGTGCTAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| 3UTR-3UTR TCA 90 bp | GTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTGAAACGAGAGGCAGTGTaGAACTGCTTTTCACAGTCA | + |
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Preference number: 2 (lower is better) Translates to: VGHAFQPRTWEAEAARSLKREAV*NCFSQS Trigger: TGACTGTGAAAAGCAGTTTCACACTGCCTCTCGTTT...CAGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR CCA 90 bp | GTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTGAGCGAAAGCCTAGACTaGGAAGATGTAACACAGTCT | + |
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Preference number: 2 (lower is better) Translates to: VGHAFQPRTWEAEAARSLSESLD*EDVTQS Trigger: AGACTGTGTTACATCTTCCCAGTCTAGGCTTTCGCT...CAGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR TCA 90 bp | GGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTTTTCATTCACTAGGCTaGAACATTAGTTTCACGGGG | + |
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Preference number: 2 (lower is better) Translates to: GGACFSAQNLGGRSSQISFHSLG*NISFTG Trigger: CCCCGTGAAACTAATGTTTCAGCCTAGTGAATGAAA...AGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR CCA 90 bp | GGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTAAGGCACCTGTTTGTTaGTTGCATCCGAATTACATA | + |
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Preference number: 2 (lower is better) Translates to: GGACFSAQNLGGRSSQISKAPVC*LHPNYI Trigger: TATGTAATTCGGATGCAACCAACAAACAGGTGCCTT...AGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| 3UTR-3UTR TCA 90 bp | GATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAGCACCACAGGGACAGAAACGAGAGGCAGTGTaGAACTGCTTTTCACAGTCA | + |
|
Preference number: 2 (lower is better) Translates to: DVTQSCQPVTGKLAPQGQKREAV*NCFSQS Trigger: TGACTGTGAAAAGCAGTTTCACACTGCCTCTCGTTT...CTGTCCCTGTGGTGCTAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTATTCCCTTACACTACTTAATGACATAAACTGCCCTCTGTGTCACTTACTTGAAGCTAGACAGAGGTaGGGCATGCTTTTCAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: PYSLTLLNDINCPLCHLLEARQR*GMLFSP Trigger: TGGGCTGAAAAGCATGCCCCACCTCTGTCTAGCTTC...AAGTAAGTGACACAGAGGGCAGTTTATGTCATTAAGTAGTGTAAGGGAATAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR CCA 90 bp | ATCCCCCATAGAGAATGCAGGTTATTTCAAAATTATATGTCTCCACAGGAATTCTTTCAGCCCAGAACTTaGGAGGCAGAAGCAGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: IPHRECRLFQNYMSPQEFFQPRT*EAEAAR Trigger: TCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAA...GAATTCCTGTGGAGACATATAATTTTGAAATAACCTGCATTCTCTATGGGGGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR TCA 90 bp | CCCTATTCCCTTACACTACTTAATGACATAAACTGCCCTCTGTGTCACTTACTTTTTCATTCACTAGGCTaGAACATTAGTTTCACGGGG | + |
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Preference number: 2 (lower is better) Translates to: PYSLTLLNDINCPLCHLLFHSLG*NISFTG Trigger: CCCCGTGAAACTAATGTTTCAGCCTAGTGAATGAAA...AAGTAAGTGACACAGAGGGCAGTTTATGTCATTAAGTAGTGTAAGGGAATAGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR TCA 90 bp | ATCCCCCATAGAGAATGCAGGTTATTTCAAAATTATATGTCTCCACAGGAATTCCATACCTATAAACACTaGCGGGAACATGTTCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: IPHRECRLFQNYMSPQEFHTYKH*REHVPR Trigger: TCTGGGAACATGTTCCCGTCAGTGTTTATAGGTATG...GAATTCCTGTGGAGACATATAATTTTGAAATAACCTGCATTCTCTATGGGGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCATAAAAATAATCAGAAACTGGTGTGTGTTCATGCCACACACAGAGGTATTAGCGAAAGCCTAGACTaGGAAGATGTAACACAGTCT | + |
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Preference number: 2 (lower is better) Translates to: KHKNNQKLVCVHATHRGISESLD*EDVTQS Trigger: AGACTGTGTTACATCTTCCCAGTCTAGGCTTTCGCT...AATACCTCTGTGTGTGGCATGAACACACACCAGTTTCTGATTATTTTTATGCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR-3UTR TCA 90 bp | ATAATCAGAAACTGGTGTGTGTTCATGCCACACACAGAGGTATTTATCAAAATCCAAAATGAAACATCGTaGTCTTGCCAAAGTGTATGC | + |
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Preference number: 2 (lower is better) Translates to: IIRNWCVFMPHTEVFIKIQNETS*SCQSVC Trigger: GCATACACTTTGGCAAGATCACGATGTTTCATTTTG...GATTTTGATAAATACCTCTGTGTGTGGCATGAACACACACCAGTTTCTGATTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR TCA 72 bp | AGGAGAGTTATCCTTCGCCTAGGACGCATCACTCCCTaGTTGGCTGCAGCCCATGGCCGAGTAAAGGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: RRVILRLGRITP*LAAAHGRVKAE Trigger: CTCTGCCTTTACTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAGGATAACTCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR TCA 72 bp | ATACCACTTAGAACACAGGATGTTAGCGCCATCTTGTaGCGGCGAATGTGGGGGCGGCTCCCAACACATACC | + |
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Preference number: 3 (lower is better) Translates to: IPLRTQDVSAIL*RRMWGRLPTHT Trigger: GGTATGTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTAACATCCTGTGTTCTAAGTGGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR TCA 72 bp | AGGCAGTGTGAAACTGCTTTTCACAGTCAACGGAAGTaGACCATAAGGCGCTGTGGAGCAGCCCTCGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: RQCETAFHSQRK*TIRRCGAALVL Trigger: AAGGACGAGGGCTGCTCCACAGCGCCTTATGGTTCACTTCCGTTGACTGTGAAAAGCAGTTTCACACTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTGTTTGCGTTTGTTCTTaGGCATTGGCTTGGGATACA | + |
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Preference number: 3 (lower is better) Translates to: EVGHAFQPRTWEAEAARSVCVCS*ALAWDT Trigger: TGTATCCCAAGCCAATGCCAAAGAACAAACGCAAAC...AGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| 3UTR TCA 72 bp | TGGGATACAATCCGTTTCTCAGAAGATATTCCTTGCTaGGGCGAATCTGAGCGCCATGCTGAAGCTGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: WDTIRFSEDIPC*GESERHAEAGK Trigger: CTTTCCAGCTTCAGCATGGCGCTCAGATTCGCCTCAGCAAGGAATATCTTCTGAGAAACGGATTGTATCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| 3UTR CCA 72 bp | AATGGGCCAACGATTCTTCAGAGCGAAAGCCTAGACTaGGAAGATGTAACACAGTCTTGTCAGCCAGTGACA | + |
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Preference number: 3 (lower is better) Translates to: NGPTILQSESLD*EDVTQSCQPVT Trigger: TGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTCTAGGCTTTCGCTCTGAAGAATCGTTGGCCCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTATTCCCTTACACTACTTAATGACATAAACTGCCCTCTGTGTCACTTACTTGAAAGAACACAGAGCTaGAAGGGGGCGGAGCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: PYSLTLLNDINCPLCHLLERTQS*KGAEQG Trigger: ACCCTGCTCCGCCCCCTTCAAGCTCTGTGTTCTTTC...AAGTAAGTGACACAGAGGGCAGTTTATGTCATTAAGTAGTGTAAGGGAATAGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| 3UTR-3UTR CAA 90 bp | GATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAGCACCACAGGGACAGAAAGGCACCTGTTTGTaGGTTGCATCCGAATTACAT | + |
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Preference number: 3 (lower is better) Translates to: DVTQSCQPVTGKLAPQGQKGTCL*VASELH Trigger: ATGTAATTCGGATGCAACCAACAAACAGGTGCCTTT...CTGTCCCTGTGGTGCTAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| 3UTR-3UTR CAA 90 bp | ATCCCCCATAGAGAATGCAGGTTATTTCAAAATTATATGTCTCCACAGGAATTCTTTTCAGCCCAGAACTaGGGAGGCAGAAGCAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: IPHRECRLFQNYMSPQEFFSAQN*GGRSSQ Trigger: CTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAA...GAATTCCTGTGGAGACATATAATTTTGAAATAACCTGCATTCTCTATGGGGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR GCA 72 bp | GAAACTTCATCAAAAACCTCTTACCACCAGTTAGCTTaGTCAGTGAACACTGAAAGTTATGCACAGCATCCC | + |
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Preference number: 3 (lower is better) Translates to: ETSSKTSYHQLA*SVNTESYAQHP Trigger: GGGATGCTGTGCATAACTTTCAGTGTTCACTGAGCAAGCTAACTGGTGGTAAGAGGTTTTTGATGAAGTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR GCA 72 bp | TATCTGATGCTGTTAGGATTCACAGATGCATCAAAGTaGCAAGTATCTCAACTCTGCCATCTTTCTTCTATC | + |
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Preference number: 3 (lower is better) Translates to: YLMLLGFTDASK*QVSQLCHLSSI Trigger: GATAGAAGAAAGATGGCAGAGTTGAGATACTTGGCACTTTGATGCATCTGTGAATCCTAACAGCATCAGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR GCA 72 bp | ACACTGAAAGTTATGCACAGCATCCCCCATAGAGAATaGAGGTTATTTCAAAATTATATGTCTCCACAGGAA | + |
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Preference number: 3 (lower is better) Translates to: TLKVMHSIPHRE*RLFQNYMSPQE Trigger: TTCCTGTGGAGACATATAATTTTGAAATAACCTGCATTCTCTATGGGGGATGCTGTGCATAACTTTCAGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| 3UTR GCA 72 bp | TCTCCCTATTCCCTTACACTACTTAATGACATAAACTaGCCTCTGTGTCACTTACTTCACACTTATAATTTC | + |
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Preference number: 3 (lower is better) Translates to: SPYSLTLLNDIN*PLCHLLHTYNF Trigger: GAAATTATAAGTGTGAAGTAAGTGACACAGAGGGCAGTTTATGTCATTAAGTAGTGTAAGGGAATAGGGAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR TCA 72 bp | TTAGCAATTGTGAACAACAGTCAAAATGAAACATCGTaGTCTTGCCAAAGTGTATGCTTAACTGTAAATTGG | + |
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Preference number: 3 (lower is better) Translates to: LAIVNNSQNETS*SCQSVCLTVNW Trigger: CCAATTTACAGTTAAGCATACACTTTGGCAAGATCACGATGTTTCATTTTGACTGTTGTTCACAATTGCTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS-3UTR GCA 90 bp | GAACACAGGATGTTAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACGTGCTGTCCCCCGATaGGCCCGCGGGAGTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: EHRMLAPSCDGECGGGSQRAVPR*ARGSRR Trigger: ACGGCGACTCCCGCGGGCGCATCGGGGGACAGCACG...TTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTAACATCCTGTGTTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS-3UTR GCA 90 bp | GAACACAGGATGTTAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACTTTCTGGGGCCGGCTaGAGCGGCCGCACTCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: EHRMLAPSCDGECGGGSQLSGAG*SGRTRA Trigger: GGCCCGAGTGCGGCCGCTGCAGCCGGCCCCAGAAAG...TTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTAACATCCTGTGTTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS-3UTR GCA 90 bp | GAGGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCGTGCTGTCCCCCGATaGGCCCGCGGGAGTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: EVGHAFQPRTWEAEAARSRAVPR*ARGSRR Trigger: ACGGCGACTCCCGCGGGCGCATCGGGGGACAGCACG...AGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR GCA 90 bp | GATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAGCACCACAGGGACAGCTTTCTGGGGCCGGCTaGAGCGGCCGCACTCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: DVTQSCQPVTGKLAPQGQLSGAG*SGRTRA Trigger: GGCCCGAGTGCGGCCGCTGCAGCCGGCCCCAGAAAG...CTGTCCCTGTGGTGCTAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR TCA 90 bp | GAACACAGGATGTTAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAAAAAGAACACAGAGCTTaGAGGGGGCGGAGCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: EHRMLAPSCDGECGGGSQKEHRA*RGRSRV Trigger: GACCCTGCTCCGCCCCCTTCAAGCTCTGTGTTCTTT...TTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTAACATCCTGTGTTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS-3UTR CCA 90 bp | GGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTAAGTGGGTAGAGATCTaGAGTGGGCGCACTGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GGACFSAQNLGGRSSQISKWVEI*SGRTGR Trigger: TCTCCCAGTGCGCCCACTCCAGATCTCTACCCACTT...AGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| 3UTR CAA 72 bp | CTAGACAGAGGTGGGGCATGCTTTTCAGCCCAGAACTaGGGAGGCAGAAGCAGCCAGATCTCTGAGTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LDRGGACFSAQN*GGRSSQISEFE Trigger: CTCAAACTCAGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCTCTGTCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR GCA 90 bp | ATCCCCCATAGAGAATGCAGGTTATTTCAAAATTATATGTCTCCACAGGAATTCCGTGCTGTCCCCCGATaGGCCCGCGGGAGTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: IPHRECRLFQNYMSPQEFRAVPR*ARGSRR Trigger: ACGGCGACTCCCGCGGGCGCATCGGGGGACAGCACG...GAATTCCTGTGGAGACATATAATTTTGAAATAACCTGCATTCTCTATGGGGGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR CCA 90 bp | CAAATACAGAAGCTAGACAGAGGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAAAGTGGGTAGAGATCTaGAGTGGGCGCACTGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: QIQKLDRGGACFSAQNLGKWVEI*SGRTGR Trigger: TCTCCCAGTGCGCCCACTCCAGATCTCTACCCACTT...TCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCTCTGTCTAGCTTCTGTATTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR GCA 90 bp | CAATCCGTTTCTCAGAAGATATTCCTTGCTGAGGCGAATCTGAGCGCCATGCTGCTGTGCGCAACACTCTaGTTTCCTCTGCTGGATGCT | + |
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Preference number: 4 (lower is better) Translates to: QSVSQKIFLAEANLSAMLLCATL*FPLLDA Trigger: AGCATCCAGCAGAGGAAAGCAGAGTGTTGCGCACAG...CAGCATGGCGCTCAGATTCGCCTCAGCAAGGAATATCTTCTGAGAAACGGATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| CDS-3UTR CCA 90 bp | GACTGGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAGCACCAGGTAGAGATCTGGAGTaGGCGCACTGGGAGATATGG | + |
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Preference number: 4 (lower is better) Translates to: DWEDVTQSCQPVTGKLAPGRDLE*AHWEIW Trigger: CCATATCTCCCAGTGCGCCCACTCCAGATCTCTACC...TGGTGCTAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR CCA 90 bp | GAGGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTTCTGCTTTCCTCTGCTaGATGCTGGATTATGTACAA | + |
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Preference number: 4 (lower is better) Translates to: EVGHAFQPRTWEAEAARSSAFLC*MLDYVQ Trigger: TTGTACATAATCCAGCATCCAGCAGAGGAAAGCAGA...AGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR CCA 90 bp | GTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTGAAGGCACCTGTTTGTTaGTTGCATCCGAATTACATA | + |
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Preference number: 4 (lower is better) Translates to: VGHAFQPRTWEAEAARSLKAPVC*LHPNYI Trigger: TATGTAATTCGGATGCAACCAACAAACAGGTGCCTT...CAGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR GCA 90 bp | AGCCTAGACTGGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTACTGTGCGCAACACTCTaGTTTCCTCTGCTGGATGCT | + |
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Preference number: 4 (lower is better) Translates to: SLDWEDVTQSCQPVTGKLLCATL*FPLLDA Trigger: AGCATCCAGCAGAGGAAAGCAGAGTGTTGCGCACAG...TAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTCTAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR GCA 90 bp | AGCCTAGACTGGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAACGCTAGTTTTTAACTaGACCTCTGCTGGATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SLDWEDVTQSCQPVTGKLTLVFN*TSAGCW Trigger: CCAGCATCCAGCAGAGGTGCAGTTAAAAACTAGCGT...TAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTCTAGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025383.10 |
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| CDS-3UTR CCA 90 bp | ATCCCCCATAGAGAATGCAGGTTATTTCAAAATTATATGTCTCCACAGGAATTCGGTAGAGATCTGGAGTaGGCGCACTGGGAGATATGG | + |
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Preference number: 4 (lower is better) Translates to: IPHRECRLFQNYMSPQEFGRDLE*AHWEIW Trigger: CCATATCTCCCAGTGCGCCCACTCCAGATCTCTACC...GAATTCCTGTGGAGACATATAATTTTGAAATAACCTGCATTCTCTATGGGGGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR CCA 90 bp | AAGCATAAAAATAATCAGAAACTGGTGTGTGTTCATGCCACACACAGAGGTATTGGTAGAGATCTGGAGTaGGCGCACTGGGAGATATGG | + |
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Preference number: 4 (lower is better) Translates to: KHKNNQKLVCVHATHRGIGRDLE*AHWEIW Trigger: CCATATCTCCCAGTGCGCCCACTCCAGATCTCTACC...AATACCTCTGTGTGTGGCATGAACACACACCAGTTTCTGATTATTTTTATGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS-3UTR CCA 90 bp | GACTGGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAGCACCAAAGGCACCTGTTTGTTaGTTGCATCCGAATTACATA | + |
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Preference number: 4 (lower is better) Translates to: DWEDVTQSCQPVTGKLAPKAPVC*LHPNYI Trigger: TATGTAATTCGGATGCAACCAACAAACAGGTGCCTT...TGGTGCTAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR CCA 90 bp | AGCCTAGACTGGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTATCTGCTTTCCTCTGCTaGATGCTGGATTATGTACAA | + |
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Preference number: 4 (lower is better) Translates to: SLDWEDVTQSCQPVTGKLSAFLC*MLDYVQ Trigger: TTGTACATAATCCAGCATCCAGCAGAGGAAAGCAGA...TAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTCTAGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR CCA 90 bp | AGCCTAGACTGGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTATTAACTGCACCTGTTTaGGAAGTCGGAACAAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: SLDWEDVTQSCQPVTGKLLTAPV*EVGTRN Trigger: ATTCCTTGTTCCGACTTCCCAAACAGGTGCAGTTAA...TAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTCTAGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS-3UTR GCA 90 bp | CCCTATTCCCTTACACTACTTAATGACATAAACTGCCCTCTGTGTCACTTACTTACGCTAGTTTTTAACTaGACCTGTTTGGGAAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: PYSLTLLNDINCPLCHLLTLVFN*TCLGSR Trigger: CCGACTTCCCAAACAGGTGCAGTTAAAAACTAGCGT...AAGTAAGTGACACAGAGGGCAGTTTATGTCATTAAGTAGTGTAAGGGAATAGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS GCA 90 bp | GGGCCTGCGCTCCGCGTGCTCCACCGGCAGCCCCCAGAGCCCGTCTaGACTCGTGCTGTCCCCCGATGCGCCCGCGGGAGTCGCCGTCGG | + |
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Preference number: 5 (lower is better) Translates to: GPALRVLHRQPPEPV*TRAVPRCARGSRRR Trigger: CCGACGGCGACTCCCGCGGGCGCATCGGGGGACAGCACGAGTGCAGACGGGCTCTGGGGGCTGCCGGTGGAGCACGCGGAGCGCAGGCCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR CAA 90 bp | GGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTGAGTAAGCGGCGGCCAATCTaGACTGTGCATCTGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: GHAFQPRTWEAEAARSLSKRRPI*TVHLSG Trigger: CCCAGACAGATGCACAGTCAAGATTGGCCGCCGCTT...ACTCAGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS-3UTR CAA 90 bp | CAATCCGTTTCTCAGAAGATATTCCTTGCTGAGGCGAATCTGAGCGCCATGCTGAAGCGGCGGCCAATCTaGACTGTGCATCTGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: QSVSQKIFLAEANLSAMLKRRPI*TVHLSG Trigger: CCCAGACAGATGCACAGTCAAGATTGGCCGCCGCTT...CAGCATGGCGCTCAGATTCGCCTCAGCAAGGAATATCTTCTGAGAAACGGATTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237137.2 |
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| CDS-3UTR CAA 90 bp | GGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTGCACCTGTTTGTTGGTaGCATCCGAATTACATACTG | + |
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Preference number: 5 (lower is better) Translates to: GGACFSAQNLGGRSSQISAPVCW*HPNYIL Trigger: CAGTATGTAATTCGGATGCAACCAACAAACAGGTGC...AGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR CAA 90 bp | AGGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCGTTTGCGTTTGTTCTTaGGCATTGGCTTGGGATACA | + |
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Preference number: 5 (lower is better) Translates to: RWGMLFSPELGRQKQPDLVCVCS*ALAWDT Trigger: TGTATCCCAAGCCAATGCCAAAGAACAAACGCAAAC...GAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR CAA 90 bp | GGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGGCAGAAGCAGCCAGATCTCTAAAGGCACCTGTTTGTaGGTTGCATCCGAATTACAT | + |
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Preference number: 5 (lower is better) Translates to: GGACFSAQNLGGRSSQISKGTCL*VASELH Trigger: ATGTAATTCGGATGCAACCAACAAACAGGTGCCTTT...AGAGATCTGGCTGCTTCTGCCTCCCAAGTTCTGGGCTGAAAAGCATGCCCCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR CAA 90 bp | CAAATACAGAAGCTAGACAGAGGTGGGGCATGCTTTTCAGCCCAGAACTTGGGAGCACCTGTTTGTTGGTaGCATCCGAATTACATACTG | + |
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Preference number: 5 (lower is better) Translates to: QIQKLDRGGACFSAQNLGAPVCW*HPNYIL Trigger: CAGTATGTAATTCGGATGCAACCAACAAACAGGTGC...TCCCAAGTTCTGGGCTGAAAAGCATGCCCCACCTCTGTCTAGCTTCTGTATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR CAA 90 bp | AGCCTAGACTGGGAAGATGTAACACAGTCTTGTCAGCCAGTGACAGGTAAACTAAAAGGCACCTGTTTGTaGGTTGCATCCGAATTACAT | + |
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Preference number: 5 (lower is better) Translates to: SLDWEDVTQSCQPVTGKLKGTCL*VASELH Trigger: ATGTAATTCGGATGCAACCAACAAACAGGTGCCTTT...TAGTTTACCTGTCACTGGCTGACAAGACTGTGTTACATCTTCCCAGTCTAGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR CAA 90 bp | CCCTATTCCCTTACACTACTTAATGACATAAACTGCCCTCTGTGTCACTTACTTGTTTGCGTTTGTTCTTaGGCATTGGCTTGGGATACA | + |
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Preference number: 5 (lower is better) Translates to: PYSLTLLNDINCPLCHLLVCVCS*ALAWDT Trigger: TGTATCCCAAGCCAATGCCAAAGAACAAACGCAAAC...AAGTAAGTGACACAGAGGGCAGTTTATGTCATTAAGTAGTGTAAGGGAATAGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 |
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| CDS-3UTR CAA 90 bp | ATCCCCCATAGAGAATGCAGGTTATTTCAAAATTATATGTCTCCACAGGAATTCTTTAACTGCACCTGTTaGGGAAGTCGGAACAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: IPHRECRLFQNYMSPQEFFNCTC*GSRNKE Trigger: TTCCTTGTTCCGACTTCCCAAACAGGTGCAGTTAAA...GAATTCCTGTGGAGACATATAATTTTGAAATAACCTGCATTCTCTATGGGGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163590.9 |
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| CDS GCA 72 bp | GTCCCCCGATGCGCCCGCGGGAGTCGCCGTCGGCGGTaGGCCGCCCTCGGTCCGCTCCTCTTCGTCCGGCGT | + |
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Preference number: 6 (lower is better) Translates to: VPRCARGSRRRR*AALGPLLFVRR Trigger: ACGCCGGACGAAGAGGAGCGGACCGAGGGCGGCGCACCGCCGACGGCGACTCCCGCGGGCGCATCGGGGGAC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS GCA 72 bp | CCCCCAGAGCCCGTCTGCACTCGTGCTGTCCCCCGATaGGCCCGCGGGAGTCGCCGTCGGCGGTGCGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: PPEPVCTRAVPR*ARGSRRRRCAA Trigger: GGCGGCGCACCGCCGACGGCGACTCCCGCGGGCGCATCGGGGGACAGCACGAGTGCAGACGGGCTCTGGGGG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025383.10 ENSMUST00000163590.9 ENSMUST00000237137.2 |
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| CDS CCA 72 bp | CAGAGGGACTGTGCGCAACACTCTGCTTTCCTCTGCTaGATGCTGGATTATGTACAAGTGGGTAGAGATCTG | + |
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Preference number: 6 (lower is better) Translates to: QRDCAQHSAFLC*MLDYVQVGRDL Trigger: CAGATCTCTACCCACTTGTACATAATCCAGCATCCAGCAGAGGAAAGCAGAGTGTTGCGCACAGTCCCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163590.9 ENSMUST00000237137.2 |
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