RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DTNA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024302

Ensembl transcript IDs: ENSMUST00000047954.15, ENSMUST00000115832.4, ENSMUST00000220904.2, ENSMUST00000221880.2, ENSMUST00000222726.2

Found 460 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGCGTCAGAACACTTCTTTAGGGGAGGGGGTTGTTGGAGCTGCTaGGTGTGGTGGCTCCTCTTTCCCAGCGAGCGAGCGGGAGGCTGC +
Preference number: 1 (lower is better)
Translates to: QASEHFFRGGGCWSC*VWWLLFPSERAGGC
Trigger: GCAGCCTCCCGCTCGCTCGCTGGGAAAGAGGAGCCACCACACCCAGCAGCTCCAACAACCCCCTCCCCTAAAGAAGTGTTCTGACGCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 90 bp GGCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTaGCATGATCTAAGTCCAGCAGCCACACCCCAGGGATGCAGGGAT +
Preference number: 1 (lower is better)
Translates to: GGAKSVCKELSRDTP*HDLSPAATPQGCRD
Trigger: ATCCCTGCATCCCTGGGGTGTGGCTGCTGGACTTAGATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 90 bp CCATGCTACAGCCCTTACTGTGGTGACCCTTCAACATGCAGAGGCTaGGAGGGGCTGTACAGGAAAGGGATAGAAAGGGACCTGACAAAG +
Preference number: 1 (lower is better)
Translates to: PCYSPYCGDPSTCRG*EGLYRKGIERDLTK
Trigger: CTTTGTCAGGTCCCTTTCTATCCCTTTCCTGTACAGCCCCTCCCAGCCTCTGCATGTTGAAGGGTCACCACAGTAAGGGCTGTAGCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR GCA 90 bp CCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTaGGTGGAATTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCA +
Preference number: 1 (lower is better)
Translates to: PYLLRTQWSSLLVAP*VELNQCELSNPRLP
Trigger: TGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR TCA 90 bp GGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATaGTCTAAGTCCAGCAGCCACACCCCAGGGATGCAGGGATGGACA +
Preference number: 1 (lower is better)
Translates to: GKVCLQRVIKGYTLP*SKSSSHTPGMQGWT
Trigger: TGTCCATCCCTGCATCCCTGGGGTGTGGCTGCTGGACTTAGATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 90 bp GCTGACAGAAATGCAGGTATCTGGGATGTAGTGGTTTTTCAGTACTaGGGAGGAGGCACCAATGGCCACCTGCACCATCTAGAGAGGTGT +
Preference number: 1 (lower is better)
Translates to: ADRNAGIWDVVVFQY*GGGTNGHLHHLERC
Trigger: ACACCTCTCTAGATGGTGCAGGTGGCCATTGGTGCCTCCTCCTCAGTACTGAAAAACCACTACATCCCAGATACCTGCATTTCTGTCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 90 bp CTGTGGAGAGCAAGGCGTGGAGGAGTGCAGGTAACTGTAGTCCGTTaGGGGACCTTATGGCACCTGTGGTTTATAAACAGCTTTAGTAAC +
Preference number: 1 (lower is better)
Translates to: LWRARRGGVQVTVVR*GTLWHLWFINSFSN
Trigger: GTTACTAAAGCTGTTTATAAACCACAGGTGCCATAAGGTCCCCCAACGGACTACAGTTACCTGCACTCCTCCACGCCTTGCTCTCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 90 bp GCTGGGATCATAGGCATGTGTCACCATGCCAGGTTTATACAGCCCTaGAAGCTTGAACCAAGGGCTTTGTGTATGCTAAGCAAACCCTCG +
Preference number: 1 (lower is better)
Translates to: AGIIGMCHHARFIQP*KLEPRALCMLSKPS
Trigger: CGAGGGTTTGCTTAGCATACACAAAGCCCTTGGTTCAAGCTTCCAGGGCTGTATAAACCTGGCATGGTGACACATGCCTATGATCCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 90 bp CATAGGCATGTGTCACCATGCCAGGTTTATACAGCCCTGGAAGCTTaGACCAAGGGCTTTGTGTATGCTAAGCAAACCCTCGGCCAATTG +
Preference number: 1 (lower is better)
Translates to: HRHVSPCQVYTALEA*TKGFVYAKQTLGQL
Trigger: CAATTGGCCGAGGGTTTGCTTAGCATACACAAAGCCCTTGGTTCAAGCTTCCAGGGCTGTATAAACCTGGCATGGTGACACATGCCTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 90 bp GGTTTGCTCTTGTGGGGCTGCAGCTTGGGCAACAACATTGACATTTaGGGAGCTCTAATGACTGACCTTCTATCAAGAGAAGGGTCCCGA +
Preference number: 1 (lower is better)
Translates to: GLLLWGCSLGNNIDI*GALMTDLLSREGSR
Trigger: TCGGGACCCTTCTCTTGATAGAAGGTCAGTCATTAGAGCTCCTCAAATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAAGAGCAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR GCA 90 bp CAACAAAATCCACCTGTGCAAAGAAATCAGAGAACTGTGCAGTTGTaGGACTTTGGTGCTAGCCTGAGCTCAGGGAACTTTGCGAGGTGG +
Preference number: 1 (lower is better)
Translates to: QQNPPVQRNQRTVQL*DFGASLSSGNFARW
Trigger: CCACCTCGCAAAGTTCCCTGAGCTCAGGCTAGCACCAAAGTCGCACAACTGCACAGTTCTCTGATTTCTTTGCACAGGTGGATTTTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 90 bp ACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCCTGTaGGATACAGTTGAACAGAATGGACAGACGGATGAAACCTGCTGG +
Preference number: 1 (lower is better)
Translates to: TWVCNSWWDKKEPSL*DTVEQNGQTDETCW
Trigger: CCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACAGGGATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR TCA 90 bp GATCATCCGATAATCCATCTTCATAGTCTCCAACACGTCTCCCTCTaGCCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAAC +
Preference number: 1 (lower is better)
Translates to: DHPIIHLHSLQHVSL*PTKLTPTSILTNHN
Trigger: GTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGGAGACTATGAAGATGGATTATCGGATGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR TCA 90 bp ATGCACAGGGTGCTCAAGCTGCTTTTCTTTTGCTCTAGTTTGGTTTaGCTTCTCTCGGTGTACAGCTTCTTCTGCTTGCTTCTGAACCTG +
Preference number: 1 (lower is better)
Translates to: MHRVLKLLFFCSSLV*LLSVYSFFCLLLNL
Trigger: CAGGTTCAGAAGCAAGCAGAAGAAGCTGTACACCGAGAGAAGTCAAACCAAACTAGAGCAAAAGAAAAGCAGCTTGAGCACCCTGTGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 90 bp CAGCAGCAGGCTCTCAGCCTGTGGGTGTTTGTTTTGAACCAGGGATaGGCCATGTTACAGAAGATGGAGTTGATAAATTATCTAGGAACA +
Preference number: 1 (lower is better)
Translates to: QQQALSLWVFVLNQG*AMLQKMELINYLGT
Trigger: TGTTCCTAGATAATTTATCAACTCCATCTTCTGTAACATGGCTCATCCCTGGTTCAAAACAAACACCCACAGGCTGAGAGCCTGCTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 90 bp TTTAAAGCTGAAGGTCTCGGGACTACCGATGAGGGAACTTGTCAATaGGCAGTGCTGTGTAAGACATGCTTCCTAAAGATACACTGTGGA +
Preference number: 1 (lower is better)
Translates to: FKAEGLGTTDEGTCQ*AVLCKTCFLKIHCG
Trigger: TCCACAGTGTATCTTTAGGAAGCATGTCTTACACAGCACTGCTCATTGACAAGTTCCCTCATCGGTAGTCCCGAGACCTTCAGCTTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 90 bp CTCCCACCCCAATTTCTTCAAGACAGGGTGTTATATATCCTAGACTaGCCTCAAATTCACTATGTAGCTGAGGATGACCTCAAACTCCCA +
Preference number: 1 (lower is better)
Translates to: LPPQFLQDRVLYILD*PQIHYVAEDDLKLP
Trigger: TGGGAGTTTGAGGTCATCCTCAGCTACATAGTGAATTTGAGGCCAGTCTAGGATATATAACACCCTGTCTTGAAGAAATTGGGGTGGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 90 bp GTAGAAACCAAGGAGATAAGAGAGAATGAGTGTGTAACCTACATTTaGGTCTCTGGCAGATGGCTTCTATCCATGCTACAGCCCTTACTG +
Preference number: 1 (lower is better)
Translates to: VETKEIRENECVTYI*VSGRWLLSMLQPLL
Trigger: CAGTAAGGGCTGTAGCATGGATAGAAGCCATCTGCCAGAGACCCAAATGTAGGTTACACACTCATTCTCTCTTATCTCCTTGGTTTCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR GCA 90 bp CTGTTTCTACATGCATGCAAAATAAGAGGCGGGGCAAAGTCTGTTTaGAAAGAGTTATCAAGGGATACACCCTGCCATGATCTAAGTCCA +
Preference number: 1 (lower is better)
Translates to: LFLHACKIRGGAKSV*KELSRDTPCHDLSP
Trigger: TGGACTTAGATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTCTTATTTTGCATGCATGTAGAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 90 bp TCTTTTTGGTTCAAAGGAAAAATGCCCTACCTTCTGAGGACACAGTaGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAATGT +
Preference number: 1 (lower is better)
Translates to: SFWFKGKMPYLLRTQ*SSLLVAPCVELNQC
Trigger: ACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTTGAACCAAAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR CCA 90 bp ATTCTATGGCTGAGTCAGAGTATGTTGAAGGAAAACAATCCACTTTaGAAAGGAGCCCCCAAGAGCCCATTATTCCTGTTGGTAGGTTTA +
Preference number: 1 (lower is better)
Translates to: ILWLSQSMLKENNPL*KGAPKSPLFLLVGL
Trigger: TAAACCTACCAACAGGAATAATGGGCTCTTGGGGGCTCCTTTCCAAAGTGGATTGTTTTCCTTCAACATACTCTGACTCAGCCATAGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 90 bp ACGGAGCTAGGAAATATCATCATACACTTTGGTACATGCACAGGGTaGTCAAGCTGCTTTTCTTTTGCTCTAGTTTGGTTTGACTTCTCT +
Preference number: 1 (lower is better)
Translates to: TELGNIIIHFGTCTG*SSCFSFALVWFDFS
Trigger: AGAGAAGTCAAACCAAACTAGAGCAAAAGAAAAGCAGCTTGAGCACCCTGTGCATGTACCAAAGTGTATGATGATATTTCCTAGCTCCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 90 bp GTGAAATCTTTAAATAACGGAGCTAGGAAATATCATCATACACTTTaGTACATGCACAGGGTGCTCAAGCTGCTTTTCTTTTGCTCTAGT +
Preference number: 1 (lower is better)
Translates to: VKSLNNGARKYHHTL*YMHRVLKLLFFCSS
Trigger: ACTAGAGCAAAAGAAAAGCAGCTTGAGCACCCTGTGCATGTACCAAAGTGTATGATGATATTTCCTAGCTCCGTTATTTAAAGATTTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CCA 90 bp AGTTCAGTCCAGCCAGCGACTGAGGGCCACCAGCAGGGTCTGAGGTCTAATGTAGCCCTCTGCAGACAGTaGGGTCAGAAAGTGAGTTCT +
Preference number: 2 (lower is better)
Translates to: SSVQPATEGHQQGLRSNVALCRQ*GQKVSS
Trigger: AGAACTCACTTTCTGACCCCACTGTCTGCAGAGGGC...TACATTAGACCTCAGACCCTGCTGGTGGCCCTCAGTCGCTGGCTGGACTGAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR TCA 90 bp CTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTGTCTGGTCTCAGTGCTaGCGTGGAGTTGAGAGGAGA +
Preference number: 2 (lower is better)
Translates to: LWGGLAVLDQCSFIGHQLVWSQC*RGVERR
Trigger: TCTCCTCTCAACTCCACGTCAGCACTGAGACCAGAC...AAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
3UTR-3UTR CCA 90 bp GTGATTTCACAGAGGACGATGGGCAGGGGAAGAGAGATGAACGTTAAGACACGCGGTTGTTGGAGCTGCTaGGTGTGGTGGCTCCTCTTT +
Preference number: 2 (lower is better)
Translates to: VISQRTMGRGREMNVKTRGCWSC*VWWLLF
Trigger: AAAGAGGAGCCACCACACCCAGCAGCTCCAACAACC...GCGTGTCTTAACGTTCATCTCTCTTCCCCTGCCCATCGTCCTCTGTGAAATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 90 bp AGCCCATTATTCCTGTTGGTAGGTTTAATCATTTCTCAGAGGGACTaGGGGACATGGGTAGGCCAAGGACCCTTCTTGGCTCCTGGGTCC +
Preference number: 2 (lower is better)
Translates to: SPLFLLVGLIISQRD*GTWVGQGPFLAPGS
Trigger: GGACCCAGGAGCCAAGAAGGGTCCTTGGCCTACCCATGTCCCCAAGTCCCTCTGAGAAATGATTAAACCTACCAACAGGAATAATGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 90 bp CCGCAACAAAATCCACCTGTGCAAAGAAATCAGAGAACTGTGCAGTaGTGCGACTTTGGTGCTAGCCTGAGCTCAGGGAACTTTGCGAGG +
Preference number: 2 (lower is better)
Translates to: PQQNPPVQRNQRTVQ*CDFGASLSSGNFAR
Trigger: CCTCGCAAAGTTCCCTGAGCTCAGGCTAGCACCAAAGTCGCACAACTGCACAGTTCTCTGATTTCTTTGCACAGGTGGATTTTGTTGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR CCA 90 bp GGGCTTCAGAGTATGACCCAGCCCAACGGTCATGATGCCCCTATCTCCAGAAAATGTGGGGCTGCAGCTTaGGCAACAACATTGACATTT +
Preference number: 2 (lower is better)
Translates to: GLQSMTQPNGHDAPISRKCGAAA*ATTLTF
Trigger: AAATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACA...TTTTCTGGAGATAGGGGCATCATGACCGTTGGGCTGGGTCATACTCTGAAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR GCA 90 bp CTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCACCTATTGTAGATTGTTaGCCCCCTTCCCTCCCAGTT +
Preference number: 2 (lower is better)
Translates to: LPLTNQTYPNFHPDKPQPPIVDC*PPSLPV
Trigger: AACTGGGAGGGAAGGGGGGCAACAATCTACAATAGG...TGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR CCA 90 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAACCATCTCCTGAGTGCTaGGATCATAGGCATGTGTCA +
Preference number: 2 (lower is better)
Translates to: LRTQWSSLLVAPCVELNQPSPEC*DHRHVS
Trigger: TGACACATGCCTATGATCCCAGCACTCAGGAGATGG...TTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 90 bp TTCAAAGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTaGCTTGTGGCTCCTTGCGTGGAATTGAACCAATGTGAGCTCAGC +
Preference number: 2 (lower is better)
Translates to: FKGKMPYLLRTQWSS*LVAPCVELNQCELS
Trigger: GCTGAGCTCACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR-3UTR TCA 90 bp TCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTGGCTTGGGAGTCATCCCTGGTaGAAATTTGGCGTCAGTTCA +
Preference number: 2 (lower is better)
Translates to: SSSHRTISMGLDLMGSWLGSHPW*KFGVSS
Trigger: TGAACTGACGCCAAATTTTCACCAGGGATGACTCCC...AAGCCAGGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR GCA 90 bp TCTTACAGGATTGAACACATCTATGAGCACAGGATGGGTGGCATAGCTTATGTTCACAGTGTGGAGGTTTaGTCTTGTGGGGCTGCAGCT +
Preference number: 2 (lower is better)
Translates to: SYRIEHIYEHRMGGIAYVHSVEV*SCGAAA
Trigger: AGCTGCAGCCCCACAAGAGCAAACCTCCACACTGTG...AACATAAGCTATGCCACCCATCCTGTGCTCATAGATGTGTTCAATCCTGTAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR TCA 90 bp TTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTGTGCTGACGTGGAGTTaGGAGGAGAGTGAGAAAAGG +
Preference number: 2 (lower is better)
Translates to: LNQCELSNPRLPYLQYLSVLTWS*EESEKR
Trigger: CCTTTTCTCACTCTCCTCTCAACTCCACGTCAGCAC...AGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
3UTR-3UTR GCA 90 bp GGTTTGCATTTAGAACAGGCCCCAAAAGTAAATTTGGAGAGCCAAGGAAAGAAACTCAAACTCCCAGTCTaGCTGCCTCCATCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: GLHLEQAPKVNLESQGKKLKLPV*LPPSPE
Trigger: CTCAGGAGATGGAGGCAGGCAGACTGGGAGTTTGAG...TTTCTTTCCTTGGCTCTCCAAATTTACTTTTGGGGCCTGTTCTAAATGCAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR CCA 90 bp AGTTTAATCACTTCAAAATATAACATGTCCCCAGGAGGTTCCAACACACACACAAGGGACTTGGGGACATaGGTAGGCCAAGGACCCTTC +
Preference number: 2 (lower is better)
Translates to: SLITSKYNMSPGGSNTHTRDLGT*VGQGPF
Trigger: GAAGGGTCCTTGGCCTACCCATGTCCCCAAGTCCCT...TGTGTGTGTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGATTAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 90 bp AACACCCTCGAGGATCTGAACAAAACCTTCCCAAGGAATCACAAGTaGTTCTCCCTTCTCAACACAAAACCGGTCTTCATTTGTTGCCGT +
Preference number: 2 (lower is better)
Translates to: NTLEDLNKTFPRNHK*FSLLNTKPVFICCR
Trigger: ACGGCAACAAATGAAGACCGGTTTTGTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTTTGTTCAGATCCTCGAGGGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR GCA 90 bp TACAGGAAAGGGATAGAAAGGGACCTGACAAAGTTCAACCTAAAGGGCACTCCCGGGGCAAAGTCTGTTTaGAAAGAGTTATCAAGGGAT +
Preference number: 2 (lower is better)
Translates to: YRKGIERDLTKFNLKGTPGAKSV*KELSRD
Trigger: ATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCC...GGGAGTGCCCTTTAGGTTGAACTTTGTCAGGTCCCTTTCTATCCCTTTCCTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR GCA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTTAAGGCAAGACAATTaGCCTCTCTGCCCAGAGGGA +
Preference number: 2 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSLRQDN*PLCPEG
Trigger: TCCCTCTGGGCAGAGAGGGCAATTGTCTTGCCTTAA...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CCA 90 bp ACAAAGTTCAACCTAAAGGGCACTCCCACAGCCTGGCTCTATGAATGCATAAAAAATATACTTGGGAAATaGAGGGAAGGGGTCCCCAAG +
Preference number: 2 (lower is better)
Translates to: TKFNLKGTPTAWLYECIKNILGK*REGVPK
Trigger: CTTGGGGACCCCTTCCCTCCATTTCCCAAGTATATT...TTTTATGCATTCATAGAGCCAGGCTGTGGGAGTGCCCTTTAGGTTGAACTTTGT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CAA 90 bp GCAATTCATGGTGGGATAAGAAAGAACCATCCCTGTGAGATACAGTaGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTT +
Preference number: 2 (lower is better)
Translates to: AIHGGIRKNHPCEIQ*NRMDRRMKPAGFAF
Trigger: AAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACAGGGATGGTTCTTTCTTATCCCACCATGAATTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
3UTR-3UTR TCA 90 bp AGGGTGTTATATATCCTAGACTGGCCTCAAATTCACTATGTAGCTGAGGATGACATCCCAATACCACACTaGAGAGCTTGTCTGTCTCCT +
Preference number: 2 (lower is better)
Translates to: RVLYILDWPQIHYVAEDDIPIPH*RACLSP
Trigger: AGGAGACAGACAAGCTCTTCAGTGTGGTATTGGGAT...GTCATCCTCAGCTACATAGTGAATTTGAGGCCAGTCTAGGATATATAACACCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR GCA 90 bp TACAGGAAAGGGATAGAAAGGGACCTGACAAAGTTCAACCTAAAGGGCACTCCCAGGCTACAAATACAGTaGATCTTTAAGACAAGGGAG +
Preference number: 2 (lower is better)
Translates to: YRKGIERDLTKFNLKGTPRLQIQ*IFKTRE
Trigger: CTCCCTTGTCTTAAAGATGCACTGTATTTGTAGCCT...GGGAGTGCCCTTTAGGTTGAACTTTGTCAGGTCCCTTTCTATCCCTTTCCTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR GCA 90 bp ACAAAGTTCAACCTAAAGGGCACTCCCACAGCCTGGCTCTATGAATGCATAAAACTGTTTCTACATGCATaGAAAATAAGAGGCGGGGCA +
Preference number: 2 (lower is better)
Translates to: TKFNLKGTPTAWLYECIKLFLHA*KIRGGA
Trigger: TGCCCCGCCTCTTATTTTGCATGCATGTAGAAACAG...TTTTATGCATTCATAGAGCCAGGCTGTGGGAGTGCCCTTTAGGTTGAACTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CCA 90 bp CAACAAAATCCACCTGTGCAAAGAAATCAGAGAACTGTGCAGTTGTGCGACTTTCGTTGGGGGACCTTATaGCACCTGTGGTTTATAAAC +
Preference number: 2 (lower is better)
Translates to: QQNPPVQRNQRTVQLCDFRWGTL*HLWFIN
Trigger: GTTTATAAACCACAGGTGCCATAAGGTCCCCCAACG...AAAGTCGCACAACTGCACAGTTCTCTGATTTCTTTGCACAGGTGGATTTTGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 90 bp CTTATTCTCTTGTCTTTGACAGTTCTTTTACACACCAGCTTCCAGTaGAGTGTGACATCCCAATACCACACTGAAGAGCTTGTCTGTCTC +
Preference number: 2 (lower is better)
Translates to: LILLSLTVLLHTSFQ*SVTSQYHTEELVCL
Trigger: GAGACAGACAAGCTCTTCAGTGTGGTATTGGGATGTCACACTCAACTGGAAGCTGGTGTGTAAAAGAACTGTCAAAGACAAGAGAATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 90 bp CAAGAGAAGGGTCCCGACAATAACCTCAAAGAGCATAACATGAATTaGAAACTTAACACCCTCGAGGATCTGAACAAAACCTTCCCAAGG +
Preference number: 2 (lower is better)
Translates to: QEKGPDNNLKEHNMN*KLNTLEDLNKTFPR
Trigger: CCTTGGGAAGGTTTTGTTCAGATCCTCGAGGGTGTTAAGTTTCAAATTCATGTTATGCTCTTTGAGGTTATTGTCGGGACCCTTCTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CCA 90 bp AGTTTAATCACTTCAAAATATAACATGTCCCCAGGAGGTTCCAACACACACACACAGGCTCTCAGCCTGTaGGTGTTTGTTTTGAACCAG +
Preference number: 2 (lower is better)
Translates to: SLITSKYNMSPGGSNTHTQALSL*VFVLNQ
Trigger: CTGGTTCAAAACAAACACCCACAGGCTGAGAGCCTG...TGTGTGTGTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGATTAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR TCA 90 bp CTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGAATCCTATACAGTCTATTCTAGAACAATaGTTTCCACTTCCTAGCACA +
Preference number: 2 (lower is better)
Translates to: LTPTSILTNHNQFLNPIQSILEQ*FPLPST
Trigger: TGTGCTAGGAAGTGGAAATCATTGTTCTAGAATAGA...CTGTATAGGATTCAGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR GCA 90 bp AAAGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTTGCAAAGGTTTAAAATaGTCGTTAATACTGCTGTCC +
Preference number: 2 (lower is better)
Translates to: KGKMPYLLRTQWSSLLVACKGLK*SLILLS
Trigger: GGACAGCAGTATTAACGAGCATTTTAAACCTTTGCA...AGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR TCA 90 bp TCTTACAGGATTGAACACATCTATGAGCACAGGATGGGTGGCATAGCTTATGTTAACAACATTGACATTTaGGGAGCTCTAATGACTGAC +
Preference number: 2 (lower is better)
Translates to: SYRIEHIYEHRMGGIAYVNNIDI*GALMTD
Trigger: GTCAGTCATTAGAGCTCCTCAAATGTCAATGTTGTT...AACATAAGCTATGCCACCCATCCTGTGCTCATAGATGTGTTCAATCCTGTAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CCA 90 bp AGGCTGCCATATTTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAACACTCTCCACCACCGGATaGCATGTATCTTTCCTCATC +
Preference number: 2 (lower is better)
Translates to: RLPYLQYLSTLNSQELITLSTTG*HVSFLI
Trigger: GATGAGGAAAGATACATGCCATCCGGTGGTGGAGAG...TGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAAATATGGCAGCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR TCA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTACAGACCTTGGGAATaGAGAGTTAAAAAGTTTCCA +
Preference number: 2 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSYRPWE*RVKKFP
Trigger: TGGAAACTTTTTAACTCTTCATTCCCAAGGTCTGTA...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR GCA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCCTTGCAATCCACCACTaGATTTTTCTATTATATTCC +
Preference number: 2 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSLAIHH*IFLLYS
Trigger: GGAATATAATAGAAAAATGCAGTGGTGGATTGCAAG...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CCA 90 bp AGTTTAATCACTTCAAAATATAACATGTCCCCAGGAGGTTCCAACACACACACAACCTTATGGCACCTGTaGTTTATAAACAGCTTTAGT +
Preference number: 2 (lower is better)
Translates to: SLITSKYNMSPGGSNTHTTLWHL*FINSFS
Trigger: ACTAAAGCTGTTTATAAACCACAGGTGCCATAAGGT...TGTGTGTGTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGATTAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR GCA 90 bp CATGGCCACTTGCAATCCACCACTGCATTTTTCTATTATATTCCTTGGTACTTTTATTCTGAGCTTCCATaGAGTGGTATTTCTATGTTA +
Preference number: 2 (lower is better)
Translates to: HGHLQSTTAFFYYIPWYFYSELP*SGISML
Trigger: TAACATAGAAATACCACTGCATGGAAGCTCAGAATA...AAAGTACCAAGGAATATAATAGAAAAATGCAGTGGTGGATTGCAAGTGGCCATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 72 bp TTTAGGGGAGGGGGTTGTTGGAGCTGCTGGGTGTGGTaGCTCCTCTTTCCCAGCGAGCGAGCGGGAGGCTGC +
Preference number: 3 (lower is better)
Translates to: FRGGGCWSCWVW*LLFPSERAGGC
Trigger: GCAGCCTCCCGCTCGCTCGCTGGGAAAGAGGAGCCACCACACCCAGCAGCTCCAACAACCCCCTCCCCTAAA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp GAACACTTCTTTAGGGGAGGGGGTTGTTGGAGCTGCTaGGTGTGGTGGCTCCTCTTTCCCAGCGAGCGAGCG +
Preference number: 3 (lower is better)
Translates to: EHFFRGGGCWSC*VWWLLFPSERA
Trigger: CGCTCGCTCGCTGGGAAAGAGGAGCCACCACACCCAGCAGCTCCAACAACCCCCTCCCCTAAAGAAGTGTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 72 bp TCCAGGCCGCAGTCTTCCTCCTCTCTGTCGGGTGGGTaGAGCTCTCTCCACCACCGGATGGCATGTATCTTT +
Preference number: 3 (lower is better)
Translates to: SRPQSSSSLSGG*SSLHHRMACIF
Trigger: AAAGATACATGCCATCCGGTGGTGGAGAGAGCTGCACCCACCCGACAGAGAGGAGGAAGACTGCGGCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 72 bp AGGCACCAATGGCCACCTGCACCATCTAGAGAGGTGTaGTTTCACAGAGGACGATGGGCAGGGGAAGAGAGA +
Preference number: 3 (lower is better)
Translates to: RHQWPPAPSREV*FHRGRWAGEER
Trigger: TCTCTCTTCCCCTGCCCATCGTCCTCTGTGAAATCACACCTCTCTAGATGGTGCAGGTGGCCATTGGTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 72 bp CCATGCTACAGCCCTTACTGTGGTGACCCTTCAACATaGAGAGGCTGGGAGGGGCTGTACAGGAAAGGGATA +
Preference number: 3 (lower is better)
Translates to: PCYSPYCGDPST*RGWEGLYRKGI
Trigger: TATCCCTTTCCTGTACAGCCCCTCCCAGCCTCTGCATGTTGAAGGGTCACCACAGTAAGGGCTGTAGCATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 72 bp CCAGACCCCAGAGTTTCTGATCCAGTGGGTCTGGGTTaGAGCCTAGGAATCCACACTGGTAAGACTTCTGGG +
Preference number: 3 (lower is better)
Translates to: PDPRVSDPVGLG*SLGIHTGKTSG
Trigger: CCCAGAAGTCTTACCAGTGTGGATTCCTAGGCTCCAACCCAGACCCACTGGATCAGAAACTCTGGGGTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp AGCCCTTACTGTGGTGACCCTTCAACATGCAGAGGCTaGGAGGGGCTGTACAGGAAAGGGATAGAAAGGGAC +
Preference number: 3 (lower is better)
Translates to: SPYCGDPSTCRG*EGLYRKGIERD
Trigger: GTCCCTTTCTATCCCTTTCCTGTACAGCCCCTCCCAGCCTCTGCATGTTGAAGGGTCACCACAGTAAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp AGATGGCTTCTATCCATGCTACAGCCCTTACTGTGGTaGCCCTTCAACATGCAGAGGCTGGGAGGGGCTGTA +
Preference number: 3 (lower is better)
Translates to: RWLLSMLQPLLW*PFNMQRLGGAV
Trigger: TACAGCCCCTCCCAGCCTCTGCATGTTGAAGGGTCACCACAGTAAGGGCTGTAGCATGGATAGAAGCCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 72 bp GGGGACATGGGTAGGCCAAGGACCCTTCTTGGCTCCTaGGTCCTGAGTTTGGACACTCAAAATCCAAATCCT +
Preference number: 3 (lower is better)
Translates to: GDMGRPRTLLGS*VLSLDTQNPNP
Trigger: AGGATTTGGATTTTGAGTGTCCAAACTCAGGACCCAGGAGCCAAGAAGGGTCCTTGGCCTACCCATGTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp GCAAGGCGTGGAGGAGTGCAGGTAACTGTAGTCCGTTaGGGGACCTTATGGCACCTGTGGTTTATAAACAGC +
Preference number: 3 (lower is better)
Translates to: ARRGGVQVTVVR*GTLWHLWFINS
Trigger: GCTGTTTATAAACCACAGGTGCCATAAGGTCCCCCAACGGACTACAGTTACCTGCACTCCTCCACGCCTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 72 bp AGAGAACTGTGCAGTTGTGCGACTTTGGTGCTAGCCTaGGCTCAGGGAACTTTGCGAGGTGGGTTTTCTGGA +
Preference number: 3 (lower is better)
Translates to: RELCSCATLVLA*AQGTLRGGFSG
Trigger: TCCAGAAAACCCACCTCGCAAAGTTCCCTGAGCTCAGGCTAGCACCAAAGTCGCACAACTGCACAGTTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp TCTAAGTCCAGCAGCCACACCCCAGGGATGCAGGGATaGACAACGGTAGAGGCTACAAATACAGTGCATCTT +
Preference number: 3 (lower is better)
Translates to: SKSSSHTPGMQG*TTVEATNTVHL
Trigger: AAGATGCACTGTATTTGTAGCCTCTACCGTTGTCCATCCCTGCATCCCTGGGGTGTGGCTGCTGGACTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CAA 90 bp GCTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTCTGTCTGACTATAGCTaGCTTGAGAGGAGAGTGAGA +
Preference number: 3 (lower is better)
Translates to: AVGRLGCARSMLIHRPPALSDYS*LERRVR
Trigger: TCTCACTCTCCTCTCAAGCAAGCTATAGTCAGACAG...AGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 72 bp AAAACATGGATCACTAGGTCCAGACCCCAGAGTTTCTaGTCCAGTGGGTCTGGGTTGGAGCCTAGGAATCCA +
Preference number: 3 (lower is better)
Translates to: KTWITRSRPQSF*SSGSGLEPRNP
Trigger: TGGATTCCTAGGCTCCAACCCAGACCCACTGGATCAGAAACTCTGGGGTCTGGACCTAGTGATCCATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 72 bp AGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTaGACCAATGTGAGCTCAGCAACCCAAGGCTGCCAT +
Preference number: 3 (lower is better)
Translates to: SGVLCLWLLAWN*TNVSSATQGCH
Trigger: ATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR TCA 72 bp TGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATaGTCTAAGTCCAGCAGCCACACCCCAGGGATGCAG +
Preference number: 3 (lower is better)
Translates to: CLQRVIKGYTLP*SKSSSHTPGMQ
Trigger: CTGCATCCCTGGGGTGTGGCTGCTGGACTTAGATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR GCA 72 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTaGGTGGAATTGAACCAATGTGAGCTCAGCAACCCA +
Preference number: 3 (lower is better)
Translates to: LRTQWSSLLVAP*VELNQCELSNP
Trigger: TGGGTTGCTGAGCTCACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR-3UTR CAA 90 bp GCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGATCTTGTGGGGCTGCAGCTaGGGCAACAACATTGACATT +
Preference number: 3 (lower is better)
Translates to: AGQSLFAKSYQGIHPAMILWGCS*GNNIDI
Trigger: AATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAA...GATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp GTGTCACCATGCCAGGTTTATACAGCCCTGGAAGCTTaGACCAAGGGCTTTGTGTATGCTAAGCAAACCCTC +
Preference number: 3 (lower is better)
Translates to: VSPCQVYTALEA*TKGFVYAKQTL
Trigger: GAGGGTTTGCTTAGCATACACAAAGCCCTTGGTTCAAGCTTCCAGGGCTGTATAAACCTGGCATGGTGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 72 bp AAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTaGCATGATCTAAGTCCAGCAGCCACACCCCAGGGA +
Preference number: 3 (lower is better)
Translates to: KSVCKELSRDTP*HDLSPAATPQG
Trigger: TCCCTGGGGTGTGGCTGCTGGACTTAGATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CAA 90 bp CGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACTTGAACCAAGGGCTTaGTGTATGCTAAGCAAACCC +
Preference number: 3 (lower is better)
Translates to: RLPLTNQTYPNFHPDKPQLEPRA*CMLSKP
Trigger: GGGTTTGCTTAGCATACACAAAGCCCTTGGTTCAAG...TTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp GGAGTGCAGGTAACTGTAGTCCGTTGGGGGACCTTATaGCACCTGTGGTTTATAAACAGCTTTAGTAACGAG +
Preference number: 3 (lower is better)
Translates to: GVQVTVVRWGTL*HLWFINSFSNE
Trigger: CTCGTTACTAAAGCTGTTTATAAACCACAGGTGCCATAAGGTCCCCCAACGGACTACAGTTACCTGCACTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp ATAGGCATGTGTCACCATGCCAGGTTTATACAGCCCTaGAAGCTTGAACCAAGGGCTTTGTGTATGCTAAGC +
Preference number: 3 (lower is better)
Translates to: IGMCHHARFIQP*KLEPRALCMLS
Trigger: GCTTAGCATACACAAAGCCCTTGGTTCAAGCTTCCAGGGCTGTATAAACCTGGCATGGTGACACATGCCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR CAA 90 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAACTGGTTAGTGAGAAATaGCTCACTGGTAGTGGTTTC +
Preference number: 3 (lower is better)
Translates to: LRTQWSSLLVAPCVELNQLVSEK*LTGSGF
Trigger: GAAACCACTACCAGTGAGCAATTTCTCACTAACCAG...TTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR CAA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGTGGAAGGGAAGAAAGTaGCCTATTCTTCATAGGATC +
Preference number: 3 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMWKGRK*PILHRI
Trigger: GATCCTATGAAGAATAGGCAACTTTCTTCCCTTCCA...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp GAAGGTCTCGGGACTACCGATGAGGGAACTTGTCAATaGGCAGTGCTGTGTAAGACATGCTTCCTAAAGATA +
Preference number: 3 (lower is better)
Translates to: EGLGTTDEGTCQ*AVLCKTCFLKI
Trigger: TATCTTTAGGAAGCATGTCTTACACAGCACTGCTCATTGACAAGTTCCCTCATCGGTAGTCCCGAGACCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 72 bp TTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAATGTaGGCTCAGCAACCCAAGGCTGCCATATTTACAGTA +
Preference number: 3 (lower is better)
Translates to: FACGSLRGIEPM*AQQPKAAIFTV
Trigger: TACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR CCA 72 bp TTCAAAGGAAAAATGCCCTACCTTCTGAGGACACAGTaGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTG +
Preference number: 3 (lower is better)
Translates to: FKGKMPYLLRTQ*SSLLVAPCVEL
Trigger: CAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR-3UTR CAA 90 bp AGGGTGTTATATATCCTAGACTGGCCTCAAATTCACTATGTAGCTGAGGATGACGGAAAACAATCCACTTaGGAAAGGAGCCCCCAAGAG +
Preference number: 3 (lower is better)
Translates to: RVLYILDWPQIHYVAEDDGKQST*ERSPQE
Trigger: CTCTTGGGGGCTCCTTTCCAAAGTGGATTGTTTTCC...GTCATCCTCAGCTACATAGTGAATTTGAGGCCAGTCTAGGATATATAACACCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR CAA 90 bp AACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACCCTGTGAGATACAGTaGAACAGAATGGACAGACGG +
Preference number: 3 (lower is better)
Translates to: NQCELSNPRLPYLQYLSTPCEIQ*NRMDRR
Trigger: CCGTCTGTCCATTCTGTTCAACTGTATCTCACAGGG...TGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR-3UTR CAA 90 bp TACAGGAAAGGGATAGAAAGGGACCTGACAAAGTTCAACCTAAAGGGCACTCCCCACAGTCTTACAGGATaGAACACATCTATGAGCACA +
Preference number: 3 (lower is better)
Translates to: YRKGIERDLTKFNLKGTPHSLTG*NTSMST
Trigger: TGTGCTCATAGATGTGTTCAATCCTGTAAGACTGTG...GGGAGTGCCCTTTAGGTTGAACTTTGTCAGGTCCCTTTCTATCCCTTTCCTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CAA 90 bp TCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTGGCTTTACAGCTTCTTCTGCTaGCTTCTGAACCTGACTACA +
Preference number: 3 (lower is better)
Translates to: SSSHRTISMGLDLMGSWLYSFFC*LLNLTT
Trigger: TGTAGTCAGGTTCAGAAGCAAGCAGAAGAAGCTGTA...AAGCCAGGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CAA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCCCTTCCAGAATATACTaGGGAAATGGAGGGAAGGGG +
Preference number: 3 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSPSRIY*GNGGKG
Trigger: CCCCTTCCCTCCATTTCCCAAGTATATTCTGGAAGG...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp ATAATCCATCTTCATAGTCTCCAACACGTCTCCCTCTaGCCAACCAAACTTACCCCAACTTCCATCCTGACA +
Preference number: 3 (lower is better)
Translates to: IIHLHSLQHVSL*PTKLTPTSILT
Trigger: TGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGGAGACTATGAAGATGGATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR TCA 72 bp TTGTGGGGCTGCAGCTTGGGCAACAACATTGACATTTaGGGAGCTCTAATGACTGACCTTCTATCAAGAGAA +
Preference number: 3 (lower is better)
Translates to: LWGCSLGNNIDI*GALMTDLLSRE
Trigger: TTCTCTTGATAGAAGGTCAGTCATTAGAGCTCCTCAAATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp GTTCAACCTAAAGGGCACTCCCACAGCCTGGCTCTATaGATGCATAAAAGCCTTCCAGAATATACTTGGGAA +
Preference number: 3 (lower is better)
Translates to: VQPKGHSHSLAL*MHKSLPEYTWE
Trigger: TTCCCAAGTATATTCTGGAAGGCTTTTATGCATTCATAGAGCCAGGCTGTGGGAGTGCCCTTTAGGTTGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR GCA 72 bp TTGGACACTCAAAATCCAAATCCTATTGTAGATTGTTaGCCCCCTTCCCTCCCAGTTGCTGTGGGAGAAAAA +
Preference number: 3 (lower is better)
Translates to: LDTQNPNPIVDC*PPSLPVAVGEK
Trigger: TTTTTCTCCCACAGCAACTGGGAGGGAAGGGGGGCAACAATCTACAATAGGATTTGGATTTTGAGTGTCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 72 bp GATGCCAATCACGTCCTTGGCTATCCTCAAGGCAAATaGTTTTGTTTAAAGAGCAGCCATGGAGATCGTTTC +
Preference number: 3 (lower is better)
Translates to: DANHVLGYPQGK*FCLKSSHGDRF
Trigger: GAAACGATCTCCATGGCTGCTCTTTAAACAAAAGCATTTGCCTTGAGGATAGCCAAGGACGTGATTGGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 72 bp CATGCATGCAAAATAAGAGGCGGGGCAAAGTCTGTTTaGAAAGAGTTATCAAGGGATACACCCTGCCATGAT +
Preference number: 3 (lower is better)
Translates to: HACKIRGGAKSV*KELSRDTPCHD
Trigger: ATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTCTTATTTTGCATGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR GCA 72 bp AACCTAAAGGGCACTCCCACAGCCTGGCTCTATGAATaGATAAAAGCCTTCCAGAATATACTTGGGAAATGG +
Preference number: 3 (lower is better)
Translates to: NLKGTPTAWLYE*IKAFQNILGKW
Trigger: CCATTTCCCAAGTATATTCTGGAAGGCTTTTATGCATTCATAGAGCCAGGCTGTGGGAGTGCCCTTTAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 72 bp CTGAGTCAGAGTATGTTGAAGGAAAACAATCCACTTTaGAAAGGAGCCCCCAAGAGCCCATTATTCCTGTTG +
Preference number: 3 (lower is better)
Translates to: LSQSMLKENNPL*KGAPKSPLFLL
Trigger: CAACAGGAATAATGGGCTCTTGGGGGCTCCTTTCCAAAGTGGATTGTTTTCCTTCAACATACTCTGACTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp TCCTCAAGGCAAATGCTTTTGTTTAAAGAGCAGCCATaGAGATCGTTTCTGACCAAATGCAGAGGCAAGAAC +
Preference number: 3 (lower is better)
Translates to: SSRQMLLFKEQP*RSFLTKCRGKN
Trigger: GTTCTTGCCTCTGCATTTGGTCAGAAACGATCTCCATGGCTGCTCTTTAAACAAAAGCATTTGCCTTGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CCA 72 bp CTGACAAAGTTCAACCTAAAGGGCACTCCCACAGCCTaGCTCTATGAATGCATAAAAGCCTTCCAGAATATA +
Preference number: 3 (lower is better)
Translates to: LTKFNLKGTPTA*LYECIKAFQNI
Trigger: TATATTCTGGAAGGCTTTTATGCATTCATAGAGCCAGGCTGTGGGAGTGCCCTTTAGGTTGAACTTTGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 72 bp AAGGAGATAAGAGAGAATGAGTGTGTAACCTACATTTaGGTCTCTGGCAGATGGCTTCTATCCATGCTACAG +
Preference number: 3 (lower is better)
Translates to: KEIRENECVTYI*VSGRWLLSMLQ
Trigger: CTGTAGCATGGATAGAAGCCATCTGCCAGAGACCCAAATGTAGGTTACACACTCATTCTCTCTTATCTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp GCTCTCAGCCTGTGGGTGTTTGTTTTGAACCAGGGATaGGCCATGTTACAGAAGATGGAGTTGATAAATTAT +
Preference number: 3 (lower is better)
Translates to: ALSLWVFVLNQG*AMLQKMELINY
Trigger: ATAATTTATCAACTCCATCTTCTGTAACATGGCTCATCCCTGGTTCAAAACAAACACCCACAGGCTGAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 72 bp TTTCTTTTTGGTTCAAAGGAAAAATGCCCTACCTTCTaGGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTT +
Preference number: 3 (lower is better)
Translates to: FLFGSKEKCPTF*GHSGVLCLWLL
Trigger: AAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTTGAACCAAAAAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR TCA 72 bp AGAAGCTTGAGTAGAAACCAAGGAGATAAGAGAGAATaGGTGTGTAACCTACATTTGGGTCTCTGGCAGATG +
Preference number: 3 (lower is better)
Translates to: RSLSRNQGDKRE*VCNLHLGLWQM
Trigger: CATCTGCCAGAGACCCAAATGTAGGTTACACACTCATTCTCTCTTATCTCCTTGGTTTCTACTCAAGCTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR GCA 72 bp ACGGAGCTAGGAAATATCATCATACACTTTGGTACATaGACAGGGTGCTCAAGCTGCTTTTCTTTTGCTCTA +
Preference number: 3 (lower is better)
Translates to: TELGNIIIHFGT*TGCSSCFSFAL
Trigger: TAGAGCAAAAGAAAAGCAGCTTGAGCACCCTGTGCATGTACCAAAGTGTATGATGATATTTCCTAGCTCCGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CCA 72 bp GTAACTGTAGTCCGTTGGGGGACCTTATGGCACCTGTaGTTTATAAACAGCTTTAGTAACGAGTATTCCAAA +
Preference number: 3 (lower is better)
Translates to: VTVVRWGTLWHL*FINSFSNEYSK
Trigger: TTTGGAATACTCGTTACTAAAGCTGTTTATAAACCACAGGTGCCATAAGGTCCCCCAACGGACTACAGTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR-3UTR CAA 90 bp TTACCCGATCTTTATGAGAAGAGTTTCTATGCCTTTTCAGAGAAATGGAAGCTGACCGGTCTTCATTTGTaGCCGTCAGTAGTAGTGACA +
Preference number: 3 (lower is better)
Translates to: LPDLYEKSFYAFSEKWKLTGLHL*PSVVVT
Trigger: TGTCACTACTACTGACGGCAACAAATGAAGACCGGT...CAGCTTCCATTTCTCTGAAAAGGCATAGAAACTCTTCTCATAAAGATCGGGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp GGTGACATTAACATTGCTTGTCTGACACACACATTCTaGGCAAATCTCTGTTCTGAAATGACGTTCCCTTCT +
Preference number: 3 (lower is better)
Translates to: GDINIACLTHTF*ANLCSEMTFPS
Trigger: AGAAGGGAACGTCATTTCAGAACAGAGATTTGCTCAGAATGTGTGTGTCAGACAAGCAATGTTAATGTCACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR GCA 72 bp ATCATACACTTTGGTACATGCACAGGGTGCTCAAGCTaGTTTTCTTTTGCTCTAGTTTGGTTTGACTTCTCT +
Preference number: 3 (lower is better)
Translates to: IIHFGTCTGCSS*FSFALVWFDFS
Trigger: AGAGAAGTCAAACCAAACTAGAGCAAAAGAAAAGCAGCTTGAGCACCCTGTGCATGTACCAAAGTGTATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR-3UTR CAA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGAGAAGCAACTCAACTCTaGGTTAATAGAGGAAGCAGA +
Preference number: 3 (lower is better)
Translates to: TVIRTTRFIEICGSQGTREATQL*VNRGSR
Trigger: TCTGCTTCCTCTATTAACCAAGAGTTGAGTTGCTTC...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
3UTR CCA 72 bp GACAGTGATAAGAACCACAAGATTTATAGAAATCTGTaGTTCACAGGGAACAAGACAAGAGGACTGAAAATG +
Preference number: 3 (lower is better)
Translates to: DSDKNHKIYRNL*FTGNKTRGLKM
Trigger: CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
3UTR TCA 72 bp TTGTCTGACACACACATTCTGAGCAAATCTCTGTTCTaGAATGACGTTCCCTTCTCTCTTTTAGAAGAAAAA +
Preference number: 3 (lower is better)
Translates to: LSDTHILSKSLF*NDVPFSLLEEK
Trigger: TTTTTCTTCTAAAAGAGAGAAGGGAACGTCATTTCAGAACAGAGATTTGCTCAGAATGTGTGTGTCAGACAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR TCA 72 bp TTATGTGATGGCAGGGGATTTATTACCCGATCTTTATaGGAAGAGTTTCTATGCCTTTTCAGAGAAATGGAA +
Preference number: 3 (lower is better)
Translates to: LCDGRGFITRSL*EEFLCLFREME
Trigger: TTCCATTTCTCTGAAAAGGCATAGAAACTCTTCTCATAAAGATCGGGTAATAAATCCCCTGCCATCACATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR TCA 72 bp AGAGATTGTAGATGCCAGCATAATAAAACACTACATTaGACCACACAGATTTATGATAAAACACGTAGAGGT +
Preference number: 3 (lower is better)
Translates to: RDCRCQHNKTLH*TTQIYDKTRRG
Trigger: ACCTCTACGTGTTTTATCATAAATCTGTGTGGTTCAATGTAGTGTTTTATTATGCTGGCATCTACAATCTCT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp TTGGAGCTGCTGGGTGTGGTGGCTCCTCTTTCCCAGCGAGCGAGCGGGAGGCTGTCAGGGGCACTCCTCTaGTGTGTGGGCTGTGATGAG +
Preference number: 4 (lower is better)
Translates to: LELLGVVAPLSQRASGRLSGALL*CVGCDE
Trigger: CTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGA...CAGCCTCCCGCTCGCTCGCTGGGAAAGAGGAGCCACCACACCCAGCAGCTCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CCA 90 bp GCTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTGTCGTGCGGCGTACCTaGCGATCAGCCTGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: AVGRLGCARSMLIHRPPAVVRRT*RSACVL
Trigger: AAGAACACAGGCTGATCGCCAGGTACGCCGCACGAC...AGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CACAACTGCATGCAGAACACCAGGTGTTCAGGTAAGGCAATCACCACTCAGAAAGCTGGGGGAAGAGCGTaGGGAGCTTGCCCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: HNCMQNTRCSGKAITTQKAGGRA*GACPLG
Trigger: ACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGC...TTTCTGAGTGGTGATTGCCTTACCTGAACACCTGGTGTTCTGCATGCAGTTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CCA 90 bp CGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAAGGCCTGCTGATGGTGTaGCTGGGGGAAGAGCGTGGG +
Preference number: 4 (lower is better)
Translates to: RLPLTNQTYPNFHPDKPQGLLMV*LGEERG
Trigger: CCCACGCTCTTCCCCCAGCCACACCATCAGCAGGCC...TTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GTGATTTCACAGAGGACGATGGGCAGGGGAAGAGAGATGAACGTTAAGACACGCTTCTGCTGCCAGTCGTaGGGCGTACCTGGCGATCAG +
Preference number: 4 (lower is better)
Translates to: VISQRTMGRGREMNVKTRFCCQS*GVPGDQ
Trigger: CTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAA...GCGTGTCTTAACGTTCATCTCTCTTCCCCTGCCCATCGTCCTCTGTGAAATCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR GCA 90 bp TCTCCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACTTCTGCTGCCAGTCGTaGGGCGTACCTGGCGATCAG +
Preference number: 4 (lower is better)
Translates to: SPTRLPLTNQTYPNFHPDFCCQS*GVPGDQ
Trigger: CTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAA...GTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GGGCTTCAGAGTATGACCCAGCCCAACGGTCATGATGCCCCTATCTCCAGAAAATCAGGGGCACTCCTCTaGTGTGTGGGCTGTGATGAG +
Preference number: 4 (lower is better)
Translates to: GLQSMTQPNGHDAPISRKSGALL*CVGCDE
Trigger: CTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGA...TTTTCTGGAGATAGGGGCATCATGACCGTTGGGCTGGGTCATACTCTGAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp CCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAGTGAGGGAGTCCTaGGGGGTGTGCGTTGGTGTG +
Preference number: 4 (lower is better)
Translates to: PSEDTVEFFACGSLRGIEPVRES*GVCVGV
Trigger: CACACCAACGCACACCCCGCAGGACTCCCTCACTGG...TTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTCGGCTACAGGACAGGGGTaGTTGAGTCTGGTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: VGRLGCARSMLIHRPPASATGQG*LSLVSV
Trigger: CACTGAGACCAGACTCAAGCACCCCTGTCCTGTAGC...CGAAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222726.2
3UTR CAA 72 bp TCACCCACCTCCCTGACCACAATGCTGTGGGGAGGCTaGGCTGTGCTAGATCAATGCTCATTCATAGGCCAC +
Preference number: 4 (lower is better)
Translates to: SPTSLTTMLWGG*AVLDQCSFIGH
Trigger: GTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAGCATTGTGGTCAGGGAGGTGGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
CDS-3UTR TCA 90 bp ATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAGGAGGGTCTGACATaGGCGTGTCCAAGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: MPYLLRTQWSSLLVAPCVEEGLT*ACPRSH
Trigger: ATGGCTTCTTGGACACGCTCATGTCAGACCCTCCTC...CACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AAAGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTTGGGGATCGGCCTGCTaGTGGTGTGGCTGGGGGAAG +
Preference number: 4 (lower is better)
Translates to: KGKMPYLLRTQWSSLLVAWGSAC*WCGWGK
Trigger: CTTCCCCCAGCCACACCATCAGCAGGCCGATCCCCA...AGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp GGTAGGTTTAATCATTTCTCAGAGGGACTTGGGGACATGGGTAGGCCAAGGACCGCTGGTCTGGGAACATaGGGTGCAAAGGTTCACGGC +
Preference number: 4 (lower is better)
Translates to: GRFNHFSEGLGDMGRPRTAGLGT*GAKVHG
Trigger: GCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGC...GGTCCTTGGCCTACCCATGTCCCCAAGTCCCTCTGAGAAATGATTAAACCTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CCA 90 bp GTTTGCTCTTGTGGGGCTGCAGCTTGGGCAACAACATTGACATTTGAGGAGCTCGCTGGTCTGGGAACATaGGGTGCAAAGGTTCACGGC +
Preference number: 4 (lower is better)
Translates to: VCSCGAAAWATTLTFEELAGLGT*GAKVHG
Trigger: GCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGC...GAGCTCCTCAAATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAAGAGCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp TTTTGTCTCGGCTACAGGACAGGGGTGCTTGAGTCTGGTCTCAGTGCTGACGTGCTTTTCAGGCTGGTCTaGGAACATGGGGTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: FCLGYRTGVLESGLSADVLFRLV*EHGVQR
Trigger: CCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAG...CACGTCAGCACTGAGACCAGACTCAAGCACCCCTGTCCTGTAGCCGAGACAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp GCTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTCCAGGTTTCCGGGAGTaGATTTGGGCTAGAAAAGCC +
Preference number: 4 (lower is better)
Translates to: AVGRLGCARSMLIHRPPAPGFRE*IWARKA
Trigger: GGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGG...AGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp CGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGGCGGGCCACGTTaGGTTCTATGTTTGGGTCCA +
Preference number: 4 (lower is better)
Translates to: RLPLTNQTYPNFHPDKPQPGGPR*VLCLGP
Trigger: TGGACCCAAACATAGAACTCAACGTGGCCCGCCTGG...TTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp GAGGCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGGAGGAGGGTCTGACATaGGCGTGTCCAAGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: EAGQSLFAKSYQGIHPAMEEGLT*ACPRSH
Trigger: ATGGCTTCTTGGACACGCTCATGTCAGACCCTCCTC...CATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp TCTCCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACCTCGGAGGCACGATGTaGGCCAAGTTGAGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: SPTRLPLTNQTYPNFHPDLGGTM*AKLSGF
Trigger: AAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAG...GTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp GGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTCTTGCAGCTCCACCGTaGATGTACCCAGGTTTCCGG +
Preference number: 4 (lower is better)
Translates to: GKMPYLLRTQWSSLLVAPLAAPP*MYPGFR
Trigger: CCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAG...AGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTCGAGAGTGTGTCGTTCATaGTGGTTACAGGTCTCGGAG +
Preference number: 4 (lower is better)
Translates to: VGRLGCARSMLIHRPPASRVCRS*WLQVSE
Trigger: CTCCGAGACCTGTAACCAGCATGAACGACACACTCT...CGAAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GCTCTCTCCACCACCGGATGGCATGTATCTTTCCTCATCTGTCTGACTATAGCTGAGGAGCCGGAGTTCTaGCAGCAAGGTTGGGTTCTG +
Preference number: 4 (lower is better)
Translates to: ALSTTGWHVSFLICLTIAEEPEF*QQGWVL
Trigger: CAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTC...AGCTATAGTCAGACAGATGAGGAAAGATACATGCCATCCGGTGGTGGAGAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR GCA 90 bp GCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGATCGAGGAGCCGGAGTTCTaGCAGCAAGGTTGGGTTCTG +
Preference number: 4 (lower is better)
Translates to: AGQSLFAKSYQGIHPAMIEEPEF*QQGWVL
Trigger: CAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTC...GATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp GGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCCTGTGAGATACAGTTGAGAGCGTGGGGAGCTTaGCCCCTGGGTCTTCAGGAG +
Preference number: 4 (lower is better)
Translates to: GCAIHGGIRKNHPCEIQLRAWGA*PLGLQE
Trigger: CTCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCT...CAACTGTATCTCACAGGGATGGTTCTTTCTTATCCCACCATGAATTGCACACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR GCA 90 bp TTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCCTGTCCAGTGAGGGAGTCCTaGGGGGTGTGCGTTGGTGTG +
Preference number: 4 (lower is better)
Translates to: FDRRGCAIHGGIRKNHPCPVRES*GVCVGV
Trigger: CACACCAACGCACACCCCGCAGGACTCCCTCACTGG...ACAGGGATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCGCTGGTCTGGGAACATaGGGTGCAAAGGTTCACGGC +
Preference number: 4 (lower is better)
Translates to: RKNALPSEDTVEFFACGSAGLGT*GAKVHG
Trigger: GCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGC...GGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp GGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTGTCGTGCGGCGTACCTaGCGATCAGCCTGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: GKMPYLLRTQWSSLLVAPVVRRT*RSACVL
Trigger: AAGAACACAGGCTGATCGCCAGGTACGCCGCACGAC...AGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTAACGCTGGGGGAAGAGCGTaGGGAGCTTGCCCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: CELSNPRLPYLQYLSTLNAGGRA*GACPLG
Trigger: ACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGC...GTTAAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
3UTR CAA 72 bp AGCAAGGCGTGGAGGAGTGCAGGTAACTGTAGTCCGTaGGGGGACCTTATGGCACCTGTGGTTTATAAACAG +
Preference number: 4 (lower is better)
Translates to: SKAWRSAGNCSP*GDLMAPVVYKQ
Trigger: CTGTTTATAAACCACAGGTGCCATAAGGTCCCCCAACGGACTACAGTTACCTGCACTCCTCCACGCCTTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGAGTTCAGCAGGAGACTaGTGGACTGCTCCACGTGGA +
Preference number: 4 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMSSAGD*WTAPRG
Trigger: TCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACT...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGTCTTCAGGAGCTTCATaGGACCTTCCAACTGGACCA +
Preference number: 4 (lower is better)
Translates to: MPYLLRTQWSSLLVAPCVSSGAS*DLPTGP
Trigger: TGGTCCAGTTGGAAGGTCTCATGAAGCTCCTGAAGA...CACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp CAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTTGGGGATCGGCCTGCTaGTGGTGTGGCTGGGGGAAG +
Preference number: 4 (lower is better)
Translates to: QCELSNPRLPYLQYLSTLWGSAC*WCGWGK
Trigger: CTTCCCCCAGCCACACCATCAGCAGGCCGATCCCCA...AAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp GAGGCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGCCTTCAGGAGCTTCATaGGACCTTCCAACTGGACCA +
Preference number: 4 (lower is better)
Translates to: EAGQSLFAKSYQGIHPAMPSGAS*DLPTGP
Trigger: TGGTCCAGTTGGAAGGTCTCATGAAGCTCCTGAAGG...CATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp GGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTGCTATGAGAACCTCCTaGATGGCCCCTCCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: GKMPYLLRTQWSSLLVAPAMRTS*MAPPEA
Trigger: TGCTTCTGGAGGGGCCATGCAGGAGGTTCTCATAGC...AGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAATGTGCAAACGCCTCTTaGACATCTCCGCCTACCCCA +
Preference number: 4 (lower is better)
Translates to: RLPLTNQTYPNFHPDKPQCANAS*TSPPTP
Trigger: TGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACA...TTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp ACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCAGCCCCCTGGGTTCCCTaGTTCAGTTCTTCTTCCTTC +
Preference number: 4 (lower is better)
Translates to: TRLPLTNQTYPNFHPDKPAPWVP*FSSSSF
Trigger: GAAGGAAGAAGAACTGAAGCAGGGAACCCAGGGGGC...TGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CTGGGTTTGCATTTAGAACAGGCCCCAAAAGTAAATTTGGAGAGCCAAGGAAAGAGAGCGTGGGGAGCTTaGCCCCTGGGTTCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: LGLHLEQAPKVNLESQGKRAWGA*PLGSLL
Trigger: AAGCAGGGAACCCAGGGGGCAAGCTCCCCACGCTCT...CTTTCCTTGGCTCTCCAAATTTACTTTTGGGGCCTGTTCTAAATGCAAACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTATGCTGTTCTGTAGGTaGAGAGTCGGATGCGATCCA +
Preference number: 4 (lower is better)
Translates to: LWGGLAVLDQCSFIGHQLMLFCR*RVGCDP
Trigger: TGGATCGCATCCGACTCTCCACCTACAGAACAGCAT...AAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp GAGGCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGATGAGACCTTCCAACTaGACCATCAGCTCTCTCCGG +
Preference number: 4 (lower is better)
Translates to: EAGQSLFAKSYQGIHPAMMRPSN*TISSLR
Trigger: CCGGAGAGAGCTGATGGTCCAGTTGGAAGGTCTCAT...CATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGAATCCTATACAGGGGGAGCTTGCCCCCTaGGTCTTCAGGAGCTTCATG +
Preference number: 4 (lower is better)
Translates to: LTPTSILTNHNQFLNPIQGELAP*VFRSFM
Trigger: CATGAAGCTCCTGAAGACCCAGGGGGCAAGCTCCCC...CTGTATAGGATTCAGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp GAGGCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGATGCGATCCAGATCTTaGGCCCTCATCTCTGCAAAC +
Preference number: 4 (lower is better)
Translates to: EAGQSLFAKSYQGIHPAMMRSRS*ALISAN
Trigger: GTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCAT...CATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp TGTGAGATACAGTTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCACCAGGCGGGCCACGTTaGGTTCTATGTTTGGGTCCA +
Preference number: 4 (lower is better)
Translates to: CEIQLNRMDRRMKPAGFAPGGPR*VLCLGP
Trigger: TGGACCCAAACATAGAACTCAACGTGGCCCGCCTGG...TGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTTAGAACAGGCTGGTGCTGGTTGCTATaGGAACCTCCTGCATGGCCC +
Preference number: 4 (lower is better)
Translates to: LNRMDRRMKPAGFAFRTGWCWLL*EPPAWP
Trigger: GGGCCATGCAGGAGGTTCTCATAGCAACCAGCACCA...GCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp GCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGATCCGATGTGAGCCAAGTTaGGTGGCTTTTCAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: AGQSLFAKSYQGIHPAMIRCEPS*VAFQAG
Trigger: ACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCG...GATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ACCAGCTTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATAAGGTTGGGTTCTGCTaGGCTTTCTCTGGCGTGGGC +
Preference number: 4 (lower is better)
Translates to: TSFDRRGCAIHGGIRKNHKVGFC*AFSGVG
Trigger: GCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTT...ATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTTAGAACAGGCCTTGCAGCTCCACCGTaGATGTACCCAGGTTTCCGG +
Preference number: 4 (lower is better)
Translates to: LNRMDRRMKPAGFAFRTGLAAPP*MYPGFR
Trigger: CCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAG...GCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GCACAGGATGGGTGGCATAGCTTATGTTATGTGATGGCAGGGGATTTATTACCCGCTATGAGAACCTCCTaGATGGCCCCTCCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: AQDGWHSLCYVMAGDLLPAMRTS*MAPPEA
Trigger: TGCTTCTGGAGGGGCCATGCAGGAGGTTCTCATAGC...GGGTAATAAATCCCCTGCCATCACATAACATAAGCTATGCCACCCATCCTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp TTTTGTCTCGGCTACAGGACAGGGGTGCTTGAGTCTGGTCTCAGTGCTGACGTGTCATTTGGTGCTGGTTaGTATGAGAACCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: FCLGYRTGVLESGLSADVSFGAG*YENLLH
Trigger: ATGCAGGAGGTTCTCATAGCAACCAGCACCAAATGA...CACGTCAGCACTGAGACCAGACTCAAGCACCCCTGTCCTGTAGCCGAGACAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GGATCTGAACAAAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACTTCTGCTGCCAGTCGTaGGGCGTACCTGGCGATCAG +
Preference number: 4 (lower is better)
Translates to: GSEQNLPKESQVVLPSQHFCCQS*GVPGDQ
Trigger: CTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAA...GTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTTTGTTCAGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp TTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTTAGAACAGGCGAGGAGCCGGAGTTCTaGCAGCAAGGTTGGGTTCTG +
Preference number: 4 (lower is better)
Translates to: LNRMDRRMKPAGFAFRTGEEPEF*QQGWVL
Trigger: CAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTC...GCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAAATTGGTGATGGAGTCTaGAGCCACCAGCAGGTCACT +
Preference number: 4 (lower is better)
Translates to: PSEDTVEFFACGSLRGIEIGDGV*SHQQVT
Trigger: AGTGACCTGCTGGTGGCTGCAGACTCCATCACCAAT...TTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAAAGCTCATTCTCCAGCTaGCGCACAGACTCGTTCTCA +
Preference number: 4 (lower is better)
Translates to: PTRLPLTNQTYPNFHPDKSSFSS*RTDSFS
Trigger: TGAGAACGAGTCTGTGCGGCAGCTGGAGAATGAGCT...TTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGTACTGTATCCCTCTaGCCTTCAGAAAGGCGGGAG +
Preference number: 4 (lower is better)
Translates to: GKMPYLLRTQWSSLLVAPCTVSL*PSERRE
Trigger: CTCCCGCCTTTCTGAAGGGCAGAGGGATACAGTACA...AGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGGTGAGCCAAGTTGAGTaGCTTTTCAGGCTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMVSQVE*LFRLVW
Trigger: CCAGACCAGCCTGAAAAGCCACTCAACTTGGCTCAC...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp AGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCGTGTGTCGTTCATGCTaGTTACAGGTCTCGGAGGCA +
Preference number: 4 (lower is better)
Translates to: RKNALPSEDTVEFFACGSVCRSC*LQVSEA
Trigger: TGCCTCCGAGACCTGTAACCAGCATGAACGACACAC...GGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAACACTCCTCTGCTGTGTaGGCTGTGATGAGGAGGATT +
Preference number: 4 (lower is better)
Translates to: LRTQWSSLLVAPCVELNQHSSAV*AVMRRI
Trigger: AATCCTCCTCATCACAGCCCACACAGCAGAGGAGTG...TTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGCACTCCTCTGCTGTGTaGGCTGTGATGAGGAGGATT +
Preference number: 4 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMHSSAV*AVMRRI
Trigger: AATCCTCCTCATCACAGCCCACACAGCAGAGGAGTG...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGTTCTCTGGCGTGGGCTaGGAAGCTTGCTCATGTTCT +
Preference number: 4 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMFSGVG*EACSCS
Trigger: AGAACATGAGCAAGCTTCCCAGCCCACGCCAGAGAA...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CACAACTGCATGCAGAACACCAGGTGTTCAGGTAAGGCAATCACCACTCAGAAAGAGCTTTCTCTGGCGTaGGCTGGGAAGCTTGCTCAT +
Preference number: 4 (lower is better)
Translates to: HNCMQNTRCSGKAITTQKELSLA*AGKLAH
Trigger: ATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTC...TTTCTGAGTGGTGATTGCCTTACCTGAACACCTGGTGTTCTGCATGCAGTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CCA 90 bp TCTCCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACTTCTGCCAGCAAGGTTaGGTTCTGCTGAGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: SPTRLPLTNQTYPNFHPDFCQQG*VLLSFL
Trigger: GAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAA...GTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp ACAAAGTTCAACCTAAAGGGCACTCCCACAGCCTGGCTCTATGAATGCATAAAACCAGGCGGGCCACGTTaGGTTCTATGTTTGGGTCCA +
Preference number: 4 (lower is better)
Translates to: TKFNLKGTPTAWLYECIKPGGPR*VLCLGP
Trigger: TGGACCCAAACATAGAACTCAACGTGGCCCGCCTGG...TTTTATGCATTCATAGAGCCAGGCTGTGGGAGTGCCCTTTAGGTTGAACTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp CTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTCGATGTGAGCCAAGTTaGGTGGCTTTTCAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: LTNQTYPNFHPDKPQPVPRCEPS*VAFQAG
Trigger: ACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCG...AGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp CAAACTGAAGCAGGAACATACATTAGAGGCCAAAGCAATGAGAAGGTCAGCAGGCTCGGAGGCACGATGTaGGCCAAGTTGAGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: QTEAGTYIRGQSNEKVSRLGGTM*AKLSGF
Trigger: AAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAG...CCTGCTGACCTTCTCATTGCTTTGGCCTCTAATGTATGTTCCTGCTTCAGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp CCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAATATTTGCATCGATGGTaGAGGAGATGTCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: PTRLPLTNQTYPNFHPDKYLHRW*RRCQGH
Trigger: GTGCCCCTGACATCTCCTTCACCATCGATGCAAATA...TTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTAACGTCTGGTCTCAGTGCTaGCGTGGAGCTGGTAGGCCT +
Preference number: 4 (lower is better)
Translates to: CELSNPRLPYLQYLSTLNVWSQC*RGAGRP
Trigger: AGGCCTACCAGCTCCACGTCAGCACTGAGACCAGAC...GTTAAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222726.2
CDS-3UTR GCA 90 bp TCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTGGCTTTTCCGGGTCAAAGGCTaGGAGCAGGAAGTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: SSSHRTISMGLDLMGSWLFRVKG*EQEVQQ
Trigger: CTGCTGAACTTCCTGCTCGCAGCCTTTGACCCGGAA...AAGCCAGGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp CTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTATCGAAATCCCATCATaGTCTCACTGTGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: LWGGLAVLDQCSFIGHQLIEIPS*SHCDSR
Trigger: CCTACTGTCACAGTGAGAGCATGATGGGATTTCGAT...AAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGATCTCTGGGAACATGGGGTaGAAAGGTTCACGGCTTGAA +
Preference number: 4 (lower is better)
Translates to: AGQSLFAKSYQGIHPAMISGNMG*KGSRLE
Trigger: TTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGA...GATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAAATGCTGTTCTGTAGGTaGAGAGTCGGATGCGATCCA +
Preference number: 4 (lower is better)
Translates to: LRTQWSSLLVAPCVELNQMLFCR*RVGCDP
Trigger: TGGATCGCATCCGACTCTCCACCTACAGAACAGCAT...TTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AAAGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTAGTGGCTTTTCAGGCTaGTCTGGGAACATGGGGTGC +
Preference number: 4 (lower is better)
Translates to: KGKMPYLLRTQWSSLLVASGFSG*SGNMGC
Trigger: GCACCCCATGTTCCCAGACCAGCCTGAAAAGCCACT...AGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTGGCTTGAGCTTTCTCTGGCGTaGGCTGGGAAGCTTGCTCAT +
Preference number: 4 (lower is better)
Translates to: SSSHRTISMGLDLMGSWLELSLA*AGKLAH
Trigger: ATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTC...AAGCCAGGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp ACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCATTCTGCCAGCAAGGTTaGGTTCTGCTGAGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: TRLPLTNQTYPNFHPDKPFCQQG*VLLSFL
Trigger: GAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAA...TGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTATGAGACCTTCCAACTaGACCATCAGCTCTCTCCGG +
Preference number: 4 (lower is better)
Translates to: LTNQTYPNFHPDKPQPVPMRPSN*TISSLR
Trigger: CCGGAGAGAGCTGATGGTCCAGTTGGAAGGTCTCAT...AGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AGTTTAATCACTTCAAAATATAACATGTCCCCAGGAGGTTCCAACACACACACAGGCCTGCTGATGGTGTaGCTGGGGGAAGAGCGTGGG +
Preference number: 4 (lower is better)
Translates to: SLITSKYNMSPGGSNTHTGLLMV*LGEERG
Trigger: CCCACGCTCTTCCCCCAGCCACACCATCAGCAGGCC...TGTGTGTGTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGATTAAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp GAGGCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGCTCAAGCATACATGGTaGGTTGTTCCGGAGCATGTT +
Preference number: 4 (lower is better)
Translates to: EAGQSLFAKSYQGIHPAMLKHTW*VVPEHV
Trigger: AACATGCTCCGGAACAACCCACCATGTATGCTTGAG...CATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CAA 72 bp TTCCTGTTGGTAGGTTTAATCATTTCTCAGAGGGACTaGGGGACATGGGTAGGCCAAGGACCCTTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: FLLVGLIISQRD*GTWVGQGPFLA
Trigger: AGCCAAGAAGGGTCCTTGGCCTACCCATGTCCCCAAGTCCCTCTGAGAAATGATTAAACCTACCAACAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp AATCCACCTGTGCAAAGAAATCAGAGAACTGTGCAGTaGTGCGACTTTGGTGCTAGCCTGAGCTCAGGGAAC +
Preference number: 4 (lower is better)
Translates to: NPPVQRNQRTVQ*CDFGASLSSGN
Trigger: GTTCCCTGAGCTCAGGCTAGCACCAAAGTCGCACAACTGCACAGTTCTCTGATTTCTTTGCACAGGTGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp TTTTGTCTCGGCTACAGGACAGGGGTGCTTGAGTCTGGTCTCAGTGCTGACGTGATCTTAACTTGTCCATaGTCTTTCCTCCACACAATG +
Preference number: 4 (lower is better)
Translates to: FCLGYRTGVLESGLSADVILTCP*SFLHTM
Trigger: CATTGTGTGGAGGAAAGATCATGGACAAGTTAAGAT...CACGTCAGCACTGAGACCAGACTCAAGCACCCCTGTCCTGTAGCCGAGACAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGCTGCTGTGGGTAGTTTaGGAACTTCCCGAAGGAATT +
Preference number: 4 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMLLWVV*ELPEGI
Trigger: AATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAG...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp GAGGCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGGAAACAGGATCTGGCTaGCTGTTCTGTGTAACCAAA +
Preference number: 4 (lower is better)
Translates to: EAGQSLFAKSYQGIHPAMETGSG*LFCVTK
Trigger: TTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTC...CATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTGGTGCTGGTTGCTATaGGAACCTCCTGCATGGCCC +
Preference number: 4 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSWCWLL*EPPAWP
Trigger: GGGCCATGCAGGAGGTTCTCATAGCAACCAGCACCA...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp TTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCCTGTAGGACATGGTATTGGTaGTGGAGTCTGCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: FDRRGCAIHGGIRKNHPCRTWYW*WSLQPP
Trigger: TGGTGGCTGCAGACTCCATCACCAATACCATGTCCT...ACAGGGATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TGTGAGATACAGTTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCAAGGACATGGTATTGGTaGTGGAGTCTGCAGCCACCA +
Preference number: 4 (lower is better)
Translates to: CEIQLNRMDRRMKPAGFARTWYW*WSLQPP
Trigger: TGGTGGCTGCAGACTCCATCACCAATACCATGTCCT...TGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp CCTGACAAACCACAACCAGTTCCTGAATCCTATACAGTAGATTTCACCCACCTCGCCAGATCCTCAAACTaGGGTCTCGAGAACTCGGAA +
Preference number: 4 (lower is better)
Translates to: PDKPQPVPESYTVDFTHLARSSN*GLENSE
Trigger: TTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGC...GAGGTGGGTGAAATCTACTGTATAGGATTCAGGAACTGGTTGTGGTTTGTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp ACCAGCTTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCTTCAGGAGCTTCATaGGACCTTCCAACTGGACCA +
Preference number: 4 (lower is better)
Translates to: TSFDRRGCAIHGGIRKNHPSGAS*DLPTGP
Trigger: TGGTCCAGTTGGAAGGTCTCATGAAGCTCCTGAAGG...ATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GTTTGCTCTTGTGGGGCTGCAGCTTGGGCAACAACATTGACATTTGAGGAGCTCTTGAGCCCTCATCTCTaGAAACAGCTGTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: VCSCGAAAWATTLTFEELLSPHL*KQLSSF
Trigger: GAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAA...GAGCTCCTCAAATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAAGAGCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp GTTTGCTCTTGTGGGGCTGCAGCTTGGGCAACAACATTGACATTTGAGGAGCTCCACAGCTCAGGGACTTaGTTAATGCATTCGTTAGCT +
Preference number: 4 (lower is better)
Translates to: VCSCGAAAWATTLTFEELHSSGT*LMHSLA
Trigger: AGCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTG...GAGCTCCTCAAATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAAGAGCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp ACAACTGCATGCAGAACACCAGGTGTTCAGGTAAGGCAATCACCACTCAGAAAGAGAGTGTGTCGTTCATaGTGGTTACAGGTCTCGGAG +
Preference number: 4 (lower is better)
Translates to: TTACRTPGVQVRQSPLRKRVCRS*WLQVSE
Trigger: CTCCGAGACCTGTAACCAGCATGAACGACACACTCT...CTTTCTGAGTGGTGATTGCCTTACCTGAACACCTGGTGTTCTGCATGCAGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR GCA 90 bp CAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTTCAGGGGCACTCCTCTaGTGTGTGGGCTGTGATGAG +
Preference number: 4 (lower is better)
Translates to: QCELSNPRLPYLQYLSTLSGALL*CVGCDE
Trigger: CTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGA...AAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTGCAATCAGCTGCCTTTaGTGTTTATTTGCATCGATG +
Preference number: 4 (lower is better)
Translates to: LWGGLAVLDQCSFIGHQLAISCL*CLFASM
Trigger: CATCGATGCAAATAAACAGCAAAGGCAGCTGATTGC...AAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCACCTTCTCGAACTTTGTaGAAACGCCTCTTGCACATC +
Preference number: 4 (lower is better)
Translates to: LPLTNQTYPNFHPDKPQPPSRTL*KRLLHI
Trigger: GATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGG...TGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGGGAGAAACAGGATCTaGCTGACTGTTCTGTGTAAC +
Preference number: 4 (lower is better)
Translates to: LPLTNQTYPNFHPDKPQPGRNRI*LTVLCN
Trigger: GTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCC...TGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TGTGAGATACAGTTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCAGTGTGTCGTTCATGCTaGTTACAGGTCTCGGAGGCA +
Preference number: 4 (lower is better)
Translates to: CEIQLNRMDRRMKPAGFAVCRSC*LQVSEA
Trigger: TGCCTCCGAGACCTGTAACCAGCATGAACGACACAC...TGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TGTGAGATACAGTTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATCTCTCCGGCTCTCCTaGAGAGCAGACATTCTCTGT +
Preference number: 4 (lower is better)
Translates to: CEIQLNRMDRRMKPAGFASLRLS*RADILC
Trigger: ACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGA...TGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp ACCAGCTTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCAGGTTTCCGGGAGTaGATTTGGGCTAGAAAAGCC +
Preference number: 4 (lower is better)
Translates to: TSFDRRGCAIHGGIRKNHPGFRE*IWARKA
Trigger: GGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGG...ATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
3UTR CAA 72 bp CTTTGGAAAGGAGCCCCCAAGAGCCCATTATTCCTGTaGGTAGGTTTAATCATTTCTCAGAGGGACTTGGGG +
Preference number: 4 (lower is better)
Translates to: LWKGAPKSPLFL*VGLIISQRDLG
Trigger: CCCCAAGTCCCTCTGAGAAATGATTAAACCTACCAACAGGAATAATGGGCTCTTGGGGGCTCCTTTCCAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp GGTGGGATAAGAAAGAACCATCCCTGTGAGATACAGTaGAACAGAATGGACAGACGGATGAAACCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: GGIRKNHPCEIQ*NRMDRRMKPAG
Trigger: CCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACAGGGATGGTTCTTTCTTATCCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR CAA 72 bp GAAGCTGAACTAACTGAATGTTCACAGTGTGGAGGTTaGCTCTTGTGGGGCTGCAGCTTGGGCAACAACATT +
Preference number: 4 (lower is better)
Translates to: EAELTECSQCGG*LLWGCSLGNNI
Trigger: AATGTTGTTGCCCAAGCTGCAGCCCCACAAGAGCAAACCTCCACACTGTGAACATTCAGTTAGTTCAGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ACCAGCTTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATATGCGATCCAGATCTTaGGCCCTCATCTCTGCAAAC +
Preference number: 4 (lower is better)
Translates to: TSFDRRGCAIHGGIRKNHMRSRS*ALISAN
Trigger: GTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCAT...ATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACCCAGGCGGGCCACGTTaGGTTCTATGTTTGGGTCCA +
Preference number: 4 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDPGGPR*VLCLGP
Trigger: TGGACCCAAACATAGAACTCAACGTGGCCCGCCTGG...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp CATTTAGAACAGGCCCCAAAAGTAAATTTGGAGAGCCAAGGAAAGAAATCCACCAGTTCAGCAGGAGACTaGTGGACTGCTCCACGTGGA +
Preference number: 4 (lower is better)
Translates to: HLEQAPKVNLESQGKKSTSSAGD*WTAPRG
Trigger: TCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACT...GGTGGATTTCTTTCCTTGGCTCTCCAAATTTACTTTTGGGGCCTGTTCTAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTAACAGTTCAGCAGGAGACTaGTGGACTGCTCCACGTGGA +
Preference number: 4 (lower is better)
Translates to: CELSNPRLPYLQYLSTLNSSAGD*WTAPRG
Trigger: TCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACT...GTTAAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp ACAACTGCATGCAGAACACCAGGTGTTCAGGTAAGGCAATCACCACTCAGAAAGCTGCTGTGGGTAGTTTaGGAACTTCCCGAAGGAATT +
Preference number: 4 (lower is better)
Translates to: TTACRTPGVQVRQSPLRKLLWVV*ELPEGI
Trigger: AATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAG...CTTTCTGAGTGGTGATTGCCTTACCTGAACACCTGGTGTTCTGCATGCAGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp AGGGTGTTATATATCCTAGACTGGCCTCAAATTCACTATGTAGCTGAGGATGACCTGTGGAGGAGGGTCTaGCATGAGCGTGTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: RVLYILDWPQIHYVAEDDLWRRV*HERVQE
Trigger: TTCTTGGACACGCTCATGTCAGACCCTCCTCCACAG...GTCATCCTCAGCTACATAGTGAATTTGAGGCCAGTCTAGGATATATAACACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp CAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTCTGTGGAGGAGGGTCTaGCATGAGCGTGTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: QCELSNPRLPYLQYLSTLLWRRV*HERVQE
Trigger: TTCTTGGACACGCTCATGTCAGACCCTCCTCCACAG...AAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGTGGTGCTGGTTGCTATaGGAACCTCCTGCATGGCCC +
Preference number: 4 (lower is better)
Translates to: NHKIYRNLWFTGNKTRGLWCWLL*EPPAWP
Trigger: GGGCCATGCAGGAGGTTCTCATAGCAACCAGCACCA...CAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp AAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGAATCCTATACTCGGAGGCACGATGTaGGCCAAGTTGAGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: KLTPTSILTNHNQFLNPILGGTM*AKLSGF
Trigger: AAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAG...TATAGGATTCAGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CAACAAAATCCACCTGTGCAAAGAAATCAGAGAACTGTGCAGTTGTGCGACTTTTTCCGGGTCAAAGGCTaGGAGCAGGAAGTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: QQNPPVQRNQRTVQLCDFFRVKG*EQEVQQ
Trigger: CTGCTGAACTTCCTGCTCGCAGCCTTTGACCCGGAA...AAAGTCGCACAACTGCACAGTTCTCTGATTTCTTTGCACAGGTGGATTTTGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR GCA 90 bp TTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTTTCCGGGTCAAAGGCTaGGAGCAGGAAGTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: LNQCELSNPRLPYLQYLSFRVKG*EQEVQQ
Trigger: CTGCTGAACTTCCTGCTCGCAGCCTTTGACCCGGAA...AGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAAATCGAAATCCCATCATaGTCTCACTGTGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: LRTQWSSLLVAPCVELNQIEIPS*SHCDSR
Trigger: CCTACTGTCACAGTGAGAGCATGATGGGATTTCGAT...TTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp TTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTGCTATGAGAACCTCCTaGATGGCCCCTCCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: LNQCELSNPRLPYLQYLSAMRTS*MAPPEA
Trigger: TGCTTCTGGAGGGGCCATGCAGGAGGTTCTCATAGC...AGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp TTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTTAGAACAGGCTCTGGGAACATGGGGTaGAAAGGTTCACGGCTTGAA +
Preference number: 4 (lower is better)
Translates to: LNRMDRRMKPAGFAFRTGSGNMG*KGSRLE
Trigger: TTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGA...GCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CATTTAGAACAGGCCCCAAAAGTAAATTTGGAGAGCCAAGGAAAGAAATCCACCTGTGCAAACGCCTCTTaGACATCTCCGCCTACCCCA +
Preference number: 4 (lower is better)
Translates to: HLEQAPKVNLESQGKKSTCANAS*TSPPTP
Trigger: TGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACA...GGTGGATTTCTTTCCTTGGCTCTCCAAATTTACTTTTGGGGCCTGTTCTAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TACAGGAAAGGGATAGAAAGGGACCTGACAAAGTTCAACCTAAAGGGCACTCCCGGGAGAAACAGGATCTaGCTGACTGTTCTGTGTAAC +
Preference number: 4 (lower is better)
Translates to: YRKGIERDLTKFNLKGTPGRNRI*LTVLCN
Trigger: GTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCC...GGGAGTGCCCTTTAGGTTGAACTTTGTCAGGTCCCTTTCTATCCCTTTCCTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp TCTTACAGGATTGAACACATCTATGAGCACAGGATGGGTGGCATAGCTTATGTTAGTGGCTTTTCAGGCTaGTCTGGGAACATGGGGTGC +
Preference number: 4 (lower is better)
Translates to: SYRIEHIYEHRMGGIAYVSGFSG*SGNMGC
Trigger: GCACCCCATGTTCCCAGACCAGCCTGAAAAGCCACT...AACATAAGCTATGCCACCCATCCTGTGCTCATAGATGTGTTCAATCCTGTAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp AACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACAGAGCTTTCTCTGGCGTaGGCTGGGAAGCTTGCTCAT +
Preference number: 4 (lower is better)
Translates to: NQCELSNPRLPYLQYLSTELSLA*AGKLAH
Trigger: ATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTC...TGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTGGCTTTTCTGCCAGCAAGGTTaGGTTCTGCTGAGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: SSSHRTISMGLDLMGSWLFCQQG*VLLSFL
Trigger: GAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAA...AAGCCAGGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp AAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACAAAACCGGTCTTCTCTCCGGCTCTCCTaGAGAGCAGACATTCTCTGT +
Preference number: 4 (lower is better)
Translates to: KPSQGITSCSPFSTQNRSSLRLS*RADILC
Trigger: ACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGA...AGACCGGTTTTGTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp CTGGGTTTGCATTTAGAACAGGCCCCAAAAGTAAATTTGGAGAGCCAAGGAAAGATGCGATCCAGATCTTaGGCCCTCATCTCTGCAAAC +
Preference number: 4 (lower is better)
Translates to: LGLHLEQAPKVNLESQGKMRSRS*ALISAN
Trigger: GTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCAT...CTTTCCTTGGCTCTCCAAATTTACTTTTGGGGCCTGTTCTAAATGCAAACCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TGTGAGATACAGTTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCACTGCTGTGGGTAGTTTaGGAACTTCCCGAAGGAATT +
Preference number: 4 (lower is better)
Translates to: CEIQLNRMDRRMKPAGFALLWVV*ELPEGI
Trigger: AATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAG...TGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACGAGGAGGGTCTGACATaGGCGTGTCCAAGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDEEGLT*ACPRSH
Trigger: ATGGCTTCTTGGACACGCTCATGTCAGACCCTCCTC...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp GAGCAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGATGGTGCTGGTTGCTATaGGAACCTCCTGCATGGCCC +
Preference number: 4 (lower is better)
Translates to: EQTSVLNYIATVWLMHIRWCWLL*EPPAWP
Trigger: GGGCCATGCAGGAGGTTCTCATAGCAACCAGCACCA...TCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGAATCCTATACGATGTGAGCCAAGTTaGGTGGCTTTTCAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: KLTPTSILTNHNQFLNPIRCEPS*VAFQAG
Trigger: ACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCG...TATAGGATTCAGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGCTCGGAGGCACGATGTaGGCCAAGTTGAGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: NHKIYRNLWFTGNKTRGLLGGTM*AKLSGF
Trigger: AAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAG...CAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp AAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACAAAACCGGTCTTATTTGCATCGATGGTaGAGGAGATGTCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: KPSQGITSCSPFSTQNRSYLHRW*RRCQGH
Trigger: GTGCCCCTGACATCTCCTTCACCATCGATGCAAATA...AGACCGGTTTTGTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ATGAACCTTCCCTGCCTTATTATAGATCATCCGATAATCCATCTTCATAGTCTCAAGGTTGGGTTCTGCTaGGCTTTCTCTGGCGTGGGC +
Preference number: 4 (lower is better)
Translates to: MNLPCLIIDHPIIHLHSLKVGFC*AFSGVG
Trigger: GCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTT...GAGACTATGAAGATGGATTATCGGATGATCTATAATAAGGCAGGGAAGGTTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TTACCCGATCTTTATGAGAAGAGTTTCTATGCCTTTTCAGAGAAATGGAAGCTGAAGGTTGGGTTCTGCTaGGCTTTCTCTGGCGTGGGC +
Preference number: 4 (lower is better)
Translates to: LPDLYEKSFYAFSEKWKLKVGFC*AFSGVG
Trigger: GCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTT...CAGCTTCCATTTCTCTGAAAAGGCATAGAAACTCTTCTCATAAAGATCGGGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp CAACAAAATCCACCTGTGCAAAGAAATCAGAGAACTGTGCAGTTGTGCGACTTTCTTCTCAGAGGTCGGTaGTGGAGCCAGATCCTCAAA +
Preference number: 4 (lower is better)
Translates to: QQNPPVQRNQRTVQLCDFLLRGR*WSQILK
Trigger: TTTGAGGATCTGGCTCCATCACCGACCTCTGAGAAG...AAAGTCGCACAACTGCACAGTTCTCTGATTTCTTTGCACAGGTGGATTTTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp GCACAGGATGGGTGGCATAGCTTATGTTATGTGATGGCAGGGGATTTATTACCCTTCATCAAGCCGGTTTaGACTCTCAAGCATACATGG +
Preference number: 4 (lower is better)
Translates to: AQDGWHSLCYVMAGDLLPFIKPV*TLKHTW
Trigger: CCATGTATGCTTGAGAGTTCAAACCGGCTTGATGAA...GGGTAATAAATCCCCTGCCATCACATAACATAAGCTATGCCACCCATCCTGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACAGGTGGAGAGTCGGATaGGATCCAGATCTTGAGCCC +
Preference number: 4 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDRWRVG*DPDLEP
Trigger: GGGCTCAAGATCTGGATCGCATCCGACTCTCCACCT...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp CTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCACCACCAGGTGCAAATTaGATTTCTTCTGCACAAATC +
Preference number: 4 (lower is better)
Translates to: LPLTNQTYPNFHPDKPQPPPGAN*ISSAQI
Trigger: GATTTGTGCAGAAGAAATGCAATTTGCACCTGGTGG...TGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTTCCGGGTCAAAGGCTaGGAGCAGGAAGTTCAGCAG +
Preference number: 4 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDFRVKG*EQEVQQ
Trigger: CTGCTGAACTTCCTGCTCGCAGCCTTTGACCCGGAA...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp CTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGACATTTTCTACATTTaGCAGTCGGTGCAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: LTNQTYPNFHPDKPQPVPDIFYI*QSVQKR
Trigger: CCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTC...AGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp GCACAGGATGGGTGGCATAGCTTATGTTATGTGATGGCAGGGGATTTATTACCCTCATTTGGTGCTGGTTaGTATGAGAACCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: AQDGWHSLCYVMAGDLLPSFGAG*YENLLH
Trigger: ATGCAGGAGGTTCTCATAGCAACCAGCACCAAATGA...GGGTAATAAATCCCCTGCCATCACATAACATAAGCTATGCCACCCATCCTGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp AAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACAAAACCGGTCTAGAGTGTGTCGTTCATaGTGGTTACAGGTCTCGGAG +
Preference number: 4 (lower is better)
Translates to: KPSQGITSCSPFSTQNRSRVCRS*WLQVSE
Trigger: CTCCGAGACCTGTAACCAGCATGAACGACACACTCT...AGACCGGTTTTGTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp TCTTACAGGATTGAACACATCTATGAGCACAGGATGGGTGGCATAGCTTATGTTTGTACTGTATCCCTCTaGCCTTCAGAAAGGCGGGAG +
Preference number: 4 (lower is better)
Translates to: SYRIEHIYEHRMGGIAYVCTVSL*PSERRE
Trigger: CTCCCGCCTTTCTGAAGGGCAGAGGGATACAGTACA...AACATAAGCTATGCCACCCATCCTGTGCTCATAGATGTGTTCAATCCTGTAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAAATACCATCACTCCACTaGAGTCAGAGATCATTGAGA +
Preference number: 4 (lower is better)
Translates to: PTRLPLTNQTYPNFHPDKIPSLH*SQRSLR
Trigger: TCTCAATGATCTCTGACTCCAGTGGAGTGATGGTAT...TTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AATCAGAGAACTGTGCAGTTGTGCGACTTTGGTGCTAGCCTGAGCTCAGGGAACACTTCCCGAAGGAATTaGTCATATCTTCCATATACC +
Preference number: 4 (lower is better)
Translates to: NQRTVQLCDFGASLSSGNTSRRN*SYLPYT
Trigger: GGTATATGGAAGATATGACCAATTCCTTCGGGAAGT...GTTCCCTGAGCTCAGGCTAGCACCAAAGTCGCACAACTGCACAGTTCTCTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CCA 90 bp CAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTCTTTTCAGGCTGGTCTaGGAACATGGGGTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: QCELSNPRLPYLQYLSTLLFRLV*EHGVQR
Trigger: CCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAG...AAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACAGTGAGCCAAGTTGAGTaGCTTTTCAGGCTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: NQCELSNPRLPYLQYLSTVSQVE*LFRLVW
Trigger: CCAGACCAGCCTGAAAAGCCACTCAACTTGGCTCAC...TGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TCTTACAGGATTGAACACATCTATGAGCACAGGATGGGTGGCATAGCTTATGTTGTGTGTCGTTCATGCTaGTTACAGGTCTCGGAGGCA +
Preference number: 4 (lower is better)
Translates to: SYRIEHIYEHRMGGIAYVVCRSC*LQVSEA
Trigger: TGCCTCCGAGACCTGTAACCAGCATGAACGACACAC...AACATAAGCTATGCCACCCATCCTGTGCTCATAGATGTGTTCAATCCTGTAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CATGGCCACTTGCAATCCACCACTGCATTTTTCTATTATATTCCTTGGTACTTTGTCGTGCGGCGTACCTaGCGATCAGCCTGTGTTCTT +
Preference number: 4 (lower is better)
Translates to: HGHLQSTTAFFYYIPWYFVVRRT*RSACVL
Trigger: AAGAACACAGGCTGATCGCCAGGTACGCCGCACGAC...AAAGTACCAAGGAATATAATAGAAAAATGCAGTGGTGGATTGCAAGTGGCCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CATTTAGAACAGGCCCCAAAAGTAAATTTGGAGAGCCAAGGAAAGAAATCCACCCACTCCTCTGCTGTGTaGGCTGTGATGAGGAGGATT +
Preference number: 4 (lower is better)
Translates to: HLEQAPKVNLESQGKKSTHSSAV*AVMRRI
Trigger: AATCCTCCTCATCACAGCCCACACAGCAGAGGAGTG...GGTGGATTTCTTTCCTTGGCTCTCCAAATTTACTTTTGGGGCCTGTTCTAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AGGGTGTTATATATCCTAGACTGGCCTCAAATTCACTATGTAGCTGAGGATGACTTCTCTGGCGTGGGCTaGGAAGCTTGCTCATGTTCT +
Preference number: 4 (lower is better)
Translates to: RVLYILDWPQIHYVAEDDFSGVG*EACSCS
Trigger: AGAACATGAGCAAGCTTCCCAGCCCACGCCAGAGAA...GTCATCCTCAGCTACATAGTGAATTTGAGGCCAGTCTAGGATATATAACACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp AAGGGCTTTGTGTATGCTAAGCAAACCCTCGGCCAATaGAATAACACCCTAGCCCTGGATAAGGCCTTTTTC +
Preference number: 4 (lower is better)
Translates to: KGFVYAKQTLGQ*NNTLALDKAFF
Trigger: GAAAAAGGCCTTATCCAGGGCTAGGGTGTTATTCAATTGGCCGAGGGTTTGCTTAGCATACACAAAGCCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp AAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTaGCTTGTGGCTCCTTGCGTGGAATTGAACCAATGT +
Preference number: 4 (lower is better)
Translates to: KMPYLLRTQWSS*LVAPCVELNQC
Trigger: ACATTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000222726.2
3UTR CAA 72 bp GAACTAACTGAATGTTCACAGTGTGGAGGTTTGCTCTaGTGGGGCTGCAGCTTGGGCAACAACATTGACATT +
Preference number: 4 (lower is better)
Translates to: ELTECSQCGGLL*WGCSLGNNIDI
Trigger: AATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAAGAGCAAACCTCCACACTGTGAACATTCAGTTAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ACCAGCTTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATGAAACAGGATCTGGCTaGCTGTTCTGTGTAACCAAA +
Preference number: 4 (lower is better)
Translates to: TSFDRRGCAIHGGIRKNHETGSG*LFCVTK
Trigger: TTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTC...ATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACATATTTGCATCGATGGTaGAGGAGATGTCAGGGGCAC +
Preference number: 4 (lower is better)
Translates to: NQCELSNPRLPYLQYLSTYLHRW*RRCQGH
Trigger: GTGCCCCTGACATCTCCTTCACCATCGATGCAAATA...TGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp TTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTTAGAACAGGCTTCATCAAGCCGGTTTaGACTCTCAAGCATACATGG +
Preference number: 4 (lower is better)
Translates to: LNRMDRRMKPAGFAFRTGFIKPV*TLKHTW
Trigger: CCATGTATGCTTGAGAGTTCAAACCGGCTTGATGAA...GCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CCTGACAAACCACAACCAGTTCCTGAATCCTATACAGTAGATTTCACCCACCTCTTGAGCCCTCATCTCTaGAAACAGCTGTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: PDKPQPVPESYTVDFTHLLSPHL*KQLSSF
Trigger: GAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAA...GAGGTGGGTGAAATCTACTGTATAGGATTCAGGAACTGGTTGTGGTTTGTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp TTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTTAGAACAGGCTTGAGCCCTCATCTCTaGAAACAGCTGTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: LNRMDRRMKPAGFAFRTGLSPHL*KQLSSF
Trigger: GAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAA...GCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp AAAGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTAAATCTCAGCTTGCATaGTGTTCTGTAGGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: KGKMPYLLRTQWSSLLVAKSQLA*CSVGGE
Trigger: CTCTCCACCTACAGAACAGCATGCAAGCTGAGATTT...AGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGAATCCTATACAGGACATTTTCTACATTTaGCAGTCGGTGCAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: LTPTSILTNHNQFLNPIQDIFYI*QSVQKR
Trigger: CCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTC...CTGTATAGGATTCAGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp AAGCCCAGTCTTGACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCGCTATGAGAACCTCCTaGATGGCCCCTCCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: KPSLDSDKNHKIYRNLWFAMRTS*MAPPEA
Trigger: TGCTTCTGGAGGGGCCATGCAGGAGGTTCTCATAGC...GAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTCAAGACTGGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp TTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCCTGTTCATTTGGTGCTGGTTaGTATGAGAACCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: FDRRGCAIHGGIRKNHPCSFGAG*YENLLH
Trigger: ATGCAGGAGGTTCTCATAGCAACCAGCACCAAATGA...ACAGGGATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGCCTTTGCTGTTTATTTaGATCGATGGTGAAGGAGAT +
Preference number: 4 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMPLLFI*IDGEGD
Trigger: ATCTCCTTCACCATCGATGCAAATAAACAGCAAAGG...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp GCACAGGATGGGTGGCATAGCTTATGTTATGTGATGGCAGGGGATTTATTACCCGCAATCAGCTGCCTTTaGTGTTTATTTGCATCGATG +
Preference number: 4 (lower is better)
Translates to: AQDGWHSLCYVMAGDLLPAISCL*CLFASM
Trigger: CATCGATGCAAATAAACAGCAAAGGCAGCTGATTGC...GGGTAATAAATCCCCTGCCATCACATAACATAAGCTATGCCACCCATCCTGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGAGCTGGTCTGGGAACATaGGGTGCAAAGGTTCACGGC +
Preference number: 4 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRAGLGT*GAKVHG
Trigger: GCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGC...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp CACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAAGTGGCTTTTCAGGCTaGTCTGGGAACATGGGGTGC +
Preference number: 4 (lower is better)
Translates to: HKIYRNLWFTGNKTRGLKSGFSG*SGNMGC
Trigger: GCACCCCATGTTCCCAGACCAGCCTGAAAAGCCACT...TTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
3UTR CAA 72 bp GCTGAGTCAGAGTATGTTGAAGGAAAACAATCCACTTaGGAAAGGAGCCCCCAAGAGCCCATTATTCCTGTT +
Preference number: 4 (lower is better)
Translates to: AESEYVEGKQST*ERSPQEPIIPV
Trigger: AACAGGAATAATGGGCTCTTGGGGGCTCCTTTCCAAAGTGGATTGTTTTCCTTCAACATACTCTGACTCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp CAATCACGTCCTTGGCTATCCTCAAGGCAAATGCTTTaGTTTAAAGAGCAGCCATGGAGATCGTTTCTGACC +
Preference number: 4 (lower is better)
Translates to: QSRPWLSSRQML*FKEQPWRSFLT
Trigger: GGTCAGAAACGATCTCCATGGCTGCTCTTTAAACAAAAGCATTTGCCTTGAGGATAGCCAAGGACGTGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp AATGGGGCTGGATTTGATGGGGTCCTGGCTTTAGTTTaGACTAAAGATCAGTATAAGCCATGGCCACTTGCA +
Preference number: 4 (lower is better)
Translates to: NGAGFDGVLALV*TKDQYKPWPLA
Trigger: TGCAAGTGGCCATGGCTTATACTGATCTTTAGTCAAAACTAAAGCCAGGACCCCATCAAATCCAGCCCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGAGTTCAGCAGGAGACTaGTGGACTGCTCCACGTGGA +
Preference number: 4 (lower is better)
Translates to: IRTTRFIEICGSQGTRQESSAGD*WTAPRG
Trigger: TCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACT...CTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGCTGTGGAGGAGGGTCTaGCATGAGCGTGTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMLWRRV*HERVQE
Trigger: TTCTTGGACACGCTCATGTCAGACCCTCCTCCACAG...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp CTCAAAGAGCATAACATGAATTTGAAACTTAACACCCTCGAGGATCTGAACAAACTGTGGAGGAGGGTCTaGCATGAGCGTGTCCAAGAA +
Preference number: 4 (lower is better)
Translates to: LKEHNMNLKLNTLEDLNKLWRRV*HERVQE
Trigger: TTCTTGGACACGCTCATGTCAGACCCTCCTCCACAG...TTTGTTCAGATCCTCGAGGGTGTTAAGTTTCAAATTCATGTTATGCTCTTTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp GAGCAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGACTTCTCAGAGGTCGGTaGTGGAGCCAGATCCTCAAA +
Preference number: 4 (lower is better)
Translates to: EQTSVLNYIATVWLMHIRLLRGR*WSQILK
Trigger: TTTGAGGATCTGGCTCCATCACCGACCTCTGAGAAG...TCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp ACCAGCTTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCACCAGGTGCAAATTaGATTTCTTCTGCACAAATC +
Preference number: 4 (lower is better)
Translates to: TSFDRRGCAIHGGIRKNHPPGAN*ISSAQI
Trigger: GATTTGTGCAGAAGAAATGCAATTTGCACCTGGTGG...ATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp AAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACAAAACCGGTCTATCGAAATCCCATCATaGTCTCACTGTGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: KPSQGITSCSPFSTQNRSIEIPS*SHCDSR
Trigger: CCTACTGTCACAGTGAGAGCATGATGGGATTTCGAT...AGACCGGTTTTGTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp AATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTATCTGGGAACATGGGGTaGAAAGGTTCACGGCTTGAA +
Preference number: 4 (lower is better)
Translates to: NVSSATQGCHIYSIYLHLSGNMG*KGSRLE
Trigger: TTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGA...TAAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp ACAACTGCATGCAGAACACCAGGTGTTCAGGTAAGGCAATCACCACTCAGAAAGCCTTTGCTGTTTATTTaGATCGATGGTGAAGGAGAT +
Preference number: 4 (lower is better)
Translates to: TTACRTPGVQVRQSPLRKPLLFI*IDGEGD
Trigger: ATCTCCTTCACCATCGATGCAAATAAACAGCAAAGG...CTTTCTGAGTGGTGATTGCCTTACCTGAACACCTGGTGTTCTGCATGCAGTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR GCA 90 bp CAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTCCTTCTCGAACTTTGTaGAAACGCCTCTTGCACATC +
Preference number: 4 (lower is better)
Translates to: QCELSNPRLPYLQYLSTLPSRTL*KRLLHI
Trigger: GATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGG...AAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTGGGAGAAACAGGATCTaGCTGACTGTTCTGTGTAAC +
Preference number: 4 (lower is better)
Translates to: LNQCELSNPRLPYLQYLSGRNRI*LTVLCN
Trigger: GTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCC...AGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp ATGAACCTTCCCTGCCTTATTATAGATCATCCGATAATCCATCTTCATAGTCTCTTCTCTGGCGTGGGCTaGGAAGCTTGCTCATGTTCT +
Preference number: 4 (lower is better)
Translates to: MNLPCLIIDHPIIHLHSLFSGVG*EACSCS
Trigger: AGAACATGAGCAAGCTTCCCAGCCCACGCCAGAGAA...GAGACTATGAAGATGGATTATCGGATGATCTATAATAAGGCAGGGAAGGTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp TTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTCTCAAGCATACATGGTaGGTTGTTCCGGAGCATGTT +
Preference number: 4 (lower is better)
Translates to: LNQCELSNPRLPYLQYLSLKHTW*VVPEHV
Trigger: AACATGCTCCGGAACAACCCACCATGTATGCTTGAG...AGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp AAGCCCAGTCTTGACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCATGCGATCCAGATCTTaGGCCCTCATCTCTGCAAAC +
Preference number: 4 (lower is better)
Translates to: KPSLDSDKNHKIYRNLWFMRSRS*ALISAN
Trigger: GTTTGCAGAGATGAGGGCTCAAGATCTGGATCGCAT...GAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTCAAGACTGGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp TTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTGAAACAGGATCTGGCTaGCTGTTCTGTGTAACCAAA +
Preference number: 4 (lower is better)
Translates to: LNQCELSNPRLPYLQYLSETGSG*LFCVTK
Trigger: TTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTC...AGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp CCTTTTTCACTCTTTGCTATACAACTCTATTCTAGAACAATGATTTCCACTTCCGAGGAGGGTCTGACATaGGCGTGTCCAAGAAGCCAT +
Preference number: 4 (lower is better)
Translates to: PFSLFAIQLYSRTMISTSEEGLT*ACPRSH
Trigger: ATGGCTTCTTGGACACGCTCATGTCAGACCCTCCTC...GGAAGTGGAAATCATTGTTCTAGAATAGAGTTGTATAGCAAAGAGTGAAAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGCGATGTGAGCCAAGTTaGGTGGCTTTTCAGGCTGGT +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMRCEPS*VAFQAG
Trigger: ACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCG...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp AAAGGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTTCTACCCGAAGTCTCTaGATCTCTTGTAAGATTTCT +
Preference number: 4 (lower is better)
Translates to: KGKMPYLLRTQWSSLLVASTRSL*ISCKIS
Trigger: AGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGA...AGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp AAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGAATCCTATAAAATCTCAGCTTGCATaGTGTTCTGTAGGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: KLTPTSILTNHNQFLNPIKSQLA*CSVGGE
Trigger: CTCTCCACCTACAGAACAGCATGCAAGCTGAGATTT...TATAGGATTCAGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCAAATCTCAGCTTGCATaGTGTTCTGTAGGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSKSQLA*CSVGGE
Trigger: CTCTCCACCTACAGAACAGCATGCAAGCTGAGATTT...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp GGATCTGAACAAAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACCCACCAGGTGCAAATTaGATTTCTTCTGCACAAATC +
Preference number: 4 (lower is better)
Translates to: GSEQNLPKESQVVLPSQHPPGAN*ISSAQI
Trigger: GATTTGTGCAGAAGAAATGCAATTTGCACCTGGTGG...GTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTTTGTTCAGATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp AACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACACAGCTCAGGGACTTaGTTAATGCATTCGTTAGCT +
Preference number: 4 (lower is better)
Translates to: NQCELSNPRLPYLQYLSTHSSGT*LMHSLA
Trigger: AGCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTG...TGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp AAGCCCAGTCTTGACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCAGAGTGTGTCGTTCATaGTGGTTACAGGTCTCGGAG +
Preference number: 4 (lower is better)
Translates to: KPSLDSDKNHKIYRNLWFRVCRS*WLQVSE
Trigger: CTCCGAGACCTGTAACCAGCATGAACGACACACTCT...GAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTCAAGACTGGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp ACCAGCTTCGATAGACGTGGGTGTGCAATTCATGGTGGGATAAGAAAGAACCATCCTTTGCTGTTTATTTaGATCGATGGTGAAGGAGAT +
Preference number: 4 (lower is better)
Translates to: TSFDRRGCAIHGGIRKNHPLLFI*IDGEGD
Trigger: ATCTCCTTCACCATCGATGCAAATAAACAGCAAAGG...ATGGTTCTTTCTTATCCCACCATGAATTGCACACCCACGTCTATCGAAGCTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp TATCTATCTACACTTAACAGCCAAGAACTAATAACAGTGGACGAAGATGGTCAAATTGGTGATGGAGTCTaGAGCCACCAGCAGGTCACT +
Preference number: 4 (lower is better)
Translates to: YLSTLNSQELITVDEDGQIGDGV*SHQQVT
Trigger: AGTGACCTGCTGGTGGCTGCAGACTCCATCACCAAT...TTGACCATCTTCGTCCACTGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AAGCCCAGTCTTGACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCATGCTGTTCTGTAGGTaGAGAGTCGGATGCGATCCA +
Preference number: 4 (lower is better)
Translates to: KPSLDSDKNHKIYRNLWFMLFCR*RVGCDP
Trigger: TGGATCGCATCCGACTCTCCACCTACAGAACAGCAT...GAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTCAAGACTGGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp CATGGCCACTTGCAATCCACCACTGCATTTTTCTATTATATTCCTTGGTACTTTATGCTGTTCTGTAGGTaGAGAGTCGGATGCGATCCA +
Preference number: 4 (lower is better)
Translates to: HGHLQSTTAFFYYIPWYFMLFCR*RVGCDP
Trigger: TGGATCGCATCCGACTCTCCACCTACAGAACAGCAT...AAAGTACCAAGGAATATAATAGAAAAATGCAGTGGTGGATTGCAAGTGGCCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp AACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGGATTTGGTGAGTGGTTaGCATCCTCTTGTTGAGCTG +
Preference number: 4 (lower is better)
Translates to: NHKIYRNLWFTGNKTRGLDLVSG*HPLVEL
Trigger: CAGCTCAACAAGAGGATGCCAACCACTCACCAAATC...CAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGCTTTTCAGGCTGGTCTaGGAACATGGGGTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMLFRLV*EHGVQR
Trigger: CCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAG...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp CTCAAAGAGCATAACATGAATTTGAAACTTAACACCCTCGAGGATCTGAACAAACTTTTCAGGCTGGTCTaGGAACATGGGGTGCAAAGG +
Preference number: 4 (lower is better)
Translates to: LKEHNMNLKLNTLEDLNKLFRLV*EHGVQR
Trigger: CCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAG...TTTGTTCAGATCCTCGAGGGTGTTAAGTTTCAAATTCATGTTATGCTCTTTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp CAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGAAAAAGTGGCTTTTCAGGCTaGTCTGGGAACATGGGGTGC +
Preference number: 4 (lower is better)
Translates to: QTSVLNYIATVWLMHIRKSGFSG*SGNMGC
Trigger: GCACCCCATGTTCCCAGACCAGCCTGAAAAGCCACT...TTTTCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGGTGAGCCAAGTTGAGTaGCTTTTCAGGCTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMVSQVE*LFRLVW
Trigger: CCAGACCAGCCTGAAAAGCCACTCAACTTGGCTCAC...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp TATCTATCTACACTTAACAGCCAAGAACTAATAACAGTGGACGAAGATGGTCAAGTGAGCCAAGTTGAGTaGCTTTTCAGGCTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: YLSTLNSQELITVDEDGQVSQVE*LFRLVW
Trigger: CCAGACCAGCCTGAAAAGCCACTCAACTTGGCTCAC...TTGACCATCTTCGTCCACTGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGGTGTGTCGTTCATGCTaGTTACAGGTCTCGGAGGCA +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMVCRSC*LQVSEA
Trigger: TGCCTCCGAGACCTGTAACCAGCATGAACGACACAC...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
3UTR CAA 72 bp TTGTCTTTGACAGTTCTTTTACACACCAGCTTCCAGTaGAGTGTGACATCCCAATACCACACTGAAGAGCTT +
Preference number: 4 (lower is better)
Translates to: LSLTVLLHTSFQ*SVTSQYHTEEL
Trigger: AAGCTCTTCAGTGTGGTATTGGGATGTCACACTCAACTGGAAGCTGGTGTGTAAAAGAACTGTCAAAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp GTTCTCCCTTCTCAACACAAAACCGGTCTTCATTTGTaGCCGTCAGTAGTAGTGACAGTTGTAACAGAATGT +
Preference number: 4 (lower is better)
Translates to: VLPSQHKTGLHL*PSVVVTVVTEC
Trigger: ACATTCTGTTACAACTGTCACTACTACTGACGGCAACAAATGAAGACCGGTTTTGTGTTGAGAAGGGAGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
3UTR CAA 72 bp GTTGTTCTCCCTTCTCAACACAAAACCGGTCTTCATTaGTTGCCGTCAGTAGTAGTGACAGTTGTAACAGAA +
Preference number: 4 (lower is better)
Translates to: VVLPSQHKTGLH*LPSVVVTVVTE
Trigger: TTCTGTTACAACTGTCACTACTACTGACGGCAACAAATGAAGACCGGTTTTGTGTTGAGAAGGGAGAACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGCGCGCAATGCTTCAATaGCGTTCCAAATGTCCACCA +
Preference number: 4 (lower is better)
Translates to: IRTTRFIEICGSQGTRQERAMLQ*RSKCPP
Trigger: TGGTGGACATTTGGAACGTCATTGAAGCATTGCGCG...CTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACGAAACAGGATCTGGCTaGCTGTTCTGTGTAACCAAA +
Preference number: 4 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDETGSG*LFCVTK
Trigger: TTTGGTTACACAGAACAGTCAGCCAGATCCTGTTTC...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp GATCTTGTTAACCAACAGCTTTGGAGGGAACTAAAGAGGTGTGAAGTGGACAGTTCTACCCGAAGTCTCTaGATCTCTTGTAAGATTTCT +
Preference number: 4 (lower is better)
Translates to: DLVNQQLWRELKRCEVDSSTRSL*ISCKIS
Trigger: AGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGA...ACTGTCCACTTCACACCTCTTTAGTTCCCTCCAAAGCTGTTGGTTAACAAGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp AGGCTGCCATATTTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAACAGCCAGATCCTCAAACTaGGGTCTCGAGAACTCGGAA +
Preference number: 4 (lower is better)
Translates to: RLPYLQYLSTLNSQELITARSSN*GLENSE
Trigger: TTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGC...TGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAAATATGGCAGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTTGAGCCCTCATCTCTaGAAACAGCTGTCTTCTTTC +
Preference number: 4 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDLSPHL*KQLSSF
Trigger: GAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCAA...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp ATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGTCTGGGAACATGGGGTaGAAAGGTTCACGGCTTGAA +
Preference number: 4 (lower is better)
Translates to: IRTTRFIEICGSQGTRQESGNMG*KGSRLE
Trigger: TTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGA...CTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp CAACAAAATCCACCTGTGCAAAGAAATCAGAGAACTGTGCAGTTGTGCGACTTTGCAATCAGCTGCCTTTaGTGTTTATTTGCATCGATG +
Preference number: 4 (lower is better)
Translates to: QQNPPVQRNQRTVQLCDFAISCL*CLFASM
Trigger: CATCGATGCAAATAAACAGCAAAGGCAGCTGATTGC...AAAGTCGCACAACTGCACAGTTCTCTGATTTCTTTGCACAGGTGGATTTTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR GCA 90 bp TTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAACAGTGGACGAAGATAGCTCATTCTCCAGCTaGCGCACAGACTCGTTCTCA +
Preference number: 4 (lower is better)
Translates to: LQYLSTLNSQELITVDEDSSFSS*RTDSFS
Trigger: TGAGAACGAGTCTGTGCGGCAGCTGGAGAATGAGCT...ATCTTCGTCCACTGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACAAAACCGGTCTACTTCCCGAAGGAATTaGTCATATCTTCCATATACC +
Preference number: 4 (lower is better)
Translates to: KPSQGITSCSPFSTQNRSTSRRN*SYLPYT
Trigger: GGTATATGGAAGATATGACCAATTCCTTCGGGAAGT...AGACCGGTTTTGTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CCA 90 bp AAGCCCAGTCTTGACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCGGGAGAAACAGGATCTaGCTGACTGTTCTGTGTAAC +
Preference number: 4 (lower is better)
Translates to: KPSLDSDKNHKIYRNLWFGRNRI*LTVLCN
Trigger: GTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCC...GAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTCAAGACTGGGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp TTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAACAGTGGACGAAGATTCTCTCCGGCTCTCCTaGAGAGCAGACATTCTCTGT +
Preference number: 4 (lower is better)
Translates to: LQYLSTLNSQELITVDEDSLRLS*RADILC
Trigger: ACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGA...ATCTTCGTCCACTGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGAAAAATGAGACCTTCCAACTaGACCATCAGCTCTCTCCGG +
Preference number: 4 (lower is better)
Translates to: QTSVLNYIATVWLMHIRKMRPSN*TISSLR
Trigger: CCGGAGAGAGCTGATGGTCCAGTTGGAAGGTCTCAT...TTTTCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
3UTR CAA 72 bp GCTAAGAAAAAGAAAAGGTGGCTGGTTAGTGAGAAATaGCTCACTGGTAGTGGTTTCCAGAGAGTTCTTGTA +
Preference number: 4 (lower is better)
Translates to: AKKKKRWLVSEK*LTGSGFQRVLV
Trigger: TACAAGAACTCTCTGGAAACCACTACCAGTGAGCAATTTCTCACTAACCAGCCACCTTTTCTTTTTCTTAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
3UTR CAA 72 bp GGTCCCGACAATAACCTCAAAGAGCATAACATGAATTaGAAACTTAACACCCTCGAGGATCTGAACAAAACC +
Preference number: 4 (lower is better)
Translates to: GPDNNLKEHNMN*KLNTLEDLNKT
Trigger: GGTTTTGTTCAGATCCTCGAGGGTGTTAAGTTTCAAATTCATGTTATGCTCTTTGAGGTTATTGTCGGGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACTGCTGTGGGTAGTTTaGGAACTTCCCGAAGGAATT +
Preference number: 4 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRLLWVV*ELPEGI
Trigger: AATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAG...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp CACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAGACATTTTCTACATTTaGCAGTCGGTGCAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: HKIYRNLWFTGNKTRGLKDIFYI*QSVQKR
Trigger: CCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTC...TTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp TTACCCGATCTTTATGAGAAGAGTTTCTATGCCTTTTCAGAGAAATGGAAGCTGGACATTTTCTACATTTaGCAGTCGGTGCAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: LPDLYEKSFYAFSEKWKLDIFYI*QSVQKR
Trigger: CCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTC...CAGCTTCCATTTCTCTGAAAAGGCATAGAAACTCTTCTCATAAAGATCGGGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR GCA 90 bp GAGCAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGACACAGCTCAGGGACTTaGTTAATGCATTCGTTAGCT +
Preference number: 4 (lower is better)
Translates to: EQTSVLNYIATVWLMHIRHSSGT*LMHSLA
Trigger: AGCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTG...TCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTGCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR GCA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGAAAATCTCAGCTTGCATaGTGTTCTGTAGGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRKSQLA*CSVGGE
Trigger: CTCTCCACCTACAGAACAGCATGCAAGCTGAGATTT...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp AAGCCCAGTCTTGACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCCCACCAGGTGCAAATTaGATTTCTTCTGCACAAATC +
Preference number: 4 (lower is better)
Translates to: KPSLDSDKNHKIYRNLWFPPGAN*ISSAQI
Trigger: GATTTGTGCAGAAGAAATGCAATTTGCACCTGGTGG...GAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTCAAGACTGGGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGATCGAAATCCCATCATaGTCTCACTGTGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMIEIPS*SHCDSR
Trigger: CCTACTGTCACAGTGAGAGCATGATGGGATTTCGAT...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp ATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGTCATTTGGTGCTGGTTaGTATGAGAACCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: IRTTRFIEICGSQGTRQESFGAG*YENLLH
Trigger: ATGCAGGAGGTTCTCATAGCAACCAGCACCAAATGA...CTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR GCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGCACAGCTCAGGGACTTaGTTAATGCATTCGTTAGCT +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMHSSGT*LMHSLA
Trigger: AGCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTG...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp AAGCCCAGTCTTGACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCATACCATCACTCCACTaGAGTCAGAGATCATTGAGA +
Preference number: 4 (lower is better)
Translates to: KPSLDSDKNHKIYRNLWFIPSLH*SQRSLR
Trigger: TCTCAATGATCTCTGACTCCAGTGGAGTGATGGTAT...GAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGTCAAGACTGGGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR TCA 90 bp CATGGCCACTTGCAATCCACCACTGCATTTTTCTATTATATTCCTTGGTACTTTATCTTAACTTGTCCATaGTCTTTCCTCCACACAATG +
Preference number: 4 (lower is better)
Translates to: HGHLQSTTAFFYYIPWYFILTCP*SFLHTM
Trigger: CATTGTGTGGAGGAAAGATCATGGACAAGTTAAGAT...AAAGTACCAAGGAATATAATAGAAAAATGCAGTGGTGGATTGCAAGTGGCCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp AGGCTGCCATATTTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAACATTCATCAAGCCGGTTTaGACTCTCAAGCATACTCCT +
Preference number: 4 (lower is better)
Translates to: RLPYLQYLSTLNSQELITFIKPV*TLKHTP
Trigger: AGGAGTATGCTTGAGAGTTCAAACCGGCTTGATGAA...TGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAAATATGGCAGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR TCA 90 bp GAGCAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGATCTACCCGAAGTCTCTaGATCTCTTGTAAGATTTCT +
Preference number: 4 (lower is better)
Translates to: EQTSVLNYIATVWLMHIRSTRSL*ISCKIS
Trigger: AGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGA...TCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp CTCAAAGAGCATAACATGAATTTGAAACTTAACACCCTCGAGGATCTGAACAAAATACCATCACTCCACTaGAGTCAGAGATCATTGAGA +
Preference number: 4 (lower is better)
Translates to: LKEHNMNLKLNTLEDLNKIPSLH*SQRSLR
Trigger: TCTCAATGATCTCTGACTCCAGTGGAGTGATGGTAT...TTTGTTCAGATCCTCGAGGGTGTTAAGTTTCAAATTCATGTTATGCTCTTTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR TCA 90 bp ATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGATCTTAACTTGTCCATaGTCTTTCCTCCACACAATG +
Preference number: 4 (lower is better)
Translates to: IRTTRFIEICGSQGTRQEILTCP*SFLHTM
Trigger: CATTGTGTGGAGGAAAGATCATGGACAAGTTAAGAT...CTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp AGGCTGCCATATTTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAACAATACCATCACTCCACTaGAGTCAGAGATCATTGAGA +
Preference number: 4 (lower is better)
Translates to: RLPYLQYLSTLNSQELITIPSLH*SQRSLR
Trigger: TCTCAATGATCTCTGACTCCAGTGGAGTGATGGTAT...TGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAAATATGGCAGCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CCA 90 bp AAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAATGACTTCCCGAAGGAATTaGTCATATCTTCCATATACC +
Preference number: 4 (lower is better)
Translates to: KIYRNLWFTGNKTRGLKMTSRRN*SYLPYT
Trigger: GGTATATGGAAGATATGACCAATTCCTTCGGGAAGT...CATTTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CCA 90 bp GCAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGAAAACTTCCCGAAGGAATTaGTCATATCTTCCATATACC +
Preference number: 4 (lower is better)
Translates to: ADISAKLYRNSLAHAYKKTSRRN*SYLPYT
Trigger: GGTATATGGAAGATATGACCAATTCCTTCGGGAAGT...TTTCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR TCA 90 bp CAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGAAAAATCTTAACTTGTCCATaGTCTTTCCTCCACACAATG +
Preference number: 4 (lower is better)
Translates to: QTSVLNYIATVWLMHIRKILTCP*SFLHTM
Trigger: CATTGTGTGGAGGAAAGATCATGGACAAGTTAAGAT...TTTTCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
3UTR CAA 72 bp CTTGCAATCCACCACTGCATTTTTCTATTATATTCCTaGGTACTTTTCTATAACGATCTGAATGAAGGCTTG +
Preference number: 4 (lower is better)
Translates to: LAIHHCIFLLYS*VLFYNDLNEGL
Trigger: CAAGCCTTCATTCAGATCGTTATAGAAAAGTACCAAGGAATATAATAGAAAAATGCAGTGGTGGATTGCAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS TCA 90 bp GAGGGAGTCCTGCGGGGTGTGCGTTGGTGTGGGACAGGCAGATGCTaGACGGATGGGCATGGGGATCGGCCTGCTGATGGTGTGGCTGGG +
Preference number: 5 (lower is better)
Translates to: EGVLRGVRWCGTGRC*TDGHGDRPADGVAG
Trigger: CCCAGCCACACCATCAGCAGGCCGATCCCCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 90 bp GCAAACGCCTCTTGCACATCTCCGCCTACCCCAGTGAGGGAGTCCTaGGGGGTGTGCGTTGGTGTGGGACAGGCAGATGCTGAACGGATG +
Preference number: 5 (lower is better)
Translates to: ANASCTSPPTPVRES*GVCVGVGQADAERM
Trigger: CATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTCACTGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS TCA 90 bp GGCCTTCCGGGTCAAAGGCTGCGAGCAGGAAGTTCAGCAGGAGACTaGTGGACTGCTCCACGTGGATTTGGTGAGTGGTTGGCATCCTCT +
Preference number: 5 (lower is better)
Translates to: GLPGQRLRAGSSAGD*WTAPRGFGEWLASS
Trigger: AGAGGATGCCAACCACTCACCAAATCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACTTCCTGCTCGCAGCCTTTGACCCGGAAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CCA 90 bp GTTGCGTGTAAGGATCCCCATCTTCCGGGACCATGTCACCATGCGTaGTACTTGCAGCTCCACCGTGAATGTACCCAGGTTTCCGGGAGT +
Preference number: 5 (lower is better)
Translates to: VACKDPHLPGPCHHA*YLQLHRECTQVSGS
Trigger: ACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGTCCCGGAAGATGGGGATCCTTACACGCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS TCA 90 bp TCTTCCGGGACCATGTCACCATGCGTGGTACTTGCAGCTCCACCGTaGATGTACCCAGGTTTCCGGGAGTGGATTTGGGCTAGAAAAGCC +
Preference number: 5 (lower is better)
Translates to: SSGTMSPCVVLAAPP*MYPGFREWIWARKA
Trigger: GGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGTCCCGGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 90 bp GTAAGGATCCCCATCTTCCGGGACCATGTCACCATGCGTGGTACTTaGAGCTCCACCGTGAATGTACCCAGGTTTCCGGGAGTGGATTTG +
Preference number: 5 (lower is better)
Translates to: VRIPIFRDHVTMRGT*SSTVNVPRFPGVDL
Trigger: CAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGTCCCGGAAGATGGGGATCCTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS CCA 90 bp CATGCTGGTTACAGGTCTCGGAGGCACGATGTGAGCCAAGTTGAGTaGCTTTTCAGGCTGGTCTGGGAACATGGGGTGCAAAGGTTCACG +
Preference number: 5 (lower is better)
Translates to: HAGYRSRRHDVSQVE*LFRLVWEHGVQRFT
Trigger: CGTGAACCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAGACCTGTAACCAGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CCA 90 bp TGGGCTGTGATGAGGAGGATTCTGCTGCCAGTCGTGCGGCGTACCTaGCGATCAGCCTGTGTTCTTCATCAAGCCGGTTTGAACTCTCAA +
Preference number: 5 (lower is better)
Translates to: WAVMRRILLPVVRRT*RSACVLHQAGLNSQ
Trigger: TTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAATCCTCCTCATCACAGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp ACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCAAAGAGCGTGGGGAGCTaGCCCCCTGGGTCTTCAGGA +
Preference number: 5 (lower is better)
Translates to: TRLPLTNQTYPNFHPDKPKSVGS*PPGSSG
Trigger: TCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCTT...TGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CAA 90 bp GGTAGGTTTAATCATTTCTCAGAGGGACTTGGGGACATGGGTAGGCCAAGGACCTCCAGGCGGGCCACGTaGAGTTCTATGTTTGGGTCC +
Preference number: 5 (lower is better)
Translates to: GRFNHFSEGLGDMGRPRTSRRAT*SSMFGS
Trigger: GGACCCAAACATAGAACTCAACGTGGCCCGCCTGGA...GGTCCTTGGCCTACCCATGTCCCCAAGTCCCTCTGAGAAATGATTAAACCTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CAA 90 bp CTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTCTGCTCCACGTGGATTaGGTGAGTGGTTGGCATCCT +
Preference number: 5 (lower is better)
Translates to: LWGGLAVLDQCSFIGHQLLLHVD*VSGWHP
Trigger: AGGATGCCAACCACTCACCAAATCCACGTGGAGCAG...AAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp AGTTCAGTCCAGCCAGCGACTGAGGGCCACCAGCAGGGTCTGAGGTCTAATGTAGCACAGCTCAGGGACTaGCTTAATGCATTCGTTAGC +
Preference number: 5 (lower is better)
Translates to: SSVQPATEGHQQGLRSNVAQLRD*LNAFVS
Trigger: GCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTGC...TACATTAGACCTCAGACCCTGCTGGTGGCCCTCAGTCGCTGGCTGGACTGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS CCA 90 bp AGTGGAGAGCACCGCCTCCAGGCGGGCCACGTTGAGTTCTATGTTTaGGTCCAGGTTATTCAAAGCGTTTTCGCGCAATGCTTCAATGAC +
Preference number: 5 (lower is better)
Translates to: SGEHRLQAGHVEFYV*VQVIQSVFAQCFND
Trigger: GTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTGGACCCAAACATAGAACTCAACGTGGCCCGCCTGGAGGCGGTGCTCTCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp TCTCCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACGCAAAGGTTCACGGCTaGAAGCACAGCTCAGGGACT +
Preference number: 5 (lower is better)
Translates to: SPTRLPLTNQTYPNFHPDAKVHG*KHSSGT
Trigger: AGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGC...GTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS TCA 90 bp CTAGCTCTGCAATCAGCTGCCTTTGCTGTTTATTTGCATCGATGGTaGAGGAGATGTCAGGGGCACTCCTCTGCTGTGTGGGCTGTGATG +
Preference number: 5 (lower is better)
Translates to: LALQSAAFAVYLHRW*RRCQGHSSAVWAVM
Trigger: CATCACAGCCCACACAGCAGAGGAGTGCCCCTGACATCTCCTTCACCATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCAGAGCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS GCA 90 bp GAACACTCAACTGGATGGAAGACATTTTCTACATTTGCCAGTCGGTaGAGAAGAGGCAGCCATACCAGGCACTGTGGAGGAGGGTCTGAC +
Preference number: 5 (lower is better)
Translates to: EHSTGWKTFSTFASR*RRGSHTRHCGGGSD
Trigger: GTCAGACCCTCCTCCACAGTGCCTGGTATGGCTGCCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTCTTCCATCCAGTTGAGTGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCACTGCTCCACGTGGATTaGGTGAGTGGTTGGCATCCT +
Preference number: 5 (lower is better)
Translates to: LPLTNQTYPNFHPDKPQPLLHVD*VSGWHP
Trigger: AGGATGCCAACCACTCACCAAATCCACGTGGAGCAG...TGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAAGCACAGCTCAGGGACTaGCTTAATGCATTCGTTAGC +
Preference number: 5 (lower is better)
Translates to: LRTQWSSLLVAPCVELNQAQLRD*LNAFVS
Trigger: GCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTGC...TTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp GTTTGCTCTTGTGGGGCTGCAGCTTGGGCAACAACATTGACATTTGAGGAGCTCGCCCTAGCCAGCATTTaGTTCTGTTCTACTTCACTG +
Preference number: 5 (lower is better)
Translates to: VCSCGAAAWATTLTFEELALASI*FCSTSL
Trigger: CAGTGAAGTAGAACAGAACAAAATGCTGGCTAGGGC...GAGCTCCTCAAATGTCAATGTTGTTGCCCAAGCTGCAGCCCCACAAGAGCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS TCA 90 bp AGAAAAGCCTTCTCAGAGGTCGGTGATGGAGCCAGATCCTCAAACTaGGGTCTCGAGAACTCGGAATCCACAGTACTTTCTGTTTCACTC +
Preference number: 5 (lower is better)
Translates to: RKAFSEVGDGARSSN*GLENSESTVLSVSL
Trigger: GAGTGAAACAGAAAGTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGAGAAGGCTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 90 bp CACCAGGTGCAAATTGCATTTCTTCTGCACAAATCTCAGCTTGCATaGTGTTCTGTAGGTGGAGAGTCGGATGCGATCCAGATCTTGAGC +
Preference number: 5 (lower is better)
Translates to: HQVQIAFLLHKSQLA*CSVGGESDAIQILS
Trigger: GCTCAAGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTGAGATTTGTGCAGAAGAAATGCAATTTGCACCTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTCCAGGCGGGCCACGTaGAGTTCTATGTTTGGGTCC +
Preference number: 5 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSSRRAT*SSMFGS
Trigger: GGACCCAAACATAGAACTCAACGTGGCCCGCCTGGA...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp AAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACAAAACCGGTCTCTGCTCCACGTGGATTaGGTGAGTGGTTGGCATCCT +
Preference number: 5 (lower is better)
Translates to: KPSQGITSCSPFSTQNRSLLHVD*VSGWHP
Trigger: AGGATGCCAACCACTCACCAAATCCACGTGGAGCAG...AGACCGGTTTTGTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp GGAAAAATGCCCTACCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTACTGCTGTGGGTAGTTaGAGAACTTCCCGAAGGAAT +
Preference number: 5 (lower is better)
Translates to: GKMPYLLRTQWSSLLVAPTAVGS*RTSRRN
Trigger: ATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGT...AGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGGTAGGGCATTTTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp CTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGGTGACCTTTTTCTGTaGGGAGAAACAGGATCTGGC +
Preference number: 5 (lower is better)
Translates to: LTNQTYPNFHPDKPQPVPGDLFL*GETGSG
Trigger: GCCAGATCCTGTTTCTCCCAACAGAAAAAGGTCACC...AGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp CTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAACCAACTTCATCAAGCCGGTTaGAACTCTCAAGCATACTCC +
Preference number: 5 (lower is better)
Translates to: LRTQWSSLLVAPCVELNQLHQAG*NSQAYS
Trigger: GGAGTATGCTTGAGAGTTCAAACCGGCTTGATGAAG...TTGGTTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CAA 90 bp CTGTGGGGAGGCTTGGCTGTGCTAGATCAATGCTCATTCATAGGCCACCAGCTTTGCAATCAGCTGCCTTaGCTGTTTATTTGCATCGAT +
Preference number: 5 (lower is better)
Translates to: LWGGLAVLDQCSFIGHQLCNQLP*LFICID
Trigger: ATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCA...AAGCTGGTGGCCTATGAATGAGCATTGATCTAGCACAGCCAAGCCTCCCCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS TCA 90 bp CTTTCCTCCACACAATGTAGCCAAAGCCATTTTGACAGCAAATACTaGGATTTTTCCATGGCCTTCCGGGTCAAAGGCTGCGAGCAGGAA +
Preference number: 5 (lower is better)
Translates to: LSSTQCSQSHFDSKY*DFSMAFRVKGCEQE
Trigger: TTCCTGCTCGCAGCCTTTGACCCGGAAGGCCATGGAAAAATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTACATTGTGTGGAGGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp TGTGAGATACAGTTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCAGATGCGATCCAGATCTaGAGCCCTCATCTCTGCAAA +
Preference number: 5 (lower is better)
Translates to: CEIQLNRMDRRMKPAGFADAIQI*SPHLCK
Trigger: TTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATC...TGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAACTGTATCTCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp CCTTCTGAGGACACAGTGGAGTTCTTTGCTTGTGGCTCCTTGCGTGGAATTGAAGTAGTTGTGACACTGTaGACATCGGTATCGAAATCC +
Preference number: 5 (lower is better)
Translates to: PSEDTVEFFACGSLRGIEVVVTL*TSVSKS
Trigger: GGATTTCGATACCGATGTCAACAGTGTCACAACTAC...TTCAATTCCACGCAAGGAGCCACAAGCAAAGAACTCCACTGTGTCCTCAGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp AGGGTGTTATATATCCTAGACTGGCCTCAAATTCACTATGTAGCTGAGGATGACGCAAAGGTTCACGGCTaGAAGCACAGCTCAGGGACT +
Preference number: 5 (lower is better)
Translates to: RVLYILDWPQIHYVAEDDAKVHG*KHSSGT
Trigger: AGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGC...GTCATCCTCAGCTACATAGTGAATTTGAGGCCAGTCTAGGATATATAACACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS-3UTR CAA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGTTGTTCCGGAGCATGTaGACATACAACCCAATGAGA +
Preference number: 5 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMLFRSM*TYNPMR
Trigger: TCTCATTGGGTTGTATGTCAACATGCTCCGGAACAA...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAACCACAACTTCATCAAGCCGGTTaGAACTCTCAAGCATACATG +
Preference number: 5 (lower is better)
Translates to: RLPLTNQTYPNFHPDKPQLHQAG*NSQAYM
Trigger: CATGTATGCTTGAGAGTTCAAACCGGCTTGATGAAG...TTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp GCGGGGCAAAGTCTGTTTGCAAAGAGTTATCAAGGGATACACCCTGCCATGATCCTTCATCAAGCCGGTTaGAACTCTCAAGCATACATG +
Preference number: 5 (lower is better)
Translates to: AGQSLFAKSYQGIHPAMILHQAG*NSQAYM
Trigger: CATGTATGCTTGAGAGTTCAAACCGGCTTGATGAAG...GATCATGGCAGGGTGTATCCCTTGATAACTCTTTGCAAACAGACTTTGCCCCGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp ACTTACCCCAACTTCCATCCTGACAAACCACAACCAGTTCCTGAATCCTATACAACAACACACGCCATTTaGTCTCGGCTACAGGACAGG +
Preference number: 5 (lower is better)
Translates to: TYPNFHPDKPQPVPESYTTTHAI*SRLQDR
Trigger: CCTGTCCTGTAGCCGAGACAAAATGGCGTGTGTTGT...TGTATAGGATTCAGGAACTGGTTGTGGTTTGTCAGGATGGAAGTTGGGGTAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222726.2
CDS-3UTR CAA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACCTGCTCCACGTGGATTaGGTGAGTGGTTGGCATCCT +
Preference number: 5 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDLLHVD*VSGWHP
Trigger: AGGATGCCAACCACTCACCAAATCCACGTGGAGCAG...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp GGATCTGAACAAAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACGGTGACCTTTTTCTGTaGGGAGAAACAGGATCTGGC +
Preference number: 5 (lower is better)
Translates to: GSEQNLPKESQVVLPSQHGDLFL*GETGSG
Trigger: GCCAGATCCTGTTTCTCCCAACAGAAAAAGGTCACC...GTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTTTGTTCAGATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CCTGCTGGGTTTGCATTTAGAACAGGCCCCAAAAGTAAATTTGGAGAGCCAAGGGTAGTTGTGACACTGTaGACATCGGTATCGAAATCC +
Preference number: 5 (lower is better)
Translates to: PAGFAFRTGPKSKFGEPRVVVTL*TSVSKS
Trigger: GGATTTCGATACCGATGTCAACAGTGTCACAACTAC...CCTTGGCTCTCCAAATTTACTTTTGGGGCCTGTTCTAAATGCAAACCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCGATGCGATCCAGATCTaGAGCCCTCATCTCTGCAAA +
Preference number: 5 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSDAIQI*SPHLCK
Trigger: TTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATC...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGATCCAGGCGGGCCACGTaGAGTTCTATGTTTGGGTCC +
Preference number: 5 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRSRRAT*SSMFGS
Trigger: GGACCCAAACATAGAACTCAACGTGGCCCGCCTGGA...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp TATCTATCTACACTTAACAGCCAAGAACTAATAACAGTGGACGAAGATGGTCAATCCAGGCGGGCCACGTaGAGTTCTATGTTTGGGTCC +
Preference number: 5 (lower is better)
Translates to: YLSTLNSQELITVDEDGQSRRAT*SSMFGS
Trigger: GGACCCAAACATAGAACTCAACGTGGCCCGCCTGGA...TTGACCATCTTCGTCCACTGTTATTAGTTCTTGGCTGTTAAGTGTAGATAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp CTGCCCAGAGGGAGGAGGGAGCTTAGATTAGAGCAGCTTTTCTGTTTCTACATGGTAGCCAAAGCCATTTaGACAGCAAATACTGAGATT +
Preference number: 5 (lower is better)
Translates to: LPRGRRELRLEQLFCFYMVAKAI*TANTEI
Trigger: AATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTAC...CATGTAGAAACAGAAAAGCTGCTCTAATCTAAGCTCCCTCCTCCCTCTGGGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CCAACACGTCTCCCTCTGACCAACCAAACTTACCCCAACTTCCATCCTGACAAAAACTTCCCGAAGGAATaGGTCATATCTTCCATATAC +
Preference number: 5 (lower is better)
Translates to: PTRLPLTNQTYPNFHPDKNFPKE*VISSIY
Trigger: GTATATGGAAGATATGACCAATTCCTTCGGGAAGTT...TTTGTCAGGATGGAAGTTGGGGTAAGTTTGGTTGGTCAGAGGGAGACGTGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp TTGAACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTGGTGACCTTTTTCTGTaGGGAGAAACAGGATCTGGC +
Preference number: 5 (lower is better)
Translates to: LNQCELSNPRLPYLQYLSGDLFL*GETGSG
Trigger: GCCAGATCCTGTTTCTCCCAACAGAAAAAGGTCACC...AGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp TTACCCGATCTTTATGAGAAGAGTTTCTATGCCTTTTCAGAGAAATGGAAGCTGGCAAAGGTTCACGGCTaGAAGCACAGCTCAGGGACT +
Preference number: 5 (lower is better)
Translates to: LPDLYEKSFYAFSEKWKLAKVHG*KHSSGT
Trigger: AGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGC...CAGCTTCCATTTCTCTGAAAAGGCATAGAAACTCTTCTCATAAAGATCGGGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CCTGACAAACCACAACCAGTTCCTGAATCCTATACAGTAGATTTCACCCACCTCTTGTTCCGGAGCATGTaGACATACAACCCAATGAGA +
Preference number: 5 (lower is better)
Translates to: PDKPQPVPESYTVDFTHLLFRSM*TYNPMR
Trigger: TCTCATTGGGTTGTATGTCAACATGCTCCGGAACAA...GAGGTGGGTGAAATCTACTGTATAGGATTCAGGAACTGGTTGTGGTTTGTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp TCTTACAGGATTGAACACATCTATGAGCACAGGATGGGTGGCATAGCTTATGTTAGCATACATGGTGGGTaGTTCCGGAGCATGTTGACA +
Preference number: 5 (lower is better)
Translates to: SYRIEHIYEHRMGGIAYVSIHGG*FRSMLT
Trigger: TGTCAACATGCTCCGGAACAACCCACCATGTATGCT...AACATAAGCTATGCCACCCATCCTGTGCTCATAGATGTGTTCAATCCTGTAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS TCA 90 bp TGTTTGGGTCCAGGTTATTCAAAGCGTTTTCGCGCAATGCTTCAATaGCGTTCCAAATGTCCACCAGGTGCAAATTGCATTTCTTCTGCA +
Preference number: 5 (lower is better)
Translates to: CLGPGYSKRFRAMLQ*RSKCPPGANCISSA
Trigger: TGCAGAAGAAATGCAATTTGCACCTGGTGGACATTTGGAACGTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTGGACCCAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp AACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACAACTGCTGTGGGTAGTTaGAGAACTTCCCGAAGGAAT +
Preference number: 5 (lower is better)
Translates to: NQCELSNPRLPYLQYLSTTAVGS*RTSRRN
Trigger: ATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGT...TGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGAGCAAAGGTTCACGGCTaGAAGCACAGCTCAGGGACT +
Preference number: 5 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRAKVHG*KHSSGT
Trigger: AGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGC...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS GCA 90 bp GAGTTCTATGTTTGGGTCCAGGTTATTCAAAGCGTTTTCGCGCAATaGTTCAATGACGTTCCAAATGTCCACCAGGTGCAAATTGCATTT +
Preference number: 5 (lower is better)
Translates to: EFYVWVQVIQSVFAQ*FNDVPNVHQVQIAF
Trigger: AAATGCAATTTGCACCTGGTGGACATTTGGAACGTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTGGACCCAAACATAGAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp TTGAACAGAATGGACAGACGGATGAAACCTGCTGGGTTTGCATTTAGAACAGGCGTAGCCAAAGCCATTTaGACAGCAAATACTGAGATT +
Preference number: 5 (lower is better)
Translates to: LNRMDRRMKPAGFAFRTGVAKAI*TANTEI
Trigger: AATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTAC...GCCTGTTCTAAATGCAAACCCAGCAGGTTTCATCCGTCTGTCCATTCTGTTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp CACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAGGTGACCTTTTTCTGTaGGGAGAAACAGGATCTGGC +
Preference number: 5 (lower is better)
Translates to: HKIYRNLWFTGNKTRGLKGDLFL*GETGSG
Trigger: GCCAGATCCTGTTTCTCCCAACAGAAAAAGGTCACC...TTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp TCTTACAGGATTGAACACATCTATGAGCACAGGATGGGTGGCATAGCTTATGTTGTAGTTGTGACACTGTaGACATCGGTATCGAAATCC +
Preference number: 5 (lower is better)
Translates to: SYRIEHIYEHRMGGIAYVVVVTL*TSVSKS
Trigger: GGATTTCGATACCGATGTCAACAGTGTCACAACTAC...AACATAAGCTATGCCACCCATCCTGTGCTCATAGATGTGTTCAATCCTGTAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGAAAGCACAGCTCAGGGACTaGCTTAATGCATTCGTTAGC +
Preference number: 5 (lower is better)
Translates to: HKIYRNLWFTGNKTRGLKAQLRD*LNAFVS
Trigger: GCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTGC...TTTCAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp AATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACACTTAGCCCTAGCCAGCATTTaGTTCTGTTCTACTTCACTG +
Preference number: 5 (lower is better)
Translates to: NVSSATQGCHIYSIYLHLALASI*FCSTSL
Trigger: CAGTGAAGTAGAACAGAACAAAATGCTGGCTAGGGC...TAAGTGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGAGATGCGATCCAGATCTaGAGCCCTCATCTCTGCAAA +
Preference number: 5 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRDAIQI*SPHLCK
Trigger: TTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATC...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp CCAAGGCTGCCATATTTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAGATGCGATCCAGATCTaGAGCCCTCATCTCTGCAAA +
Preference number: 5 (lower is better)
Translates to: PRLPYLQYLSTLNSQELIDAIQI*SPHLCK
Trigger: TTTGCAGAGATGAGGGCTCAAGATCTGGATCGCATC...TATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAAATATGGCAGCCTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp GGATCTGAACAAAACCTTCCCAAGGAATCACAAGTTGTTCTCCCTTCTCAACACAACTTCCCGAAGGAATaGGTCATATCTTCCATATAC +
Preference number: 5 (lower is better)
Translates to: GSEQNLPKESQVVLPSQHNFPKE*VISSIY
Trigger: GTATATGGAAGATATGACCAATTCCTTCGGGAAGTT...GTGTTGAGAAGGGAGAACAACTTGTGATTCCTTGGGAAGGTTTTGTTCAGATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CATGGCCACTTGCAATCCACCACTGCATTTTTCTATTATATTCCTTGGTACTTTACTGCTGTGGGTAGTTaGAGAACTTCCCGAAGGAAT +
Preference number: 5 (lower is better)
Translates to: HGHLQSTTAFFYYIPWYFTAVGS*RTSRRN
Trigger: ATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGT...AAAGTACCAAGGAATATAATAGAAAAATGCAGTGGTGGATTGCAAGTGGCCATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CTCAAAGAGCATAACATGAATTTGAAACTTAACACCCTCGAGGATCTGAACAAAGCACAGCTCAGGGACTaGCTTAATGCATTCGTTAGC +
Preference number: 5 (lower is better)
Translates to: LKEHNMNLKLNTLEDLNKAQLRD*LNAFVS
Trigger: GCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTGC...TTTGTTCAGATCCTCGAGGGTGTTAAGTTTCAAATTCATGTTATGCTCTTTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp ATTTGTTCATCTTCTCATAGAACTATCTCAATGGGGCTGGATTTGATGGGGTCCTGCAATCAGCTGCCTTaGCTGTTTATTTGCATCGAT +
Preference number: 5 (lower is better)
Translates to: ICSSSHRTISMGLDLMGSCNQLP*LFICID
Trigger: ATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCA...GGACCCCATCAAATCCAGCCCCATTGAGATAGTTCTATGAGAAGATGAACAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221880.2
CDS-3UTR CAA 90 bp CCAAGGCTGCCATATTTACAGTATCTATCTACACTTAACAGCCAAGAACTAATAAGCATACATGGTGGGTaGTTCCGGAGCATGTTGACA +
Preference number: 5 (lower is better)
Translates to: PRLPYLQYLSTLNSQELISIHGG*FRSMLT
Trigger: TGTCAACATGCTCCGGAACAACCCACCATGTATGCT...TATTAGTTCTTGGCTGTTAAGTGTAGATAGATACTGTAAATATGGCAGCCTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp AACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACTGTCCACCAGGTGCAAATaGCATTTCTTCTGCACAAAT +
Preference number: 5 (lower is better)
Translates to: NHKIYRNLWFTGNKTRGLSTRCK*HFFCTN
Trigger: ATTTGTGCAGAAGAAATGCAATTTGCACCTGGTGGA...CAGTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp AACCAATGTGAGCTCAGCAACCCAAGGCTGCCATATTTACAGTATCTATCTACAAACTTCCCGAAGGAATaGGTCATATCTTCCATATAC +
Preference number: 5 (lower is better)
Translates to: NQCELSNPRLPYLQYLSTNFPKE*VISSIY
Trigger: GTATATGGAAGATATGACCAATTCCTTCGGGAAGTT...TGTAGATAGATACTGTAAATATGGCAGCCTTGGGTTGCTGAGCTCACATTGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGAACTGCTGTGGGTAGTTaGAGAACTTCCCGAAGGAAT +
Preference number: 5 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRTAVGS*RTSRRN
Trigger: ATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGT...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp AGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGGACGTAGCCAAAGCCATTTaGACAGCAAATACTGAGATT +
Preference number: 5 (lower is better)
Translates to: RTTRFIEICGSQGTRQEDVAKAI*TANTEI
Trigger: AATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTAC...GTCCTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp ACAGTGATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGAGTAGTTGTGACACTGTaGACATCGGTATCGAAATCC +
Preference number: 5 (lower is better)
Translates to: TVIRTTRFIEICGSQGTRVVVTL*TSVSKS
Trigger: GGATTTCGATACCGATGTCAACAGTGTCACAACTAC...TCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTATCACTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS-3UTR CAA 90 bp ATGAACCTTCCCTGCCTTATTATAGATCATCCGATAATCCATCTTCATAGTCTCTGCAATCAGCTGCCTTaGCTGTTTATTTGCATCGAT +
Preference number: 5 (lower is better)
Translates to: MNLPCLIIDHPIIHLHSLCNQLP*LFICID
Trigger: ATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCA...GAGACTATGAAGATGGATTATCGGATGATCTATAATAAGGCAGGGAAGGTTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp GCAGACATCAGTGCTAAATTATATCGCAACAGTTTGGCTCATGCATATAAGAAAGTAGCCAAAGCCATTTaGACAGCAAATACTGAGATT +
Preference number: 5 (lower is better)
Translates to: ADISAKLYRNSLAHAYKKVAKAI*TANTEI
Trigger: AATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTAC...TTTCTTATATGCATGAGCCAAACTGTTGCGATATAATTTAGCACTGATGTCTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS-3UTR CAA 90 bp ATAAGAACCACAAGATTTATAGAAATCTGTGGTTCACAGGGAACAAGACAAGAGAACTTCCCGAAGGAATaGGTCATATCTTCCATATAC +
Preference number: 5 (lower is better)
Translates to: IRTTRFIEICGSQGTRQENFPKE*VISSIY
Trigger: GTATATGGAAGATATGACCAATTCCTTCGGGAAGTT...CTCTTGTCTTGTTCCCTGTGAACCACAGATTTCTATAAATCTTGTGGTTCTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047954.15
CDS TCA 72 bp CTGCGGGGTGTGCGTTGGTGTGGGACAGGCAGATGCTaGACGGATGGGCATGGGGATCGGCCTGCTGATGGT +
Preference number: 6 (lower is better)
Translates to: LRGVRWCGTGRC*TDGHGDRPADG
Trigger: ACCATCAGCAGGCCGATCCCCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 72 bp TCTTGCACATCTCCGCCTACCCCAGTGAGGGAGTCCTaGGGGGTGTGCGTTGGTGTGGGACAGGCAGATGCT +
Preference number: 6 (lower is better)
Translates to: SCTSPPTPVRES*GVCVGVGQADA
Trigger: AGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTCACTGGGGTAGGCGGAGATGTGCAAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS CAA 72 bp CCCCATCTTCCGGGACCATGTCACCATGCGTGGTACTaGCAGCTCCACCGTGAATGTACCCAGGTTTCCGGG +
Preference number: 6 (lower is better)
Translates to: PHLPGPCHHAWY*QLHRECTQVSG
Trigger: CCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGTCCCGGAAGATGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 72 bp CCCATCTTCCGGGACCATGTCACCATGCGTGGTACTTaGAGCTCCACCGTGAATGTACCCAGGTTTCCGGGA +
Preference number: 6 (lower is better)
Translates to: PIFRDHVTMRGT*SSTVNVPRFPG
Trigger: TCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGTCCCGGAAGATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS CAA 90 bp CTCCAGCTGCCGCACAGACTCGTTCTCATAATTGCCATCCTCGGGTaGCGTGTAAGGATCCCCATCTTCCGGGACCATGTCACCATGCGT +
Preference number: 6 (lower is better)
Translates to: LQLPHRLVLIIAILG*RVRIPIFRDHVTMR
Trigger: ACGCATGGTGACATGGTCCCGGAAGATGGGGATCCTTACACGCAACCCGAGGATGGCAATTATGAGAACGAGTCTGTGCGGCAGCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 72 bp AACACACGCCATTTTGTCTCGGCTACAGGACAGGGGTaGTTGAGTCTGGTCTCAGTGCTGACGTGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: NTRHFVSATGQG*LSLVSVLTWSW
Trigger: CCAGCTCCACGTCAGCACTGAGACCAGACTCAAGCACCCCTGTCCTGTAGCCGAGACAAAATGGCGTGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222726.2
CDS CCA 72 bp ATGAGGAGGATTCTGCTGCCAGTCGTGCGGCGTACCTaGCGATCAGCCTGTGTTCTTCATCAAGCCGGTTTG +
Preference number: 6 (lower is better)
Translates to: MRRILLPVVRRT*RSACVLHQAGL
Trigger: CAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAATCCTCCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp GGTCAAAGGCTGCGAGCAGGAAGTTCAGCAGGAGACTaGTGGACTGCTCCACGTGGATTTGGTGAGTGGTTG +
Preference number: 6 (lower is better)
Translates to: GQRLRAGSSAGD*WTAPRGFGEWL
Trigger: CAACCACTCACCAAATCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACTTCCTGCTCGCAGCCTTTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp TGGTTACAGGTCTCGGAGGCACGATGTGAGCCAAGTTaGGTGGCTTTTCAGGCTGGTCTGGGAACATGGGGT +
Preference number: 6 (lower is better)
Translates to: WLQVSEARCEPS*VAFQAGLGTWG
Trigger: ACCCCATGTTCCCAGACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAGACCTGTAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp ACCATGTCACCATGCGTGGTACTTGCAGCTCCACCGTaGATGTACCCAGGTTTCCGGGAGTGGATTTGGGCT +
Preference number: 6 (lower is better)
Translates to: TMSPCVVLAAPP*MYPGFREWIWA
Trigger: AGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 72 bp TTGAGTGGCTTTTCAGGCTGGTCTGGGAACATGGGGTaGAAAGGTTCACGGCTTGAAGCACAGCTCAGGGAC +
Preference number: 6 (lower is better)
Translates to: LSGFSGWSGNMG*KGSRLEAQLRD
Trigger: GTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAGCCACTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CCA 72 bp CACCGCCTCCAGGCGGGCCACGTTGAGTTCTATGTTTaGGTCCAGGTTATTCAAAGCGTTTTCGCGCAATGC +
Preference number: 6 (lower is better)
Translates to: HRLQAGHVEFYV*VQVIQSVFAQC
Trigger: GCATTGCGCGAAAACGCTTTGAATAACCTGGACCCAAACATAGAACTCAACGTGGCCCGCCTGGAGGCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CCA 72 bp TACAGGTCTCGGAGGCACGATGTGAGCCAAGTTGAGTaGCTTTTCAGGCTGGTCTGGGAACATGGGGTGCAA +
Preference number: 6 (lower is better)
Translates to: YRSRRHDVSQVE*LFRLVWEHGVQ
Trigger: TTGCACCCCATGTTCCCAGACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAGACCTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CCA 72 bp AAGGATCCCCATCTTCCGGGACCATGTCACCATGCGTaGTACTTGCAGCTCCACCGTGAATGTACCCAGGTT +
Preference number: 6 (lower is better)
Translates to: KDPHLPGPCHHA*YLQLHRECTQV
Trigger: AACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGTCCCGGAAGATGGGGATCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS CAA 90 bp TGTAAGGATCCCCATCTTCCGGGACCATGTCACCATGCGTGGTACTaGCAGCTCCACCGTGAATGTACCCAGGTTTCCGGGAGTGGATTT +
Preference number: 6 (lower is better)
Translates to: CKDPHLPGPCHHAWY*QLHRECTQVSGSGF
Trigger: AAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGTCCCGGAAGATGGGGATCCTTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS GCA 72 bp AGGAGGGAACAGAGTGGGAAAAGAGTGTGTCGTTCATaGTGGTTACAGGTCTCGGAGGCACGATGTGAGCCA +
Preference number: 6 (lower is better)
Translates to: RREQSGKRVCRS*WLQVSEARCEP
Trigger: TGGCTCACATCGTGCCTCCGAGACCTGTAACCAGCATGAACGACACACTCTTTTCCCACTCTGTTCCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS GCA 72 bp CTTAGATTCCTTCTCGAACTTTGTGCAAACGCCTCTTaGACATCTCCGCCTACCCCAGTGAGGGAGTCCTGC +
Preference number: 6 (lower is better)
Translates to: LRFLLELCANAS*TSPPTPVRESC
Trigger: GCAGGACTCCCTCACTGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGGAATCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS CAA 72 bp GCTGGTCTGGGAACATGGGGTGCAAAGGTTCACGGCTaGAAGCACAGCTCAGGGACTTGCTTAATGCATTCG +
Preference number: 6 (lower is better)
Translates to: AGLGTWGAKVHG*KHSSGTCLMHS
Trigger: CGAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 72 bp CCCTTCAGAAAGGCGGGAGCAGCCCTAGCCAGCATTTaGTTCTGTTCTACTTCACTGTCCTTGGGAGGAGAG +
Preference number: 6 (lower is better)
Translates to: PFRKAGAALASI*FCSTSLSLGGE
Trigger: CTCTCCTCCCAAGGACAGTGAAGTAGAACAGAACAAAATGCTGGCTAGGGCTGCTCCCGCCTTTCTGAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp CCTGGCGATCAGCCTGTGTTCTTCATCAAGCCGGTTTaGACTCTCAAGCATACATGGTGGGTTGTTCCGGAG +
Preference number: 6 (lower is better)
Translates to: PGDQPVFFIKPV*TLKHTWWVVPE
Trigger: CTCCGGAACAACCCACCATGTATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS GCA 72 bp CATTCTCCAGCTGCCGCACAGACTCGTTCTCATAATTaGCATCCTCGGGTTGCGTGTAAGGATCCCCATCTT +
Preference number: 6 (lower is better)
Translates to: HSPAAAQTRSHN*HPRVACKDPHL
Trigger: AAGATGGGGATCCTTACACGCAACCCGAGGATGGCAATTATGAGAACGAGTCTGTGCGGCAGCTGGAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS CCA 72 bp AGGGAACAGAGTGGGAAAAGAGTGTGTCGTTCATGCTaGTTACAGGTCTCGGAGGCACGATGTGAGCCAAGT +
Preference number: 6 (lower is better)
Translates to: REQSGKRVCRSC*LQVSEARCEPS
Trigger: ACTTGGCTCACATCGTGCCTCCGAGACCTGTAACCAGCATGAACGACACACTCTTTTCCCACTCTGTTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 72 bp AAAATAGTGGAGAGCACCGCCTCCAGGCGGGCCACGTaGAGTTCTATGTTTGGGTCCAGGTTATTCAAAGCG +
Preference number: 6 (lower is better)
Translates to: KIVESTASRRAT*SSMFGSRLFKA
Trigger: CGCTTTGAATAACCTGGACCCAAACATAGAACTCAACGTGGCCCGCCTGGAGGCGGTGCTCTCCACTATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 72 bp GTTCAGCAGGAGACTGATGGACTGCTCCACGTGGATTaGGTGAGTGGTTGGCATCCTCTTGTTGAGCTGGTA +
Preference number: 6 (lower is better)
Translates to: VQQETDGLLHVD*VSGWHPLVELV
Trigger: TACCAGCTCAACAAGAGGATGCCAACCACTCACCAAATCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 90 bp GCCCCTCCAGAAGCAGTCCTGGCAAAGCTGGTAGTTGTGACACTGTaGACATCGGTATCGAAATCCCATCATGCTCTCACTGTGACAGTA +
Preference number: 6 (lower is better)
Translates to: APPEAVLAKLVVVTL*TSVSKSHHALTVTV
Trigger: TACTGTCACAGTGAGAGCATGATGGGATTTCGATACCGATGTCAACAGTGTCACAACTACCAGCTTTGCCAGGACTGCTTCTGGAGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 90 bp GCTTTTCAGGCTGGTCTGGGAACATGGGGTGCAAAGGTTCACGGCTaGAAGCACAGCTCAGGGACTTGCTTAATGCATTCGTTAGCTTCT +
Preference number: 6 (lower is better)
Translates to: AFQAGLGTWGAKVHG*KHSSGTCLMHSLAS
Trigger: AGAAGCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp CAATCAGCTGCCTTTGCTGTTTATTTGCATCGATGGTaGAGGAGATGTCAGGGGCACTCCTCTGCTGTGTGG +
Preference number: 6 (lower is better)
Translates to: QSAAFAVYLHRW*RRCQGHSSAVW
Trigger: CCACACAGCAGAGGAGTGCCCCTGACATCTCCTTCACCATCGATGCAAATAAACAGCAAAGGCAGCTGATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS GCA 72 bp ACTGGATGGAAGACATTTTCTACATTTGCCAGTCGGTaGAGAAGAGGCAGCCATACCAGGCACTGTGGAGGA +
Preference number: 6 (lower is better)
Translates to: TGWKTFSTFASR*RRGSHTRHCGG
Trigger: TCCTCCACAGTGCCTGGTATGGCTGCCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTCTTCCATCCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 72 bp ACCTGGCGATCAGCCTGTGTTCTTCATCAAGCCGGTTaGAACTCTCAAGCATACATGGTGGGTTGTTCCGGA +
Preference number: 6 (lower is better)
Translates to: TWRSACVLHQAG*NSQAYMVGCSG
Trigger: TCCGGAACAACCCACCATGTATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp CCTGGCGATCAGCCTGTGTTCTTCATCAAGCCGGTTTaGACTCTCAAGCATACTCCTGGTGATGAAAGGACT +
Preference number: 6 (lower is better)
Translates to: PGDQPVFFIKPV*TLKHTPGDERT
Trigger: AGTCCTTTCATCACCAGGAGTATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115832.4
CDS TCA 72 bp TTCTCAGAGGTCGGTGATGGAGCCAGATCCTCAAACTaGGGTCTCGAGAACTCGGAATCCACAGTACTTTCT +
Preference number: 6 (lower is better)
Translates to: FSEVGDGARSSN*GLENSESTVLS
Trigger: AGAAAGTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115832.4
ENSMUST00000220904.2
CDS CAA 72 bp GAAGCAGTCCTGGCAAAGCTGGTAGTTGTGACACTGTaGACATCGGTATCGAAATCCCATCATGCTCTCACT +
Preference number: 6 (lower is better)
Translates to: EAVLAKLVVVTL*TSVSKSHHALT
Trigger: AGTGAGAGCATGATGGGATTTCGATACCGATGTCAACAGTGTCACAACTACCAGCTTTGCCAGGACTGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS GCA 72 bp CAAATTGCATTTCTTCTGCACAAATCTCAGCTTGCATaGTGTTCTGTAGGTGGAGAGTCGGATGCGATCCAG +
Preference number: 6 (lower is better)
Translates to: QIAFLLHKSQLA*CSVGGESDAIQ
Trigger: CTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTGAGATTTGTGCAGAAGAAATGCAATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS GCA 72 bp GTTTGGGTCCAGGTTATTCAAAGCGTTTTCGCGCAATaGTTCAATGACGTTCCAAATGTCCACCAGGTGCAA +
Preference number: 6 (lower is better)
Translates to: VWVQVIQSVFAQ*FNDVPNVHQVQ
Trigger: TTGCACCTGGTGGACATTTGGAACGTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTGGACCCAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS GCA 72 bp TGTGACACTGTTGACATCGGTATCGAAATCCCATCATaGTCTCACTGTGACAGTAGGAACACTCAACTGGAT +
Preference number: 6 (lower is better)
Translates to: CDTVDIGIEIPS*SHCDSRNTQLD
Trigger: ATCCAGTTGAGTGTTCCTACTGTCACAGTGAGAGCATGATGGGATTTCGATACCGATGTCAACAGTGTCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CCA 72 bp ACTGCTGTGGGTAGTTTGAGAACTTCCCGAAGGAATTaGTCATATCTTCCATATACCATCACTCCACTGGAG +
Preference number: 6 (lower is better)
Translates to: TAVGSLRTSRRN*SYLPYTITPLE
Trigger: CTCCAGTGGAGTGATGGTATATGGAAGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CCA 72 bp CATCATGCTCTCACTGTGACAGTAGGAACACTCAACTaGATGGAAGACATTTTCTACATTTGCCAGTCGGTG +
Preference number: 6 (lower is better)
Translates to: HHALTVTVGTLN*MEDIFYICQSV
Trigger: CACCGACTGGCAAATGTAGAAAATGTCTTCCATCCAGTTGAGTGTTCCTACTGTCACAGTGAGAGCATGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp CCAGGTTATTCAAAGCGTTTTCGCGCAATGCTTCAATaGCGTTCCAAATGTCCACCAGGTGCAAATTGCATT +
Preference number: 6 (lower is better)
Translates to: PGYSKRFRAMLQ*RSKCPPGANCI
Trigger: AATGCAATTTGCACCTGGTGGACATTTGGAACGTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 90 bp AACTTGTCCATGATCTTTCCTCCACACAATGTAGCCAAAGCCATTTaGACAGCAAATACTGAGATTTTTCCATGGCCTTCCGGGTCAAAG +
Preference number: 6 (lower is better)
Translates to: NLSMIFPPHNVAKAI*TANTEIFPWPSGSK
Trigger: CTTTGACCCGGAAGGCCATGGAAAAATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTACATTGTGTGGAGGAAAGATCATGGACAAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 72 bp CCAAATGAAGGACCTTCAAAAACTGCTGTGGGTAGTTaGAGAACTTCCCGAAGGAATTGGTCATATCTTCCA +
Preference number: 6 (lower is better)
Translates to: PNEGPSKTAVGS*RTSRRNWSYLP
Trigger: TGGAAGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGTTTTTGAAGGTCCTTCATTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS TCA 72 bp CAAATGAAGGACCTTCAAAAACTGCTGTGGGTAGTTTaGGAACTTCCCGAAGGAATTGGTCATATCTTCCAT +
Preference number: 6 (lower is better)
Translates to: QMKDLQKLLWVV*ELPEGIGHIFH
Trigger: ATGGAAGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGTTTTTGAAGGTCCTTCATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2
CDS CAA 72 bp ATGATCTTTCCTCCACACAATGTAGCCAAAGCCATTTaGACAGCAAATACTGAGATTTTTCCATGGCCTTCC +
Preference number: 6 (lower is better)
Translates to: MIFPPHNVAKAI*TANTEIFPWPS
Trigger: GGAAGGCCATGGAAAAATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTACATTGTGTGGAGGAAAGATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000047954.15
ENSMUST00000115832.4
ENSMUST00000220904.2
ENSMUST00000221880.2