Pregenerated sensors for DTHD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090326Ensembl transcript IDs: ENSMUST00000170704.2, ENSMUST00000238474.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTTAAGTTTGATGAGCTGGACTGTGCTGCGGCGCAGTGGGAGGGATaGAGCGAGGACCTCAGCACCTTCTTCAGCGAGTTCCTCAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: LKFDELDCAAAQWEG*SEDLSTFFSEFLSQ Trigger: CTGGCTGAGGAACTCGCTGAAGAAGGTGCTGAGGTCCTCGCTGCATCCCTCCCACTGCGCCGCAGCACAGTCCAGCTCATCAAACTTAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | ATCGGGATGCTTAAGTTTGATGAGCTGGACTGTGCTGCGGCGCAGTaGGAGGGATGCAGCGAGGACCTCAGCACCTTCTTCAGCGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: IGMLKFDELDCAAAQ*EGCSEDLSTFFSEF Trigger: GAACTCGCTGAAGAAGGTGCTGAGGTCCTCGCTGCATCCCTCCCACTGCGCCGCAGCACAGTCCAGCTCATCAAACTTAAGCATCCCGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | GCGAGGACCTCAGCACCTTCTTCAGCGAGTTCCTCAGCCAGCCAGTaGAGCAAGTTATCCCAAAGGGCCACTAGGGGGTCTGTAGAAACT | + |
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Preference number: 5 (lower is better) Translates to: ARTSAPSSASSSASQ*SKLSQRATRGSVET Trigger: AGTTTCTACAGACCCCCTAGTGGCCCTTTGGGATAACTTGCTCCACTGGCTGGCTGAGGAACTCGCTGAAGAAGGTGCTGAGGTCCTCGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | TGGATCTGCTCTGTTGGATCATCGGGATGCTTAAGTTTGATGAGCTaGACTGTGCTGCGGCGCAGTGGGAGGGATGCAGCGAGGACCTCA | + |
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Preference number: 5 (lower is better) Translates to: WICSVGSSGCLSLMS*TVLRRSGRDAARTS Trigger: TGAGGTCCTCGCTGCATCCCTCCCACTGCGCCGCAGCACAGTCCAGCTCATCAAACTTAAGCATCCCGATGATCCAACAGAGCAGATCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS GCA 90 bp | CAGAAGCAAAGGAGTTCGTGGATCTGCTCTGTTGGATCATCGGGATaGTTAAGTTTGATGAGCTGGACTGTGCTGCGGCGCAGTGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: QKQRSSWICSVGSSG*LSLMSWTVLRRSGR Trigger: CCTCCCACTGCGCCGCAGCACAGTCCAGCTCATCAAACTTAAGCATCCCGATGATCCAACAGAGCAGATCCACGAACTCCTTTGCTTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | AATTTGAGCTCTTCTGTGAGATCACCGCGGCCCATTTTGCGGAGATaGCGCGCCAGGAGACGAATTTTGTCAGTGGAAGTCGGGAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: NLSSSVRSPRPILRR*RARRRILSVEVGSD Trigger: ATCACTCCCGACTTCCACTGACAAAATTCGTCTCCTGGCGCGCCATCTCCGCAAAATGGGCCGCGGTGATCTCACAGAAGAGCTCAAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 90 bp | GAGATGGCGCGCCAGGAGACGAATTTTGTCAGTGGAAGTCGGGAGTaGTCTTTTCCAGAAGCAAAGGAGTTCGTGGATCTGCTCTGTTGG | + |
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Preference number: 5 (lower is better) Translates to: EMARQETNFVSGSRE*SFPEAKEFVDLLCW Trigger: CCAACAGAGCAGATCCACGAACTCCTTTGCTTCTGGAAAAGATCACTCCCGACTTCCACTGACAAAATTCGTCTCCTGGCGCGCCATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS GCA 90 bp | GGACCTGTTGAAATAGGAGGGTGTTTGCAGGCTCCTGTGCACTGTTaGACTCTCTGGTCTCCTGTGATCTTTCTCAGACTCAAGGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: GPVEIGGCLQAPVHC*TLWSPVIFLRLKVL Trigger: AAGAACCTTGAGTCTGAGAAAGATCACAGGAGACCAGAGAGTGCAACAGTGCACAGGAGCCTGCAAACACCCTCCTATTTCAACAGGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 90 bp | ATGCACTGTTACCAGGTTTTCGGAGAGATGGACTTTTGGACCTGTTaGAATAGGAGGGTGTTTGCAGGCTCCTGTGCACTGTTGCACTCT | + |
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Preference number: 5 (lower is better) Translates to: MHCYQVFGEMDFWTC*NRRVFAGSCALLHS Trigger: AGAGTGCAACAGTGCACAGGAGCCTGCAAACACCCTCCTATTTCAACAGGTCCAAAAGTCCATCTCTCCGAAAACCTGGTAACAGTGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | TTAGTTCCCTTCTTGGAGCAATGTCTGTTGCTTTGGTATCCTGAATaGCTGATATTGTCTGCTGTGGAGTACGGTCCTCATGCATGCTGC | + |
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Preference number: 5 (lower is better) Translates to: LVPFLEQCLLLWYPE*LILSAVEYGPHACC Trigger: GCAGCATGCATGAGGACCGTACTCCACAGCAGACAATATCAGCCATTCAGGATACCAAAGCAACAGACATTGCTCCAAGAAGGGAACTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 90 bp | GAAGGGACCCTGCAGTGTGTTCCAAAAGTTGATAAAGGGCTTCATTaGGTCTTTGACCCAAAAAGATCACTGTGGCTATCCAAGTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: EGTLQCVPKVDKGLH*VFDPKRSLWLSKWL Trigger: GAGCCACTTGGATAGCCACAGTGATCTTTTTGGGTCAAAGACTCAATGAAGCCCTTTATCAACTTTTGGAACACACTGCAGGGTCCCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS TCA 90 bp | ACATTTAGTTCCCTTCTTGGAGCAATGTCTGTTGCTTTGGTATCCTaGATGGCTGATATTGTCTGCTGTGGAGTACGGTCCTCATGCATG | + |
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Preference number: 5 (lower is better) Translates to: TFSSLLGAMSVALVS*MADIVCCGVRSSCM Trigger: CATGCATGAGGACCGTACTCCACAGCAGACAATATCAGCCATTCAGGATACCAAAGCAACAGACATTGCTCCAAGAAGGGAACTAAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 90 bp | TCACCACAACATCATCAATCCCAAACCAACCACTGTCTCGGCTCCTaGATCCTAGTAATTTTAAAGTTTCACATGCACTGTTACCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: SPQHHQSQTNHCLGS*ILVILKFHMHCYQV Trigger: AACCTGGTAACAGTGCATGTGAAACTTTAAAATTACTAGGATTCAGGAGCCGAGACAGTGGTTGGTTTGGGATTGATGATGTTGTGGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | AACCTCTCTAAGTGTTCACATAATTCAAATGATACCAAGCCACTCTaGACAGTTCTCACCACAACATCATCAATCCCAAACCAACCACTG | + |
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Preference number: 5 (lower is better) Translates to: NLSKCSHNSNDTKPL*TVLTTTSSIPNQPL Trigger: CAGTGGTTGGTTTGGGATTGATGATGTTGTGGTGAGAACTGTCCAGAGTGGCTTGGTATCATTTGAATTATGTGAACACTTAGAGAGGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | ATGTTTCCAGTAAACCTCAAAAGAAGTTGTTCTCCTTCTCTTACTTaGAATTGTCTAGATGATTCTGGTCCTCCAAACCCTTCTGAGCGC | + |
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Preference number: 5 (lower is better) Translates to: MFPVNLKRSCSPSLT*NCLDDSGPPNPSER Trigger: GCGCTCAGAAGGGTTTGGAGGACCAGAATCATCTAGACAATTCCAAGTAAGAGAAGGAGAACAACTTCTTTTGAGGTTTACTGGAAACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 90 bp | TTTTTCATCTTCATTTTCTGCATTATCTGGGAACACTGTGCTCTGTaGCTCTTCTTGCCCTATTACATTTCCACTCAATGGGTCATTGTT | + |
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Preference number: 5 (lower is better) Translates to: FFIFIFCIIWEHCAL*LFLPYYISTQWVIV Trigger: AACAATGACCCATTGAGTGGAAATGTAATAGGGCAAGAAGAGTCACAGAGCACAGTGTTCCCAGATAATGCAGAAAATGAAGATGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 90 bp | ATGAGGCAGTCTATGAAAGCGATAATTTCTTGTCTCCAGATACATTaGTTATCCTTGTCAAGTAGTATATACAGCTGTTGGCAGGTAGAC | + |
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Preference number: 5 (lower is better) Translates to: MRQSMKAIISCLQIH*LSLSSSIYSCWQVD Trigger: GTCTACCTGCCAACAGCTGTATATACTACTTGACAAGGATAATCAATGTATCTGGAGACAAGAAATTATCGCTTTCATAGACTGCCTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS TCA 90 bp | TGGAATTGTAATGCATATTGGGAATGGAATTTCCTTGTCCTTATCTaGGCATTCAACAGTGATGACATTGCTGACCAACTCTTCATTATC | + |
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Preference number: 5 (lower is better) Translates to: WNCNAYWEWNFLVLI*AFNSDDIADQLFII Trigger: GATAATGAAGAGTTGGTCAGCAATGTCATCACTGTTGAATGCTCAGATAAGGACAAGGAAATTCCATTCCCAATATGCATTACAATTCCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 90 bp | TTTCACCATGATGTCTCTGTAATTTCCCTTGTAGCATGCCTTGAATaGAATTGTAATGCATATTGGGAATGGAATTTCCTTGTCCTTATC | + |
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Preference number: 5 (lower is better) Translates to: FHHDVSVISLVACLE*NCNAYWEWNFLVLI Trigger: GATAAGGACAAGGAAATTCCATTCCCAATATGCATTACAATTCCATTCAAGGCATGCTACAAGGGAAATTACAGAGACATCATGGTGAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS GCA 72 bp | GATGAGCTGGACTGTGCTGCGGCGCAGTGGGAGGGATaGAGCGAGGACCTCAGCACCTTCTTCAGCGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: DELDCAAAQWEG*SEDLSTFFSEF Trigger: GAACTCGCTGAAGAAGGTGCTGAGGTCCTCGCTGCATCCCTCCCACTGCGCCGCAGCACAGTCCAGCTCATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | CTTAAGTTTGATGAGCTGGACTGTGCTGCGGCGCAGTaGGAGGGATGCAGCGAGGACCTCAGCACCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LKFDELDCAAAQ*EGCSEDLSTFF Trigger: GAAGAAGGTGCTGAGGTCCTCGCTGCATCCCTCCCACTGCGCCGCAGCACAGTCCAGCTCATCAAACTTAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | TCAGCACCTTCTTCAGCGAGTTCCTCAGCCAGCCAGTaGAGCAAGTTATCCCAAAGGGCCACTAGGGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SAPSSASSSASQ*SKLSQRATRGS Trigger: AGACCCCCTAGTGGCCCTTTGGGATAACTTGCTCCACTGGCTGGCTGAGGAACTCGCTGAAGAAGGTGCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | TGGATCTGCTCTGTTGGATCATCGGGATGCTTAAGTTaGATGAGCTGGACTGTGCTGCGGCGCAGTGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: WICSVGSSGCLS*MSWTVLRRSGR Trigger: CCTCCCACTGCGCCGCAGCACAGTCCAGCTCATCAAACTTAAGCATCCCGATGATCCAACAGAGCAGATCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | TCACCGCGGCCCATTTTGCGGAGATGGCGCGCCAGGAGACGAATTTaGTCAGTGGAAGTCGGGAGTGATCTTTTCCAGAAGCAAAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: SPRPILRRWRARRRI*SVEVGSDLFQKQRS Trigger: ACTCCTTTGCTTCTGGAAAAGATCACTCCCGACTTCCACTGACAAAATTCGTCTCCTGGCGCGCCATCTCCGCAAAATGGGCCGCGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS GCA 72 bp | AGGAGTTCGTGGATCTGCTCTGTTGGATCATCGGGATaGTTAAGTTTGATGAGCTGGACTGTGCTGCGGCGC | + |
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Preference number: 6 (lower is better) Translates to: RSSWICSVGSSG*LSLMSWTVLRR Trigger: GCGCCGCAGCACAGTCCAGCTCATCAAACTTAAGCATCCCGATGATCCAACAGAGCAGATCCACGAACTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | TGCGGAGATGGCGCGCCAGGAGACGAATTTTGTCAGTaGAAGTCGGGAGTGATCTTTTCCAGAAGCAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: CGDGAPGDEFCQ*KSGVIFSRSKG Trigger: TCCTTTGCTTCTGGAAAAGATCACTCCCGACTTCCACTGACAAAATTCGTCTCCTGGCGCGCCATCTCCGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | CCCATTTTGCGGAGATGGCGCGCCAGGAGACGAATTTaGTCAGTGGAAGTCGGGAGTGATCTTTTCCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: PILRRWRARRRI*SVEVGSDLFQK Trigger: CTTCTGGAAAAGATCACTCCCGACTTCCACTGACAAAATTCGTCTCCTGGCGCGCCATCTCCGCAAAATGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | AATTTGAGCTCTTCTGTGAGATCACCGCGGCCCATTTaGCGGAGATGGCGCGCCAGGAGACGAATTTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: NLSSSVRSPRPI*RRWRARRRILS Trigger: TGACAAAATTCGTCTCCTGGCGCGCCATCTCCGCAAAATGGGCCGCGGTGATCTCACAGAAGAGCTCAAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | TCCCATTTGAATTTGAGCTCTTCTGTGAGATCACCGCGGCCCATTTaGCGGAGATGGCGCGCCAGGAGACGAATTTTGTCAGTGGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: SHLNLSSSVRSPRPI*RRWRARRRILSVEV Trigger: GACTTCCACTGACAAAATTCGTCTCCTGGCGCGCCATCTCCGCAAAATGGGCCGCGGTGATCTCACAGAAGAGCTCAAATTCAAATGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS GCA 72 bp | GAAATAGGAGGGTGTTTGCAGGCTCCTGTGCACTGTTaGACTCTCTGGTCTCCTGTGATCTTTCTCAGACTC | + |
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Preference number: 6 (lower is better) Translates to: EIGGCLQAPVHC*TLWSPVIFLRL Trigger: GAGTCTGAGAAAGATCACAGGAGACCAGAGAGTGCAACAGTGCACAGGAGCCTGCAAACACCCTCCTATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | GGGTGTTTGCAGGCTCCTGTGCACTGTTGCACTCTCTaGTCTCCTGTGATCTTTCTCAGACTCAAGGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: GCLQAPVHCCTL*SPVIFLRLKVL Trigger: AAGAACCTTGAGTCTGAGAAAGATCACAGGAGACCAGAGAGTGCAACAGTGCACAGGAGCCTGCAAACACCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | CAGGCAGTGGTACTGAGAGAGGCTTCCTCTAACGACTaGACAAAAGAAACCAAGAGGCTGTTGTCCACTGGG | + |
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Preference number: 6 (lower is better) Translates to: QAVVLREASSND*TKETKRLLSTG Trigger: CCCAGTGGACAACAGCCTCTTGGTTTCTTTTGTCAAGTCGTTAGAGGAAGCCTCTCTCAGTACCACTGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | TTTTCGGAGAGATGGACTTTTGGACCTGTTGAAATAGGAGGGTGTTaGCAGGCTCCTGTGCACTGTTGCACTCTCTGGTCTCCTGTGATC | + |
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Preference number: 6 (lower is better) Translates to: FSERWTFGPVEIGGC*QAPVHCCTLWSPVI Trigger: GATCACAGGAGACCAGAGAGTGCAACAGTGCACAGGAGCCTGCAAACACCCTCCTATTTCAACAGGTCCAAAAGTCCATCTCTCCGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | AGTACAATGCAGGCAGTGGTACTGAGAGAGGCTTCCTCTAACGACTaGACAAAAGAAACCAAGAGGCTGTTGTCCACTGGGGAAGACAGG | + |
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Preference number: 6 (lower is better) Translates to: STMQAVVLREASSND*TKETKRLLSTGEDR Trigger: CCTGTCTTCCCCAGTGGACAACAGCCTCTTGGTTTCTTTTGTCAAGTCGTTAGAGGAAGCCTCTCTCAGTACCACTGCCTGCATTGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 72 bp | TACCAGGTTTTCGGAGAGATGGACTTTTGGACCTGTTaGAATAGGAGGGTGTTTGCAGGCTCCTGTGCACTG | + |
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Preference number: 6 (lower is better) Translates to: YQVFGEMDFWTC*NRRVFAGSCAL Trigger: CAGTGCACAGGAGCCTGCAAACACCCTCCTATTTCAACAGGTCCAAAAGTCCATCTCTCCGAAAACCTGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 72 bp | CGCCAGGAGACGAATTTTGTCAGTGGAAGTCGGGAGTaGTCTTTTCCAGAAGCAAAGGAGTTCGTGGATCTG | + |
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Preference number: 6 (lower is better) Translates to: RQETNFVSGSRE*SFPEAKEFVDL Trigger: CAGATCCACGAACTCCTTTGCTTCTGGAAAAGATCACTCCCGACTTCCACTGACAAAATTCGTCTCCTGGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | AGATGGACTTTTGGACCTGTTGAAATAGGAGGGTGTTaGCAGGCTCCTGTGCACTGTTGCACTCTCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: RWTFGPVEIGGC*QAPVHCCTLWS Trigger: AGACCAGAGAGTGCAACAGTGCACAGGAGCCTGCAAACACCCTCCTATTTCAACAGGTCCAAAAGTCCATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | TCCCAAAGGGCCACTAGGGGGTCTGTAGAAACTCTCTaGGTGCTCTGTGGACGGTTAATCACTTTTTCATGC | + |
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Preference number: 6 (lower is better) Translates to: SQRATRGSVETL*VLCGRLITFSC Trigger: GCATGAAAAAGTGATTAACCGTCCACAGAGCACCAAGAGAGTTTCTACAGACCCCCTAGTGGCCCTTTGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | CAAGATTGCGGTTCTGTGAACACCTTGTGTTCCCATTaGAATTTGAGCTCTTCTGTGAGATCACCGCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: QDCGSVNTLCSH*NLSSSVRSPRP Trigger: GGGCCGCGGTGATCTCACAGAAGAGCTCAAATTCAAATGGGAACACAAGGTGTTCACAGAACCGCAATCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | AACCAAGATTGCGGTTCTGTGAACACCTTGTGTTCCCATTTGAATTaGAGCTCTTCTGTGAGATCACCGCGGCCCATTTTGCGGAGATGG | + |
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Preference number: 6 (lower is better) Translates to: NQDCGSVNTLCSHLN*SSSVRSPRPILRRW Trigger: CCATCTCCGCAAAATGGGCCGCGGTGATCTCACAGAAGAGCTCAAATTCAAATGGGAACACAAGGTGTTCACAGAACCGCAATCTTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 72 bp | TCCCTTCTTGGAGCAATGTCTGTTGCTTTGGTATCCTaGATGGCTGATATTGTCTGCTGTGGAGTACGGTCC | + |
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Preference number: 6 (lower is better) Translates to: SLLGAMSVALVS*MADIVCCGVRS Trigger: GGACCGTACTCCACAGCAGACAATATCAGCCATTCAGGATACCAAAGCAACAGACATTGCTCCAAGAAGGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | ACCACTAAAATAACCACCCGATGTGGGTTGTCCTTCTaGTGTGACAGTACAATGCAGGCAGTGGTACTGAGA | + |
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Preference number: 6 (lower is better) Translates to: TTKITTRCGLSF*CDSTMQAVVLR Trigger: TCTCAGTACCACTGCCTGCATTGTACTGTCACACCAGAAGGACAACCCACATCGGGTGGTTATTTTAGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | TGCGGTTCTGTGAACACCTTGTGTTCCCATTTGAATTaGAGCTCTTCTGTGAGATCACCGCGGCCCATTTTG | + |
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Preference number: 6 (lower is better) Translates to: CGSVNTLCSHLN*SSSVRSPRPIL Trigger: CAAAATGGGCCGCGGTGATCTCACAGAAGAGCTCAAATTCAAATGGGAACACAAGGTGTTCACAGAACCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | ACATCAAACCAAGATTGCGGTTCTGTGAACACCTTGTGTTCCCATTaGAATTTGAGCTCTTCTGTGAGATCACCGCGGCCCATTTTGCGG | + |
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Preference number: 6 (lower is better) Translates to: TSNQDCGSVNTLCSH*NLSSSVRSPRPILR Trigger: CCGCAAAATGGGCCGCGGTGATCTCACAGAAGAGCTCAAATTCAAATGGGAACACAAGGTGTTCACAGAACCGCAATCTTGGTTTGATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | CCCTGCAGTGTGTTCCAAAAGTTGATAAAGGGCTTCATTGAGTCTTaGACCCAAAAAGATCACTGTGGCTATCCAAGTGGCTCCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: PCSVFQKLIKGFIES*TQKDHCGYPSGSTS Trigger: GCTGGTGGAGCCACTTGGATAGCCACAGTGATCTTTTTGGGTCAAAGACTCAATGAAGCCCTTTATCAACTTTTGGAACACACTGCAGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS CAA 90 bp | CTTAACTCCTTAGAAGGTACCACTAAAATAACCACCCGATGTGGGTaGTCCTTCTGGTGTGACAGTACAATGCAGGCAGTGGTACTGAGA | + |
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Preference number: 6 (lower is better) Translates to: LNSLEGTTKITTRCG*SFWCDSTMQAVVLR Trigger: TCTCAGTACCACTGCCTGCATTGTACTGTCACACCAGAAGGACAACCCACATCGGGTGGTTATTTTAGTGGTACCTTCTAAGGAGTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | AGCAAGTTATCCCAAAGGGCCACTAGGGGGTCTGTAGAAACTCTCTaGGTGCTCTGTGGACGGTTAATCACTTTTTCATGCTTTGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: SKLSQRATRGSVETL*VLCGRLITFSCFGN Trigger: ATTGCCAAAGCATGAAAAAGTGATTAACCGTCCACAGAGCACCAAGAGAGTTTCTACAGACCCCCTAGTGGCCCTTTGGGATAACTTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 72 bp | TGGAGCAATGTCTGTTGCTTTGGTATCCTGAATGGCTaGTATTGTCTGCTGTGGAGTACGGTCCTCATGCAT | + |
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Preference number: 6 (lower is better) Translates to: WSNVCCFGILNG*YCLLWSTVLMH Trigger: ATGCATGAGGACCGTACTCCACAGCAGACAATATCAGCCATTCAGGATACCAAAGCAACAGACATTGCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | TTTCCAGAAGCAAAGGAGTTCGTGGATCTGCTCTGTTaGATCATCGGGATGCTTAAGTTTGATGAGCTGGAC | + |
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Preference number: 6 (lower is better) Translates to: FPEAKEFVDLLC*IIGMLKFDELD Trigger: GTCCAGCTCATCAAACTTAAGCATCCCGATGATCCAACAGAGCAGATCCACGAACTCCTTTGCTTCTGGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | GTGGCTCCACCAGCTCCCTTACAGAGATCATCACCTTaGAGTGCCTTTGTTAACATTTGGTTTTGTCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: VAPPAPLQRSSP*SAFVNIWFCLQ Trigger: TTGGAGACAAAACCAAATGTTAACAAAGGCACTCCAAGGTGATGATCTCTGTAAGGGAGCTGGTGGAGCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS CAA 72 bp | TTAGAAGGTACCACTAAAATAACCACCCGATGTGGGTaGTCCTTCTGGTGTGACAGTACAATGCAGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: LEGTTKITTRCG*SFWCDSTMQAV Trigger: CACTGCCTGCATTGTACTGTCACACCAGAAGGACAACCCACATCGGGTGGTTATTTTAGTGGTACCTTCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | AGAGAGGCTTCCTCTAACGACTTGACAAAAGAAACCAAGAGGCTGTaGTCCACTGGGGAAGACAGGTTGAGTACTATAAACCTCTCTAAG | + |
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Preference number: 6 (lower is better) Translates to: REASSNDLTKETKRL*STGEDRLSTINLSK Trigger: CTTAGAGAGGTTTATAGTACTCAACCTGTCTTCCCCAGTGGACAACAGCCTCTTGGTTTCTTTTGTCAAGTCGTTAGAGGAAGCCTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | TATTCAGTAGCCACATCAAACCAAGATTGCGGTTCTGTGAACACCTaGTGTTCCCATTTGAATTTGAGCTCTTCTGTGAGATCACCGCGG | + |
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Preference number: 6 (lower is better) Translates to: YSVATSNQDCGSVNT*CSHLNLSSSVRSPR Trigger: CCGCGGTGATCTCACAGAAGAGCTCAAATTCAAATGGGAACACAAGGTGTTCACAGAACCGCAATCTTGGTTTGATGTGGCTACTGAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 72 bp | GAGGGCAGCTATAATTCCCAAATTCATCCACCTCTTTaGTGTGGAGTTCTAGCCTGGGTTTTCTTTGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: EGSYNSQIHPPL*CGVLAWVFFAG Trigger: ACCTGCAAAGAAAACCCAGGCTAGAACTCCACATCAAAGAGGTGGATGAATTTGGGAATTATAGCTGCCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | TTCTTGGAGCAATGTCTGTTGCTTTGGTATCCTGAATaGCTGATATTGTCTGCTGTGGAGTACGGTCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: FLEQCLLLWYPE*LILSAVEYGPH Trigger: ATGAGGACCGTACTCCACAGCAGACAATATCAGCCATTCAGGATACCAAAGCAACAGACATTGCTCCAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | GGTAGACCGAAGGGACCCTGCAGTGTGTTCCAAAAGTaGATAAAGGGCTTCATTGAGTCTTTGACCCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: GRPKGPCSVFQK*IKGFIESLTQK Trigger: TTTTTGGGTCAAAGACTCAATGAAGCCCTTTATCAACTTTTGGAACACACTGCAGGGTCCCTTCGGTCTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS CCA 72 bp | TCACTCACTATAAAGGAGCTCATGTCATTAGTTATCTaGCAGTCAAACCACTGTAGGACGTGCAATGGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SLTIKELMSLVI*QSNHCRTCNGA Trigger: AGCACCATTGCACGTCCTACAGTGGTTTGACTGCCAGATAACTAATGACATGAGCTCCTTTATAGTGAGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | TGGCTCCACCAGCTCCCTTACAGAGATCATCACCTTGGAGTGCCTTaGTTAACATTTGGTTTTGTCTCCAAATCTGACTCAATATTTGAC | + |
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Preference number: 6 (lower is better) Translates to: WLHQLPYRDHHLGVP*LTFGFVSKSDSIFD Trigger: GTCAAATATTGAGTCAGATTTGGAGACAAAACCAAATGTTAACAAAGGCACTCCAAGGTGATGATCTCTGTAAGGGAGCTGGTGGAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS TCA 72 bp | CTGCAGTGTGTTCCAAAAGTTGATAAAGGGCTTCATTaGGTCTTTGACCCAAAAAGATCACTGTGGCTATCC | + |
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Preference number: 6 (lower is better) Translates to: LQCVPKVDKGLH*VFDPKRSLWLS Trigger: GGATAGCCACAGTGATCTTTTTGGGTCAAAGACTCAATGAAGCCCTTTATCAACTTTTGGAACACACTGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS CAA 72 bp | GAAACCAAGAGGCTGTTGTCCACTGGGGAAGACAGGTaGAGTACTATAAACCTCTCTAAGTGTTCACATAAT | + |
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Preference number: 6 (lower is better) Translates to: ETKRLLSTGEDR*STINLSKCSHN Trigger: ATTATGTGAACACTTAGAGAGGTTTATAGTACTCAACCTGTCTTCCCCAGTGGACAACAGCCTCTTGGTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 72 bp | CAGCTCCCTTACAGAGATCATCACCTTGGAGTGCCTTaGTTAACATTTGGTTTTGTCTCCAAATCTGACTCA | + |
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Preference number: 6 (lower is better) Translates to: QLPYRDHHLGVP*LTFGFVSKSDS Trigger: TGAGTCAGATTTGGAGACAAAACCAAATGTTAACAAAGGCACTCCAAGGTGATGATCTCTGTAAGGGAGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS CAA 72 bp | GTGTTCCAAAAGTTGATAAAGGGCTTCATTGAGTCTTaGACCCAAAAAGATCACTGTGGCTATCCAAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: VFQKLIKGFIES*TQKDHCGYPSG Trigger: GCCACTTGGATAGCCACAGTGATCTTTTTGGGTCAAAGACTCAATGAAGCCCTTTATCAACTTTTGGAACAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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| CDS CCA 72 bp | AAGTGTTCACATAATTCAAATGATACCAAGCCACTCTaGACAGTTCTCACCACAACATCATCAATCCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: KCSHNSNDTKPL*TVLTTTSSIPN Trigger: GTTTGGGATTGATGATGTTGTGGTGAGAACTGTCCAGAGTGGCTTGGTATCATTTGAATTATGTGAACACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | AATGGAATTTCCTTGTCCTTATCTGAGCATTCAACAGTGATGACATaGCTGACCAACTCTTCATTATCACTCACTATAAAGGAGCTCATG | + |
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Preference number: 6 (lower is better) Translates to: NGISLSLSEHSTVMT*LTNSSLSLTIKELM Trigger: CATGAGCTCCTTTATAGTGAGTGATAATGAAGAGTTGGTCAGCAATGTCATCACTGTTGAATGCTCAGATAAGGACAAGGAAATTCCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CAA 90 bp | TTGACAAAAGAAACCAAGAGGCTGTTGTCCACTGGGGAAGACAGGTaGAGTACTATAAACCTCTCTAAGTGTTCACATAATTCAAATGAT | + |
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Preference number: 6 (lower is better) Translates to: LTKETKRLLSTGEDR*STINLSKCSHNSND Trigger: ATCATTTGAATTATGTGAACACTTAGAGAGGTTTATAGTACTCAACCTGTCTTCCCCAGTGGACAACAGCCTCTTGGTTTCTTTTGTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS CCA 72 bp | ACTGATAAAAAGTTTCATGAAGTGTTTGATCCAAGTTaGGGACGATCTTCTCTCTGGGTACTTTGTAAACTG | + |
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Preference number: 6 (lower is better) Translates to: TDKKFHEVFDPS*GRSSLWVLCKL Trigger: CAGTTTACAAAGTACCCAGAGAGAAGATCGTCCCCAACTTGGATCAAACACTTCATGAAACTTTTTATCAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000170704.2 ENSMUST00000238474.2 |
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| CDS TCA 72 bp | TCTATGAAAGCGATAATTTCTTGTCTCCAGATACATTaGTTATCCTTGTCAAGTAGTATATACAGCTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: SMKAIISCLQIH*LSLSSSIYSCW Trigger: CCAACAGCTGTATATACTACTTGACAAGGATAATCAATGTATCTGGAGACAAGAAATTATCGCTTTCATAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238474.2 |
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