Pregenerated sensors for DTD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020956Ensembl transcript IDs: ENSMUST00000021339.8, ENSMUST00000085404.10
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGGCTGCTGCTGCTCATGTTTAGGGAAGATACTACACAGGGTCTaGTGTATGGCTCCTCCCCCGATGGGCAGCCTCTGTGACAGCATG | + |
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Preference number: 1 (lower is better) Translates to: QGCCCSCLGKILHRV*CMAPPPMGSLCDSM Trigger: CATGCTGTCACAGAGGCTGCCCATCGGGGGAGGAGCCATACATCAGACCCTGTGTAGTATCTTCCCTAAACATGAGCAGCAGCAGCCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 90 bp | GCGCGGGGTACAGACCTGGAGCTGGAGCACCAGGATGCTGTCAATTaGCTGATGTTGGTGCTGAGAGCTGAACGCCTCTCCTTTAAGAGT | + |
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Preference number: 1 (lower is better) Translates to: ARGTDLELEHQDAVN*LMLVLRAERLSFKS Trigger: ACTCTTAAAGGAGAGGCGTTCAGCTCTCAGCACCAACATCAGGCAATTGACAGCATCCTGGTGCTCCAGCTCCAGGTCTGTACCCCGCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR TCA 90 bp | GGCTGGGCTGAGAGACCTAACAGGGACCAGCAGAACAGGGAATTCTaGCATTTCTGGACCTTAGAGAGGAGGGGAGAGGTCTCTGACCTT | + |
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Preference number: 1 (lower is better) Translates to: GWAERPNRDQQNREF*HFWTLERRGEVSDL Trigger: AAGGTCAGAGACCTCTCCCCTCCTCTCTAAGGTCCAGAAATGTCAGAATTCCCTGTTCTGCTGGTCCCTGTTAGGTCTCTCAGCCCAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 90 bp | ACTTCTGGGTGGTGGAGAGATGGCTTGGTGGTTAAGAGCACACACTaGTTACTTAAGTGGGCCTCAGTTGGATTCCTGGCACCCACAGCA | + |
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Preference number: 1 (lower is better) Translates to: TSGWWRDGLVVKSTH*LLKWASVGFLAPTA Trigger: TGCTGTGGGTGCCAGGAATCCAACTGAGGCCCACTTAAGTAAGCAGTGTGTGCTCTTAACCACCAAGCCATCTCTCCACCACCCAGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CCA 90 bp | TGGAGAGATGGCTTGGTGGTTAAGAGCACACACTGCTTACTTAAGTaGGCCTCAGTTGGATTCCTGGCACCCACAGCAGACACAACCACC | + |
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Preference number: 1 (lower is better) Translates to: WRDGLVVKSTHCLLK*ASVGFLAPTADTTT Trigger: GGTGGTTGTGTCTGCTGTGGGTGCCAGGAATCCAACTGAGGCCCACTTAAGTAAGCAGTGTGTGCTCTTAACCACCAAGCCATCTCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR TCA 90 bp | ACCTTACATAGAGTATTTGCTACAAGTGGTTCCCAGTTTCGAAACTaGAAGATTAAAAGACACTTCTGGGTGGTGGAGAGATGGCTTGGT | + |
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Preference number: 1 (lower is better) Translates to: TLHRVFATSGSQFRN*KIKRHFWVVERWLG Trigger: ACCAAGCCATCTCTCCACCACCCAGAAGTGTCTTTTAATCTTTCAGTTTCGAAACTGGGAACCACTTGTAGCAAATACTCTATGTAAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGTTGGATTCCTGGCACCCACAGCAGACACAACCACCTGTAATGCCAGCTCCTCACTGAAATCTGCTTaGCTCTGCCCCCTGAGCACT | + |
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Preference number: 2 (lower is better) Translates to: SVGFLAPTADTTTCNASSSLKSA*LCPLST Trigger: AGTGCTCAGGGGGCAGAGGCAAGCAGATTTCAGTGA...GGAGCTGGCATTACAGGTGGTTGTGTCTGCTGTGGGTGCCAGGAATCCAACTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR GCA 90 bp | GAGCTGGAGCACCAGGATGCTGTCAATTGCCTGATGTTGGTGCTGAGAGCTGAACACCTCACTGAAATCTaGTTGCCTCTGCCCCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: ELEHQDAVNCLMLVLRAEHLTEI*LPLPPE Trigger: CTCAGGGGGCAGAGGCAAGCAGATTTCAGTGAGGTG...TTCAGCTCTCAGCACCAACATCAGGCAATTGACAGCATCCTGGTGCTCCAGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR GCA 90 bp | GTGTGCGCGGGGTACAGACCTGGAGCTGGAGCACCAGGATGCTGTCAATTGCCTGTTAAGAGCACACACTaGTTACTTAAGTGGGCCTCA | + |
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Preference number: 2 (lower is better) Translates to: VCAGYRPGAGAPGCCQLPVKSTH*LLKWAS Trigger: TGAGGCCCACTTAAGTAAGCAGTGTGTGCTCTTAAC...AGGCAATTGACAGCATCCTGGTGCTCCAGCTCCAGGTCTGTACCCCGCGCACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR CCA 90 bp | GGGAGCCAATCCTATTGTCCCACCCCCAACTCAGGGCTGCTGCTGCTCATGTTTGGTGGAGAGATGGCTTaGTGGTTAAGAGCACACACT | + |
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Preference number: 2 (lower is better) Translates to: GSQSYCPTPNSGLLLLMFGGEMA*WLRAHT Trigger: AGTGTGTGCTCTTAACCACCAAGCCATCTCTCCACC...AAACATGAGCAGCAGCAGCCCTGAGTTGGGGGTGGGACAATAGGATTGGCTCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAAGAGAATGAGGTCACCAACAGTGGACAGGGAATGCCGGGTAGCCAGCACTTGTAGTGAGCTTGGCTaGTGTGAGCTTGCTTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: EKRMRSPTVDRECRVASTCSELG*CELACQ Trigger: CTGGCAAGCAAGCTCACACCAGCCAAGCTCACTACA...AGTGCTGGCTACCCGGCATTCCCTGTCCACTGTTGGTGACCTCATTCTCTTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| 3UTR-3UTR GCA 90 bp | CATGCGCATATGCGTATGTGTGTGCGCGGGGTACAGACCTGGAGCTGGAGCACCCCGAATAGGATGACTTaGAGAAATGACTTGTCTTGC | + |
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Preference number: 2 (lower is better) Translates to: HAHMRMCVRGVQTWSWSTPNRMT*RNDLSC Trigger: GCAAGACAAGTCATTTCTGCAAGTCATCCTATTCGG...GGTGCTCCAGCTCCAGGTCTGTACCCCGCGCACACACATACGCATATGCGCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CAA 90 bp | CCACTCTCCTCAAGTGTCTCAGGCGATTTCTGTGAGGAGAATGGCTaGAGCCATATCTGGGCTGTGAGTCAGCATTTCACCCGAGCACAA | + |
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Preference number: 2 (lower is better) Translates to: PLSSSVSGDFCEENG*SHIWAVSQHFTRAQ Trigger: TTGTGCTCGGGTGAAATGCTGACTCACAGCCCAGATATGGCTCAAGCCATTCTCCTCACAGAAATCGCCTGAGACACTTGAGGAGAGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CAA 90 bp | ACAGACCTGGAGCTGGAGCACCAGGATGCTGTCAATTGCCTGATGTaGGTGCTGAGAGCTGAACGCCTCTCCTTTAAGAGTAACATTCTC | + |
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Preference number: 2 (lower is better) Translates to: TDLELEHQDAVNCLM*VLRAERLSFKSNIL Trigger: GAGAATGTTACTCTTAAAGGAGAGGCGTTCAGCTCTCAGCACCAACATCAGGCAATTGACAGCATCCTGGTGCTCCAGCTCCAGGTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGCGCGGGGTACAGACCTGGAGCTGGAGCACCAGGATGCTGTCAATTGCCTGCATATACATGTCCTTaGAGAGGCTTTAAGAAAAAC | + |
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Preference number: 2 (lower is better) Translates to: VCAGYRPGAGAPGCCQLPAYTCP*RGFKKN Trigger: GTTTTTCTTAAAGCCTCTCCAAGGACATGTATATGC...AGGCAATTGACAGCATCCTGGTGCTCCAGCTCCAGGTCTGTACCCCGCGCACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGTTGGATTCCTGGCACCCACAGCAGACACAACCACCTGTAATGCCAGCTCCAGCACAAAGTCAAAGTaGTGCAAAGGAAGTAATGTA | + |
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Preference number: 2 (lower is better) Translates to: SVGFLAPTADTTTCNASSSTKSK*CKGSNV Trigger: TACATTACTTCCTTTGCATCACTTTGACTTTGTGCT...GGAGCTGGCATTACAGGTGGTTGTGTCTGCTGTGGGTGCCAGGAATCCAACTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR GCA 90 bp | CCGAATAGGATGACTTGCAGAAATGACTTGTCTTGCTTCTTACAGTGCGGTCCTAAATCTGCTTGCCTCTaGCCCCTGAGCACTGGAATT | + |
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Preference number: 2 (lower is better) Translates to: PNRMTCRNDLSCFLQCGPKSACL*PLSTGI Trigger: AATTCCAGTGCTCAGGGGGCAGAGGCAAGCAGATTT...AGGACCGCACTGTAAGAAGCAAGACAAGTCATTTCTGCAAGTCATCCTATTCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR GCA 90 bp | AATAAAGCAATTATTGGCAAGGAGAGAAGCAGACCCTCTATCAAGGTTAATTTCCCCTCGCGCTTGCAGTaGCACTCTCCTCAAGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: NKAIIGKERSRPSIKVNFPSRLQ*HSPQVS Trigger: AGACACTTGAGGAGAGTGGCACTGCAAGCGCGAGGG...GAAATTAACCTTGATAGAGGGTCTGCTTCTCTCCTTGCCAATAATTGCTTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR TCA 90 bp | TCTAGAACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGGGAAGGAGAAGAGAATaGGGTCACCAACAGTGGACA | + |
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Preference number: 2 (lower is better) Translates to: SRTYFVDQIILQFIEIHLGRRRE*GHQQWT Trigger: TGTCCACTGTTGGTGACCTCATTCTCTTCTCCTTCC...CAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGTTCTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| 3UTR-3UTR GCA 90 bp | CCGAATAGGATGACTTGCAGAAATGACTTGTCTTGCTTCTTACAGTGCGGTCCTGGAATTAAAGGTATGTaGACTACTATGCCCAGCATA | + |
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Preference number: 2 (lower is better) Translates to: PNRMTCRNDLSCFLQCGPGIKGM*TTMPSI Trigger: TATGCTGGGCATAGTAGTGCACATACCTTTAATTCC...AGGACCGCACTGTAAGAAGCAAGACAAGTCATTTCTGCAAGTCATCCTATTCGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CAA 90 bp | GAAATGACTTGTCTTGCTTCTTACAGTGCGGTCCTCACTAGAGCGTaGAAGGTAAAGTATGTGTGTATGCTGGAAGCTAAACTGAAGTTA | + |
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Preference number: 2 (lower is better) Translates to: EMTCLASYSAVLTRA*KVKYVCMLEAKLKL Trigger: TAACTTCAGTTTAGCTTCCAGCATACACACATACTTTACCTTCAACGCTCTAGTGAGGACCGCACTGTAAGAAGCAAGACAAGTCATTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 72 bp | AGGCTGGTCCCCACCTCACTGAAATCTGCTTGCCTCTaGCCCCTGAGCACTGGAATTAAAGGTCCAGGTCGT | + |
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Preference number: 3 (lower is better) Translates to: RLVPTSLKSACL*PLSTGIKGPGR Trigger: ACGACCTGGACCTTTAATTCCAGTGCTCAGGGGGCAGAGGCAAGCAGATTTCAGTGAGGTGGGGACCAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 72 bp | ACAGACCTGGAGCTGGAGCACCAGGATGCTGTCAATTaGCTGATGTTGGTGCTGAGAGCTGAACGCCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: TDLELEHQDAVN*LMLVLRAERLS Trigger: GGAGAGGCGTTCAGCTCTCAGCACCAACATCAGGCAATTGACAGCATCCTGGTGCTCCAGCTCCAGGTCTGT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGCATGCGCATATGCGTATGTGTGTGCGCGGGGTACAGACCTGGAGCTGGAGGTCAATTGCCTGATGTaGGTGCTGAGAGCTGAACGC | + |
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Preference number: 3 (lower is better) Translates to: KACAYAYVCARGTDLELEVNCLM*VLRAER Trigger: GCGTTCAGCTCTCAGCACCAACATCAGGCAATTGAC...CTCCAGCTCCAGGTCTGTACCCCGCGCACACACATACGCATATGCGCATGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR CAA 90 bp | TTGCAGTGCCACTCTCCTCAAGTGTCTCAGGCGATTTCTGTGAGGAGAATGGCTCTCACTGAAATCTGCTaGCCTCTGCCCCCTGAGCAC | + |
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Preference number: 3 (lower is better) Translates to: LQCHSPQVSQAISVRRMALTEIC*PLPPEH Trigger: GTGCTCAGGGGGCAGAGGCAAGCAGATTTCAGTGAG...AGCCATTCTCCTCACAGAAATCGCCTGAGACACTTGAGGAGAGTGGCACTGCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR TCA 72 bp | TGCTGCTCATGTTTAGGGAAGATACTACACAGGGTCTaGTGTATGGCTCCTCCCCCGATGGGCAGCCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: CCSCLGKILHRV*CMAPPPMGSLC Trigger: ACAGAGGCTGCCCATCGGGGGAGGAGCCATACATCAGACCCTGTGTAGTATCTTCCCTAAACATGAGCAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 72 bp | GCCAATCCTATTGTCCCACCCCCAACTCAGGGCTGCTaGTGCTCATGTTTAGGGAAGATACTACACAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: ANPIVPPPTQGC*CSCLGKILHRV Trigger: GACCCTGTGTAGTATCTTCCCTAAACATGAGCAGCAGCAGCCCTGAGTTGGGGGTGGGACAATAGGATTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 72 bp | GGAGCCAATCCTATTGTCCCACCCCCAACTCAGGGCTaGTGCTGCTCATGTTTAGGGAAGATACTACACAGG | + |
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Preference number: 3 (lower is better) Translates to: GANPIVPPPTQG*CCSCLGKILHR Trigger: CCTGTGTAGTATCTTCCCTAAACATGAGCAGCAGCAGCCCTGAGTTGGGGGTGGGACAATAGGATTGGCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CCA 72 bp | GGCTTGGTGGTTAAGAGCACACACTGCTTACTTAAGTaGGCCTCAGTTGGATTCCTGGCACCCACAGCAGAC | + |
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Preference number: 3 (lower is better) Translates to: GLVVKSTHCLLK*ASVGFLAPTAD Trigger: GTCTGCTGTGGGTGCCAGGAATCCAACTGAGGCCCACTTAAGTAAGCAGTGTGTGCTCTTAACCACCAAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CCA 72 bp | ACCTTTAGTAAAGCTGCCATTCACAATGGGGGAGGCTaGGCTGAGAGACCTAACAGGGACCAGCAGAACAGG | + |
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Preference number: 3 (lower is better) Translates to: TFSKAAIHNGGG*AERPNRDQQNR Trigger: CCTGTTCTGCTGGTCCCTGTTAGGTCTCTCAGCCCAGCCTCCCCCATTGTGAATGGCAGCTTTACTAAAGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CCA 72 bp | CACACTGCTTACTTAAGTGGGCCTCAGTTGGATTCCTaGCACCCACAGCAGACACAACCACCTGTAATGCCA | + |
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Preference number: 3 (lower is better) Translates to: HTAYLSGPQLDS*HPQQTQPPVMP Trigger: TGGCATTACAGGTGGTTGTGTCTGCTGTGGGTGCCAGGAATCCAACTGAGGCCCACTTAAGTAAGCAGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 72 bp | TGGTGGAGAGATGGCTTGGTGGTTAAGAGCACACACTaGTTACTTAAGTGGGCCTCAGTTGGATTCCTGGCA | + |
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Preference number: 3 (lower is better) Translates to: WWRDGLVVKSTH*LLKWASVGFLA Trigger: TGCCAGGAATCCAACTGAGGCCCACTTAAGTAAGCAGTGTGTGCTCTTAACCACCAAGCCATCTCTCCACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR GCA 72 bp | AGGCTGTCCTCAAACTCACAGAGATCCTCCAGCCTCTaGCTCTCAAGTGCTGGAATTAAAGGTATGTGCACT | + |
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Preference number: 3 (lower is better) Translates to: RLSSNSQRSSSL*LSSAGIKGMCT Trigger: AGTGCACATACCTTTAATTCCAGCACTTGAGAGGCAGAGGCTGGAGGATCTCTGTGAGTTTGAGGACAGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR-3UTR CAA 90 bp | ACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGACTCTGGCACTTGTAGTGAGCTaGGCTGGTGTGAGCTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: TYFVDQIILQFIEIHLTLALVVS*AGVSLL Trigger: AAGCAAGCTCACACCAGCCAAGCTCACTACAAGTGC...CAGAGTCAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| 3UTR TCA 72 bp | AGAGTATTTGCTACAAGTGGTTCCCAGTTTCGAAACTaGAAGATTAAAAGACACTTCTGGGTGGTGGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: RVFATSGSQFRN*KIKRHFWVVER Trigger: TCTCTCCACCACCCAGAAGTGTCTTTTAATCTTTCAGTTTCGAAACTGGGAACCACTTGTAGCAAATACTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR CCA 90 bp | GGGAGCCAATCCTATTGTCCCACCCCCAACTCAGGGCTGCTGCTGCTCATGTTTCCGCTTCTACACTCTTaGTGTTGTTGGCCACGGCTT | + |
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Preference number: 4 (lower is better) Translates to: GSQSYCPTPNSGLLLLMFPLLHS*CCWPRL Trigger: AAGCCGTGGCCAACAACACCAAGAGTGTAGAAGCGG...AAACATGAGCAGCAGCAGCCCTGAGTTGGGGGTGGGACAATAGGATTGGCTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR GCA 90 bp | CATGTAGCTCTGCCTGTCCTAGAACTCACACTGTGGACCAGGCTGTCCTCAAACGAGTTAGAGTGGTACTaGATGCTCCGCCCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: HVALPVLELTLWTRLSSNELEWY*MLRPFT Trigger: GGTGAAAGGGCGGAGCATGCAGTACCACTCTAACTC...GTTTGAGGACAGCCTGGTCCACAGTGTGAGTTCTAGGACAGGCAGAGCTACATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR GCA 90 bp | AGAATGAGGTCACCAACAGTGGACAGGGAATGCCGGGTAGCCAGCACTTGTAGTGAGTTAGAGTGGTACTaGATGCTCCGCCCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: RMRSPTVDRECRVASTCSELEWY*MLRPFT Trigger: GGTGAAAGGGCGGAGCATGCAGTACCACTCTAACTC...ACTACAAGTGCTGGCTACCCGGCATTCCCTGTCCACTGTTGGTGACCTCATTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS-3UTR GCA 90 bp | GAGCTGGAGCACCAGGATGCTGTCAATTGCCTGATGTTGGTGCTGAGAGCTGAATCCAGCTTTAACACTTaGCTGTTCCCGTACGTGCCG | + |
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Preference number: 4 (lower is better) Translates to: ELEHQDAVNCLMLVLRAESSFNT*LFPYVP Trigger: CGGCACGTACGGGAACAGGCAAGTGTTAAAGCTGGA...TTCAGCTCTCAGCACCAACATCAGGCAATTGACAGCATCCTGGTGCTCCAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR GCA 90 bp | ATGAGGTCACCAACAGTGGACAGGGAATGCCGGGTAGCCAGCACTTGTAGTGAGGCTGTGAGCAATGTCTaGAACTCCTTCTGTGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: MRSPTVDRECRVASTCSEAVSNV*NSFCVW Trigger: CCACACACAGAAGGAGTTGCAGACATTGCTCACAGC...CTCACTACAAGTGCTGGCTACCCGGCATTCCCTGTCCACTGTTGGTGACCTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS-3UTR CCA 90 bp | GAGAAGAGAATGAGGTCACCAACAGTGGACAGGGAATGCCGGGTAGCCAGCACTTTTCCAGAGTTAGAGTaGTACTGCATGCTCCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: EKRMRSPTVDRECRVASTFPELE*YCMLRP Trigger: AGGGCGGAGCATGCAGTACCACTCTAACTCTGGAAA...AGTGCTGGCTACCCGGCATTCCCTGTCCACTGTTGGTGACCTCATTCTCTTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| 3UTR CAA 72 bp | GAGCTGGAGCACCAGGATGCTGTCAATTGCCTGATGTaGGTGCTGAGAGCTGAACGCCTCTCCTTTAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: ELEHQDAVNCLM*VLRAERLSFKS Trigger: ACTCTTAAAGGAGAGGCGTTCAGCTCTCAGCACCAACATCAGGCAATTGACAGCATCCTGGTGCTCCAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR CCA 90 bp | GAGCTGGAGCACCAGGATGCTGTCAATTGCCTGATGTTGGTGCTGAGAGCTGAATTTCCAGAGTTAGAGTaGTACTGCATGCTCCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: ELEHQDAVNCLMLVLRAEFPELE*YCMLRP Trigger: AGGGCGGAGCATGCAGTACCACTCTAACTCTGGAAA...TTCAGCTCTCAGCACCAACATCAGGCAATTGACAGCATCCTGGTGCTCCAGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CAA 72 bp | TTAAGAGCACACACTGCTTACTTAAGTGGGCCTCAGTaGGATTCCTGGCACCCACAGCAGACACAACCACCT | + |
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Preference number: 4 (lower is better) Translates to: LRAHTAYLSGPQ*DSWHPQQTQPP Trigger: AGGTGGTTGTGTCTGCTGTGGGTGCCAGGAATCCAACTGAGGCCCACTTAAGTAAGCAGTGTGTGCTCTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| 3UTR CAA 72 bp | TCAAGTGTCTCAGGCGATTTCTGTGAGGAGAATGGCTaGAGCCATATCTGGGCTGTGAGTCAGCATTTCACC | + |
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Preference number: 4 (lower is better) Translates to: SSVSGDFCEENG*SHIWAVSQHFT Trigger: GGTGAAATGCTGACTCACAGCCCAGATATGGCTCAAGCCATTCTCCTCACAGAAATCGCCTGAGACACTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR TCA 90 bp | ACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGACTCTGCTGGGAGTACAGTTCTaGGCCCTCCTCCTTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: TYFVDQIILQFIEIHLTLLGVQF*ALLLSR Trigger: TCTGGAAAGGAGGAGGGCTCAGAACTGTACTCCCAG...CAGAGTCAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS-3UTR CCA 90 bp | ACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGACTCTGAACTCCTTCTGTGTGTaGCTCCACCTGTTCCCGTAC | + |
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Preference number: 4 (lower is better) Translates to: TYFVDQIILQFIEIHLTLNSFCV*LHLFPY Trigger: GTACGGGAACAGGTGGAGCCACACACAGAAGGAGTT...CAGAGTCAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS-3UTR TCA 90 bp | AATAAAGCAATTATTGGCAAGGAGAGAAGCAGACCCTCTATCAAGGTTAATTTCCTGGGAGTACAGTTCTaGGCCCTCCTCCTTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: NKAIIGKERSRPSIKVNFLGVQF*ALLLSR Trigger: TCTGGAAAGGAGGAGGGCTCAGAACTGTACTCCCAG...GAAATTAACCTTGATAGAGGGTCTGCTTCTCTCCTTGCCAATAATTGCTTTATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR CCA 90 bp | AGAACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGACTCCGCTTCTACACTCTTaGTGTTGTTGGCCACGGCTT | + |
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Preference number: 4 (lower is better) Translates to: RTYFVDQIILQFIEIHLTPLLHS*CCWPRL Trigger: AAGCCGTGGCCAACAACACCAAGAGTGTAGAAGCGG...AGTCAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| 3UTR CAA 72 bp | TGTCTTGCTTCTTACAGTGCGGTCCTCACTAGAGCGTaGAAGGTAAAGTATGTGTGTATGCTGGAAGCTAAA | + |
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Preference number: 4 (lower is better) Translates to: CLASYSAVLTRA*KVKYVCMLEAK Trigger: TTTAGCTTCCAGCATACACACATACTTTACCTTCAACGCTCTAGTGAGGACCGCACTGTAAGAAGCAAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR CCA 90 bp | AGAGCGTTGAAGGTAAAGTATGTGTGTATGCTGGAAGCTAAACTGAAGTTAGTCGCGTGTAGGGTCCATTaGTGTCCAGCTTTAACACTT | + |
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Preference number: 4 (lower is better) Translates to: RALKVKYVCMLEAKLKLVACRVH*CPALTL Trigger: AAGTGTTAAAGCTGGACACCAATGGACCCTACACGC...GACTAACTTCAGTTTAGCTTCCAGCATACACACATACTTTACCTTCAACGCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR TCA 90 bp | AGAGCGTTGAAGGTAAAGTATGTGTGTATGCTGGAAGCTAAACTGAAGTTAGTCCTGTGTCAGCTCCCTTaGAGAAACACACATAGATCA | + |
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Preference number: 4 (lower is better) Translates to: RALKVKYVCMLEAKLKLVLCQLP*RNTHRS Trigger: TGATCTATGTGTGTTTCTTCAAGGGAGCTGACACAG...GACTAACTTCAGTTTAGCTTCCAGCATACACACATACTTTACCTTCAACGCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR TCA 90 bp | ACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGACTCTGCTGTGTCAGCTCCCTTaGAGAAACACACATAGATCA | + |
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Preference number: 4 (lower is better) Translates to: TYFVDQIILQFIEIHLTLLCQLP*RNTHRS Trigger: TGATCTATGTGTGTTTCTTCAAGGGAGCTGACACAG...CAGAGTCAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS GCA 90 bp | GAGTACAGTTCTGAGCCCTCCTCCTTTCCAGAGTTAGAGTGGTACTaGATGCTCCGCCCTTTCACCCTGCCCCCGAGGGTGGCTTGCGGG | + |
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Preference number: 5 (lower is better) Translates to: EYSSEPSSFPELEWY*MLRPFTLPPRVACG Trigger: CCCGCAAGCCACCCTCGGGGGCAGGGTGAAAGGGCGGAGCATGCAGTACCACTCTAACTCTGGAAAGGAGGAGGGCTCAGAACTGTACTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021339.8 ENSMUST00000085404.10 |
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| CDS-3UTR CAA 90 bp | TTGCAGTGCCACTCTCCTCAAGTGTCTCAGGCGATTTCTGTGAGGAGAATGGCTATCGGCCGGGCGCACTaGCAGGCGAGCGTGCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: LQCHSPQVSQAISVRRMAIGRAH*QASVQA Trigger: TGCCTGCACGCTCGCCTGCAAGTGCGCCCGGCCGAT...AGCCATTCTCCTCACAGAAATCGCCTGAGACACTTGAGGAGAGTGGCACTGCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS GCA 90 bp | CCATTGGTGTCCAGCTTTAACACTTGCCTGTTCCCGTACGTGCCGTaGGCCACCGCAACCCCCGCTTCTACACTCTTGGTGTTGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PLVSSFNTCLFPYVP*ATATPASTLLVLLA Trigger: GGCCAACAACACCAAGAGTGTAGAAGCGGGGGTTGCGGTGGCGCACGGCACGTACGGGAACAGGCAAGTGTTAAAGCTGGACACCAATGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS GCA 90 bp | AGGGTCCATTGGTGTCCAGCTTTAACACTTGCCTGTTCCCGTACGTaGCGTGCGCCACCGCAACCCCCGCTTCTACACTCTTGGTGTTGT | + |
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Preference number: 5 (lower is better) Translates to: RVHWCPALTLACSRT*RAPPQPPLLHSWCC Trigger: ACAACACCAAGAGTGTAGAAGCGGGGGTTGCGGTGGCGCACGGCACGTACGGGAACAGGCAAGTGTTAAAGCTGGACACCAATGGACCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS TCA 90 bp | GGCCACGGCTTTTTCACACAGACTCACAAACTGGGAGTACAGTTCTaGGCCCTCCTCCTTTCCAGAGTTAGAGTGGTACTGCATGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: GHGFFTQTHKLGVQF*ALLLSRVRVVLHAP Trigger: CGGAGCATGCAGTACCACTCTAACTCTGGAAAGGAGGAGGGCTCAGAACTGTACTCCCAGTTTGTGAGTCTGTGTGAAAAAGCCGTGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021339.8 ENSMUST00000085404.10 |
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| CDS-3UTR CAA 90 bp | ACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGACTCTGATCGGCCGGGCGCACTaGCAGGCGAGCGTGCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: TYFVDQIILQFIEIHLTLIGRAH*QASVQA Trigger: TGCCTGCACGCTCGCCTGCAAGTGCGCCCGGCCGAT...CAGAGTCAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS GCA 90 bp | TGCGGGATGATCAGAACATCGCCAGGCAGATCGAGGATGGAGACGTaGTTGCCGGTTTCCGTTTCGCTTAACTTCACATTTAACAGCGTA | + |
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Preference number: 5 (lower is better) Translates to: CGMIRTSPGRSRMET*LPVSVSLNFTFNSV Trigger: TACGCTGTTAAATGTGAAGTTAAGCGAAACGGAAACCGGCAAGCACGTCTCCATCCTCGATCTGCCTGGCGATGTTCTGATCATCCCGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021339.8 ENSMUST00000085404.10 |
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| CDS CCA 90 bp | CTCTTGGTGTTGTTGGCCACGGCTTTTTCACACAGACTCACAAACTaGGAGTACAGTTCTGAGCCCTCCTCCTTTCCAGAGTTAGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: LLVLLATAFSHRLTN*EYSSEPSSFPELEW Trigger: CCACTCTAACTCTGGAAAGGAGGAGGGCTCAGAACTGTACTCCCAGTTTGTGAGTCTGTGTGAAAAAGCCGTGGCCAACAACACCAAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021339.8 ENSMUST00000085404.10 |
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| CDS-3UTR CAA 90 bp | CATGTAGCTCTGCCTGTCCTAGAACTCACACTGTGGACCAGGCTGTCCTCAAACAGCGTATTAACCATTTaGGGGAGAAGGTCTGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: HVALPVLELTLWTRLSSNSVLTI*GRRSVS Trigger: TGACACAGACCTTCTCCCCAAAATGGTTAATACGCT...GTTTGAGGACAGCCTGGTCCACAGTGTGAGTTCTAGGACAGGCAGAGCTACATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR CAA 90 bp | CCGAATAGGATGACTTGCAGAAATGACTTGTCTTGCTTCTTACAGTGCGGTCCTTCTACACTCTTGGTGTaGTTGGCCACGGCTTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: PNRMTCRNDLSCFLQCGPSTLLV*LATAFS Trigger: TGAAAAAGCCGTGGCCAACAACACCAAGAGTGTAGA...AGGACCGCACTGTAAGAAGCAAGACAAGTCATTTCTGCAAGTCATCCTATTCGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS-3UTR CAA 90 bp | ACTTACTTTGTAGACCAGATTATCCTCCAGTTCATAGAGATTCACCTGACTCTGAGCGTATTAACCATTTaGGGGAGAAGGTCTGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: TYFVDQIILQFIEIHLTLSVLTI*GRRSVS Trigger: TGACACAGACCTTCTCCCCAAAATGGTTAATACGCT...CAGAGTCAGGTGAATCTCTATGAACTGGAGGATAATCTGGTCTACAAAGTAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS GCA 72 bp | TTCTGTGTGTGGCTCCACCTGTTCCCGTACGTGCCGTaGGCCACCGCAACCCCCGCTTCTACACTCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: FCVWLHLFPYVP*ATATPASTLLV Trigger: CACCAAGAGTGTAGAAGCGGGGGTTGCGGTGGCGCACGGCACGTACGGGAACAGGTGGAGCCACACACAGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085404.10 |
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| CDS GCA 72 bp | TCCAGCTTTAACACTTGCCTGTTCCCGTACGTGCCGTaGGCCACCGCAACCCCCGCTTCTACACTCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: SSFNTCLFPYVP*ATATPASTLLV Trigger: CACCAAGAGTGTAGAAGCGGGGGTTGCGGTGGCGCACGGCACGTACGGGAACAGGCAAGTGTTAAAGCTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS GCA 72 bp | TGGTGTCCAGCTTTAACACTTGCCTGTTCCCGTACGTaGCGTGCGCCACCGCAACCCCCGCTTCTACACTCT | + |
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Preference number: 6 (lower is better) Translates to: WCPALTLACSRT*RAPPQPPLLHS Trigger: AGAGTGTAGAAGCGGGGGTTGCGGTGGCGCACGGCACGTACGGGAACAGGCAAGTGTTAAAGCTGGACACCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021339.8 |
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| CDS CCA 72 bp | TGCCGTGCGCCACCGCAACCCCCGCTTCTACACTCTTaGTGTTGTTGGCCACGGCTTTTTCACACAGACTCA | + |
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Preference number: 6 (lower is better) Translates to: CRAPPQPPLLHS*CCWPRLFHTDS Trigger: TGAGTCTGTGTGAAAAAGCCGTGGCCAACAACACCAAGAGTGTAGAAGCGGGGGTTGCGGTGGCGCACGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021339.8 ENSMUST00000085404.10 |
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| CDS GCA 72 bp | GAACATCGCCAGGCAGATCGAGGATGGAGACGTGCTTaGCGGTTTCCGTTTCGCTTAACTTCACATTTAACA | + |
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Preference number: 6 (lower is better) Translates to: EHRQADRGWRRA*RFPFRLTSHLT Trigger: TGTTAAATGTGAAGTTAAGCGAAACGGAAACCGGCAAGCACGTCTCCATCCTCGATCTGCCTGGCGATGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021339.8 ENSMUST00000085404.10 |
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