RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for DTD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027430

Ensembl transcript IDs: ENSMUST00000028917.7

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGCATGTGCTGGAGATGGATCACAGACTCACAGTACACCACAGATaGGGACAGATGATGCTAGGCCAGCCTGTTCCAAAAGCAAGCCAA +
Preference number: 1 (lower is better)
Translates to: RHVLEMDHRLTVHHR*GQMMLGQPVPKASQ
Trigger: TTGGCTTGCTTTTGGAACAGGCTGGCCTAGCATCATCTGTCCTCATCTGTGGTGTACTGTGAGTCTGTGATCCATCTCCAGCACATGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR-3UTR TCA 90 bp GGTTGCCTAACACCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCGGGAGGGCATGGGTGTaGACCCACAAGCACTCTCCC +
Preference number: 2 (lower is better)
Translates to: GCLTPALSCDSMMEMVDSGRAWV*THKHSP
Trigger: GGGAGAGTGCTTGTGGGTTCACACCCATGCCCTCCC...GCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAGGCAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR-3UTR CCA 90 bp GGTTGCCTAACACCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCATGGCCCCCTCTCCATaGGGAGGGCATGGGTGTGAA +
Preference number: 2 (lower is better)
Translates to: GCLTPALSCDSMMEMVDSMAPSP*GGHGCE
Trigger: TTCACACCCATGCCCTCCCCATGGAGAGGGGGCCAT...GCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAGGCAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR-3UTR CCA 90 bp CCCTCTCCATGGGGAGGGCATGGGTGTGAACCCACAAGCACTCTCCCATCCCACAATAAAATGGTCCTTTaGTGTTTTTCTGCAGGGATA +
Preference number: 2 (lower is better)
Translates to: PSPWGGHGCEPTSTLPSHNKMVL*CFSAGI
Trigger: TATCCCTGCAGAAAAACACCAAAGGACCATTTTATT...GTGGGATGGGAGAGTGCTTGTGGGTTCACACCCATGCCCTCCCCATGGAGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR-3UTR TCA 90 bp CACAGTACACCACAGATGAGGACAGATGATGCTAGGCCAGCCTGTTCCAAAAGCGGGGCTTTAGCATCTTaGTTTTTCAGGATCCGATTC +
Preference number: 2 (lower is better)
Translates to: HSTPQMRTDDARPACSKSGALAS*FFRIRF
Trigger: GAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCC...GCTTTTGGAACAGGCTGGCCTAGCATCATCTGTCCTCATCTGTGGTGTACTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR-3UTR GCA 90 bp CTAACACCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCAGGCATCCTTTGGTGTTTTTCTaGAGGGATATTCAGGTTCCC +
Preference number: 2 (lower is better)
Translates to: LTPALSCDSMMEMVDSRHPLVFF*RDIQVP
Trigger: GGGAACCTGAATATCCCTGCAGAAAAACACCAAAGG...ATGCCTGCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR CAA 90 bp TATTTGAGTCCCGAATTCTTAAAGCAGTGTAGGGGCTTTAGCATCTaGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGCTGAGC +
Preference number: 2 (lower is better)
Translates to: YLSPEFLKQCRGFSI*IFQDPILPNGNLLS
Trigger: GCTCAGCAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCTACACTGCTTTAAGAATTCGGGACTCAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR TCA 72 bp CTGGAGATGGATCACAGACTCACAGTACACCACAGATaGGGACAGATGATGCTAGGCCAGCCTGTTCCAAAA +
Preference number: 3 (lower is better)
Translates to: LEMDHRLTVHHR*GQMMLGQPVPK
Trigger: TTTTGGAACAGGCTGGCCTAGCATCATCTGTCCTCATCTGTGGTGTACTGTGAGTCTGTGATCCATCTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR TCA 72 bp TGTTATTATTGGTTGCCTAACACCAGCCCTGTCTTGTaGCTCAATGATGGAAATGGTGGACAGCAGGCATGT +
Preference number: 3 (lower is better)
Translates to: CYYWLPNTSPVL*LNDGNGGQQAC
Trigger: ACATGCCTGCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAGGCAACCAATAATAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR GCA 72 bp AAGATGCAAAGTCTCATACAATATGTTATTATTGGTTaGCTAACACCAGCCCTGTCTTGTGACTCAATGATG +
Preference number: 3 (lower is better)
Translates to: KMQSLIQYVIIG*LTPALSCDSMM
Trigger: CATCATTGAGTCACAAGACAGGGCTGGTGTTAGGCAACCAATAATAACATATTGTATGAGACTTTGCATCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR GCA 90 bp CCCTCTCCATGGGGAGGGCATGGGTGTGAACCCACAAGCACTCTCCCATCCCACCCCCGCTGCTGGCGCTaGGGTCTTCTTTGCGGGGTG +
Preference number: 4 (lower is better)
Translates to: PSPWGGHGCEPTSTLPSHPRCWR*GLLCGV
Trigger: CACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGG...GTGGGATGGGAGAGTGCTTGTGGGTTCACACCCATGCCCTCCCCATGGAGAGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp CCCTCTCCATGGGGAGGGCATGGGTGTGAACCCACAAGCACTCTCCCATCCCACAGATGCCCCGTCCGATaGCGCTTATCTGCTCTCCTC +
Preference number: 4 (lower is better)
Translates to: PSPWGGHGCEPTSTLPSHRCPVR*RLSALL
Trigger: GAGGAGAGCAGATAAGCGCCATCGGACGGGGCATCT...GTGGGATGGGAGAGTGCTTGTGGGTTCACACCCATGCCCTCCCCATGGAGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp CCCTCTCCATGGGGAGGGCATGGGTGTGAACCCACAAGCACTCTCCCATCCCACTCTCTGCCTGCTCTGTaGGCATGGCCAGGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: PSPWGGHGCEPTSTLPSHSLPAL*AWPGGS
Trigger: ACTTCCACCTGGCCATGCCCACAGAGCAGGCAGAGA...GTGGGATGGGAGAGTGCTTGTGGGTTCACACCCATGCCCTCCCCATGGAGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp CCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCAGGCATGTGCTGCCTCTGCCCCGCTGCTaGCGCTGCGGTCTTCTTTGC +
Preference number: 4 (lower is better)
Translates to: PALSCDSMMEMVDSRHVLPLPRC*RCGLLC
Trigger: GCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGG...CAGCACATGCCTGCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR GCA 90 bp GGTTGCCTAACACCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCCACCCTCTGCCCCGCTaGTGGCGCTGCGGTCTTCTT +
Preference number: 4 (lower is better)
Translates to: GCLTPALSCDSMMEMVDSHPLPR*WRCGLL
Trigger: AAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTG...GCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAGGCAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR GCA 90 bp CCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCAGGCATGTGCTGGTTGTAGAAGCTCTCTaGCTGCTCTGTGGGCATGGC +
Preference number: 4 (lower is better)
Translates to: PALSCDSMMEMVDSRHVLVVEAL*LLCGHG
Trigger: GCCATGCCCACAGAGCAGGCAGAGAGCTTCTACAAC...CAGCACATGCCTGCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp CACAGTACACCACAGATGAGGACAGATGATGCTAGGCCAGCCTGTTCCAAAAGCCACTGGAGGGTGAACTaGCTGACACACAGCACCTCG +
Preference number: 4 (lower is better)
Translates to: HSTPQMRTDDARPACSKSHWRVN*LTHSTS
Trigger: CGAGGTGCTGTGTGTCAGCCAGTTCACCCTCCAGTG...GCTTTTGGAACAGGCTGGCCTAGCATCATCTGTCCTCATCTGTGGTGTACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp GCCTGTTCCAAAAGCAAGCCAAGACATGGTAGAAAGCAAGAAAACCAATGGCCCCCTGCTCTGTGGGCATaGCCAGGTGGAAGTCGGGCT +
Preference number: 4 (lower is better)
Translates to: ACSKSKPRHGRKQENQWPPALWA*PGGSRA
Trigger: AGCCCGACTTCCACCTGGCCATGCCCACAGAGCAGG...GGGCCATTGGTTTTCTTGCTTTCTACCATGTCTTGGCTTGCTTTTGGAACAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR GCA 90 bp AGGGGCTTTAGCATCTTGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGAGACACGTCACCCTCTaGCCCGCTGCTGGCGCTGCG +
Preference number: 4 (lower is better)
Translates to: RGFSILIFQDPILPNGNLRHVTL*PAAGAA
Trigger: CGCAGCGCCAGCAGCGGGGCAGAGGGTGACGTGTCT...CAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp CTAACACCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCAGGCATCCCTTGAGGACGCACTaGAGGGTGAACTGGCTGACA +
Preference number: 4 (lower is better)
Translates to: LTPALSCDSMMEMVDSRHPLRTH*RVNWLT
Trigger: TGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGG...ATGCCTGCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR GCA 90 bp GCCTGTTCCAAAAGCAAGCCAAGACATGGTAGAAAGCAAGAAAACCAATGGCCCCTGGTCTGTAGCTCTTaGGAAGCTGCTCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: ACSKSKPRHGRKQENQWPLVCSS*EAAPGS
Trigger: GCTTCCTGGAGCAGCTTCGCAAGAGCTACAGACCAG...GGGCCATTGGTTTTCTTGCTTTCTACCATGTCTTGGCTTGCTTTTGGAACAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp CTAACACCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCAGGCATTATCCATCACGCTCTTaGACCAGTGCTTCCCACTCT +
Preference number: 4 (lower is better)
Translates to: LTPALSCDSMMEMVDSRHYPSRS*TSASHS
Trigger: AGAGTGGGAAGCACTGGTCCAAGAGCGTGATGGATA...ATGCCTGCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp CACAGTACACCACAGATGAGGACAGATGATGCTAGGCCAGCCTGTTCCAAAAGCTCTGTGAGTCTTCCATaGAAATACCCAGCAAGACAC +
Preference number: 4 (lower is better)
Translates to: HSTPQMRTDDARPACSKSSVSLP*KYPARH
Trigger: GTGTCTTGCTGGGTATTTCCATGGAAGACTCACAGA...GCTTTTGGAACAGGCTGGCCTAGCATCATCTGTCCTCATCTGTGGTGTACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR GCA 90 bp AGGGGCTTTAGCATCTTGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGCCGATGGCGCTTATCTaGTCTCCTCCAACTGTGACG +
Preference number: 4 (lower is better)
Translates to: RGFSILIFQDPILPNGNLPMALI*SPPTVT
Trigger: CGTCACAGTTGGAGGAGAGCAGATAAGCGCCATCGG...CAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR GCA 90 bp AGGGGCTTTAGCATCTTGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGACGCTCTTGGACCAGTaGTTCCCACTCTCGTCCTCA +
Preference number: 4 (lower is better)
Translates to: RGFSILIFQDPILPNGNLTLLDQ*FPLSSS
Trigger: TGAGGACGAGAGTGGGAAGCACTGGTCCAAGAGCGT...CAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp AGGGGCTTTAGCATCTTGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGAAGGGCCTTTGGCTCTaGTCTTTTCTTTTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: RGFSILIFQDPILPNGNLKGLWL*SFLFSA
Trigger: AGCAGAGAAAAGAAAAGACCAGAGCCAAAGGCCCTT...CAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
3UTR CAA 72 bp CCCGAATTCTTAAAGCAGTGTAGGGGCTTTAGCATCTaGATTTTTCAGGATCCGATTCTGCCCAATGGTAAT +
Preference number: 4 (lower is better)
Translates to: PEFLKQCRGFSI*IFQDPILPNGN
Trigger: ATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCTACACTGCTTTAAGAATTCGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CCA 90 bp TTTAGCATCTTGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGCTGAGCATCTCTGATAAGCTCTaGTCTGTAGCTCTTGCGAAG +
Preference number: 4 (lower is better)
Translates to: FSILIFQDPILPNGNLLSISDKL*SVALAK
Trigger: CTTCGCAAGAGCTACAGACCAGAGCTTATCAGAGAT...GCTCAGCAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 90 bp GCTCCCGCTCAGAAGACACGTCACCCTCTGCCCCGCTGCTGGCGCTaGGGTCTTCTTTGCGGGGTGCATTCCGTTCTTTGCTTGACTCAG +
Preference number: 5 (lower is better)
Translates to: APAQKTRHPLPRCWR*GLLCGVHSVLCLTQ
Trigger: CTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTGACGTGTCTTCTGAGCGGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 90 bp AAGACACGTCACCCTCTGCCCCGCTGCTGGCGCTGCGGTCTTCTTTaGGGGGTGCATTCCGTTCTTTGCTTGACTCAGAAGGGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: KTRHPLPRCWRCGLL*GVHSVLCLTQKGLW
Trigger: CCAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTGACGTGTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 90 bp GGCATGGCCAGGTGGAAGTCGGGCTTGTTCCCCTTGAGGACGCACTaGAGGGTGAACTGGCTGACACACAGCACCTCGTACTCCTTATCC +
Preference number: 5 (lower is better)
Translates to: GMARWKSGLFPLRTH*RVNWLTHSTSYSLS
Trigger: GGATAAGGAGTACGAGGTGCTGTGTGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGACTTCCACCTGGCCATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CAA 90 bp CCCTCTCCATGGGGAGGGCATGGGTGTGAACCCACAAGCACTCTCCCATCCCACGCTGTTTCTCCAGCTTaGACAGCTGCTTTGGGTCAG +
Preference number: 5 (lower is better)
Translates to: PSPWGGHGCEPTSTLPSHAVSPA*TAALGQ
Trigger: CTGACCCAAAGCAGCTGTCAAAGCTGGAGAAACAGC...GTGGGATGGGAGAGTGCTTGTGGGTTCACACCCATGCCCTCCCCATGGAGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 90 bp TGGAAGTCGGGCTTGTTCCCCTTGAGGACGCACTGGAGGGTGAACTaGCTGACACACAGCACCTCGTACTCCTTATCCATCACGCTCTTG +
Preference number: 5 (lower is better)
Translates to: WKSGLFPLRTHWRVN*LTHSTSYSLSITLL
Trigger: CAAGAGCGTGATGGATAAGGAGTACGAGGTGCTGTGTGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGACTTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CAA 90 bp GCCTGTTCCAAAAGCAAGCCAAGACATGGTAGAAAGCAAGAAAACCAATGGCCCTCGGGCTTGTTCCCCTaGAGGACGCACTGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: ACSKSKPRHGRKQENQWPSGLFP*RTHWRV
Trigger: CACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGA...GGGCCATTGGTTTTCTTGCTTTCTACCATGTCTTGGCTTGCTTTTGGAACAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CAA 90 bp GGTTGCCTAACACCAGCCCTGTCTTGTGACTCAATGATGGAAATGGTGGACAGCGACTCAGAAGGGCCTTaGGCTCTGGTCTTTTCTTTT +
Preference number: 5 (lower is better)
Translates to: GCLTPALSCDSMMEMVDSDSEGP*ALVFSF
Trigger: AAAAGAAAAGACCAGAGCCAAAGGCCCTTCTGAGTC...GCTGTCCACCATTTCCATCATTGAGTCACAAGACAGGGCTGGTGTTAGGCAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 90 bp AAATCTTTCGAACCATGTGTTCCAGTTCCTTCTGTGAGTCTTCCATaGAAATACCCAGCAAGACACAGATGCCCCGTCCGATGGCGCTTA +
Preference number: 5 (lower is better)
Translates to: KSFEPCVPVPSVSLP*KYPARHRCPVRWRL
Trigger: TAAGCGCCATCGGACGGGGCATCTGTGTCTTGCTGGGTATTTCCATGGAAGACTCACAGAAGGAACTGGAACACATGGTTCGAAAGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 90 bp ACACACAGCACCTCGTACTCCTTATCCATCACGCTCTTGGACCAGTaGTTCCCACTCTCGTCCTCAAACACACGCAGATTTAAAATCTTT +
Preference number: 5 (lower is better)
Translates to: THSTSYSLSITLLDQ*FPLSSSNTRRFKIF
Trigger: AAAGATTTTAAATCTGCGTGTGTTTGAGGACGAGAGTGGGAAGCACTGGTCCAAGAGCGTGATGGATAAGGAGTACGAGGTGCTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CAA 90 bp AGGGGCTTTAGCATCTTGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGGGTGCATTCCGTTCTTaGCTTGACTCAGAAGGGCCT +
Preference number: 5 (lower is better)
Translates to: RGFSILIFQDPILPNGNLGAFRS*LDSEGP
Trigger: AGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACC...CAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS-3UTR CAA 90 bp AGGGGCTTTAGCATCTTGATTTTTCAGGATCCGATTCTGCCCAATGGTAATTTGCATTCCGTTCTTTGCTaGACTCAGAAGGGCCTTTGG +
Preference number: 5 (lower is better)
Translates to: RGFSILIFQDPILPNGNLHSVLC*TQKGLW
Trigger: CCAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATG...CAAATTACCATTGGGCAGAATCGGATCCTGAAAAATCAAGATGCTAAAGCCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 72 bp GCTCCCGCTCAGAAGACACGTCACCCTCTGCCCCGCTaGTGGCGCTGCGGTCTTCTTTGCGGGGTGCATTCC +
Preference number: 6 (lower is better)
Translates to: APAQKTRHPLPR*WRCGLLCGVHS
Trigger: GGAATGCACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTGACGTGTCTTCTGAGCGGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 72 bp CCCGCTCAGAAGACACGTCACCCTCTGCCCCGCTGCTaGCGCTGCGGTCTTCTTTGCGGGGTGCATTCCGTT +
Preference number: 6 (lower is better)
Translates to: PAQKTRHPLPRC*RCGLLCGVHSV
Trigger: AACGGAATGCACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTGACGTGTCTTCTGAGCGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 72 bp GCCTGCTCTGTGGGCATGGCCAGGTGGAAGTCGGGCTaGTTCCCCTTGAGGACGCACTGGAGGGTGAACTGG +
Preference number: 6 (lower is better)
Translates to: ACSVGMARWKSG*FPLRTHWRVNW
Trigger: CCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGACTTCCACCTGGCCATGCCCACAGAGCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 90 bp GCCTGCTCTGTGGGCATGGCCAGGTGGAAGTCGGGCTTGTTCCCCTaGAGGACGCACTGGAGGGTGAACTGGCTGACACACAGCACCTCG +
Preference number: 6 (lower is better)
Translates to: ACSVGMARWKSGLFP*RTHWRVNWLTHSTS
Trigger: CGAGGTGCTGTGTGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGACTTCCACCTGGCCATGCCCACAGAGCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 72 bp GTGGGCATGGCCAGGTGGAAGTCGGGCTTGTTCCCCTaGAGGACGCACTGGAGGGTGAACTGGCTGACACAC +
Preference number: 6 (lower is better)
Translates to: VGMARWKSGLFP*RTHWRVNWLTH
Trigger: GTGTGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGACTTCCACCTGGCCATGCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 90 bp AAGCTCTCTGCCTGCTCTGTGGGCATGGCCAGGTGGAAGTCGGGCTaGTTCCCCTTGAGGACGCACTGGAGGGTGAACTGGCTGACACAC +
Preference number: 6 (lower is better)
Translates to: KLSACSVGMARWKSG*FPLRTHWRVNWLTH
Trigger: GTGTGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGACTTCCACCTGGCCATGCCCACAGAGCAGGCAGAGAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 72 bp CACCCTCTGCCCCGCTGCTGGCGCTGCGGTCTTCTTTaGGGGGTGCATTCCGTTCTTTGCTTGACTCAGAAG +
Preference number: 6 (lower is better)
Translates to: HPLPRCWRCGLL*GVHSVLCLTQK
Trigger: CTTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 90 bp GAAGACACGTCACCCTCTGCCCCGCTGCTGGCGCTGCGGTCTTCTTaGCGGGGTGCATTCCGTTCTTTGCTTGACTCAGAAGGGCCTTTG +
Preference number: 6 (lower is better)
Translates to: EDTSPSAPLLALRSS*RGAFRSLLDSEGPL
Trigger: CAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTGACGTGTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 72 bp AGGTGGAAGTCGGGCTTGTTCCCCTTGAGGACGCACTaGAGGGTGAACTGGCTGACACACAGCACCTCGTAC +
Preference number: 6 (lower is better)
Translates to: RWKSGLFPLRTH*RVNWLTHSTSY
Trigger: GTACGAGGTGCTGTGTGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCCCGACTTCCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 72 bp CCAGGAAGCTGTTGTAGAAGCTCTCTGCCTGCTCTGTaGGCATGGCCAGGTGGAAGTCGGGCTTGTTCCCCT +
Preference number: 6 (lower is better)
Translates to: PGSCCRSSLPAL*AWPGGSRACSP
Trigger: AGGGGAACAAGCCCGACTTCCACCTGGCCATGCCCACAGAGCAGGCAGAGAGCTTCTACAACAGCTTCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 72 bp TCACCCTCTGCCCCGCTGCTGGCGCTGCGGTCTTCTTaGCGGGGTGCATTCCGTTCTTTGCTTGACTCAGAA +
Preference number: 6 (lower is better)
Translates to: SPSAPLLALRSS*RGAFRSLLDSE
Trigger: TTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCAGCGCCAGCAGCGGGGCAGAGGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 72 bp GGCTTGTTCCCCTTGAGGACGCACTGGAGGGTGAACTaGCTGACACACAGCACCTCGTACTCCTTATCCATC +
Preference number: 6 (lower is better)
Translates to: GLFPLRTHWRVN*LTHSTSYSLSI
Trigger: GATGGATAAGGAGTACGAGGTGCTGTGTGTCAGCCAGTTCACCCTCCAGTGCGTCCTCAAGGGGAACAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 72 bp GCGCTGCGGTCTTCTTTGCGGGGTGCATTCCGTTCTTaGCTTGACTCAGAAGGGCCTTTGGCTCTGGTCTTT +
Preference number: 6 (lower is better)
Translates to: ALRSSLRGAFRS*LDSEGPLALVF
Trigger: AAAGACCAGAGCCAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCAGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 72 bp GTGAGTCTTCCATGGAAATACCCAGCAAGACACAGATaGCCCGTCCGATGGCGCTTATCTGCTCTCCTCCAA +
Preference number: 6 (lower is better)
Translates to: VSLPWKYPARHR*PVRWRLSALLQ
Trigger: TTGGAGGAGAGCAGATAAGCGCCATCGGACGGGGCATCTGTGTCTTGCTGGGTATTTCCATGGAAGACTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 72 bp CGCTGCGGTCTTCTTTGCGGGGTGCATTCCGTTCTTTaGTTGACTCAGAAGGGCCTTTGGCTCTGGTCTTTT +
Preference number: 6 (lower is better)
Translates to: RCGLLCGVHSVL*LTQKGLWLWSF
Trigger: AAAAGACCAGAGCCAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS TCA 72 bp GCGGTCTTCTTTGCGGGGTGCATTCCGTTCTTTGCTTaGCTCAGAAGGGCCTTTGGCTCTGGTCTTTTCTTT +
Preference number: 6 (lower is better)
Translates to: AVFFAGCIPFFA*LRRAFGSGLFF
Trigger: AAAGAAAAGACCAGAGCCAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS GCA 72 bp ACCTCGTACTCCTTATCCATCACGCTCTTGGACCAGTaGTTCCCACTCTCGTCCTCAAACACACGCAGATTT +
Preference number: 6 (lower is better)
Translates to: TSYSLSITLLDQ*FPLSSSNTRRF
Trigger: AAATCTGCGTGTGTTTGAGGACGAGAGTGGGAAGCACTGGTCCAAGAGCGTGATGGATAAGGAGTACGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CCA 72 bp GAACCATGTGTTCCAGTTCCTTCTGTGAGTCTTCCATaGAAATACCCAGCAAGACACAGATGCCCCGTCCGA +
Preference number: 6 (lower is better)
Translates to: EPCVPVPSVSLP*KYPARHRCPVR
Trigger: TCGGACGGGGCATCTGTGTCTTGCTGGGTATTTCCATGGAAGACTCACAGAAGGAACTGGAACACATGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 72 bp TGCGGTCTTCTTTGCGGGGTGCATTCCGTTCTTTGCTaGACTCAGAAGGGCCTTTGGCTCTGGTCTTTTCTT +
Preference number: 6 (lower is better)
Translates to: CGLLCGVHSVLC*TQKGLWLWSFL
Trigger: AAGAAAAGACCAGAGCCAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACCCCGCAAAGAAGACCGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7
CDS CAA 72 bp GGTGCATTCCGTTCTTTGCTTGACTCAGAAGGGCCTTaGGCTCTGGTCTTTTCTTTTCTCTGCTGCTGTTTC +
Preference number: 6 (lower is better)
Translates to: GAFRSLLDSEGP*ALVFSFLCCCF
Trigger: GAAACAGCAGCAGAGAAAAGAAAAGACCAGAGCCAAAGGCCCTTCTGAGTCAAGCAAAGAACGGAATGCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028917.7