Pregenerated sensors for DSTN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015932Ensembl transcript IDs: ENSMUST00000103172.4
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATGTCCCAGCCCAGAGCCTCCTGCTGCAGATACAGGGCACTTCCTaGATGCCAGCCCCATGCTCTGGTGCTCTGCAAGGTCAGCGTGAA | + |
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Preference number: 1 (lower is better) Translates to: HVPAQSLLLQIQGTS*MPAPCSGALQGQRE Trigger: TTCACGCTGACCTTGCAGAGCACCAGAGCATGGGGCTGGCATGCAGGAAGTGCCCTGTATCTGCAGCAGGAGGCTCTGGGCTGGGACATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR TCA 90 bp | ATGCTTCCTTTATTACACAAAGCCAGCGTTGCTACTAAGTTCAACTaGCTGTGCATCTCTACAGTGTTCGGTGCCATGCCTGTGATGTTA | + |
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Preference number: 1 (lower is better) Translates to: MLPLLHKASVATKFN*LCISTVFGAMPVML Trigger: TAACATCACAGGCATGGCACCGAACACTGTAGAGATGCACAGTCAGTTGAACTTAGTAGCAACGCTGGCTTTGTGTAATAAAGGAAGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR-3UTR TCA 90 bp | GCCATGTCCCAGCCCAGAGCCTCCTGCTGCAGATACAGGGCACTTCCTGCATGCTTACAAGTCACCTCATaGAAACAGGCATTTGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: AMSQPRASCCRYRALPACLQVTS*KQAFGQ Trigger: TTGGCCAAATGCCTGTTTTCATGAGGTGACTTGTAA...GCATGCAGGAAGTGCCCTGTATCTGCAGCAGGAGGCTCTGGGCTGGGACATGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR-3UTR GCA 90 bp | CATTTCCAAGTGTTGTTGGGCAGTCCCGTGTCATCCATGGTACCTGCTTCAATTCCCAGAGCCTCCTGCTaGAGATACAGGGCACTTCCT | + |
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Preference number: 2 (lower is better) Translates to: HFQVLLGSPVSSMVPASIPRASC*RYRALP Trigger: AGGAAGTGCCCTGTATCTGCAGCAGGAGGCTCTGGG...AATTGAAGCAGGTACCATGGATGACACGGGACTGCCCAACAACACTTGGAAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR-3UTR GCA 90 bp | CTTTATTACACAAAGCCAGCGTTGCTACTAAGTTCAACTGACTGTGCATCTCTAATACAGGGCACTTCCTaGATGCCAGCCCCATGCTCT | + |
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Preference number: 2 (lower is better) Translates to: LYYTKPALLLSSTDCASLIQGTS*MPAPCS Trigger: AGAGCATGGGGCTGGCATGCAGGAAGTGCCCTGTAT...TAGAGATGCACAGTCAGTTGAACTTAGTAGCAACGCTGGCTTTGTGTAATAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR-3UTR GCA 90 bp | ATCCTACCAGGCCCCAGAGGAAACATAATCAACACCTTCCACAGTCTACTGTACAATATAATTAGTTGTTaGGAGACACGGAACATTCTC | + |
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Preference number: 2 (lower is better) Translates to: ILPGPRGNIINTFHSLLYNIISC*ETRNIL Trigger: GAGAATGTTCCGTGTCTCGCAACAACTAATTATATT...GTACAGTAGACTGTGGAAGGTGTTGATTATGTTTCCTCTGGGGCCTGGTAGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR-3UTR TCA 90 bp | CTTCCACAGTCTACTGTACCAGATGCAGCAGTTTTAGAGAAGAAATTACAGATCAGACAAATTCCTCAGTaGGATCCTGGCCTAATATAT | + |
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Preference number: 2 (lower is better) Translates to: LPQSTVPDAAVLEKKLQIRQIPQ*DPGLIY Trigger: ATATATTAGGCCAGGATCTCACTGAGGAATTTGTCT...GATCTGTAATTTCTTCTCTAAAACTGCTGCATCTGGTACAGTAGACTGTGGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR GCA 72 bp | GCCCAGAGCCTCCTGCTGCAGATACAGGGCACTTCCTaGATGCCAGCCCCATGCTCTGGTGCTCTGCAAGGT | + |
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Preference number: 3 (lower is better) Translates to: AQSLLLQIQGTS*MPAPCSGALQG Trigger: ACCTTGCAGAGCACCAGAGCATGGGGCTGGCATGCAGGAAGTGCCCTGTATCTGCAGCAGGAGGCTCTGGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR GCA 72 bp | AGAGCCTCCTGCTGCAGATACAGGGCACTTCCTGCATaGCAGCCCCATGCTCTGGTGCTCTGCAAGGTCAGC | + |
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Preference number: 3 (lower is better) Translates to: RASCCRYRALPA*QPHALVLCKVS Trigger: GCTGACCTTGCAGAGCACCAGAGCATGGGGCTGGCATGCAGGAAGTGCCCTGTATCTGCAGCAGGAGGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR TCA 72 bp | GCCAGCCCCATGCTCTGGTGCTCTGCAAGGTCAGCGTaGATTTTAAGCAGACATGAGTCTGAAACAGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: ASPMLWCSARSA*ILSRHESETVS Trigger: TGAGACTGTTTCAGACTCATGTCTGCTTAAAATTCACGCTGACCTTGCAGAGCACCAGAGCATGGGGCTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR TCA 72 bp | TTATTACACAAAGCCAGCGTTGCTACTAAGTTCAACTaGCTGTGCATCTCTACAGTGTTCGGTGCCATGCCT | + |
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Preference number: 3 (lower is better) Translates to: LLHKASVATKFN*LCISTVFGAMP Trigger: AGGCATGGCACCGAACACTGTAGAGATGCACAGTCAGTTGAACTTAGTAGCAACGCTGGCTTTGTGTAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| 3UTR CCA 72 bp | ATGCCTGTGATGTTAACAATCATTTCCAAGTGTTGTTaGGCAGTCCCGTGTCATCCATGGTACCTGCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: MPVMLTIISKCC*AVPCHPWYLLQ Trigger: TTGAAGCAGGTACCATGGATGACACGGGACTGCCCAACAACACTTGGAAATGATTGTTAACATCACAGGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR TCA 90 bp | CACTCTAAGCCATGTCCCAGCCCAGAGCCTCCTGCTGCAGATACAGGGCACTTCCTGGAAATTTCTTCTTaGTGGCATCCTTCGAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: HSKPCPSPEPPAADTGHFLEISS*WHPSSL Trigger: CAAGCTCGAAGGATGCCATCAAGAAGAAATTTCCAG...GAAGTGCCCTGTATCTGCAGCAGGAGGCTCTGGGCTGGGACATGGCTTAGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR GCA 90 bp | CACTCTAAGCCATGTCCCAGCCCAGAGCCTCCTGCTGCAGATACAGGGCACTTCAGCATTCCGACAAAATaGTTGAAAGGATCAGTTATG | + |
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Preference number: 4 (lower is better) Translates to: HSKPCPSPEPPAADTGHFSIPTK*LKGSVM Trigger: CATAACTGATCCTTTCAAGCATTTTGTCGGAATGCT...GAAGTGCCCTGTATCTGCAGCAGGAGGCTCTGGGCTGGGACATGGCTTAGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR GCA 90 bp | CATTTCCAAGTGTTGTTGGGCAGTCCCGTGTCATCCATGGTACCTGCTTCAATTAGGTGCTTGTTCTGGTaGCCACAGGAAGAACATCAG | + |
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Preference number: 4 (lower is better) Translates to: HFQVLLGSPVSSMVPASIRCLFW*PQEEHQ Trigger: CTGATGTTCTTCCTGTGGGCACCAGAACAAGCACCT...AATTGAAGCAGGTACCATGGATGACACGGGACTGCCCAACAACACTTGGAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR TCA 90 bp | CTTTATTACACAAAGCCAGCGTTGCTACTAAGTTCAACTGACTGTGCATCTCTACAATACAGGTCCGATTaGGGTCTTCTGGCCCATTTG | + |
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Preference number: 4 (lower is better) Translates to: LYYTKPALLLSSTDCASLQYRSD*GLLAHL Trigger: CAAATGGGCCAGAAGACCTCAATCGGACCTGTATTG...TAGAGATGCACAGTCAGTTGAACTTAGTAGCAACGCTGGCTTTGTGTAATAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR GCA 90 bp | CATTTCCAAGTGTTGTTGGGCAGTCCCGTGTCATCCATGGTACCTGCTTCAATTGTCTTCTGGCCCATTTaGTTGATACTCATGCTTTAT | + |
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Preference number: 4 (lower is better) Translates to: HFQVLLGSPVSSMVPASIVFWPI*LILMLY Trigger: ATAAAGCATGAGTATCAAGCAAATGGGCCAGAAGAC...AATTGAAGCAGGTACCATGGATGACACGGGACTGCCCAACAACACTTGGAAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CCA 90 bp | GAGGTTAGCAAAGATGAGTTCTCGTCATACTGCCTTGTACTGTTTTGTGAACTGCCGATTGAGGTCTTCTaGCCCATTTGCTTGATACTC | + |
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Preference number: 4 (lower is better) Translates to: EVSKDEFSSYCLVLFCELPIEVF*PICLIL Trigger: GAGTATCAAGCAAATGGGCCAGAAGACCTCAATCGG...CAGTTCACAAAACAGTACAAGGCAGTATGACGAGAACTCATCTTTGCTAACCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CCA 90 bp | AGGCTGGATTTAGGTAGGGTAGTGTTTGCAGACACTATACAATTTTTAGTTTACCTTTCCTGGACTCCTTaGTCTCAAAGCTGGCGTCAT | + |
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Preference number: 4 (lower is better) Translates to: RLDLGRVVFADTIQFLVYLSWTP*SQSWRH Trigger: ATGACGCCAGCTTTGAGACCAAGGAGTCCAGGAAAG...GTAAACTAAAAATTGTATAGTGTCTGCAAACACTACCCTACCTAAATCCAGCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CCA 90 bp | AGGCTGGATTTAGGTAGGGTAGTGTTTGCAGACACTATACAATTTTTAGTTTACTCAGCTCTTCTTTCCTaGACTCCTTGGTCTCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: RLDLGRVVFADTIQFLVYSALLS*TPWSQS Trigger: GCTTTGAGACCAAGGAGTCCAGGAAAGAAGAGCTGA...GTAAACTAAAAATTGTATAGTGTCTGCAAACACTACCCTACCTAAATCCAGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CCA 90 bp | AAATTACAGATCAAAAGCACCTTGGCTTATCAGTACACTGCTTTGTCATTTTTCCAGAGGTGCTTGTTCTaGTGCCCACAGGAAGAACAT | + |
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Preference number: 4 (lower is better) Translates to: KLQIKSTLAYQYTALSFFQRCLF*CPQEEH Trigger: ATGTTCTTCCTGTGGGCACCAGAACAAGCACCTCTG...GAAAAATGACAAAGCAGTGTACTGATAAGCCAAGGTGCTTTTGATCTGTAATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CCA 90 bp | GAGGTTAGCAAAGATGAGTTCTCGTCATACTGCCTTGTACTGTTTTGTGAACTGCTCATGCTTTATACCTaGAAATTTCTTCTTGATGGC | + |
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Preference number: 4 (lower is better) Translates to: EVSKDEFSSYCLVLFCELLMLYT*KFLLDG Trigger: GCCATCAAGAAGAAATTTCCAGGTATAAAGCATGAG...CAGTTCACAAAACAGTACAAGGCAGTATGACGAGAACTCATCTTTGCTAACCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CAA 90 bp | CACTCTAAGCCATGTCCCAGCCCAGAGCCTCCTGCTGCAGATACAGGGCACTTCGCAATACAGGTCCGATaGAGGTCTTCTGGCCCATTT | + |
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Preference number: 5 (lower is better) Translates to: HSKPCPSPEPPAADTGHFAIQVR*RSSGPF Trigger: AAATGGGCCAGAAGACCTCAATCGGACCTGTATTGC...GAAGTGCCCTGTATCTGCAGCAGGAGGCTCTGGGCTGGGACATGGCTTAGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CAA 90 bp | GGCCCCAGAGGAAACATAATCAACACCTTCCACAGTCTACTGTACCAGATGCAGCCTGGAAATTTCTTCTaGATGGCATCCTTCGAGCTT | + |
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Preference number: 5 (lower is better) Translates to: GPRGNIINTFHSLLYQMQPGNFF*MASFEL Trigger: AAGCTCGAAGGATGCCATCAAGAAGAAATTTCCAGG...CTGCATCTGGTACAGTAGACTGTGGAAGGTGTTGATTATGTTTCCTCTGGGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CAA 90 bp | GGCCCCAGAGGAAACATAATCAACACCTTCCACAGTCTACTGTACCAGATGCAGATTCCGACAAAATGCTaGAAAGGATCAGTTATGGTG | + |
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Preference number: 5 (lower is better) Translates to: GPRGNIINTFHSLLYQMQIPTKC*KGSVMV Trigger: CACCATAACTGATCCTTTCAAGCATTTTGTCGGAAT...CTGCATCTGGTACAGTAGACTGTGGAAGGTGTTGATTATGTTTCCTCTGGGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CAA 90 bp | AGGCTGGATTTAGGTAGGGTAGTGTTTGCAGACACTATACAATTTTTAGTTTACTCTTTCCTGGACTCCTaGGTCTCAAAGCTGGCGTCA | + |
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Preference number: 5 (lower is better) Translates to: RLDLGRVVFADTIQFLVYSFLDS*VSKLAS Trigger: TGACGCCAGCTTTGAGACCAAGGAGTCCAGGAAAGA...GTAAACTAAAAATTGTATAGTGTCTGCAAACACTACCCTACCTAAATCCAGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS-3UTR CAA 90 bp | AGGCTGGATTTAGGTAGGGTAGTGTTTGCAGACACTATACAATTTTTAGTTTACTTCTGGCCCATTTGCTaGATACTCATGCTTTATACC | + |
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Preference number: 5 (lower is better) Translates to: RLDLGRVVFADTIQFLVYFWPIC*ILMLYT Trigger: GGTATAAAGCATGAGTATCAAGCAAATGGGCCAGAA...GTAAACTAAAAATTGTATAGTGTCTGCAAACACTACCCTACCTAAATCCAGCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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| CDS GCA 72 bp | AGCAATACAGGTCCGATTGAGGTCTTCTGGCCCATTTaGTTGATACTCATGCTTTATACCTGGAAATTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SNTGPIEVFWPI*LILMLYTWKFL Trigger: AAGAAATTTCCAGGTATAAAGCATGAGTATCAAGCAAATGGGCCAGAAGACCTCAATCGGACCTGTATTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103172.4 |
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