Pregenerated sensors for DSN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027635Ensembl transcript IDs: ENSMUST00000103129.9, ENSMUST00000103130.8, ENSMUST00000124671.2, ENSMUST00000146413.8, ENSMUST00000154213.2
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCGGACACTTCAGAAAATaGGCATGCTGTAAAGTGTCC | + |
|
Preference number: 2 (lower is better) Translates to: PSTHKALGSILREAGVIPGHFRK*ACCKVS Trigger: GGACACTTTACAGCATGCCCATTTTCTGAAGTGTCC...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR-3UTR GCA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCTTCAGAAAATGGGCATaGTGTAAAGTGTCCACACAT | + |
|
Preference number: 2 (lower is better) Translates to: PSTHKALGSILREAGVIPFRKWA*CKVSTH Trigger: ATGTGTGGACACTTTACAGCATGCCCATTTTCTGAA...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR-3UTR TCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACAAAGGTGCAGCTTCTTaGGGGTGCTTCCCTAGCACC | + |
|
Preference number: 2 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNKGAAS*GCFPST Trigger: GGTGCTAGGGAAGCACCCTCAAGAAGCTGCACCTTT...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR-3UTR CCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACAGCGTCAGTCTTTTATaGCAACAACCCACCTTGGCC | + |
|
Preference number: 2 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNSVSLL*QQPTLA Trigger: GGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCT...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR-3UTR CCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACCTTAACACACTCTTCTaGATACATACATGCTGTCAC | + |
|
Preference number: 2 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNLNTLF*IHTCCH Trigger: GTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAG...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR CAA 90 bp | GCAAAACTTGTAAGTTTATTTCTAATCCAGACTTTATGTATCTGCTaGAGTTCTCCATGTGGTATTCCATATGAGATAGTAGCTTTCCCA | + |
|
Preference number: 2 (lower is better) Translates to: AKLVSLFLIQTLCIC*SSPCGIPYEIVAFP Trigger: TGGGAAAGCTACTATCTCATATGGAATACCACATGGAGAACTCAAGCAGATACATAAAGTCTGGATTAGAAATAAACTTACAAGTTTTGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR GCA 72 bp | TGGATACATACATGCTGTCACTCGGCAACAGTGAAGTaGTGTAGAGCTGGGACATTCCAGCTGACTGCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: WIHTCCHSATVK*CRAGTFQLTAV Trigger: CACAGCAGTCAGCTGGAATGTCCCAGCTCTACAGCACTTCACTGTTGCCGAGTGACAGCATGTATGTATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR CCA 72 bp | CACATCCCGACAAAAAGTGTCCTTAACACACTCTTCTaGATACATACATGCTGTCACTCGGCAACAGTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: HIPTKSVLNTLF*IHTCCHSATVK Trigger: CTTCACTGTTGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGTCGGGATGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR CCA 72 bp | AGTCCCACACTCACAAACTTTAGCGTCAGTCTTTTATaGCAACAACCCACCTTGGCCTCTAAAACATTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: SPTLTNFSVSLL*QQPTLASKTFP Trigger: AGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAAAGTTTGTGAGTGTGGGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR GCA 72 bp | ACTCTACAGAGATTAGGACACTTCAGAAAATGGGCATaGTGTAAAGTGTCCACACATACCCGTTATGTGACA | + |
|
Preference number: 3 (lower is better) Translates to: TLQRLGHFRKWA*CKVSTHTRYVT Trigger: TGTCACATAACGGGTATGTGTGGACACTTTACAGCATGCCCATTTTCTGAAGTGTCCTAATCTCTGTAGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| 3UTR TCA 72 bp | ATGTATCTGCTTGAGTTCTCCATGTGGTATTCCATATaGGATAGTAGCTTTCCCACCTCATTAACTACAGTA | + |
|
Preference number: 3 (lower is better) Translates to: MYLLEFSMWYSI*DSSFPTSLTTV Trigger: TACTGTAGTTAATGAGGTGGGAAAGCTACTATCTCATATGGAATACCACATGGAGAACTCAAGCAGATACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCCAGAGAACTGGAAGCTaGAGAGCAGGAGGGCGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: PSTHKALGSILREAGVIPQRTGS*RAGGRP Trigger: TGGGCGCCCTCCTGCTCTCCAGCTTCCAGTTCTCTG...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCACCTTCTGGAGGTACTaGGTACTCTCATCCATGAGG | + |
|
Preference number: 4 (lower is better) Translates to: PSTHKALGSILREAGVIPTFWRY*VLSSMR Trigger: CCTCATGGATGAGAGTACTCAGTACCTCCAGAAGGT...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCCTTCTTGAGCTGTACTaGCACCTTCTGGAGGTACTG | + |
|
Preference number: 4 (lower is better) Translates to: PSTHKALGSILREAGVIPLLELY*HLLEVL Trigger: CAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAG...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCTTTTCAACAGAGAACTaGAAGCTGGAGAGCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: PSTHKALGSILREAGVIPFSTEN*KLESRR Trigger: CCTCCTGCTCTCCAGCTTCCAGTTCTCTGTTGAAAA...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCTGCTTCACTGATCCTTaGAGCTCATCCATCACTAAC | + |
|
Preference number: 4 (lower is better) Translates to: PSTHKALGSILREAGVIPCFTDP*SSSITN Trigger: GTTAGTGATGGATGAGCTCCAAGGATCAGTGAAGCA...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCACAGAGAACTGGAAGCTaGAGAGCAGGAGGGCGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAQRTGS*RAGGRP Trigger: TGGGCGCCCTCCTGCTCTCCAGCTTCCAGTTCTCTG...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCAGTGGAAGGTGAGCTCTaGAGGGGGAGCTTGAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAVEGEL*RGSLSS Trigger: ACTGCTCAAGCTCCCCCTCCAGAGCTCACCTTCCAC...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACGTGGAAGGTGAGCTCTaGAGGGGGAGCTTGAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNVEGEL*RGSLSS Trigger: ACTGCTCAAGCTCCCCCTCCAGAGCTCACCTTCCAC...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCAATGAGGGCTTGCAGCTaGTTCACTGATCCTTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAMRACS*FTDPWS Trigger: GCTCCAAGGATCAGTGAAGCAGCTGCAAGCCCTCAT...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTATGAGGGCTTGCAGCTaGTTCACTGATCCTTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LASVFYGNNPPWPLKHFLMRACS*FTDPWS Trigger: GCTCCAAGGATCAGTGAAGCAGCTGCAAGCCCTCAT...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACGGTGGAACCTCGTTCTaGTACTGCAGTAAGAGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNGGTSF*YCSKSR Trigger: TCGGCTCTTACTGCAGTACCAGAACGAGGTTCCACC...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACATGCTTCCAAAGGCTTaGGACTTGGCTGCAATGGAC | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNMLPKA*DLAAMD Trigger: GTCCATTGCAGCCAAGTCTCAAGCCTTTGGAAGCAT...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTATGCTTCCAAAGGCTTaGGACTTGGCTGCAATGGAC | + |
|
Preference number: 4 (lower is better) Translates to: LASVFYGNNPPWPLKHFLMLPKA*DLAAMD Trigger: GTCCATTGCAGCCAAGTCTCAAGCCTTTGGAAGCAT...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTGACTGCCTTCTGTCTTaGGGACGGATAGACTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LASVFYGNNPPWPLKHFLDCLLS*GRIDCS Trigger: AGAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTC...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACGACTGCCTTCTGTCTTaGGGACGGATAGACTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNDCLLS*GRIDCS Trigger: AGAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTC...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTTTGCAGCTGCTTCACTaGTCCTTGGAGCTCATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LASVFYGNNPPWPLKHFLLQLLH*SLELIH Trigger: ATGGATGAGCTCCAAGGATCAGTGAAGCAGCTGCAA...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACTTGCAGCTGCTTCACTaGTCCTTGGAGCTCATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNLQLLH*SLELIH Trigger: ATGGATGAGCTCCAAGGATCAGTGAAGCAGCTGCAA...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACACCTTCTGGAGGTACTaGGTACTCTCATCCATGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNTFWRY*VLSSMR Trigger: CCTCATGGATGAGAGTACTCAGTACCTCCAGAAGGT...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTCTTCTTGAGCTGTACTaGCACCTTCTGGAGGTACTG | + |
|
Preference number: 4 (lower is better) Translates to: LASVFYGNNPPWPLKHFLLLELY*HLLEVL Trigger: CAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAG...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACTCATCCATGAGGGCTTaGAGCTGCTTCACTGATCCT | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNSSMRA*SCFTDP Trigger: AGGATCAGTGAAGCAGCTGCAAGCCCTCATGGATGA...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR TCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACGATTCTGGTTTCAGTTaGTCCTCTGGGCATCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNDSGFS*SSGHLF Trigger: GAAGAGATGCCCAGAGGATCAACTGAAACCAGAATC...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACTACTTCTTTCATGCTTaGTCGTCTCCAGGACTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNYFFHA*SSPGLP Trigger: AGGCAGTCCTGGAGACGAGCAAGCATGAAAGAAGTA...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCATACTTCTTTCATGCTTaGTCGTCTCCAGGACTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAYFFHA*SSPGLP Trigger: AGGCAGTCCTGGAGACGAGCAAGCATGAAAGAAGTA...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCATTTTCAACAGAGAACTaGAAGCTGGAGAGCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAFSTEN*KLESRR Trigger: CCTCCTGCTCTCCAGCTTCCAGTTCTCTGTTGAAAA...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACGGTTTACTTCTTTCATaGTTGCTCGTCTCCAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNGLLLS*LLVSRT Trigger: AGTCCTGGAGACGAGCAAGCATGAAAGAAGTAAACC...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCAGGTTTACTTCTTTCATaGTTGCTCGTCTCCAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAGLLLS*LLVSRT Trigger: AGTCCTGGAGACGAGCAAGCATGAAAGAAGTAAACC...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCATTTCAGTTGATCCTCTaGGCATCTCTTCAGGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAFQLIL*ASLQVE Trigger: TTCCACCTGAAGAGATGCCCAGAGGATCAACTGAAA...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTTTTCAGTTGATCCTCTaGGCATCTCTTCAGGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LASVFYGNNPPWPLKHFLFQLIL*ASLQVE Trigger: TTCCACCTGAAGAGATGCCCAGAGGATCAACTGAAA...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACTGCTTCACTGATCCTTaGAGCTCATCCATCACTAAC | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNCFTDP*SSSITN Trigger: GTTAGTGATGGATGAGCTCCAAGGATCAGTGAAGCA...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACTATTCTCTGGTAGTCTaGCTTCGTGCTAAGAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNYSLVV*LRAKNF Trigger: GAAGTTCTTAGCACGAAGCCAGACTACCAGAGAATA...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCATATTCTCTGGTAGTCTaGCTTCGTGCTAAGAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAYSLVV*LRAKNF Trigger: GAAGTTCTTAGCACGAAGCCAGACTACCAGAGAATA...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCAGGTGAAGAGTCTAATTaGTCCATACTTCTCTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSAGEESN*SILLFL Trigger: CAAGAAGAGAAGTATGGACCAATTAGACTCTTCACC...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTTTCAGAGAGAGAAGATaGTTTCGCTCTAAAACATTC | + |
|
Preference number: 4 (lower is better) Translates to: LASVFYGNNPPWPLKHFLFRERR*FRSKTF Trigger: GAATGTTTTAGAGCGAAAGCATCTTCTCTCTCTGAA...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR GCA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCATCAACAAAACATTTTTaGAGTGTTCCATCATTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: TKSVLNTLFWIHTCCHSASTKHF*SVPSFP Trigger: GGGAAATGATGGAACACTGCAAAAATGTTTTGTTGA...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCTTACTTCTTTCATGCTaGCTCGTCTCCAGGACTGCC | + |
|
Preference number: 5 (lower is better) Translates to: PSTHKALGSILREAGVIPLLLSC*LVSRTA Trigger: GGCAGTCCTGGAGACGAGCAAGCATGAAAGAAGTAA...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCGCTGCAGGATCCACCTaGACTTCAGTGATTCTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: PSTHKALGSILREAGVIPAAGST*TSVILV Trigger: AACCAGAATCACTGAAGTCAAGGTGGATCCTGCAGC...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CCA 90 bp | GCTAACTTCACACTGATGGACCTGCAGAGCTCTGTGATGCCTGGGTaGAAGGGAGCCAATGACTTCCGCCGGTTTACTTCTTTCATGCTT | + |
|
Preference number: 5 (lower is better) Translates to: ANFTLMDLQSSVMPG*KGANDFRRFTSFML Trigger: AAGCATGAAAGAAGTAAACCGGCGGAAGTCATTGGCTCCCTTCCACCCAGGCATCACAGAGCTCTGCAGGTCCATCAGTGTGAAGTTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000146413.8 |
||
| CDS-3UTR CAA 90 bp | CCTAGCACCCACAAAGCTCTGGGGTCAATTCTTAGGGAGGCAGGGGTAATTCCCAATGCTTCCAAAGGCTaGAGACTTGGCTGCAATGGA | + |
|
Preference number: 5 (lower is better) Translates to: PSTHKALGSILREAGVIPNASKG*RLGCNG Trigger: TCCATTGCAGCCAAGTCTCAAGCCTTTGGAAGCATT...GGGAATTACCCCTGCCTCCCTAAGAATTGACCCCAGAGCTTTGTGGGTGCTAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS TCA 90 bp | GTAGGCTGCAGGATCCACCTTGACTTCAGTGATTCTGGTTTCAGTTaGTCCTCTGGGCATCTCTTCAGGTGGAACCTCGTTCTGGTACTG | + |
|
Preference number: 5 (lower is better) Translates to: VGCRIHLDFSDSGFS*SSGHLFRWNLVLVL Trigger: CAGTACCAGAACGAGGTTCCACCTGAAGAGATGCCCAGAGGATCAACTGAAACCAGAATCACTGAAGTCAAGGTGGATCCTGCAGCCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CCA 90 bp | TCCTTAGTGTTCTTTAAGAAAGGTTCAAGTTTTTCAACAGAGAACTaGAAGCTGGAGAGCAGGAGGGCGCCCAGCCGTTGGCTCTGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: SLVFFKKGSSFSTEN*KLESRRAPSRWLWA Trigger: AGCCCAGAGCCAACGGCTGGGCGCCCTCCTGCTCTCCAGCTTCCAGTTCTCTGTTGAAAAACTTGAACCTTTCTTAAAGAACACTAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000146413.8 |
||
| CDS CCA 90 bp | TGGAGGGGGAGCTTGAGCAGTTTCCGAGCAGGTGAAGAGTCTAATTaGTCCATACTTCTCTTCTTGAGCTGTACTGACACCTTCTGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: WRGSLSSFRAGEESN*SILLFLSCTDTFWR Trigger: CCTCCAGAAGGTGTCAGTACAGCTCAAGAAGAGAAGTATGGACCAATTAGACTCTTCACCTGCTCGGAAACTGCTCAAGCTCCCCCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CCA 90 bp | TGTTCTTTAAGAAAGGTTCAAGTTTTTCAACAGAGAACTGGAAGCTaGAGAGCAGGAGGGCGCCCAGCCGTTGGCTCTGGGCTAACTTCA | + |
|
Preference number: 5 (lower is better) Translates to: CSLRKVQVFQQRTGS*RAGGRPAVGSGLTS Trigger: TGAAGTTAGCCCAGAGCCAACGGCTGGGCGCCCTCCTGCTCTCCAGCTTCCAGTTCTCTGTTGAAAAACTTGAACCTTTCTTAAAGAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000146413.8 |
||
| CDS-3UTR CAA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTCTCTGGAGGGGGAGCTaGAGCAGTTTCCGAGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: LASVFYGNNPPWPLKHFLLWRGS*SSFRAG Trigger: ACCTGCTCGGAAACTGCTCAAGCTCCCCCTCCAGAG...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCACTCTGGAGGGGGAGCTaGAGCAGTTTCCGAGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: TKSVLNTLFWIHTCCHSALWRGS*SSFRAG Trigger: ACCTGCTCGGAAACTGCTCAAGCTCCCCCTCCAGAG...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS TCA 90 bp | TCCATACTTCTCTTCTTGAGCTGTACTGACACCTTCTGGAGGTACTaGGTACTCTCATCCATGAGGGCTTGCAGCTGCTTCACTGATCCT | + |
|
Preference number: 5 (lower is better) Translates to: SILLFLSCTDTFWRY*VLSSMRACSCFTDP Trigger: AGGATCAGTGAAGCAGCTGCAAGCCCTCATGGATGAGAGTACTCAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAGAGAAGTATGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CCA 90 bp | GTAGGCAAAGACTTGGTTCTGATCTTGTACTATTCTCTGGTAGTCTaGCTTCGTGCTAAGAACTTCCTTCTGGGAAGACCTGAGGTAGGC | + |
|
Preference number: 5 (lower is better) Translates to: VGKDLVLILYYSLVV*LRAKNFLLGRPEVG Trigger: GCCTACCTCAGGTCTTCCCAGAAGGAAGTTCTTAGCACGAAGCCAGACTACCAGAGAATAGTACAAGATCAGAACCAAGTCTTTGCCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS TCA 90 bp | GTTTCCGAGCAGGTGAAGAGTCTAATTGGTCCATACTTCTCTTCTTaGGCTGTACTGACACCTTCTGGAGGTACTGAGTACTCTCATCCA | + |
|
Preference number: 5 (lower is better) Translates to: VSEQVKSLIGPYFSS*AVLTPSGGTEYSHP Trigger: TGGATGAGAGTACTCAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAGAGAAGTATGGACCAATTAGACTCTTCACCTGCTCGGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | TCAGCCCCAGGAAATGACAACACACGGTTTTTAAATAACACGCCATTCACTAACGGACTGCCTTCTGTCTaGAGGACGGATAGACTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: SAPGNDNTRFLNNTPFTNGLPSV*RTDRLF Trigger: GAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTCC...GTTAGTGAATGGCGTGTTATTTAAAAACCGTGTGTTGTCATTTCCTGGGGCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTGGACTGCCTTCTGTCTaGAGGACGGATAGACTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: LASVFYGNNPPWPLKHFLGLPSV*RTDRLF Trigger: GAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTCC...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | TTAGCGTCAGTCTTTTATGGCAACAACCCACCTTGGCCTCTAAAACATTTCCTTGCTGCAGGATCCACCTaGACTTCAGTGATTCTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: LASVFYGNNPPWPLKHFLAAGST*TSVILV Trigger: AACCAGAATCACTGAAGTCAAGGTGGATCCTGCAGC...AAGGAAATGTTTTAGAGGCCAAGGTGGGTTGTTGCCATAAAAGACTGACGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCAAATGCTTCCAAAGGCTaGAGACTTGGCTGCAATGGA | + |
|
Preference number: 5 (lower is better) Translates to: TKSVLNTLFWIHTCCHSANASKG*RLGCNG Trigger: TCCATTGCAGCCAAGTCTCAAGCCTTTGGAAGCATT...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS-3UTR CAA 90 bp | ACAAAAAGTGTCCTTAACACACTCTTCTGGATACATACATGCTGTCACTCGGCATCCATACTTCTCTTCTaGAGCTGTACTGACACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: TKSVLNTLFWIHTCCHSASILLF*SCTDTF Trigger: GAAGGTGTCAGTACAGCTCAAGAAGAGAAGTATGGA...TGCCGAGTGACAGCATGTATGTATCCAGAAGAGTGTGTTAAGGACACTTTTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CCA 72 bp | AAGCTGGAGAGCAGGAGGGCGCCCAGCCGTTGGCTCTaGGCTAACTTCACACTGATGGACCTGCAGAGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: KLESRRAPSRWL*ANFTLMDLQSS Trigger: AGAGCTCTGCAGGTCCATCAGTGTGAAGTTAGCCCAGAGCCAACGGCTGGGCGCCCTCCTGCTCTCCAGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000146413.8 |
||
| CDS CCA 72 bp | AACTGGAAGCTGGAGAGCAGGAGGGCGCCCAGCCGTTaGCTCTGGGCTAACTTCACACTGATGGACCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: NWKLESRRAPSR*LWANFTLMDLQ Trigger: CTGCAGGTCCATCAGTGTGAAGTTAGCCCAGAGCCAACGGCTGGGCGCCCTCCTGCTCTCCAGCTTCCAGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000146413.8 |
||
| CDS CCA 72 bp | ACACTGATGGACCTGCAGAGCTCTGTGATGCCTGGGTaGAAGGGAGCCAATGACTTCCGCCGGTTTACTTCT | + |
|
Preference number: 6 (lower is better) Translates to: TLMDLQSSVMPG*KGANDFRRFTS Trigger: AGAAGTAAACCGGCGGAAGTCATTGGCTCCCTTCCACCCAGGCATCACAGAGCTCTGCAGGTCCATCAGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 |
||
| CDS CCA 72 bp | AGAAAGGTTCAAGTTTTTCAACAGAGAACTGGAAGCTaGAGAGCAGGAGGGCGCCCAGCCGTTGGCTCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: RKVQVFQQRTGS*RAGGRPAVGSG Trigger: CCCAGAGCCAACGGCTGGGCGCCCTCCTGCTCTCCAGCTTCCAGTTCTCTGTTGAAAAACTTGAACCTTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000146413.8 |
||
| CDS TCA 72 bp | GGTAGGCAGAGGATTGAGGCAATGCTTCCAAAGGCTTaGGACTTGGCTGCAATGGACGATCCTGAGTCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: GRQRIEAMLPKA*DLAAMDDPESR Trigger: CCGAGACTCAGGATCGTCCATTGCAGCCAAGTCTCAAGCCTTTGGAAGCATTGCCTCAATCCTCTGCCTACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 ENSMUST00000154213.2 |
||
| CDS CCA 72 bp | TTGGCTGCAATGGACGATCCTGAGTCTCGGACATCGTaGGTTCCTGGTCTTCTGATCTGGTCACTGACGTCA | + |
|
Preference number: 6 (lower is better) Translates to: LAAMDDPESRTS*VPGLLIWSLTS Trigger: TGACGTCAGTGACCAGATCAGAAGACCAGGAACCCACGATGTCCGAGACTCAGGATCGTCCATTGCAGCCAA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 ENSMUST00000154213.2 |
||
| CDS TCA 72 bp | CTGACACCTTCTGGAGGTACTGAGTACTCTCATCCATaGGGGCTTGCAGCTGCTTCACTGATCCTTGGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: LTPSGGTEYSHP*GLAAASLILGA Trigger: AGCTCCAAGGATCAGTGAAGCAGCTGCAAGCCCTCATGGATGAGAGTACTCAGTACCTCCAGAAGGTGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS GCA 72 bp | AGGGAGCCAATGACTTCCGCCGGTTTACTTCTTTCATaGTTGCTCGTCTCCAGGACTGCCTTCTGTCTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: REPMTSAGLLLS*LLVSRTAFCLE Trigger: CTCAAGACAGAAGGCAGTCCTGGAGACGAGCAAGCATGAAAGAAGTAAACCGGCGGAAGTCATTGGCTCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 |
||
| CDS CAA 72 bp | GAGCCAATGACTTCCGCCGGTTTACTTCTTTCATGCTaGCTCGTCTCCAGGACTGCCTTCTGTCTTGAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: EPMTSAGLLLSC*LVSRTAFCLED Trigger: GTCCTCAAGACAGAAGGCAGTCCTGGAGACGAGCAAGCATGAAAGAAGTAAACCGGCGGAAGTCATTGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 |
||
| CDS CAA 90 bp | TCGTCTCCAGGACTGCCTTCTGTCTTGAGGACGGATAGACTGTTCTaGAGGGGACAAATGAAAGGACCTCAACTGAGATCCCTCCTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: SSPGLPSVLRTDRLF*RGQMKGPQLRSLLV Trigger: CACCAGGAGGGATCTCAGTTGAGGTCCTTTCATTTGTCCCCTCAAGAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTCCTGGAGACGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 |
||
| CDS TCA 72 bp | CTCTTCTTGAGCTGTACTGACACCTTCTGGAGGTACTaGGTACTCTCATCCATGAGGGCTTGCAGCTGCTTC | + |
|
Preference number: 6 (lower is better) Translates to: LFLSCTDTFWRY*VLSSMRACSCF Trigger: GAAGCAGCTGCAAGCCCTCATGGATGAGAGTACTCAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS GCA 72 bp | GCTAAGAACTTCCTTCTGGGAAGACCTGAGGTAGGCTaGAGGATCCACCTTGACTTCAGTGATTCTGGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: AKNFLLGRPEVG*RIHLDFSDSGF Trigger: GAAACCAGAATCACTGAAGTCAAGGTGGATCCTGCAGCCTACCTCAGGTCTTCCCAGAAGGAAGTTCTTAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CAA 72 bp | GGACTGCCTTCTGTCTTGAGGACGGATAGACTGTTCTaGAGGGGACAAATGAAAGGACCTCAACTGAGATCC | + |
|
Preference number: 6 (lower is better) Translates to: GLPSVLRTDRLF*RGQMKGPQLRS Trigger: GGATCTCAGTTGAGGTCCTTTCATTTGTCCCCTCAAGAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 |
||
| CDS CAA 72 bp | TTTCATGCTTGCTCGTCTCCAGGACTGCCTTCTGTCTaGAGGACGGATAGACTGTTCTTGAGGGGACAAATG | + |
|
Preference number: 6 (lower is better) Translates to: FHACSSPGLPSV*RTDRLFLRGQM Trigger: CATTTGTCCCCTCAAGAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTCCTGGAGACGAGCAAGCATGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 |
||
| CDS TCA 72 bp | AGGATCCACCTTGACTTCAGTGATTCTGGTTTCAGTTaGTCCTCTGGGCATCTCTTCAGGTGGAACCTCGTT | + |
|
Preference number: 6 (lower is better) Translates to: RIHLDFSDSGFS*SSGHLFRWNLV Trigger: AACGAGGTTCCACCTGAAGAGATGCCCAGAGGATCAACTGAAACCAGAATCACTGAAGTCAAGGTGGATCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CAA 90 bp | GTTTACTTCTTTCATGCTTGCTCGTCTCCAGGACTGCCTTCTGTCTaGAGGACGGATAGACTGTTCTTGAGGGGACAAATGAAAGGACCT | + |
|
Preference number: 6 (lower is better) Translates to: VYFFHACSSPGLPSV*RTDRLFLRGQMKGP Trigger: AGGTCCTTTCATTTGTCCCCTCAAGAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTCCTGGAGACGAGCAAGCATGAAAGAAGTAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 ENSMUST00000124671.2 ENSMUST00000146413.8 |
||
| CDS CCA 72 bp | AGCTTGAGCAGTTTCCGAGCAGGTGAAGAGTCTAATTaGTCCATACTTCTCTTCTTGAGCTGTACTGACACC | + |
|
Preference number: 6 (lower is better) Translates to: SLSSFRAGEESN*SILLFLSCTDT Trigger: GGTGTCAGTACAGCTCAAGAAGAGAAGTATGGACCAATTAGACTCTTCACCTGCTCGGAAACTGCTCAAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS TCA 72 bp | CAGGTGAAGAGTCTAATTGGTCCATACTTCTCTTCTTaGGCTGTACTGACACCTTCTGGAGGTACTGAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: QVKSLIGPYFSS*AVLTPSGGTEY Trigger: GTACTCAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAGAGAAGTATGGACCAATTAGACTCTTCACCTG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS TCA 72 bp | TCGTTCTGGTACTGCAGTAAGAGCCGATCCCAGGCCTaGCGCTCTAAAGAAAACTCTTTTGAATCTTCAACA | + |
|
Preference number: 6 (lower is better) Translates to: SFWYCSKSRSQA*RSKENSFESST Trigger: TGTTGAAGATTCAAAAGAGTTTTCTTTAGAGCGTCAGGCCTGGGATCGGCTCTTACTGCAGTACCAGAACGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146413.8 |
||
| CDS CCA 72 bp | GACTTGGTTCTGATCTTGTACTATTCTCTGGTAGTCTaGCTTCGTGCTAAGAACTTCCTTCTGGGAAGACCT | + |
|
Preference number: 6 (lower is better) Translates to: DLVLILYYSLVV*LRAKNFLLGRP Trigger: AGGTCTTCCCAGAAGGAAGTTCTTAGCACGAAGCCAGACTACCAGAGAATAGTACAAGATCAGAACCAAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS CAA 90 bp | ACTGCAGTAAGAGCCGATCCCAGGCCTGACGCTCTAAAGAAAACTTaGTTATATATTCTTTCACCTCAGCTACTGATGCTTCCAGTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: TAVRADPRPDALKKT*LYILSPQLLMLPVK Trigger: TTTCACTGGAAGCATCAGTAGCTGAGGTGAAAGAATATATAACAAAGTTTTCTTTAGAGCGTCAGGCCTGGGATCGGCTCTTACTGCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||
| CDS TCA 72 bp | TCGTTCTGGTACTGCAGTAAGAGCCGATCCCAGGCCTaGCGCTCTAAAGAAAACTTTGTTATATATTCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: SFWYCSKSRSQA*RSKENFVIYSF Trigger: GAAAGAATATATAACAAAGTTTTCTTTAGAGCGTCAGGCCTGGGATCGGCTCTTACTGCAGTACCAGAACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103129.9 ENSMUST00000103130.8 |
||